1af0996ceSBarry Smith #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 2c58f1c22SToby Isaac #include <petsc/private/dmlabelimpl.h> /*I "petscdmlabel.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4e6ccafaeSMatthew G Knepley 5412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexCellIsHybrid_Internal(DM dm, PetscInt p, PetscBool *isHybrid) 6412e9a14SMatthew G. Knepley { 7412e9a14SMatthew G. Knepley DMPolytopeType ct; 8412e9a14SMatthew G. Knepley PetscErrorCode ierr; 9412e9a14SMatthew G. Knepley 10412e9a14SMatthew G. Knepley PetscFunctionBegin; 11412e9a14SMatthew G. Knepley ierr = DMPlexGetCellType(dm, p, &ct);CHKERRQ(ierr); 12412e9a14SMatthew G. Knepley switch (ct) { 13412e9a14SMatthew G. Knepley case DM_POLYTOPE_POINT_PRISM_TENSOR: 14412e9a14SMatthew G. Knepley case DM_POLYTOPE_SEG_PRISM_TENSOR: 15412e9a14SMatthew G. Knepley case DM_POLYTOPE_TRI_PRISM_TENSOR: 16412e9a14SMatthew G. Knepley case DM_POLYTOPE_QUAD_PRISM_TENSOR: 17412e9a14SMatthew G. Knepley *isHybrid = PETSC_TRUE; 18412e9a14SMatthew G. Knepley default: *isHybrid = PETSC_FALSE; 19412e9a14SMatthew G. Knepley } 20412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 21412e9a14SMatthew G. Knepley } 22412e9a14SMatthew G. Knepley 23412e9a14SMatthew G. Knepley static PetscErrorCode DMPlexGetTensorPrismBounds_Internal(DM dm, PetscInt dim, PetscInt *cStart, PetscInt *cEnd) 24412e9a14SMatthew G. Knepley { 25412e9a14SMatthew G. Knepley DMLabel ctLabel; 26412e9a14SMatthew G. Knepley PetscErrorCode ierr; 27412e9a14SMatthew G. Knepley 28412e9a14SMatthew G. Knepley PetscFunctionBegin; 29412e9a14SMatthew G. Knepley if (cStart) *cStart = -1; 30412e9a14SMatthew G. Knepley if (cEnd) *cEnd = -1; 31412e9a14SMatthew G. Knepley ierr = DMPlexGetCellTypeLabel(dm, &ctLabel);CHKERRQ(ierr); 32412e9a14SMatthew G. Knepley switch (dim) { 33412e9a14SMatthew G. Knepley case 1: ierr = DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_POINT_PRISM_TENSOR, cStart, cEnd);CHKERRQ(ierr);break; 34412e9a14SMatthew G. Knepley case 2: ierr = DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_SEG_PRISM_TENSOR, cStart, cEnd);CHKERRQ(ierr);break; 35412e9a14SMatthew G. Knepley case 3: 36412e9a14SMatthew G. Knepley ierr = DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_TRI_PRISM_TENSOR, cStart, cEnd);CHKERRQ(ierr); 37412e9a14SMatthew G. Knepley if (*cStart < 0) {ierr = DMLabelGetStratumBounds(ctLabel, DM_POLYTOPE_QUAD_PRISM_TENSOR, cStart, cEnd);CHKERRQ(ierr);} 38412e9a14SMatthew G. Knepley break; 39412e9a14SMatthew G. Knepley default: PetscFunctionReturn(0); 40412e9a14SMatthew G. Knepley } 41412e9a14SMatthew G. Knepley PetscFunctionReturn(0); 42412e9a14SMatthew G. Knepley } 43412e9a14SMatthew G. Knepley 44e752be1aSMatthew G. Knepley static PetscErrorCode DMPlexMarkBoundaryFaces_Internal(DM dm, PetscInt val, PetscInt cellHeight, DMLabel label) 4530560a7bSMatthew G. Knepley { 4630560a7bSMatthew G. Knepley PetscInt fStart, fEnd, f; 4730560a7bSMatthew G. Knepley PetscErrorCode ierr; 4830560a7bSMatthew G. Knepley 4930560a7bSMatthew G. Knepley PetscFunctionBegin; 5030560a7bSMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, cellHeight+1, &fStart, &fEnd);CHKERRQ(ierr); 5130560a7bSMatthew G. Knepley for (f = fStart; f < fEnd; ++f) { 5230560a7bSMatthew G. Knepley PetscInt supportSize; 5330560a7bSMatthew G. Knepley 5430560a7bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, f, &supportSize);CHKERRQ(ierr); 55e752be1aSMatthew G. Knepley if (supportSize == 1) { 56e752be1aSMatthew G. Knepley if (val < 0) { 57e752be1aSMatthew G. Knepley PetscInt *closure = NULL; 58e752be1aSMatthew G. Knepley PetscInt clSize, cl, cval; 59e752be1aSMatthew G. Knepley 60e752be1aSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure);CHKERRQ(ierr); 61e752be1aSMatthew G. Knepley for (cl = 0; cl < clSize*2; cl += 2) { 62e752be1aSMatthew G. Knepley ierr = DMLabelGetValue(label, closure[cl], &cval);CHKERRQ(ierr); 63e752be1aSMatthew G. Knepley if (cval < 0) continue; 64e752be1aSMatthew G. Knepley ierr = DMLabelSetValue(label, f, cval);CHKERRQ(ierr); 65e752be1aSMatthew G. Knepley break; 66e752be1aSMatthew G. Knepley } 67e752be1aSMatthew G. Knepley if (cl == clSize*2) {ierr = DMLabelSetValue(label, f, 1);CHKERRQ(ierr);} 68e752be1aSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, f, PETSC_TRUE, &clSize, &closure);CHKERRQ(ierr); 69e752be1aSMatthew G. Knepley } else { 70e752be1aSMatthew G. Knepley ierr = DMLabelSetValue(label, f, val);CHKERRQ(ierr); 71e752be1aSMatthew G. Knepley } 72e752be1aSMatthew G. Knepley } 7330560a7bSMatthew G. Knepley } 7430560a7bSMatthew G. Knepley PetscFunctionReturn(0); 7530560a7bSMatthew G. Knepley } 7630560a7bSMatthew G. Knepley 77cd0c2139SMatthew G Knepley /*@ 78cd0c2139SMatthew G Knepley DMPlexMarkBoundaryFaces - Mark all faces on the boundary 79cd0c2139SMatthew G Knepley 80cd0c2139SMatthew G Knepley Not Collective 81cd0c2139SMatthew G Knepley 82cd0c2139SMatthew G Knepley Input Parameter: 83e752be1aSMatthew G. Knepley + dm - The original DM 84e752be1aSMatthew G. Knepley - val - The marker value, or PETSC_DETERMINE to use some value in the closure (or 1 if none are found) 85cd0c2139SMatthew G Knepley 86cd0c2139SMatthew G Knepley Output Parameter: 87e752be1aSMatthew G. Knepley . label - The DMLabel marking boundary faces with the given value 88cd0c2139SMatthew G Knepley 89cd0c2139SMatthew G Knepley Level: developer 90cd0c2139SMatthew G Knepley 91c58f1c22SToby Isaac .seealso: DMLabelCreate(), DMCreateLabel() 9209f723d9SJed Brown @*/ 93e752be1aSMatthew G. Knepley PetscErrorCode DMPlexMarkBoundaryFaces(DM dm, PetscInt val, DMLabel label) 94cd0c2139SMatthew G Knepley { 95827c4036SVaclav Hapla DMPlexInterpolatedFlag flg; 96cd0c2139SMatthew G Knepley PetscErrorCode ierr; 97cd0c2139SMatthew G Knepley 98cd0c2139SMatthew G Knepley PetscFunctionBegin; 99827c4036SVaclav Hapla PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 100827c4036SVaclav Hapla ierr = DMPlexIsInterpolated(dm, &flg);CHKERRQ(ierr); 101827c4036SVaclav Hapla if (flg != DMPLEX_INTERPOLATED_FULL) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM is not fully interpolated on this rank"); 102e752be1aSMatthew G. Knepley ierr = DMPlexMarkBoundaryFaces_Internal(dm, val, 0, label);CHKERRQ(ierr); 103cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 104cd0c2139SMatthew G Knepley } 105cd0c2139SMatthew G Knepley 106c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexLabelComplete_Internal(DM dm, DMLabel label, PetscBool completeCells) 107b0bf5782SToby Isaac { 108b0bf5782SToby Isaac IS valueIS; 109ac51f24eSSander Arens PetscSF sfPoint; 110b0bf5782SToby Isaac const PetscInt *values; 111ac51f24eSSander Arens PetscInt numValues, v, cStart, cEnd, nroots; 112b0bf5782SToby Isaac PetscErrorCode ierr; 113b0bf5782SToby Isaac 114b0bf5782SToby Isaac PetscFunctionBegin; 115b0bf5782SToby Isaac ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 116b0bf5782SToby Isaac ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 117b0bf5782SToby Isaac ierr = DMPlexGetHeightStratum(dm,0,&cStart,&cEnd);CHKERRQ(ierr); 118b0bf5782SToby Isaac ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 119b0bf5782SToby Isaac for (v = 0; v < numValues; ++v) { 120b0bf5782SToby Isaac IS pointIS; 121b0bf5782SToby Isaac const PetscInt *points; 122b0bf5782SToby Isaac PetscInt numPoints, p; 123b0bf5782SToby Isaac 124b0bf5782SToby Isaac ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 125b0bf5782SToby Isaac ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 126b0bf5782SToby Isaac ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 127b0bf5782SToby Isaac for (p = 0; p < numPoints; ++p) { 128b0bf5782SToby Isaac PetscInt q = points[p]; 129b0bf5782SToby Isaac PetscInt *closure = NULL; 130b0bf5782SToby Isaac PetscInt closureSize, c; 131b0bf5782SToby Isaac 132b0bf5782SToby Isaac if (cStart <= q && q < cEnd && !completeCells) { /* skip cells */ 133b0bf5782SToby Isaac continue; 134b0bf5782SToby Isaac } 135b0bf5782SToby Isaac ierr = DMPlexGetTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 136b0bf5782SToby Isaac for (c = 0; c < closureSize*2; c += 2) { 137b0bf5782SToby Isaac ierr = DMLabelSetValue(label, closure[c], values[v]);CHKERRQ(ierr); 138b0bf5782SToby Isaac } 139b0bf5782SToby Isaac ierr = DMPlexRestoreTransitiveClosure(dm, q, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 140b0bf5782SToby Isaac } 141b0bf5782SToby Isaac ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 142b0bf5782SToby Isaac ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 143b0bf5782SToby Isaac } 144b0bf5782SToby Isaac ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 145b0bf5782SToby Isaac ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 146ac51f24eSSander Arens ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 147ac51f24eSSander Arens ierr = PetscSFGetGraph(sfPoint, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 148ac51f24eSSander Arens if (nroots >= 0) { 14926279d81SSanderA DMLabel lblRoots, lblLeaves; 15026279d81SSanderA IS valueIS, pointIS; 15126279d81SSanderA const PetscInt *values; 15226279d81SSanderA PetscInt numValues, v; 15326279d81SSanderA PetscErrorCode ierr; 15426279d81SSanderA 15526279d81SSanderA ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 15626279d81SSanderA /* Pull point contributions from remote leaves into local roots */ 15726279d81SSanderA ierr = DMLabelGather(label, sfPoint, &lblLeaves);CHKERRQ(ierr); 15826279d81SSanderA