Changes in project.pbxproj

13a035b13f0d57cc952439d2c8f7ce514226f11a - Merge branch 'master' into knepley/feature-plex-elasticity-test

Mon, 13 Aug 2018 15:19:56 +0000

Merge branch 'master' into knepley/feature-plex-elasticity-test* master: (1553 commits) -options_table was changed to options_view in 2014 but documentation was not updated to reflect it configure: fix F2003 test Plex test ex5: Removed "future" test, as it resulted in issues in the nightly tests. Some minor typos in TS Add ADIOS2.py which I forgot to git add in the past Plex ex5: Disable test Doc: Added note for interface change KSPLSQRMonitorDefault fixed for quad precision Tao: Added alternative output for chwirut2 test. TS ex45,ex46: Removed overly refined tests for faster nightly tests. KSP ex72: Fixed needlessly long-running PCTFS tests. SNES ex56: Reduced test size to speed up nightly test suite. KSPSolve_LSQR: don't compute unused norm of rhs SNES ex13: Reduced problem sizes for nightly tests. PetscOptionsDeprecated(): fix for NULL prefix PetscOptionsDeprecated(): add option to print additional info SNES ex12: Reduced sizes for BDDC tests. PetscFileRetrieve(): Suppress output to STDERR when downloading a file. MatMatMult: Fixed unused variable pN. DMDestroy: Guard call to dm->ops->destroy * Similar guards are in place in many other methods (IS,Vec,Mat) and permit the DM to be destroyed even if DMSetType() was never called. ... List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

59e7829ccff665372c1d09026a11beea9cbf8624 - Merge branch 'master' into knepley/feature-plex-parallel-submesh

Tue, 07 Aug 2018 17:51:05 +0000

Merge branch 'master' into knepley/feature-plex-parallel-submesh* master: (2931 commits) remove N in docs for SNESQN replaced test tolerance with PETSC_SQRT_MACHINE_EPSILON fortran: PetscComplex type is missing from fortran initialize variables so that static analyzer doesn't mistakenly think they are used uninitialized. Move access of prefix until it is actually used Remove DMDASplitComm2d(), used in one example that was not tested Functions that do not return PetscErrorCode should not use PetscFunctionBegin/End paradgm remove unneeded reassignment of same value Missing CHKERRQ(); Mostly in Tao code Remove clang static analyser warning about passing NULL variable to strncat() missing newline in -ts_monitor_extreme minor fixes for integer counters Configure: Deal with '__func__' in C89 builds with newer Clang and GCC. Jenkinsfile: Increased timeout for tests to 5 minutes. 3.9 changes: further clarify removal of -pc_factor_mat_solver_package Options deprecations: add "PETSc" to inline warning removing unused variable MatShift support added to MATSUBMAT. Mimics MATSHELL functionality. Needed for matrix-free Hessians in TAO Newton-Line-Search methods. Add -ts_monitor_extreme Dev manual: add note on deprecating options database keys ...Conflicts: src/dm/impls/plex/examples/tests/ex4.c List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

2cf2a4037edc21d5c05f749db82f170038eb1275 - Merge branch 'master' into knepley/feature-pc-patch

