Changes in makeframework

3d996552296fa5aff2ef76b1450b6d3231aa62c2 - Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint

Tue, 19 Jul 2016 17:47:40 +0000

Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepointConflicts: src/docs/website/documentation/changes/dev.html src/ksp/ksp/examples/tutorials/ex59.c src/ksp/pc/impls/bddc/bddc.c src/ksp/pc/impls/bddc/bddcfetidp.c src/ksp/pc/impls/bddc/bddcprivate.c src/ksp/pc/impls/bddc/bddcschurs.c src/mat/impls/is/matis.c src/mat/impls/is/matis.h List of files: /petsc/systems/Apple/iOS/bin/makeframework

229d00dfc08e195a32bfe3a38f08c1c89732ffe6 - Merge branch 'balay/fix-PetscInt-scanf/maint' into knepley/feature-plex-particle-example

Thu, 23 Jun 2016 18:34:45 +0000

Merge branch 'balay/fix-PetscInt-scanf/maint' into knepley/feature-plex-particle-exampleThis merge is done to be able to use 'PetscInt_FMT' in data_bucket.c List of files: /petsc/systems/Apple/iOS/bin/makeframework

803da64b4d979fbbbf74998f86bc5f4615b760f8 - Merge branch 'maint'

Sat, 11 Jun 2016 04:39:11 +0000

Merge branch 'maint' List of files: /petsc/systems/Apple/iOS/bin/makeframework

575a05926143c699a34610f4aae807483647ae9b - Fixed a variety of issues related to iOS builds

Sat, 11 Jun 2016 04:33:46 +0000

Fixed a variety of issues related to iOS buildsSome developers did not properly use relative paths for private include filesfile that is not normally compiled had errors due to outdated API in it (why is it compiled with iOS?)some iOS build scripts had outdated paths for various itemsiSO version of makeall implicitly assumed PETSC_DIR had been set (OSX version previously fixed by Satish Balay)Reported-by: Francisco Schuetze List of files: /petsc/systems/Apple/iOS/bin/makeframework

1ceb14c030f320ad962f864c6f8de98a26bbbaf7 - Merge branch 'master' into pr263/PierreBdR/ts-domain-error-in-stage/master

Fri, 23 Oct 2015 03:37:39 +0000

Merge branch 'master' into pr263/PierreBdR/ts-domain-error-in-stage/master List of files: /petsc/systems/Apple/iOS/bin/makeframework

417c5e9afaacda2cf655e58897fdfc9d4dd1055e - Merge branch 'master' into tisaac/dmforest

Mon, 05 Oct 2015 16:36:24 +0000

Merge branch 'master' into tisaac/dmforestGet 3.6.2 patches* master: (1360 commits) remove nasty memory leak with CUDA code when using block Jacobi with multiple blocks per process print abs in Fortran test example in order to have same result with real and complex builds changed outdate mpirun and -np to mpiexec and -n force sqrt to be taken in the precision of PetscReal in fortran examples continuation line too soon for some compilers stop configure if user selected C++ clanguage, single precision, complex combination since we do not support it fixes for Fortran examples to compile cleanly in single precision that do not involve complex numbers fixes to Fortran examples to compile cleanly in single precision complex fix previous mistake must cast 1. to PetscScalar before dividing by a PetscScalar (C++ complex class is terrible) must cast 0.0 to PetscScalar before comparison with a PetscScalar changed order of suggested locations of downloadable PETSc to Barry's preference Increase patchlevel to 3.6.2 remove debug print statement from two commits before remove debug print statements I accidently left in the last commit PetscDraw: Fix dummy definition of PetscDrawCollective{Begin|End}() remove cleanupMumps flag from MatDestroy_Mumps() it should always free the memory it allocated Bug detected while adding features to libMesh improved viewing of fractional counts in xml nested log viewing fixed bug in output of doubles to xml nested log files chombo: build only libs - not examples fix typo. 'gcc-4.8 --with-cxx-dialect=C++11' gives a warning with this line - even though its in a #ifdef thats never enabled. ... List of files: /petsc/systems/Apple/iOS/bin/makeframework

8d3c1932cd76dc2d1ac854cce48898cc6ac885a3 - Merge branch 'tisaac/dmplex-stable-tet-refinement' into tisaac/plex-feature-tree-fv