ierr = DMLabelGetValueIS(lblLeaves, &valueIS);CHKERRQ(ierr); 15926279d81SSanderA ierr = ISGetLocalSize(valueIS, &numValues);CHKERRQ(ierr); 16026279d81SSanderA ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 16126279d81SSanderA for (v = 0; v < numValues; ++v) { 16226279d81SSanderA const PetscInt value = values[v]; 16326279d81SSanderA 16426279d81SSanderA ierr = DMLabelGetStratumIS(lblLeaves, value, &pointIS);CHKERRQ(ierr); 16526279d81SSanderA ierr = DMLabelInsertIS(label, pointIS, value);CHKERRQ(ierr); 16626279d81SSanderA ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 16726279d81SSanderA } 16826279d81SSanderA ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 16926279d81SSanderA ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 17026279d81SSanderA ierr = DMLabelDestroy(&lblLeaves);CHKERRQ(ierr); 17126279d81SSanderA /* Push point contributions from roots into remote leaves */ 17226279d81SSanderA ierr = DMLabelDistribute(label, sfPoint, &lblRoots);CHKERRQ(ierr); 17326279d81SSanderA ierr = DMLabelGetValueIS(lblRoots, &valueIS);CHKERRQ(ierr); 17426279d81SSanderA ierr = ISGetLocalSize(valueIS, &numValues);CHKERRQ(ierr); 17526279d81SSanderA ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 17626279d81SSanderA for (v = 0; v < numValues; ++v) { 17726279d81SSanderA const PetscInt value = values[v]; 17826279d81SSanderA 17926279d81SSanderA ierr = DMLabelGetStratumIS(lblRoots, value, &pointIS);CHKERRQ(ierr); 18026279d81SSanderA ierr = DMLabelInsertIS(label, pointIS, value);CHKERRQ(ierr); 18126279d81SSanderA ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 18226279d81SSanderA } 18326279d81SSanderA ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 18426279d81SSanderA ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 18526279d81SSanderA ierr = DMLabelDestroy(&lblRoots);CHKERRQ(ierr); 18626279d81SSanderA } 187b0bf5782SToby Isaac PetscFunctionReturn(0); 188b0bf5782SToby Isaac } 189b0bf5782SToby Isaac 1902be2b188SMatthew G Knepley /*@ 1912be2b188SMatthew G Knepley DMPlexLabelComplete - Starting with a label marking points on a surface, we add the transitive closure to the surface 1922be2b188SMatthew G Knepley 1932be2b188SMatthew G Knepley Input Parameters: 1942be2b188SMatthew G Knepley + dm - The DM 1952be2b188SMatthew G Knepley - label - A DMLabel marking the surface points 1962be2b188SMatthew G Knepley 1972be2b188SMatthew G Knepley Output Parameter: 1982be2b188SMatthew G Knepley . label - A DMLabel marking all surface points in the transitive closure 1992be2b188SMatthew G Knepley 2002be2b188SMatthew G Knepley Level: developer 2012be2b188SMatthew G Knepley 2022be2b188SMatthew G Knepley .seealso: DMPlexLabelCohesiveComplete() 2032be2b188SMatthew G Knepley @*/ 2042be2b188SMatthew G Knepley PetscErrorCode DMPlexLabelComplete(DM dm, DMLabel label) 2052be2b188SMatthew G Knepley { 2062be2b188SMatthew G Knepley PetscErrorCode ierr; 2072be2b188SMatthew G Knepley 2082be2b188SMatthew G Knepley PetscFunctionBegin; 209b0bf5782SToby Isaac ierr = DMPlexLabelComplete_Internal(dm, label, PETSC_TRUE);CHKERRQ(ierr); 2102be2b188SMatthew G Knepley PetscFunctionReturn(0); 2112be2b188SMatthew G Knepley } 2122be2b188SMatthew G Knepley 2136cf0e42fSMatthew G. Knepley /*@ 214a6e0b375SMatthew G. Knepley DMPlexLabelAddCells - Starting with a label marking points on a surface, we add a cell for each point 2156cf0e42fSMatthew G. Knepley 2166cf0e42fSMatthew G. Knepley Input Parameters: 2176cf0e42fSMatthew G. Knepley + dm - The DM 2186cf0e42fSMatthew G. Knepley - label - A DMLabel marking the surface points 2196cf0e42fSMatthew G. Knepley 2206cf0e42fSMatthew G. Knepley Output Parameter: 2216cf0e42fSMatthew G. Knepley . label - A DMLabel incorporating cells 2226cf0e42fSMatthew G. Knepley 2236cf0e42fSMatthew G. Knepley Level: developer 2246cf0e42fSMatthew G. Knepley 2256cf0e42fSMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 2266cf0e42fSMatthew G. Knepley 227a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddFaceCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 2286cf0e42fSMatthew G. Knepley @*/ 2296cf0e42fSMatthew G. Knepley PetscErrorCode DMPlexLabelAddCells(DM dm, DMLabel label) 2306cf0e42fSMatthew G. Knepley { 2316cf0e42fSMatthew G. Knepley IS valueIS; 2326cf0e42fSMatthew G. Knepley const PetscInt *values; 233485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 2346cf0e42fSMatthew G. Knepley PetscErrorCode ierr; 2356cf0e42fSMatthew G. Knepley 2366cf0e42fSMatthew G. Knepley PetscFunctionBegin; 237412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 2386cf0e42fSMatthew G. Knepley ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 2396cf0e42fSMatthew G. Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 2406cf0e42fSMatthew G. Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 2416cf0e42fSMatthew G. Knepley for (v = 0; v < numValues; ++v) { 2426cf0e42fSMatthew G. Knepley IS pointIS; 2436cf0e42fSMatthew G. Knepley const PetscInt *points; 2446cf0e42fSMatthew G. Knepley PetscInt numPoints, p; 2456cf0e42fSMatthew G. Knepley 2466cf0e42fSMatthew G. Knepley ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 2476cf0e42fSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 2486cf0e42fSMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 2496cf0e42fSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 2506cf0e42fSMatthew G. Knepley PetscInt *closure = NULL; 251a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 2526cf0e42fSMatthew G. Knepley 2536cf0e42fSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 25422eabd52SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 255a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 256a6e0b375SMatthew G. Knepley if ((cell >= cStart) && (cell < cEnd)) {ierr = DMLabelSetValue(label, cell, values[v]);CHKERRQ(ierr); break;} 25722eabd52SMatthew G. Knepley } 2586cf0e42fSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 2596cf0e42fSMatthew G. Knepley } 2606cf0e42fSMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 2616cf0e42fSMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 2626cf0e42fSMatthew G. Knepley } 2636cf0e42fSMatthew G. Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 2646cf0e42fSMatthew G. Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 2656cf0e42fSMatthew G. Knepley PetscFunctionReturn(0); 2666cf0e42fSMatthew G. Knepley } 2676cf0e42fSMatthew G. Knepley 268f402d5e4SToby Isaac /*@ 269a6e0b375SMatthew G. Knepley DMPlexLabelAddFaceCells - Starting with a label marking faces on a surface, we add a cell for each face 270a6e0b375SMatthew G. Knepley 271a6e0b375SMatthew G. Knepley Input Parameters: 272a6e0b375SMatthew G. Knepley + dm - The DM 273a6e0b375SMatthew G. Knepley - label - A DMLabel marking the surface points 274a6e0b375SMatthew G. Knepley 275a6e0b375SMatthew G. Knepley Output Parameter: 276a6e0b375SMatthew G. Knepley . label - A DMLabel incorporating cells 277a6e0b375SMatthew G. Knepley 278a6e0b375SMatthew G. Knepley Level: developer 279a6e0b375SMatthew G. Knepley 280a6e0b375SMatthew G. Knepley Note: The cells allow FEM boundary conditions to be applied using the cell geometry 281a6e0b375SMatthew G. Knepley 282a6e0b375SMatthew G. Knepley .seealso: DMPlexLabelAddCells(), DMPlexLabelComplete(), DMPlexLabelCohesiveComplete() 283a6e0b375SMatthew G. Knepley @*/ 284a6e0b375SMatthew G. Knepley PetscErrorCode DMPlexLabelAddFaceCells(DM dm, DMLabel label) 285a6e0b375SMatthew G. Knepley { 286a6e0b375SMatthew G. Knepley IS valueIS; 287a6e0b375SMatthew G. Knepley const PetscInt *values; 288a6e0b375SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd, fStart, fEnd; 289a6e0b375SMatthew G. Knepley PetscErrorCode ierr; 290a6e0b375SMatthew G. Knepley 291a6e0b375SMatthew G. Knepley PetscFunctionBegin; 292412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 293a6e0b375SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 294a6e0b375SMatthew G. Knepley ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 295a6e0b375SMatthew G. Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 296a6e0b375SMatthew G. Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 297a6e0b375SMatthew G. Knepley for (v = 0; v < numValues; ++v) { 298a6e0b375SMatthew G. Knepley IS pointIS; 299a6e0b375SMatthew G. Knepley const PetscInt *points; 300a6e0b375SMatthew G. Knepley PetscInt numPoints, p; 301a6e0b375SMatthew G. Knepley 302a6e0b375SMatthew G. Knepley ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 303a6e0b375SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 304a6e0b375SMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 305a6e0b375SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 306a6e0b375SMatthew G. Knepley const PetscInt face = points[p]; 307a6e0b375SMatthew G. Knepley PetscInt *closure = NULL; 308a6e0b375SMatthew G. Knepley PetscInt closureSize, cl; 309a6e0b375SMatthew G. Knepley 310a6e0b375SMatthew G. Knepley if ((face < fStart) || (face >= fEnd)) continue; 311a6e0b375SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 312a6e0b375SMatthew G. Knepley for (cl = closureSize-1; cl > 0; --cl) { 313a6e0b375SMatthew G. Knepley const PetscInt cell = closure[cl*2]; 314a6e0b375SMatthew G. Knepley if ((cell >= cStart) && (cell < cEnd)) {ierr = DMLabelSetValue(label, cell, values[v]);CHKERRQ(ierr); break;} 315a6e0b375SMatthew G. Knepley } 316a6e0b375SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, face, PETSC_FALSE, &closureSize, &closure);CHKERRQ(ierr); 317a6e0b375SMatthew G. Knepley } 318a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 319a6e0b375SMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 320a6e0b375SMatthew G. Knepley } 321a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 322a6e0b375SMatthew G. Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 323a6e0b375SMatthew G. Knepley PetscFunctionReturn(0); 324a6e0b375SMatthew G. Knepley } 325a6e0b375SMatthew G. Knepley 326a6e0b375SMatthew G. Knepley /*@ 327f402d5e4SToby Isaac DMPlexLabelClearCells - Remove cells from a label 328f402d5e4SToby Isaac 329f402d5e4SToby Isaac Input Parameters: 330f402d5e4SToby Isaac + dm - The DM 331f402d5e4SToby Isaac - label - A DMLabel marking surface points and their adjacent cells 332f402d5e4SToby Isaac 333f402d5e4SToby Isaac Output Parameter: 334f402d5e4SToby Isaac . label - A DMLabel without cells 335f402d5e4SToby Isaac 336f402d5e4SToby Isaac Level: developer 337f402d5e4SToby Isaac 338a6e0b375SMatthew G. Knepley Note: This undoes DMPlexLabelAddCells() or DMPlexLabelAddFaceCells() 339f402d5e4SToby Isaac 340f402d5e4SToby Isaac .seealso: DMPlexLabelComplete(), DMPlexLabelCohesiveComplete(), DMPlexLabelAddCells() 341f402d5e4SToby Isaac @*/ 342f402d5e4SToby Isaac PetscErrorCode DMPlexLabelClearCells(DM dm, DMLabel label) 343f402d5e4SToby Isaac { 344f402d5e4SToby Isaac IS valueIS; 345f402d5e4SToby Isaac const PetscInt *values; 346485ad865SMatthew G. Knepley PetscInt numValues, v, cStart, cEnd; 347f402d5e4SToby Isaac PetscErrorCode ierr; 348f402d5e4SToby Isaac 349f402d5e4SToby Isaac PetscFunctionBegin; 350412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 351f402d5e4SToby Isaac ierr = DMLabelGetNumValues(label, &numValues);CHKERRQ(ierr); 352f402d5e4SToby Isaac ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 353f402d5e4SToby Isaac ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 354f402d5e4SToby Isaac for (v = 0; v < numValues; ++v) { 355f402d5e4SToby Isaac IS pointIS; 356f402d5e4SToby Isaac const PetscInt *points; 357f402d5e4SToby Isaac PetscInt numPoints, p; 358f402d5e4SToby Isaac 359f402d5e4SToby Isaac ierr = DMLabelGetStratumSize(label, values[v], &numPoints);CHKERRQ(ierr); 360f402d5e4SToby Isaac ierr = DMLabelGetStratumIS(label, values[v], &pointIS);CHKERRQ(ierr); 361f402d5e4SToby Isaac ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 362f402d5e4SToby Isaac for (p = 0; p < numPoints; ++p) { 363f402d5e4SToby Isaac PetscInt point = points[p]; 364f402d5e4SToby Isaac 365f402d5e4SToby Isaac if (point >= cStart && point < cEnd) { 366f402d5e4SToby Isaac ierr = DMLabelClearValue(label,point,values[v]);CHKERRQ(ierr); 367f402d5e4SToby Isaac } 368f402d5e4SToby Isaac } 369f402d5e4SToby Isaac ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 370f402d5e4SToby Isaac ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 371f402d5e4SToby Isaac } 372f402d5e4SToby Isaac ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 373f402d5e4SToby Isaac ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 374f402d5e4SToby Isaac PetscFunctionReturn(0); 375f402d5e4SToby Isaac } 376f402d5e4SToby Isaac 37759eef20bSToby Isaac /* take (oldEnd, added) pairs, ordered by height and convert them to (oldstart, newstart) pairs, ordered by ascending 37859eef20bSToby Isaac * index (skipping first, which is (0,0)) */ 3792582d50cSToby Isaac PETSC_STATIC_INLINE PetscErrorCode DMPlexShiftPointSetUp_Internal(PetscInt depth, PetscInt depthShift[]) 380cd0c2139SMatthew G Knepley { 3812582d50cSToby Isaac PetscInt d, off = 0; 3822582d50cSToby Isaac 3832582d50cSToby Isaac PetscFunctionBegin; 38459eef20bSToby Isaac /* sort by (oldend): yes this is an O(n^2) sort, we expect depth <= 3 */ 3850974a383SToby Isaac for (d = 0; d < depth; d++) { 3862582d50cSToby Isaac PetscInt firstd = d; 3870974a383SToby Isaac PetscInt firstStart = depthShift[2*d]; 3882582d50cSToby Isaac PetscInt e; 3892582d50cSToby Isaac 3902582d50cSToby Isaac for (e = d+1; e <= depth; e++) { 3912582d50cSToby Isaac if (depthShift[2*e] < firstStart) { 3922582d50cSToby Isaac firstd = e; 3932582d50cSToby Isaac firstStart = depthShift[2*d]; 3942582d50cSToby Isaac } 3952582d50cSToby Isaac } 3962582d50cSToby Isaac if (firstd != d) { 3972582d50cSToby Isaac PetscInt swap[2]; 3982582d50cSToby Isaac 3992582d50cSToby Isaac e = firstd; 4002582d50cSToby Isaac swap[0] = depthShift[2*d]; 4012582d50cSToby Isaac swap[1] = depthShift[2*d+1]; 4022582d50cSToby Isaac depthShift[2*d] = depthShift[2*e]; 4032582d50cSToby Isaac depthShift[2*d+1] = depthShift[2*e+1]; 4042582d50cSToby Isaac depthShift[2*e] = swap[0]; 4052582d50cSToby Isaac depthShift[2*e+1] = swap[1]; 4062582d50cSToby Isaac } 4072582d50cSToby Isaac } 4082582d50cSToby Isaac /* convert (oldstart, added) to (oldstart, newstart) */ 4090974a383SToby Isaac for (d = 0; d <= depth; d++) { 4102582d50cSToby Isaac off += depthShift[2*d+1]; 41159eef20bSToby Isaac depthShift[2*d+1] = depthShift[2*d] + off; 4122582d50cSToby Isaac } 4132582d50cSToby Isaac PetscFunctionReturn(0); 4142582d50cSToby Isaac } 4152582d50cSToby Isaac 4162582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4172582d50cSToby Isaac PETSC_STATIC_INLINE PetscInt DMPlexShiftPoint_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4182582d50cSToby Isaac { 4192582d50cSToby Isaac PetscInt d; 4202582d50cSToby Isaac PetscInt newOff = 0; 4212582d50cSToby Isaac 4222582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4232582d50cSToby Isaac if (p < depthShift[2*d]) return p + newOff; 4242582d50cSToby Isaac else newOff = depthShift[2*d+1] - depthShift[2*d]; 4252582d50cSToby Isaac } 4260974a383SToby Isaac return p + newOff; 4272582d50cSToby Isaac } 4282582d50cSToby Isaac 4292582d50cSToby Isaac /* depthShift is a list of (old, new) pairs */ 4302582d50cSToby Isaac PETSC_STATIC_INLINE PetscInt DMPlexShiftPointInverse_Internal(PetscInt p, PetscInt depth, PetscInt depthShift[]) 4312582d50cSToby Isaac { 4322582d50cSToby Isaac PetscInt d; 4332582d50cSToby Isaac PetscInt newOff = 0; 4342582d50cSToby Isaac 4352582d50cSToby Isaac for (d = 0; d <= depth; d++) { 4362582d50cSToby Isaac if (p < depthShift[2*d+1]) return p + newOff; 4372582d50cSToby Isaac else newOff = depthShift[2*d] - depthShift[2*d+1]; 4382582d50cSToby Isaac } 4390974a383SToby Isaac return p + newOff; 440cd0c2139SMatthew G Knepley } 441cd0c2139SMatthew G Knepley 442cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSizes_Internal(DM dm, PetscInt depthShift[], DM dmNew) 443cd0c2139SMatthew G Knepley { 444cd0c2139SMatthew G Knepley PetscInt depth = 0, d, pStart, pEnd, p; 445fa8e8ae5SToby Isaac DMLabel depthLabel; 446cd0c2139SMatthew G Knepley PetscErrorCode ierr; 447cd0c2139SMatthew G Knepley 448cd0c2139SMatthew G Knepley PetscFunctionBegin; 449cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 450cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 451cd0c2139SMatthew G Knepley /* Step 1: Expand chart */ 452cd0c2139SMatthew G Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 4530974a383SToby Isaac pEnd = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 454cd0c2139SMatthew G Knepley ierr = DMPlexSetChart(dmNew, pStart, pEnd);CHKERRQ(ierr); 455fa8e8ae5SToby Isaac ierr = DMCreateLabel(dmNew,"depth");CHKERRQ(ierr); 456fa8e8ae5SToby Isaac ierr = DMPlexGetDepthLabel(dmNew,&depthLabel);CHKERRQ(ierr); 457412e9a14SMatthew G. Knepley ierr = DMCreateLabel(dmNew, "celltype");CHKERRQ(ierr); 458cd0c2139SMatthew G Knepley /* Step 2: Set cone and support sizes */ 459cd0c2139SMatthew G Knepley for (d = 0; d <= depth; ++d) { 460fa8e8ae5SToby Isaac PetscInt pStartNew, pEndNew; 461fa8e8ae5SToby Isaac IS pIS; 462fa8e8ae5SToby Isaac 463cd0c2139SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, d, &pStart, &pEnd);CHKERRQ(ierr); 464fa8e8ae5SToby Isaac pStartNew = DMPlexShiftPoint_Internal(pStart, depth, depthShift); 465fa8e8ae5SToby Isaac pEndNew = DMPlexShiftPoint_Internal(pEnd, depth, depthShift); 466fa8e8ae5SToby Isaac ierr = ISCreateStride(PETSC_COMM_SELF, pEndNew - pStartNew, pStartNew, 1, &pIS);CHKERRQ(ierr); 467fa8e8ae5SToby Isaac ierr = DMLabelSetStratumIS(depthLabel, d, pIS);CHKERRQ(ierr); 468fa8e8ae5SToby Isaac ierr = ISDestroy(&pIS);CHKERRQ(ierr); 469cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 4702582d50cSToby Isaac PetscInt newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 471cd0c2139SMatthew G Knepley PetscInt size; 472412e9a14SMatthew G. Knepley DMPolytopeType ct; 473cd0c2139SMatthew G Knepley 474cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &size);CHKERRQ(ierr); 475cd0c2139SMatthew G Knepley ierr = DMPlexSetConeSize(dmNew, newp, size);CHKERRQ(ierr); 476cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, p, &size);CHKERRQ(ierr); 477cd0c2139SMatthew G Knepley ierr = DMPlexSetSupportSize(dmNew, newp, size);CHKERRQ(ierr); 478412e9a14SMatthew G. Knepley ierr = DMPlexGetCellType(dm, p, &ct);CHKERRQ(ierr); 479412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(dmNew, newp, ct);CHKERRQ(ierr); 480cd0c2139SMatthew G Knepley } 481cd0c2139SMatthew G Knepley } 482cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 483cd0c2139SMatthew G Knepley } 484cd0c2139SMatthew G Knepley 485cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftPoints_Internal(DM dm, PetscInt depthShift[], DM dmNew) 486cd0c2139SMatthew G Knepley { 4872582d50cSToby Isaac PetscInt *newpoints; 4882582d50cSToby Isaac PetscInt depth = 0, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, pStart, pEnd, p; 