Mon, 11 Jun 2018 17:40:22 +0000

Merge branch 'master' into knepley/feature-pc-patch* master: (562 commits) fix clang-analyzer warning Developers manual never use system randomizers in PETSc and example source code. missing CHKERRQ() DT: Reverting the tgamma change broke MPFR - I guess we need a nightly build with it in Add a test for ex21 Fix error in ex21 Add missing fortran interface that handles null objects DMComposite: add missing guards MatPreallocate: fix overpreallocation of local rows style fixes MatView_MPI_DA: do not print twice the class prefix MatSetOperation: stash the original MatView_XXX in the viewnative function pointer DMCreateInterpolation_DA gracefully error instead of catching FPE signals MatIncreaseOverlap: preserve communicator of index sets MatMPIAIJ: fix indentation and missing CHKERRQ ISBuildTwoSided: remove tabs and fix style Fix documentation PetscViewerDraw: fix unininitialized warning from valgrind MatConvert_SeqAIJ_SeqBAIJ: remove error for non square matrices and add MAT_REUSE_MATRIX case Mat: MAT_INPLACE_MATRIX can be used for transposition with rectangular matrices ...Conflicts: src/dm/dt/interface/dtfe.c src/dm/impls/plex/plex.c src/dm/impls/plex/plexfem.c src/snes/examples/tutorials/ex13.c src/snes/examples/tutorials/ex62.c src/snes/examples/tutorials/makefile src/snes/examples/tutorials/output/ex62_18.out src/snes/examples/tutorials/output/ex62_19.out src/snes/examples/tutorials/output/ex62_20.out src/snes/examples/tutorials/output/ex62_20_parmetis.out src/snes/examples/tutorials/output/ex62_21.out src/snes/examples/tutorials/output/ex62_22.out src/snes/examples/tutorials/output/ex62_23.out src/snes/examples/tutorials/output/ex62_24.out src/snes/examples/tutorials/output/ex62_25.out src/snes/examples/tutorials/output/ex62_26.out src/snes/examples/tutorials/output/ex62_27.out src/snes/examples/tutorials/output/ex62_28.out src/snes/examples/tutorials/output/ex62_29.out src/snes/examples/tutorials/output/ex62_2d_p3_1.out src/snes/examples/tutorials/output/ex62_30.out src/snes/examples/tutorials/output/ex62_31.out src/snes/examples/tutorials/output/ex62_32.out src/snes/examples/tutorials/output/ex62_33.out src/snes/examples/tutorials/output/ex62_34.out src/snes/examples/tutorials/output/ex62_35.out src/snes/examples/tutorials/output/ex62_36.out src/snes/examples/tutorials/output/ex62_pc_simple.out src/snes/examples/tutorials/output/ex62_pc_simplec.out src/snes/examples/tutorials/output/ex62_quad_q2p1_full.out src/snes/examples/tutorials/output/ex62_quad_q2q1_full.out src/snes/utils/dmplexsnes.c List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

d1b71f57f0de1a36f65c49721deebc9cb6f2514a - Merge branch 'master' into knepley/feature-error-logging

Thu, 19 Apr 2018 16:40:24 +0000

Merge branch 'master' into knepley/feature-error-logging* master: (221 commits) dashboard: count and list example compile failures like: fix fix-pr879-jczhang-optimize-vecscatter-multi-copy add manual page cross links for SNESLineSearchSetPostCheck() and related routines fix help manual of MatCreateSubmatrices() Reported-by: Tim Steinhoff Add manual pages for PetscRealPart() and PetscImaginaryPart() fix compile error with missing MPI_C_DOBULE_COMPLEX fix typo Reported-by: Febrian Setianto plex tutorial ex5: updated test requirements DMPlexLoad_HDF5_Xdmf_Internal: fix for complex PetscScalar. DMPlexLoad_HDF5_Xdmf_Internal: fix for 64-bit PetscInt. DMPlexBuildFromCellList_Internal: use DMPlexInvertCell_Internal (with PetscInt* arg) petscviewer.h: removed notice which is no longer relevant DMPlexCreateFromFile: document option check only if PETSC_USE_DEBUG DMPlexBuildFromCellList_Internal optionally inverts cells. ex5: new test 4 with -compare without repartitioning ex5: new test 3 using -compare ex5: HDF5 write+read moved to separate function ex5: option -format processed in ProcessOptions() ex5: added missing hdf5 requirement ...Conflicts: include/petsclog.h List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

2f07c833297f1c1acc6a9f8c100af3fa2b180e36 - Merge branch 'master' into knepley/feature-snes-ex13-spectral

Sat, 14 Apr 2018 13:36:45 +0000

Merge branch 'master' into knepley/feature-snes-ex13-spectral* master: (2350 commits) migrate warning fix from next-tmp Revert "Remove dead code." clarifying comment in the code Remove dead code. Add JuMP citation Copyedits and updates to developers manual Add more protection to intrinsics MPI: protect arguments in MPI macros Add the missing conditionals for 64-bit build Plex+VTK: Fix field type determination Fix bug in name cleanup Bib: Added ref Plex+VTK: Fix field type determination Plex: Updated test output - I am now hating this shit forgot to save file after moving prototypes to petscsys.h update Apple example project settings per Xcode Two functions should actually be public, used, for example from Apple MacOS and iOS programs includes should always be included relative to include directory Apple removed old locations of docsets SNES ex12: Updated test output ...Conflicts: src/snes/examples/tutorials/ex13.c List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

9044fa666813e72067b2d44bab405329fb3f183c - Merge branch 'master' into knepley/fix-plex-residual-loop