Sat, 29 Aug 2015 19:11:26 +0000

Merge branch 'tisaac/dmplex-stable-tet-refinement' into tisaac/plex-feature-tree-fvThis feature branch also changed the topology of nonconforming examples:I am merging so that I can make the regression output that should becorrect in master and next* tisaac/dmplex-stable-tet-refinement: (594 commits) plex: added tet shape regression test plexrefine: remove replaced code plex: update test output for new tet refinement order plex: fix tet refinement for stable element shape DMPlex: added test of shape quality to ex1 Better to use the proper error handling version of PetscViewerASCIIGetStdout() instead of PETSC_VIEWER_STDOUT_() Generate a very useful error message if PetscLogView(), PetscLogEventGetPerfInfo() or PetscLogEventGetFlops() is called with a preceeding call to PetscLogBegin() and friends (also -log_summary which triggers a PetscLogBegin()) fix compile warnings Plex: Fix bug with bcComps initialization Turn off elemental shared libraries if --with-shared-libraries=0 is used Bib: Added refs Bib: Fixed a bunch of errors add warning/error flag for '-mat_superlu_dist_parsymbfact' when MatInputMode=GLOBAL makefile: fix format tests: add back ex6f, runex6f targets - that got removed in 2f1d3d565a6a43067e6df75b043e6343b05fcd1d accessing option that may never have been set typo in DMNetworkSetNumVariables() reported by Sean Shahkarami superlu_dist: update to using latest 4.1 version fix compile warnings Generate an error message when trying to overwrite default options of CN and BEULER ... List of files: /petsc/systems/Apple/iOS/bin/makeframework

3aa2d9e3a17455108487be9a174c0f069d9014ad - Merge branch 'barry/fix-nonew-notcollective/maint' into jed/mat-assembly-perf

Sat, 15 Aug 2015 01:10:07 +0000

Merge branch 'barry/fix-nonew-notcollective/maint' into jed/mat-assembly-perfJed this fucking 6+ month running thing in next that is not in master is a royal fucking pain in the ass andan abuse of git. I think it is not justified to ever have anything in next for more than a few weeks at most.Either take it out of next if it is broken or put it in master if it is not broken. Hanging around in next butnot master for ever is not a good policy. List of files: /petsc/systems/Apple/iOS/bin/makeframework

548caff3eba8cf24d416c3740cab4bbdbccc587d - Merge branch 'mat-increaseoverlap' of ssh://bitbucket.org/Fande-Kong/petsc into pr332/master/Fande-Kong/mat-increaseoverlap-scalable

Tue, 23 Jun 2015 20:44:43 +0000

Merge branch 'mat-increaseoverlap' of ssh://bitbucket.org/Fande-Kong/petsc into pr332/master/Fande-Kong/mat-increaseoverlap-scalable List of files: /petsc/systems/Apple/iOS/bin/makeframework

665872a167016cf0ff469d88a989f316d838be52 - Merge remote-tracking branch 'petsc/master' into pcgasm-increaseoverlap

Mon, 22 Jun 2015 23:49:33 +0000

Merge remote-tracking branch 'petsc/master' into pcgasm-increaseoverlap List of files: /petsc/systems/Apple/iOS/bin/makeframework

baf50f97de32c6f82bae6e32b51d070ec2e6f8b5 - Merge remote-tracking branch 'petsc/master' into matpartitioning-hierach

Mon, 22 Jun 2015 23:18:50 +0000

Merge remote-tracking branch 'petsc/master' into matpartitioning-hierach List of files: /petsc/systems/Apple/iOS/bin/makeframework

1f256a99bacaae4044ad56f4ed7272d8806ac9f4 - Merge remote-tracking branch 'petsc/master' into mat-increaseoverlap

Mon, 22 Jun 2015 23:16:35 +0000

Merge remote-tracking branch 'petsc/master' into mat-increaseoverlap List of files: /petsc/systems/Apple/iOS/bin/makeframework

835523d979ae3cbc6e30900e1ab9358405b57630 - Merge branch 'master' into knepley/feature-snes-deflation

Fri, 12 Jun 2015 16:05:34 +0000

Merge branch 'master' into knepley/feature-snes-deflation* master: (239 commits) Bib: Moved entry revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html - enable cuda in configure release: set v3.6 strings doc: add PCGAMGSetReuseInterpolation() to changes file fix: workarround static initialization issue (perhaps compiler bug) on opensolaris c/complex build fix: ex40,ex41 errors in src/ts/examples/tutorials/ on bsd with c++/complex Perhaps this code nees a separate section when 'enorm == 0) - as pow(0,-0.33) = inf. manual: fix format more changes.. PCGASM/MatGetSubMatricesMPI() changes in dev.html. changes: more updates Add size checks for static arrays of assumed max size [-Warray-bounds] Doc: Update to Changes configure: default to useThreads= 0as the useThreads=1 code currently prints output in jumbled order [producing hard to read configure.log] Delete PETSc viewer attribute if none are left on the linked list instead of putting an empty attribute MatGetSubMatricesMPI_MPIAIJ(): guard for an empty B-matrix when delogging memory in MatSetSeqMats(). PCBDDC: fix typos in the specification of MPI operation MPIU_SUM was used with MPIU_INT when it should only be used with MPIU_REAL or MPIU_SCALAR fixed bad PetscPrintf() formatting in two examples Plex: In pointwise callbacks, use embedding dimension updates for generating Apple installations due to changes in locations of include files ... List of files: /petsc/systems/Apple/iOS/bin/makeframework

fae7eefdfb3a535422a10759ec4a8555db93857f - Merge branch 'master' into mesgarnejad/feature-plex-globaltonatural