489cd0c2139SMatthew G Knepley PetscErrorCode ierr; 490cd0c2139SMatthew G Knepley 491cd0c2139SMatthew G Knepley PetscFunctionBegin; 492cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 493cd0c2139SMatthew G Knepley if (depth < 0) PetscFunctionReturn(0); 494cd0c2139SMatthew G Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 495dcbb62e8SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dmNew, &maxConeSizeNew, &maxSupportSizeNew);CHKERRQ(ierr); 4962582d50cSToby Isaac ierr = PetscMalloc1(PetscMax(PetscMax(maxConeSize, maxSupportSize), PetscMax(maxConeSizeNew, maxSupportSizeNew)),&newpoints);CHKERRQ(ierr); 497cd0c2139SMatthew G Knepley /* Step 5: Set cones and supports */ 498cd0c2139SMatthew G Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 499cd0c2139SMatthew G Knepley for (p = pStart; p < pEnd; ++p) { 500cd0c2139SMatthew G Knepley const PetscInt *points = NULL, *orientations = NULL; 5012582d50cSToby Isaac PetscInt size,sizeNew, i, newp = DMPlexShiftPoint_Internal(p, depth, depthShift); 502cd0c2139SMatthew G Knepley 503cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, p, &size);CHKERRQ(ierr); 504cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, p, &points);CHKERRQ(ierr); 505cd0c2139SMatthew G Knepley ierr = DMPlexGetConeOrientation(dm, p, &orientations);CHKERRQ(ierr); 506cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 5072582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 508cd0c2139SMatthew G Knepley } 509cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(dmNew, newp, newpoints);CHKERRQ(ierr); 510cd0c2139SMatthew G Knepley ierr = DMPlexSetConeOrientation(dmNew, newp, orientations);CHKERRQ(ierr); 511cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, p, &size);CHKERRQ(ierr); 512dcbb62e8SMatthew G. Knepley ierr = DMPlexGetSupportSize(dmNew, newp, &sizeNew);CHKERRQ(ierr); 513cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, p, &points);CHKERRQ(ierr); 514cd0c2139SMatthew G Knepley for (i = 0; i < size; ++i) { 5152582d50cSToby Isaac newpoints[i] = DMPlexShiftPoint_Internal(points[i], depth, depthShift); 516cd0c2139SMatthew G Knepley } 517dcbb62e8SMatthew G. Knepley for (i = size; i < sizeNew; ++i) newpoints[i] = 0; 518cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(dmNew, newp, newpoints);CHKERRQ(ierr); 519cd0c2139SMatthew G Knepley } 5202582d50cSToby Isaac ierr = PetscFree(newpoints);CHKERRQ(ierr); 521cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 522cd0c2139SMatthew G Knepley } 523cd0c2139SMatthew G Knepley 524cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftCoordinates_Internal(DM dm, PetscInt depthShift[], DM dmNew) 525cd0c2139SMatthew G Knepley { 526cd0c2139SMatthew G Knepley PetscSection coordSection, newCoordSection; 527cd0c2139SMatthew G Knepley Vec coordinates, newCoordinates; 528cd0c2139SMatthew G Knepley PetscScalar *coords, *newCoords; 529f2b8cce1SMatthew G. Knepley PetscInt coordSize, sStart, sEnd; 530f2b8cce1SMatthew G. Knepley PetscInt dim, depth = 0, cStart, cEnd, cStartNew, cEndNew, c, vStart, vEnd, vStartNew, vEndNew, v; 531f2b8cce1SMatthew G. Knepley PetscBool hasCells; 532cd0c2139SMatthew G Knepley PetscErrorCode ierr; 533cd0c2139SMatthew G Knepley 534cd0c2139SMatthew G Knepley PetscFunctionBegin; 535f2b8cce1SMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &dim);CHKERRQ(ierr); 536c0e8cf5fSMatthew G. Knepley ierr = DMSetCoordinateDim(dmNew, dim);CHKERRQ(ierr); 537cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 538cd0c2139SMatthew G Knepley /* Step 8: Convert coordinates */ 539cd0c2139SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 540f2b8cce1SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 541cd0c2139SMatthew G Knepley ierr = DMPlexGetDepthStratum(dmNew, 0, &vStartNew, &vEndNew);CHKERRQ(ierr); 542f2b8cce1SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dmNew, 0, &cStartNew, &cEndNew);CHKERRQ(ierr); 54369d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 544cd0c2139SMatthew G Knepley ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dm), &newCoordSection);CHKERRQ(ierr); 545cd0c2139SMatthew G Knepley ierr = PetscSectionSetNumFields(newCoordSection, 1);CHKERRQ(ierr); 546cd0c2139SMatthew G Knepley ierr = PetscSectionSetFieldComponents(newCoordSection, 0, dim);CHKERRQ(ierr); 547f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetChart(coordSection, &sStart, &sEnd);CHKERRQ(ierr); 548f2b8cce1SMatthew G. Knepley hasCells = sStart == cStart ? PETSC_TRUE : PETSC_FALSE; 549f2b8cce1SMatthew G. Knepley ierr = PetscSectionSetChart(newCoordSection, hasCells ? cStartNew : vStartNew, vEndNew);CHKERRQ(ierr); 550f2b8cce1SMatthew G. Knepley if (hasCells) { 551f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 552f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof; 553f2b8cce1SMatthew G. Knepley 554f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, c, &dof);CHKERRQ(ierr); 555f2b8cce1SMatthew G. Knepley ierr = PetscSectionSetDof(newCoordSection, cNew, dof);CHKERRQ(ierr); 556f2b8cce1SMatthew G. Knepley ierr = PetscSectionSetFieldDof(newCoordSection, cNew, 0, dof);CHKERRQ(ierr); 557f2b8cce1SMatthew G. Knepley } 558f2b8cce1SMatthew G. Knepley } 559cd0c2139SMatthew G Knepley for (v = vStartNew; v < vEndNew; ++v) { 560cd0c2139SMatthew G Knepley ierr = PetscSectionSetDof(newCoordSection, v, dim);CHKERRQ(ierr); 561cd0c2139SMatthew G Knepley ierr = PetscSectionSetFieldDof(newCoordSection, v, 0, dim);CHKERRQ(ierr); 562cd0c2139SMatthew G Knepley } 563cd0c2139SMatthew G Knepley ierr = PetscSectionSetUp(newCoordSection);CHKERRQ(ierr); 56446e270d4SMatthew G. Knepley ierr = DMSetCoordinateSection(dmNew, PETSC_DETERMINE, newCoordSection);CHKERRQ(ierr); 565cd0c2139SMatthew G Knepley ierr = PetscSectionGetStorageSize(newCoordSection, &coordSize);CHKERRQ(ierr); 5668b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &newCoordinates);CHKERRQ(ierr); 567cd0c2139SMatthew G Knepley ierr = PetscObjectSetName((PetscObject) newCoordinates, "coordinates");CHKERRQ(ierr); 568cd0c2139SMatthew G Knepley ierr = VecSetSizes(newCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 5694e90ef8eSMatthew G. Knepley ierr = VecSetBlockSize(newCoordinates, dim);CHKERRQ(ierr); 5702eb5907fSJed Brown ierr = VecSetType(newCoordinates,VECSTANDARD);CHKERRQ(ierr); 571cd0c2139SMatthew G Knepley ierr = DMSetCoordinatesLocal(dmNew, newCoordinates);CHKERRQ(ierr); 572cd0c2139SMatthew G Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 573cd0c2139SMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 574cd0c2139SMatthew G Knepley ierr = VecGetArray(newCoordinates, &newCoords);CHKERRQ(ierr); 575f2b8cce1SMatthew G. Knepley if (hasCells) { 576f2b8cce1SMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 577f2b8cce1SMatthew G. Knepley PetscInt cNew = DMPlexShiftPoint_Internal(c, depth, depthShift), dof, off, noff, d; 578f2b8cce1SMatthew G. Knepley 579f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, c, &dof);CHKERRQ(ierr); 580f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetOffset(coordSection, c, &off);CHKERRQ(ierr); 581f2b8cce1SMatthew G. Knepley ierr = PetscSectionGetOffset(newCoordSection, cNew, &noff);CHKERRQ(ierr); 582f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 583f2b8cce1SMatthew G. Knepley } 584f2b8cce1SMatthew G. Knepley } 585cd0c2139SMatthew G Knepley for (v = vStart; v < vEnd; ++v) { 586cd0c2139SMatthew G Knepley PetscInt dof, off, noff, d; 587cd0c2139SMatthew G Knepley 588cd0c2139SMatthew G Knepley ierr = PetscSectionGetDof(coordSection, v, &dof);CHKERRQ(ierr); 589cd0c2139SMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, v, &off);CHKERRQ(ierr); 5902582d50cSToby Isaac ierr = PetscSectionGetOffset(newCoordSection, DMPlexShiftPoint_Internal(v, depth, depthShift), &noff);CHKERRQ(ierr); 591f2b8cce1SMatthew G. Knepley for (d = 0; d < dof; ++d) newCoords[noff+d] = coords[off+d]; 592cd0c2139SMatthew G Knepley } 593cd0c2139SMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 594cd0c2139SMatthew G Knepley ierr = VecRestoreArray(newCoordinates, &newCoords);CHKERRQ(ierr); 595cd0c2139SMatthew G Knepley ierr = VecDestroy(&newCoordinates);CHKERRQ(ierr); 596cd0c2139SMatthew G Knepley ierr = PetscSectionDestroy(&newCoordSection);CHKERRQ(ierr); 597cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 598cd0c2139SMatthew G Knepley } 599cd0c2139SMatthew G Knepley 600cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftSF_Internal(DM dm, PetscInt depthShift[], DM dmNew) 601cd0c2139SMatthew G Knepley { 6022582d50cSToby Isaac PetscInt depth = 0; 603cd0c2139SMatthew G Knepley PetscSF sfPoint, sfPointNew; 604cd0c2139SMatthew G Knepley const PetscSFNode *remotePoints; 605cd0c2139SMatthew G Knepley PetscSFNode *gremotePoints; 606cd0c2139SMatthew G Knepley const PetscInt *localPoints; 607cd0c2139SMatthew G Knepley PetscInt *glocalPoints, *newLocation, *newRemoteLocation; 608cd0c2139SMatthew G Knepley PetscInt numRoots, numLeaves, l, pStart, pEnd, totShift = 0; 609cd0c2139SMatthew G Knepley PetscErrorCode ierr; 610cd0c2139SMatthew G Knepley 611cd0c2139SMatthew G Knepley PetscFunctionBegin; 612cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 613cd0c2139SMatthew G Knepley /* Step 9: Convert pointSF */ 614cd0c2139SMatthew G Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 615cd0c2139SMatthew G Knepley ierr = DMGetPointSF(dmNew, &sfPointNew);CHKERRQ(ierr); 616cd0c2139SMatthew G Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 617cd0c2139SMatthew G Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 6186e21efdcSToby Isaac totShift = DMPlexShiftPoint_Internal(pEnd,depth,depthShift) - pEnd; 619cd0c2139SMatthew G Knepley if (numRoots >= 0) { 620dcca6d9dSJed Brown ierr = PetscMalloc2(numRoots,&newLocation,pEnd-pStart,&newRemoteLocation);CHKERRQ(ierr); 6212582d50cSToby Isaac for (l=0; l<numRoots; l++) newLocation[l] = DMPlexShiftPoint_Internal(l, depth, depthShift); 622cd0c2139SMatthew G Knepley ierr = PetscSFBcastBegin(sfPoint, MPIU_INT, newLocation, newRemoteLocation);CHKERRQ(ierr); 623cd0c2139SMatthew G Knepley ierr = PetscSFBcastEnd(sfPoint, MPIU_INT, newLocation, newRemoteLocation);CHKERRQ(ierr); 624785e854fSJed Brown ierr = PetscMalloc1(numLeaves, &glocalPoints);CHKERRQ(ierr); 625785e854fSJed Brown ierr = PetscMalloc1(numLeaves, &gremotePoints);CHKERRQ(ierr); 626cd0c2139SMatthew G Knepley for (l = 0; l < numLeaves; ++l) { 6272582d50cSToby Isaac glocalPoints[l] = DMPlexShiftPoint_Internal(localPoints[l], depth, depthShift); 628cd0c2139SMatthew G Knepley gremotePoints[l].rank = remotePoints[l].rank; 629cd0c2139SMatthew G Knepley gremotePoints[l].index = newRemoteLocation[localPoints[l]]; 630cd0c2139SMatthew G Knepley } 631cd0c2139SMatthew G Knepley ierr = PetscFree2(newLocation,newRemoteLocation);CHKERRQ(ierr); 632cd0c2139SMatthew G Knepley ierr = PetscSFSetGraph(sfPointNew, numRoots + totShift, numLeaves, glocalPoints, PETSC_OWN_POINTER, gremotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 633cd0c2139SMatthew G Knepley } 634cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 635cd0c2139SMatthew G Knepley } 636cd0c2139SMatthew G Knepley 637cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexShiftLabels_Internal(DM dm, PetscInt depthShift[], DM dmNew) 638cd0c2139SMatthew G Knepley { 639cd0c2139SMatthew G Knepley PetscSF sfPoint; 640cd0c2139SMatthew G Knepley DMLabel vtkLabel, ghostLabel; 641cd0c2139SMatthew G Knepley const PetscSFNode *leafRemote; 642cd0c2139SMatthew G Knepley const PetscInt *leafLocal; 6432582d50cSToby Isaac PetscInt depth = 0, numLeaves, numLabels, l, cStart, cEnd, c, fStart, fEnd, f; 644cd0c2139SMatthew G Knepley PetscMPIInt rank; 645cd0c2139SMatthew G Knepley PetscErrorCode ierr; 646cd0c2139SMatthew G Knepley 647cd0c2139SMatthew G Knepley PetscFunctionBegin; 648cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 649cd0c2139SMatthew G Knepley /* Step 10: Convert labels */ 650c58f1c22SToby Isaac ierr = DMGetNumLabels(dm, &numLabels);CHKERRQ(ierr); 651cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 652cd0c2139SMatthew G Knepley DMLabel label, newlabel; 653cd0c2139SMatthew G Knepley const char *lname; 654fa8e8ae5SToby Isaac PetscBool isDepth, isDim; 655cd0c2139SMatthew G Knepley IS valueIS; 656cd0c2139SMatthew G Knepley const PetscInt *values; 657cd0c2139SMatthew G Knepley PetscInt numValues, val; 658cd0c2139SMatthew G Knepley 659c58f1c22SToby Isaac ierr = DMGetLabelName(dm, l, &lname);CHKERRQ(ierr); 660cd0c2139SMatthew G Knepley ierr = PetscStrcmp(lname, "depth", &isDepth);CHKERRQ(ierr); 661cd0c2139SMatthew G Knepley if (isDepth) continue; 662fa8e8ae5SToby Isaac ierr = PetscStrcmp(lname, "dim", &isDim);CHKERRQ(ierr); 663fa8e8ae5SToby Isaac if (isDim) continue; 664c58f1c22SToby Isaac ierr = DMCreateLabel(dmNew, lname);CHKERRQ(ierr); 665c58f1c22SToby Isaac ierr = DMGetLabel(dm, lname, &label);CHKERRQ(ierr); 666c58f1c22SToby Isaac ierr = DMGetLabel(dmNew, lname, &newlabel);CHKERRQ(ierr); 66764a6a1a4SToby Isaac ierr = DMLabelGetDefaultValue(label,&val);CHKERRQ(ierr); 66864a6a1a4SToby Isaac ierr = DMLabelSetDefaultValue(newlabel,val);CHKERRQ(ierr); 669cd0c2139SMatthew G Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 670cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(valueIS, &numValues);CHKERRQ(ierr); 671cd0c2139SMatthew G Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 672cd0c2139SMatthew G Knepley for (val = 0; val < numValues; ++val) { 673cd0c2139SMatthew G Knepley IS pointIS; 674cd0c2139SMatthew G Knepley const PetscInt *points; 675cd0c2139SMatthew G Knepley PetscInt numPoints, p; 676cd0c2139SMatthew G Knepley 677cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, values[val], &pointIS);CHKERRQ(ierr); 678cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(pointIS, &numPoints);CHKERRQ(ierr); 679cd0c2139SMatthew G Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 680cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 6812582d50cSToby Isaac const PetscInt newpoint = DMPlexShiftPoint_Internal(points[p], depth, depthShift); 682cd0c2139SMatthew G Knepley 683cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(newlabel, newpoint, values[val]);CHKERRQ(ierr); 684cd0c2139SMatthew G Knepley } 685cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 686cd0c2139SMatthew G Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 687cd0c2139SMatthew G Knepley } 688cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 689cd0c2139SMatthew G Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 690cd0c2139SMatthew G Knepley } 691cd0c2139SMatthew G Knepley /* Step 11: Make label for output (vtk) and to mark ghost points (ghost) */ 692cd0c2139SMatthew G Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)dm), &rank);CHKERRQ(ierr); 693cd0c2139SMatthew G Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 694cd0c2139SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 695cd0c2139SMatthew G Knepley ierr = PetscSFGetGraph(sfPoint, NULL, &numLeaves, &leafLocal, &leafRemote);CHKERRQ(ierr); 696c58f1c22SToby Isaac ierr = DMCreateLabel(dmNew, "vtk");CHKERRQ(ierr); 697c58f1c22SToby Isaac ierr = DMCreateLabel(dmNew, "ghost");CHKERRQ(ierr); 698c58f1c22SToby Isaac ierr = DMGetLabel(dmNew, "vtk", &vtkLabel);CHKERRQ(ierr); 699c58f1c22SToby Isaac ierr = DMGetLabel(dmNew, "ghost", &ghostLabel);CHKERRQ(ierr); 700cd0c2139SMatthew G Knepley for (l = 0, c = cStart; l < numLeaves && c < cEnd; ++l, ++c) { 701cd0c2139SMatthew G Knepley for (; c < leafLocal[l] && c < cEnd; ++c) { 702cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(vtkLabel, c, 1);CHKERRQ(ierr); 703cd0c2139SMatthew G Knepley } 704cd0c2139SMatthew G Knepley if (leafLocal[l] >= cEnd) break; 705cd0c2139SMatthew G Knepley if (leafRemote[l].rank == rank) { 706cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(vtkLabel, c, 1);CHKERRQ(ierr); 707cd0c2139SMatthew G Knepley } else { 708cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(ghostLabel, c, 2);CHKERRQ(ierr); 709cd0c2139SMatthew G Knepley } 710cd0c2139SMatthew G Knepley } 711cd0c2139SMatthew G Knepley for (; c < cEnd; ++c) { 712cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(vtkLabel, c, 1);CHKERRQ(ierr); 713cd0c2139SMatthew G Knepley } 714cd0c2139SMatthew G Knepley ierr = DMPlexGetHeightStratum(dmNew, 1, &fStart, &fEnd);CHKERRQ(ierr); 715cd0c2139SMatthew G Knepley for (f = fStart; f < fEnd; ++f) { 716cd0c2139SMatthew G Knepley PetscInt numCells; 717cd0c2139SMatthew G Knepley 718cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dmNew, f, &numCells);CHKERRQ(ierr); 719cd0c2139SMatthew G Knepley if (numCells < 2) { 720cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(ghostLabel, f, 1);CHKERRQ(ierr); 721cd0c2139SMatthew G Knepley } else { 722cd0c2139SMatthew G Knepley const PetscInt *cells = NULL; 723cd0c2139SMatthew G Knepley PetscInt vA, vB; 724cd0c2139SMatthew G Knepley 725cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dmNew, f, &cells);CHKERRQ(ierr); 726cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(vtkLabel, cells[0], &vA);CHKERRQ(ierr); 727cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(vtkLabel, cells[1], &vB);CHKERRQ(ierr); 72890664b96SToby Isaac if (vA != 1 && vB != 1) {ierr = DMLabelSetValue(ghostLabel, f, 1);CHKERRQ(ierr);} 729cd0c2139SMatthew G Knepley } 730cd0c2139SMatthew G Knepley } 731cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 732cd0c2139SMatthew G Knepley } 733cd0c2139SMatthew G Knepley 734ca04dac2SToby Isaac static PetscErrorCode DMPlexShiftTree_Internal(DM dm, PetscInt depthShift[], DM dmNew) 735ca04dac2SToby Isaac { 736ca04dac2SToby Isaac DM refTree; 737ca04dac2SToby Isaac PetscSection pSec; 738ca04dac2SToby Isaac PetscInt *parents, *childIDs; 739ca04dac2SToby Isaac PetscErrorCode ierr; 740ca04dac2SToby Isaac 741ca04dac2SToby Isaac PetscFunctionBegin; 742ca04dac2SToby Isaac ierr = DMPlexGetReferenceTree(dm,&refTree);CHKERRQ(ierr); 743ca04dac2SToby Isaac ierr = DMPlexSetReferenceTree(dmNew,refTree);CHKERRQ(ierr); 744ca04dac2SToby Isaac ierr = DMPlexGetTree(dm,&pSec,&parents,&childIDs,NULL,NULL);CHKERRQ(ierr); 745ca04dac2SToby Isaac if (pSec) { 7462582d50cSToby Isaac PetscInt p, pStart, pEnd, *parentsShifted, pStartShifted, pEndShifted, depth; 747fb4630b5SToby Isaac PetscInt *childIDsShifted; 748ca04dac2SToby Isaac PetscSection pSecShifted; 749ca04dac2SToby Isaac 750ca04dac2SToby Isaac ierr = PetscSectionGetChart(pSec,&pStart,&pEnd);CHKERRQ(ierr); 751ca04dac2SToby Isaac ierr = DMPlexGetDepth(dm,&depth);CHKERRQ(ierr); 7522582d50cSToby Isaac pStartShifted = DMPlexShiftPoint_Internal(pStart,depth,depthShift); 7532582d50cSToby Isaac pEndShifted = DMPlexShiftPoint_Internal(pEnd,depth,depthShift); 754fb4630b5SToby Isaac ierr = PetscMalloc2(pEndShifted - pStartShifted,&parentsShifted,pEndShifted-pStartShifted,&childIDsShifted);CHKERRQ(ierr); 755ca04dac2SToby Isaac ierr = PetscSectionCreate(PetscObjectComm((PetscObject)dmNew),&pSecShifted);CHKERRQ(ierr); 756ca04dac2SToby Isaac ierr = PetscSectionSetChart(pSecShifted,pStartShifted,pEndShifted);CHKERRQ(ierr); 757ca04dac2SToby Isaac for (p = pStartShifted; p < pEndShifted; p++) { 758fb4630b5SToby Isaac /* start off assuming no children */ 759fb4630b5SToby Isaac ierr = PetscSectionSetDof(pSecShifted,p,0);CHKERRQ(ierr); 760fb4630b5SToby Isaac } 761fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 762fb4630b5SToby Isaac PetscInt dof; 763fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 764ca04dac2SToby Isaac 765ca04dac2SToby Isaac ierr = PetscSectionGetDof(pSec,p,&dof);CHKERRQ(ierr); 766fb4630b5SToby Isaac ierr = PetscSectionSetDof(pSecShifted,pNew,dof);CHKERRQ(ierr); 767ca04dac2SToby Isaac } 768ca04dac2SToby Isaac ierr = PetscSectionSetUp(pSecShifted);CHKERRQ(ierr); 769fb4630b5SToby Isaac for (p = pStart; p < pEnd; p++) { 770fb4630b5SToby Isaac PetscInt dof; 771fb4630b5SToby Isaac PetscInt pNew = DMPlexShiftPoint_Internal(p,depth,depthShift); 772fb4630b5SToby Isaac 773fb4630b5SToby Isaac ierr = PetscSectionGetDof(pSec,p,&dof);CHKERRQ(ierr); 774fb4630b5SToby Isaac if (dof) { 775fb4630b5SToby Isaac PetscInt off, offNew; 776fb4630b5SToby Isaac 777fb4630b5SToby Isaac ierr = PetscSectionGetOffset(pSec,p,&off);CHKERRQ(ierr); 778fb4630b5SToby Isaac ierr = PetscSectionGetOffset(pSecShifted,pNew,&offNew);CHKERRQ(ierr); 779fb4630b5SToby Isaac parentsShifted[offNew] = DMPlexShiftPoint_Internal(parents[off],depth,depthShift); 780fb4630b5SToby Isaac childIDsShifted[offNew] = childIDs[off]; 781fb4630b5SToby Isaac } 782fb4630b5SToby Isaac } 783fb4630b5SToby Isaac ierr = DMPlexSetTree(dmNew,pSecShifted,parentsShifted,childIDsShifted);CHKERRQ(ierr); 784fb4630b5SToby Isaac ierr = PetscFree2(parentsShifted,childIDsShifted);CHKERRQ(ierr); 785e6885bbbSToby Isaac ierr = PetscSectionDestroy(&pSecShifted);CHKERRQ(ierr); 786ca04dac2SToby Isaac } 787ca04dac2SToby Isaac PetscFunctionReturn(0); 788ca04dac2SToby Isaac } 789ca04dac2SToby Isaac 790cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexConstructGhostCells_Internal(DM dm, DMLabel label, PetscInt *numGhostCells, DM gdm) 791cd0c2139SMatthew G Knepley { 792da97024aSMatthew G. Knepley PetscSF sf; 793cd0c2139SMatthew G Knepley IS valueIS; 794da97024aSMatthew G. Knepley const PetscInt *values, *leaves; 795cd0c2139SMatthew G Knepley PetscInt *depthShift; 7962582d50cSToby Isaac PetscInt d, depth = 0, nleaves, loc, Ng, numFS, fs, fStart, fEnd, ghostCell, cEnd, c; 79790b157c4SStefano Zampini PetscBool isper; 79890b157c4SStefano Zampini const PetscReal *maxCell, *L; 79990b157c4SStefano Zampini const DMBoundaryType *bd; 800cd0c2139SMatthew G Knepley PetscErrorCode ierr; 801cd0c2139SMatthew G Knepley 802cd0c2139SMatthew G Knepley PetscFunctionBegin; 803da97024aSMatthew G. Knepley ierr = DMGetPointSF(dm, &sf);CHKERRQ(ierr); 804da97024aSMatthew G. Knepley ierr = PetscSFGetGraph(sf, NULL, &nleaves, &leaves, NULL);CHKERRQ(ierr); 805da97024aSMatthew G. Knepley nleaves = PetscMax(0, nleaves); 80646c796b9SMatthew G. Knepley ierr = DMPlexGetHeightStratum(dm, 1, &fStart, &fEnd);CHKERRQ(ierr); 807cd0c2139SMatthew G Knepley /* Count ghost cells */ 808cd0c2139SMatthew G Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 809cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(valueIS, &numFS);CHKERRQ(ierr); 810cd0c2139SMatthew G Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 8114a6cfa73SMatthew G. Knepley Ng = 0; 812cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 81346c796b9SMatthew G. Knepley IS faceIS; 81446c796b9SMatthew G. Knepley const PetscInt *faces; 81546c796b9SMatthew G. Knepley PetscInt numFaces, f, numBdFaces = 0; 816cd0c2139SMatthew G Knepley 81746c796b9SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, values[fs], &faceIS);CHKERRQ(ierr); 81846c796b9SMatthew G. Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 81946c796b9SMatthew G. Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 82046c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 821ca04dac2SToby Isaac PetscInt numChildren; 822ca04dac2SToby Isaac 823da97024aSMatthew G. Knepley ierr = PetscFindInt(faces[f], nleaves, leaves, &loc);CHKERRQ(ierr); 824ca04dac2SToby Isaac ierr = DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL);CHKERRQ(ierr); 825ca04dac2SToby Isaac /* non-local and ancestors points don't get to register ghosts */ 826ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 82746c796b9SMatthew G. Knepley if ((faces[f] >= fStart) && (faces[f] < fEnd)) ++numBdFaces; 82846c796b9SMatthew G. Knepley } 8294a6cfa73SMatthew G. Knepley Ng += numBdFaces; 830ba2698f1SMatthew G. Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 83146c796b9SMatthew G. Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 832cd0c2139SMatthew G Knepley } 833cd0c2139SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 8342582d50cSToby Isaac ierr = PetscMalloc1(2*(depth+1), &depthShift);CHKERRQ(ierr); 8352582d50cSToby Isaac for (d = 0; d <= depth; d++) { 83659eef20bSToby Isaac PetscInt dEnd; 8372582d50cSToby Isaac 8380974a383SToby Isaac ierr = DMPlexGetDepthStratum(dm,d,NULL,&dEnd);CHKERRQ(ierr); 83959eef20bSToby Isaac depthShift[2*d] = dEnd; 8402582d50cSToby Isaac depthShift[2*d+1] = 0; 8412582d50cSToby Isaac } 8422582d50cSToby Isaac if (depth >= 0) depthShift[2*depth+1] = Ng; 8432582d50cSToby Isaac ierr = DMPlexShiftPointSetUp_Internal(depth,depthShift);CHKERRQ(ierr); 844cd0c2139SMatthew G Knepley ierr = DMPlexShiftSizes_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 845cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 846cd0c2139SMatthew G Knepley ierr = DMPlexGetHeightStratum(dm, 0, NULL, &cEnd);CHKERRQ(ierr); 8474a6cfa73SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 848cd0c2139SMatthew G Knepley ierr = DMPlexSetConeSize(gdm, c, 1);CHKERRQ(ierr); 849cd0c2139SMatthew G Knepley } 850cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 851cd0c2139SMatthew G Knepley IS faceIS; 852cd0c2139SMatthew G Knepley const PetscInt *faces; 853cd0c2139SMatthew G Knepley PetscInt numFaces, f; 854cd0c2139SMatthew G Knepley 855cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, values[fs], &faceIS);CHKERRQ(ierr); 856cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 857cd0c2139SMatthew G Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 858cd0c2139SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 859ca04dac2SToby Isaac PetscInt size, numChildren; 860cd0c2139SMatthew G Knepley 861da97024aSMatthew G. Knepley ierr = PetscFindInt(faces[f], nleaves, leaves, &loc);CHKERRQ(ierr); 862ca04dac2SToby Isaac ierr = DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL);CHKERRQ(ierr); 863ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 86446c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 865cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, faces[f], &size);CHKERRQ(ierr); 8664553fd90SToby Isaac if (size != 1) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "DM has boundary face %d with %d support cells", faces[f], size); 8674a6cfa73SMatthew G. Knepley ierr = DMPlexSetSupportSize(gdm, faces[f] + Ng, 2);CHKERRQ(ierr); 868cd0c2139SMatthew G Knepley } 869cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 870cd0c2139SMatthew G Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 871cd0c2139SMatthew G Knepley } 872cd0c2139SMatthew G Knepley /* Step 4: Setup ghosted DM */ 873cd0c2139SMatthew G Knepley ierr = DMSetUp(gdm);CHKERRQ(ierr); 874cd0c2139SMatthew G Knepley ierr = DMPlexShiftPoints_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 875cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 876cd0c2139SMatthew G Knepley ghostCell = cEnd; 877cd0c2139SMatthew G Knepley for (fs = 0; fs < numFS; ++fs) { 878cd0c2139SMatthew G Knepley IS faceIS; 879cd0c2139SMatthew G Knepley const PetscInt *faces; 880cd0c2139SMatthew G Knepley PetscInt numFaces, f; 881cd0c2139SMatthew G Knepley 882cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, values[fs], &faceIS);CHKERRQ(ierr); 883cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(faceIS, &numFaces);CHKERRQ(ierr); 884cd0c2139SMatthew G Knepley ierr = ISGetIndices(faceIS, &faces);CHKERRQ(ierr); 88546c796b9SMatthew G. Knepley for (f = 0; f < numFaces; ++f) { 886ca04dac2SToby Isaac PetscInt newFace = faces[f] + Ng, numChildren; 887cd0c2139SMatthew G Knepley 888da97024aSMatthew G. Knepley ierr = PetscFindInt(faces[f], nleaves, leaves, &loc);CHKERRQ(ierr); 889ca04dac2SToby Isaac ierr = DMPlexGetTreeChildren(dm,faces[f],&numChildren,NULL);CHKERRQ(ierr); 890ca04dac2SToby Isaac if (loc >= 0 || numChildren) continue; 89146c796b9SMatthew G. Knepley if ((faces[f] < fStart) || (faces[f] >= fEnd)) continue; 892cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(gdm, ghostCell, &newFace);CHKERRQ(ierr); 893cd0c2139SMatthew G Knepley ierr = DMPlexInsertSupport(gdm, newFace, 1, ghostCell);CHKERRQ(ierr); 89446c796b9SMatthew G. Knepley ++ghostCell; 895cd0c2139SMatthew G Knepley } 896cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(faceIS, &faces);CHKERRQ(ierr); 897cd0c2139SMatthew G Knepley ierr = ISDestroy(&faceIS);CHKERRQ(ierr); 898cd0c2139SMatthew G Knepley } 899cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 900cd0c2139SMatthew G Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 901cd0c2139SMatthew G Knepley ierr = DMPlexShiftCoordinates_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 902cd0c2139SMatthew