Sat, 14 Apr 2018 11:17:56 +0000

Merge branch 'master' into knepley/fix-plex-residual-loopWarning: This merge includes real changes* master: (188 commits) Add JuMP citation Copyedits and updates to developers manual Add more protection to intrinsics MPI: protect arguments in MPI macros Add the missing conditionals for 64-bit build Plex+VTK: Fix field type determination Fix bug in name cleanup Bib: Added ref Plex+VTK: Fix field type determination Plex: Updated test output - I am now hating this shit forgot to save file after moving prototypes to petscsys.h update Apple example project settings per Xcode Two functions should actually be public, used, for example from Apple MacOS and iOS programs includes should always be included relative to include directory Apple removed old locations of docsets SNES ex12: Updated test output SNES ex62: Set name of solution vector - Update test output revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html release: set v3.9 strings move output file to the correct location. i.e fix 305862f9cd0dc399542ae11dd744508e4b6ad2e3 ...Conflicts: src/snes/utils/dmplexsnes.c src/ts/utils/dmplexts.c List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

b2f06193f3682212a7fc62b82825a2f9c105e429 - Merge branch 'maint'

Sun, 08 Apr 2018 23:36:41 +0000

Merge branch 'maint' List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

279f676c5290b2d70df3ad4ba443571d8a6951be - includes should always be included relative to include directory

Sun, 08 Apr 2018 23:35:23 +0000

includes should always be included relative to include directoryApple changed the location for DocSetsCommit-type: bug-fix, documentation List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

3d996552296fa5aff2ef76b1450b6d3231aa62c2 - Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint

Tue, 19 Jul 2016 17:47:40 +0000

Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepointConflicts: src/docs/website/documentation/changes/dev.html src/ksp/ksp/examples/tutorials/ex59.c src/ksp/pc/impls/bddc/bddc.c src/ksp/pc/impls/bddc/bddcfetidp.c src/ksp/pc/impls/bddc/bddcprivate.c src/ksp/pc/impls/bddc/bddcschurs.c src/mat/impls/is/matis.c src/mat/impls/is/matis.h List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

229d00dfc08e195a32bfe3a38f08c1c89732ffe6 - Merge branch 'balay/fix-PetscInt-scanf/maint' into knepley/feature-plex-particle-example

Thu, 23 Jun 2016 18:34:45 +0000

Merge branch 'balay/fix-PetscInt-scanf/maint' into knepley/feature-plex-particle-exampleThis merge is done to be able to use 'PetscInt_FMT' in data_bucket.c List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

803da64b4d979fbbbf74998f86bc5f4615b760f8 - Merge branch 'maint'

Sat, 11 Jun 2016 04:39:11 +0000

Merge branch 'maint' List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

575a05926143c699a34610f4aae807483647ae9b - Fixed a variety of issues related to iOS builds

Sat, 11 Jun 2016 04:33:46 +0000

Fixed a variety of issues related to iOS buildsSome developers did not properly use relative paths for private include filesfile that is not normally compiled had errors due to outdated API in it (why is it compiled with iOS?)some iOS build scripts had outdated paths for various itemsiSO version of makeall implicitly assumed PETSC_DIR had been set (OSX version previously fixed by Satish Balay)Reported-by: Francisco Schuetze List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

3aa2d9e3a17455108487be9a174c0f069d9014ad - Merge branch 'barry/fix-nonew-notcollective/maint' into jed/mat-assembly-perf

Sat, 15 Aug 2015 01:10:07 +0000

Merge branch 'barry/fix-nonew-notcollective/maint' into jed/mat-assembly-perfJed this fucking 6+ month running thing in next that is not in master is a royal fucking pain in the ass andan abuse of git. I think it is not justified to ever have anything in next for more than a few weeks at most.Either take it out of next if it is broken or put it in master if it is not broken. Hanging around in next butnot master for ever is not a good policy. List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

e1b06f76ad35ce2a89fc667d1feb3b2de35f6e0a - Merge branch 'master' into knepley/solkx

Wed, 20 May 2015 13:47:27 +0000

Merge branch 'master' into knepley/solkx* master: (6933 commits) Bib: Added reference Includegraph: Updated for compatibility with new folder layout. Add SNESLineSearchReason to fortran includes Also truncate names to fit 32 char fortran limit fix compile warnings /usr/home/balay/petsc.clone-2/src/vec/vec/interface/vector.c:1944: warning: division by zero in '1.0e+0 / 0.' /usr/home/balay/petsc.clone-2/src/ksp/ksp/interface/itfunc.c:508: warning: 'vec_rhs' may be used uninitialized in this function updated output for new trust region initial size initial size of the trust region is set as a percent of the norm of the initial guess, it should not be related to the initial norm of the function (which is kind of nuts). The default bounds for SNESVISetVariableBounds() in the manual page were reversed from correct values Bib: Added refs Bib: Update MPICH webpage Plex: Forgot to close file removed nonexistent ex46f from makefile test rule Revert "fixed bad merge into master" fixed bad merge into master fix memory leak in mkl_pardiso fix some formatting in mkl_pardiso code mv runex111 from TESTEXAMPLES_C to TESTEXAMPLES_DATAFILESPATH Mat+Doc: More Fortran docs Plex ex3: Run tests with the correct number of field components Bib: Added TetGen cite parmetis: make sure 'ldd libparmetis.so' points to the correct libmetis.so that its linked with. small fix as reported by the nightly test ...Conflicts: config/builder.py List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