Wed, 10 Jun 2015 13:22:30 +0000

Merge branch 'master' into mesgarnejad/feature-plex-globaltonatural* master: (219 commits) revert sources to dev - reset PETSC_VERSION_RELEASE - reset changes/dev.html - enable cuda in configure release: set v3.6 strings doc: add PCGAMGSetReuseInterpolation() to changes file fix: workarround static initialization issue (perhaps compiler bug) on opensolaris c/complex build fix: ex40,ex41 errors in src/ts/examples/tutorials/ on bsd with c++/complex Perhaps this code nees a separate section when 'enorm == 0) - as pow(0,-0.33) = inf. manual: fix format more changes.. PCGASM/MatGetSubMatricesMPI() changes in dev.html. changes: more updates Add size checks for static arrays of assumed max size [-Warray-bounds] Doc: Update to Changes configure: default to useThreads= 0as the useThreads=1 code currently prints output in jumbled order [producing hard to read configure.log] Delete PETSc viewer attribute if none are left on the linked list instead of putting an empty attribute MatGetSubMatricesMPI_MPIAIJ(): guard for an empty B-matrix when delogging memory in MatSetSeqMats(). PCBDDC: fix typos in the specification of MPI operation MPIU_SUM was used with MPIU_INT when it should only be used with MPIU_REAL or MPIU_SCALAR fixed bad PetscPrintf() formatting in two examples Plex: In pointwise callbacks, use embedding dimension updates for generating Apple installations due to changes in locations of include files configure: do not fail when checking MPICH version [similar to 2cadc8fc42fbad3c229d43b955581b8d29e02ad6 ] ... List of files: /petsc/systems/Apple/iOS/bin/makeframework

6ce549b9737625953dff5bd940a5071e58d5199c - Merge branch 'master' of bitbucket.org:petsc/petsc

Tue, 09 Jun 2015 14:29:51 +0000

Merge branch 'master' of bitbucket.org:petsc/petsc List of files: /petsc/systems/Apple/iOS/bin/makeframework

3759644b1e4bb363da9cb6f177a169e3daf7e96b - Merge branch 'barry/fix-apple-install'

Sat, 06 Jun 2015 03:53:37 +0000

Merge branch 'barry/fix-apple-install' List of files: /petsc/systems/Apple/iOS/bin/makeframework

e6e75211d226c622f451867f53ce5d558649ff4f - updates for generating Apple installations due to changes in locations of include files

Sat, 06 Jun 2015 03:52:40 +0000

updates for generating Apple installations due to changes in locations of include files List of files: /petsc/systems/Apple/iOS/bin/makeframework

e1b06f76ad35ce2a89fc667d1feb3b2de35f6e0a - Merge branch 'master' into knepley/solkx

Wed, 20 May 2015 13:47:27 +0000

Merge branch 'master' into knepley/solkx* master: (6933 commits) Bib: Added reference Includegraph: Updated for compatibility with new folder layout. Add SNESLineSearchReason to fortran includes Also truncate names to fit 32 char fortran limit fix compile warnings /usr/home/balay/petsc.clone-2/src/vec/vec/interface/vector.c:1944: warning: division by zero in '1.0e+0 / 0.' /usr/home/balay/petsc.clone-2/src/ksp/ksp/interface/itfunc.c:508: warning: 'vec_rhs' may be used uninitialized in this function updated output for new trust region initial size initial size of the trust region is set as a percent of the norm of the initial guess, it should not be related to the initial norm of the function (which is kind of nuts). The default bounds for SNESVISetVariableBounds() in the manual page were reversed from correct values Bib: Added refs Bib: Update MPICH webpage Plex: Forgot to close file removed nonexistent ex46f from makefile test rule Revert "fixed bad merge into master" fixed bad merge into master fix memory leak in mkl_pardiso fix some formatting in mkl_pardiso code mv runex111 from TESTEXAMPLES_C to TESTEXAMPLES_DATAFILESPATH Mat+Doc: More Fortran docs Plex ex3: Run tests with the correct number of field components Bib: Added TetGen cite parmetis: make sure 'ldd libparmetis.so' points to the correct libmetis.so that its linked with. small fix as reported by the nightly test ...Conflicts: config/builder.py List of files: /petsc/systems/Apple/iOS/bin/makeframework

898446f941de989eb59a155860a54be7cc14d054 - Merge branch 'master' into shri/ts-is-for-differential-variables

Wed, 11 Mar 2015 04:17:30 +0000

Merge branch 'master' into shri/ts-is-for-differential-variablesConflicts: include/petsc-private/tsimpl.h src/ts/impls/eimex/eimex.c src/ts/interface/ts.c List of files: /petsc/systems/Apple/iOS/bin/makeframework

f2dee214e9786e57c32a0a7e0b16d5e8ff4abb42 - Merge branch 'master' into jed/chem

Fri, 06 Mar 2015 00:10:44 +0000

Merge branch 'master' into jed/chemNote merging a branch with good stuff in it for a year and a half is insane!Conflicts: src/ts/examples/tutorials/makefile src/ts/interface/ts.c List of files: /petsc/systems/Apple/iOS/bin/makeframework