G Knepley ierr = DMPlexShiftSF_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 903cd0c2139SMatthew G Knepley ierr = DMPlexShiftLabels_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 904ca04dac2SToby Isaac ierr = DMPlexShiftTree_Internal(dm, depthShift, gdm);CHKERRQ(ierr); 905cd0c2139SMatthew G Knepley ierr = PetscFree(depthShift);CHKERRQ(ierr); 906412e9a14SMatthew G. Knepley for (c = cEnd; c < cEnd + Ng; ++c) { 907412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(gdm, c, DM_POLYTOPE_FV_GHOST);CHKERRQ(ierr); 908412e9a14SMatthew G. Knepley } 909966c7b3fSMatthew G. Knepley /* Step 7: Periodicity */ 91090b157c4SStefano Zampini ierr = DMGetPeriodicity(dm, &isper, &maxCell, &L, &bd);CHKERRQ(ierr); 91190b157c4SStefano Zampini ierr = DMSetPeriodicity(gdm, isper, maxCell, L, bd);CHKERRQ(ierr); 9124a6cfa73SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 913cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 914cd0c2139SMatthew G Knepley } 915cd0c2139SMatthew G Knepley 916cd0c2139SMatthew G Knepley /*@C 917cd0c2139SMatthew G Knepley DMPlexConstructGhostCells - Construct ghost cells which connect to every boundary face 918cd0c2139SMatthew G Knepley 919cd0c2139SMatthew G Knepley Collective on dm 920cd0c2139SMatthew G Knepley 921cd0c2139SMatthew G Knepley Input Parameters: 922cd0c2139SMatthew G Knepley + dm - The original DM 923cd0c2139SMatthew G Knepley - labelName - The label specifying the boundary faces, or "Face Sets" if this is NULL 924cd0c2139SMatthew G Knepley 925cd0c2139SMatthew G Knepley Output Parameters: 926cd0c2139SMatthew G Knepley + numGhostCells - The number of ghost cells added to the DM 927cd0c2139SMatthew G Knepley - dmGhosted - The new DM 928cd0c2139SMatthew G Knepley 929cd0c2139SMatthew G Knepley Note: If no label exists of that name, one will be created marking all boundary faces 930cd0c2139SMatthew G Knepley 931cd0c2139SMatthew G Knepley Level: developer 932cd0c2139SMatthew G Knepley 933cd0c2139SMatthew G Knepley .seealso: DMCreate() 93431266bc0SMatthew G. Knepley @*/ 935cd0c2139SMatthew G Knepley PetscErrorCode DMPlexConstructGhostCells(DM dm, const char labelName[], PetscInt *numGhostCells, DM *dmGhosted) 936cd0c2139SMatthew G Knepley { 937cd0c2139SMatthew G Knepley DM gdm; 938cd0c2139SMatthew G Knepley DMLabel label; 939cd0c2139SMatthew G Knepley const char *name = labelName ? labelName : "Face Sets"; 940412e9a14SMatthew G. Knepley PetscInt dim, Ng = 0; 941b0441da4SMatthew G. Knepley PetscBool useCone, useClosure; 942cd0c2139SMatthew G Knepley PetscErrorCode ierr; 943cd0c2139SMatthew G Knepley 944cd0c2139SMatthew G Knepley PetscFunctionBegin; 945cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 9464a6cfa73SMatthew G. Knepley if (numGhostCells) PetscValidPointer(numGhostCells, 3); 947cd0c2139SMatthew G Knepley PetscValidPointer(dmGhosted, 4); 948cd0c2139SMatthew G Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), &gdm);CHKERRQ(ierr); 949cd0c2139SMatthew G Knepley ierr = DMSetType(gdm, DMPLEX);CHKERRQ(ierr); 950c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 951c73cfb54SMatthew G. Knepley ierr = DMSetDimension(gdm, dim);CHKERRQ(ierr); 952b0441da4SMatthew G. Knepley ierr = DMGetBasicAdjacency(dm, &useCone, &useClosure);CHKERRQ(ierr); 953b0441da4SMatthew G. Knepley ierr = DMSetBasicAdjacency(gdm, useCone, useClosure);CHKERRQ(ierr); 954c58f1c22SToby Isaac ierr = DMGetLabel(dm, name, &label);CHKERRQ(ierr); 955cd0c2139SMatthew G Knepley if (!label) { 956cd0c2139SMatthew G Knepley /* Get label for boundary faces */ 957c58f1c22SToby Isaac ierr = DMCreateLabel(dm, name);CHKERRQ(ierr); 958c58f1c22SToby Isaac ierr = DMGetLabel(dm, name, &label);CHKERRQ(ierr); 959e752be1aSMatthew G. Knepley ierr = DMPlexMarkBoundaryFaces(dm, 1, label);CHKERRQ(ierr); 960cd0c2139SMatthew G Knepley } 961d80ece95SMatthew G. Knepley ierr = DMPlexConstructGhostCells_Internal(dm, label, &Ng, gdm);CHKERRQ(ierr); 962a6ba4734SToby Isaac ierr = DMCopyBoundary(dm, gdm);CHKERRQ(ierr); 963b0441da4SMatthew G. Knepley ierr = DMCopyDisc(dm, gdm);CHKERRQ(ierr); 964cad26855SMatthew G. Knepley gdm->setfromoptionscalled = dm->setfromoptionscalled; 965d80ece95SMatthew G. Knepley if (numGhostCells) *numGhostCells = Ng; 966cd0c2139SMatthew G Knepley *dmGhosted = gdm; 967cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 968cd0c2139SMatthew G Knepley } 969cd0c2139SMatthew G Knepley 970607ab7a9SMatthew G. Knepley /* 971faedd622SMatthew G. Knepley We are adding three kinds of points here: 972607ab7a9SMatthew G. Knepley Replicated: Copies of points which exist in the mesh, such as vertices identified across a fault 973faedd622SMatthew G. Knepley Non-replicated: Points which exist on the fault, but are not replicated 974607ab7a9SMatthew G. Knepley Hybrid: Entirely new points, such as cohesive cells 975a6ae58d1SMatthew G. Knepley 976a6ae58d1SMatthew G. Knepley When creating subsequent cohesive cells, we shift the old hybrid cells to the end of the numbering at 977a6ae58d1SMatthew G. Knepley each depth so that the new split/hybrid points can be inserted as a block. 978607ab7a9SMatthew G. Knepley */ 9797db7e0a7SMatthew G. Knepley static PetscErrorCode DMPlexConstructCohesiveCells_Internal(DM dm, DMLabel label, DMLabel splitLabel, DM sdm) 980cd0c2139SMatthew G Knepley { 981cd0c2139SMatthew G Knepley MPI_Comm comm; 982607ab7a9SMatthew G. Knepley IS valueIS; 983607ab7a9SMatthew G. Knepley PetscInt numSP = 0; /* The number of depths for which we have replicated points */ 984607ab7a9SMatthew G. Knepley const PetscInt *values; /* List of depths for which we have replicated points */ 98518c5995bSMatthew G. Knepley IS *splitIS; 98618c5995bSMatthew G. Knepley IS *unsplitIS; 987607ab7a9SMatthew G. Knepley PetscInt *numSplitPoints; /* The number of replicated points at each depth */ 98818c5995bSMatthew G. Knepley PetscInt *numUnsplitPoints; /* The number of non-replicated points at each depth which still give rise to hybrid points */ 98936dbac82SMatthew G. Knepley PetscInt *numHybridPoints; /* The number of new hybrid points at each depth */ 99036dbac82SMatthew G. Knepley PetscInt *numHybridPointsOld; /* The number of existing hybrid points at each depth */ 991607ab7a9SMatthew G. Knepley const PetscInt **splitPoints; /* Replicated points for each depth */ 99218c5995bSMatthew G. Knepley const PetscInt **unsplitPoints; /* Non-replicated points for each depth */ 993cd0c2139SMatthew G Knepley PetscSection coordSection; 994cd0c2139SMatthew G Knepley Vec coordinates; 995cd0c2139SMatthew G Knepley PetscScalar *coords; 996a6ae58d1SMatthew G. Knepley PetscInt *depthMax; /* The first hybrid point at each depth in the original mesh */ 997a6ae58d1SMatthew G. Knepley PetscInt *depthEnd; /* The point limit at each depth in the original mesh */ 998607ab7a9SMatthew G. Knepley PetscInt *depthShift; /* Number of replicated+hybrid points at each depth */ 999607ab7a9SMatthew G. Knepley PetscInt *pMaxNew; /* The first replicated point at each depth in the new mesh, hybrids come after this */ 1000607ab7a9SMatthew G. Knepley PetscInt *coneNew, *coneONew, *supportNew; 100118c5995bSMatthew G. Knepley PetscInt shift = 100, shift2 = 200, depth = 0, dep, dim, d, sp, maxConeSize, maxSupportSize, maxConeSizeNew, maxSupportSizeNew, numLabels, vStart, vEnd, pEnd, p, v; 1002cd0c2139SMatthew G Knepley PetscErrorCode ierr; 1003cd0c2139SMatthew G Knepley 1004cd0c2139SMatthew G Knepley PetscFunctionBegin; 1005cd0c2139SMatthew G Knepley ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 1006c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1007607ab7a9SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1008fd4b9f15SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1009412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 1010412e9a14SMatthew G. Knepley ierr = DMCreateLabel(sdm, "celltype");CHKERRQ(ierr); 1011cd0c2139SMatthew G Knepley /* Count split points and add cohesive cells */ 1012607ab7a9SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, &maxSupportSize);CHKERRQ(ierr); 10132582d50cSToby Isaac ierr = PetscMalloc5(depth+1,&depthMax,depth+1,&depthEnd,2*(depth+1),&depthShift,depth+1,&pMaxNew,depth+1,&numHybridPointsOld);CHKERRQ(ierr); 1014dcca6d9dSJed Brown ierr = PetscMalloc7(depth+1,&splitIS,depth+1,&unsplitIS,depth+1,&numSplitPoints,depth+1,&numUnsplitPoints,depth+1,&numHybridPoints,depth+1,&splitPoints,depth+1,&unsplitPoints);CHKERRQ(ierr); 1015607ab7a9SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 1016607ab7a9SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, d, NULL, &pMaxNew[d]);CHKERRQ(ierr); 1017412e9a14SMatthew G. Knepley ierr = DMPlexGetTensorPrismBounds_Internal(dm, d, &depthMax[d], NULL);CHKERRQ(ierr); 1018a6ae58d1SMatthew G. Knepley depthEnd[d] = pMaxNew[d]; 1019a6ae58d1SMatthew G. Knepley depthMax[d] = depthMax[d] < 0 ? depthEnd[d] : depthMax[d]; 1020607ab7a9SMatthew G. Knepley numSplitPoints[d] = 0; 102118c5995bSMatthew G. Knepley numUnsplitPoints[d] = 0; 1022607ab7a9SMatthew G. Knepley numHybridPoints[d] = 0; 1023a6ae58d1SMatthew G. Knepley numHybridPointsOld[d] = depthMax[d] < 0 ? 