5a4ab5aba6d7ba6bb46f95414304dbd9bb09f678 - Merge branch 'master' into tisaac/dmforest

Thu, 02 Apr 2015 14:12:37 +0000

Merge branch 'master' into tisaac/dmforestIf we're going to start developing on this again, the recent changes to thelocation of configuration files will make it annoying to switch to and fromthis branch. Matt's and my fixes in DMPlex will also be relevant.* master: (1557 commits) MatLoad_MPIDense() always allocated array space even if it was previously provided Clarified lumping options for PCFieldSplitSchurPreType SELFP. fixed up PetscInfo in GAMG TSErrorWeightedNorm[2|Infinity]: API changes MatLoad_SeqDense() always allocated new space for the data even if the user already provided it Fixed DMCompositeGetAccessArray() to support readonly vectors Fix obviously-wrong aspects of documentation on SNESVINEWTONRSLS and SNESVINEWTONSSLS. fixed example to compile - demonstrates a bug var name 'len' was F90 key word For user provided Jacobian functions they should always assembly into the second matrix, the one from which the preconditioner is built because the first may be used as matrix-free with -snes_mf_operator Suggest --with-64-bit-indices if users mistakenly use --with-64bit-indices Fix configure logging of integer size. missing underscore in #define of vecgetarrayread translation of fortran stub for VECGETARRAYREAD updated test output files to reflect differences introduced previously in PCView output -ksp_type preonly does not support -ksp_monitor_short so remove from test line to prevent extranious warning output missing CHKERRQ; and ugly double declaration of ierr Plex ex3: For want of a semicolon, the kingdom was lost MatSetValuesMPISBAIJ will now print correct global indices when error generated due to new nonzero location completed basic use of MatSetValuesBlocked_SeqBAIJ_Inlined() by MatSetValuesBlocked_MPIBAIJ() to allow proper global indices being printed when error generated by new nonzero locations. Added inline version of MatSetValuesBlocked_SeqBAIJ() to be used by MatSetValuesBlocked_MPIBAIJ() to print error message for nonzero block with global indices ... List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

898446f941de989eb59a155860a54be7cc14d054 - Merge branch 'master' into shri/ts-is-for-differential-variables

Wed, 11 Mar 2015 04:17:30 +0000

Merge branch 'master' into shri/ts-is-for-differential-variablesConflicts: include/petsc-private/tsimpl.h src/ts/impls/eimex/eimex.c src/ts/interface/ts.c List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

f2dee214e9786e57c32a0a7e0b16d5e8ff4abb42 - Merge branch 'master' into jed/chem

Fri, 06 Mar 2015 00:10:44 +0000

Merge branch 'master' into jed/chemNote merging a branch with good stuff in it for a year and a half is insane!Conflicts: src/ts/examples/tutorials/makefile src/ts/interface/ts.c List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

a197972ac2354be954b7aae623d40f6de50a3e72 - Merge branch 'master' into barry/saws-options-merge-master

Wed, 11 Feb 2015 21:58:15 +0000

Merge branch 'master' into barry/saws-options-merge-masterTotally confusing manual merge, could be wrongConflicts: include/petscoptions.h src/dm/impls/da/dacreate.c src/sys/objects/aoptions.c src/sys/threadcomm/interface/threadcomm.c List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

5070577325e1232aef37d5e5c67a58c4178cd37f - Merge branch 'master' into pr252/dmay/PetscViewerBinarySkipHeaderVecViewLoad

Tue, 10 Feb 2015 02:59:16 +0000

Merge branch 'master' into pr252/dmay/PetscViewerBinarySkipHeaderVecViewLoadManual merge of makefileConflicts: src/sys/classes/viewer/examples/tutorials/makefile List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj

909a08a465b1d1e590479744cf0e80556843dde1 - Merge branch 'master' into mlange/refactor-plex-distribute

Fri, 28 Nov 2014 09:34:42 +0000

Merge branch 'master' into mlange/refactor-plex-distributeConflicts: src/dm/impls/plex/examples/tests/output/ex12_1.out src/dm/impls/plex/examples/tests/output/ex12_2.out List of files: /petsc/systems/Apple/iOS/PETSc/PETSc.xcodeproj/project.pbxproj