0 : depthEnd[d] - depthMax[d]; 1024607ab7a9SMatthew G. Knepley splitPoints[d] = NULL; 102518c5995bSMatthew G. Knepley unsplitPoints[d] = NULL; 102618c5995bSMatthew G. Knepley splitIS[d] = NULL; 102718c5995bSMatthew G. Knepley unsplitIS[d] = NULL; 102859eef20bSToby Isaac /* we are shifting the existing hybrid points with the stratum behind them, so 102959eef20bSToby Isaac * the split comes at the end of the normal points, i.e., at depthMax[d] */ 103059eef20bSToby Isaac depthShift[2*d] = depthMax[d]; 103159eef20bSToby Isaac depthShift[2*d+1] = 0; 1032607ab7a9SMatthew G. Knepley } 1033cd0c2139SMatthew G Knepley if (label) { 1034cd0c2139SMatthew G Knepley ierr = DMLabelGetValueIS(label, &valueIS);CHKERRQ(ierr); 1035cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(valueIS, &numSP);CHKERRQ(ierr); 1036cd0c2139SMatthew G Knepley ierr = ISGetIndices(valueIS, &values);CHKERRQ(ierr); 1037cd0c2139SMatthew G Knepley } 1038cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1039cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1040cd0c2139SMatthew G Knepley 1041cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 104218c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, dep, &splitIS[dep]);CHKERRQ(ierr); 104318c5995bSMatthew G. Knepley if (splitIS[dep]) { 104418c5995bSMatthew G. Knepley ierr = ISGetLocalSize(splitIS[dep], &numSplitPoints[dep]);CHKERRQ(ierr); 104518c5995bSMatthew G. Knepley ierr = ISGetIndices(splitIS[dep], &splitPoints[dep]);CHKERRQ(ierr); 104618c5995bSMatthew G. Knepley } 104718c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, shift2+dep, &unsplitIS[dep]);CHKERRQ(ierr); 104818c5995bSMatthew G. Knepley if (unsplitIS[dep]) { 104918c5995bSMatthew G. Knepley ierr = ISGetLocalSize(unsplitIS[dep], &numUnsplitPoints[dep]);CHKERRQ(ierr); 105018c5995bSMatthew G. Knepley ierr = ISGetIndices(unsplitIS[dep], &unsplitPoints[dep]);CHKERRQ(ierr); 1051cd0c2139SMatthew G Knepley } 1052cd0c2139SMatthew G Knepley } 1053607ab7a9SMatthew G. Knepley /* Calculate number of hybrid points */ 105418c5995bSMatthew G. Knepley for (d = 1; d <= depth; ++d) numHybridPoints[d] = numSplitPoints[d-1] + numUnsplitPoints[d-1]; /* There is a hybrid cell/face/edge for every split face/edge/vertex */ 10552582d50cSToby Isaac for (d = 0; d <= depth; ++d) depthShift[2*d+1] = numSplitPoints[d] + numHybridPoints[d]; 10563d3eaba7SBarry Smith ierr = DMPlexShiftPointSetUp_Internal(depth,depthShift);CHKERRQ(ierr); 105759eef20bSToby Isaac /* the end of the points in this stratum that come before the new points: 105859eef20bSToby Isaac * shifting pMaxNew[d] gets the new start of the next stratum, then count back the old hybrid points and the newly 105959eef20bSToby Isaac * added points */ 10602582d50cSToby Isaac for (d = 0; d <= depth; ++d) pMaxNew[d] = DMPlexShiftPoint_Internal(pMaxNew[d],depth,depthShift) - (numHybridPointsOld[d] + numSplitPoints[d] + numHybridPoints[d]); 1061cd0c2139SMatthew G Knepley ierr = DMPlexShiftSizes_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1062cd0c2139SMatthew G Knepley /* Step 3: Set cone/support sizes for new points */ 1063cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1064cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1065cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 10662582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 10674c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1068cd0c2139SMatthew G Knepley const PetscInt *support; 10694c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, qf, qn, qp, e; 1070cd0c2139SMatthew G Knepley 1071cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 1072cd0c2139SMatthew G Knepley ierr = DMPlexSetConeSize(sdm, splitp, coneSize);CHKERRQ(ierr); 1073cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 1074cd0c2139SMatthew G Knepley ierr = DMPlexSetSupportSize(sdm, splitp, supportSize);CHKERRQ(ierr); 1075cd0c2139SMatthew G Knepley if (dep == depth-1) { 10764c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 10774c367dbcSMatthew G. Knepley 1078cd0c2139SMatthew G Knepley /* Add cohesive cells, they are prisms */ 10794c367dbcSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybcell, 2 + coneSize);CHKERRQ(ierr); 1080412e9a14SMatthew G. Knepley switch (coneSize) { 1081412e9a14SMatthew G. Knepley case 2: ierr = DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_SEG_PRISM_TENSOR);CHKERRQ(ierr);break; 1082412e9a14SMatthew G. Knepley case 3: ierr = DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_TRI_PRISM_TENSOR);CHKERRQ(ierr);break; 1083412e9a14SMatthew G. Knepley case 4: ierr = DMPlexSetCellType(sdm, hybcell, DM_POLYTOPE_QUAD_PRISM_TENSOR);CHKERRQ(ierr);break; 1084412e9a14SMatthew G. Knepley } 1085cd0c2139SMatthew G Knepley } else if (dep == 0) { 10864c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1087cd0c2139SMatthew G Knepley 1088cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 10894c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1090cd0c2139SMatthew G Knepley PetscInt val; 1091cd0c2139SMatthew G Knepley 1092cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 10934c367dbcSMatthew G. Knepley if (val == 1) ++qf; 10944c367dbcSMatthew G. Knepley if ((val == 1) || (val == (shift + 1))) ++qn; 10954c367dbcSMatthew G. Knepley if ((val == 1) || (val == -(shift + 1))) ++qp; 1096cd0c2139SMatthew G Knepley } 10974c367dbcSMatthew G. Knepley /* Split old vertex: Edges into original vertex and new cohesive edge */ 10984c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qn+1);CHKERRQ(ierr); 10994c367dbcSMatthew G. Knepley /* Split new vertex: Edges into split vertex and new cohesive edge */ 11004c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, splitp, qp+1);CHKERRQ(ierr); 11014c367dbcSMatthew G. Knepley /* Add hybrid edge */ 11024c367dbcSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybedge, 2);CHKERRQ(ierr); 11034c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybedge, qf);CHKERRQ(ierr); 1104412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR);CHKERRQ(ierr); 1105cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 11064c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 11074c367dbcSMatthew G. Knepley 1108cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 11094c367dbcSMatthew G. Knepley for (e = 0, qn = 0, qp = 0, qf = 0; e < supportSize; ++e) { 1110cd0c2139SMatthew G Knepley PetscInt val; 1111cd0c2139SMatthew G Knepley 1112cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 11134c367dbcSMatthew G. Knepley if (val == dim-1) ++qf; 11144c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == (shift + dim-1))) ++qn; 11154c367dbcSMatthew G. Knepley if ((val == dim-1) || (val == -(shift + dim-1))) ++qp; 1116cd0c2139SMatthew G Knepley } 11174c367dbcSMatthew G. Knepley /* Split old edge: Faces into original edge and cohesive face (positive side?) */ 11184c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qn+1);CHKERRQ(ierr); 11194c367dbcSMatthew G. Knepley /* Split new edge: Faces into split edge and cohesive face (negative side?) */ 11204c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, splitp, qp+1);CHKERRQ(ierr); 11214c367dbcSMatthew G. Knepley /* Add hybrid face */ 11224c367dbcSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybface, 4);CHKERRQ(ierr); 11234c367dbcSMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybface, qf);CHKERRQ(ierr); 1124412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR);CHKERRQ(ierr); 1125cd0c2139SMatthew G Knepley } 1126cd0c2139SMatthew G Knepley } 1127cd0c2139SMatthew G Knepley } 112818c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 112918c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 113018c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 11312582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 113218c5995bSMatthew G. Knepley const PetscInt *support; 1133da1dd7e4SMatthew G. Knepley PetscInt coneSize, supportSize, qf, e, s; 113418c5995bSMatthew G. Knepley 113518c5995bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 113618c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 113739254ff6SMatthew G. Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 113818c5995bSMatthew G. Knepley if (dep == 0) { 113918c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 114018c5995bSMatthew G. Knepley 114139254ff6SMatthew G. Knepley /* Unsplit vertex: Edges into original vertex, split edges, and new cohesive edge twice */ 114239254ff6SMatthew G. Knepley for (s = 0, qf = 0; s < supportSize; ++s, ++qf) { 114339254ff6SMatthew G. Knepley ierr = PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e);CHKERRQ(ierr); 114439254ff6SMatthew G. Knepley if (e >= 0) ++qf; 114539254ff6SMatthew G. Knepley } 114639254ff6SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qf+2);CHKERRQ(ierr); 114718c5995bSMatthew G. Knepley /* Add hybrid edge */ 114818c5995bSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybedge, 2);CHKERRQ(ierr); 1149e1757548SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1150e1757548SMatthew G. Knepley PetscInt val; 1151e1757548SMatthew G. Knepley 1152e1757548SMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1153e1757548SMatthew G. Knepley /* Split and unsplit edges produce hybrid faces */ 1154da1dd7e4SMatthew G. Knepley if (val == 1) ++qf; 1155da1dd7e4SMatthew G. Knepley if (val == (shift2 + 1)) ++qf; 1156e1757548SMatthew G. Knepley } 1157e1757548SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybedge, qf);CHKERRQ(ierr); 1158412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(sdm, hybedge, DM_POLYTOPE_POINT_PRISM_TENSOR);CHKERRQ(ierr); 115918c5995bSMatthew G. Knepley } else if (dep == dim-2) { 116018c5995bSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1161cd0c2139SMatthew G Knepley PetscInt val; 1162cd0c2139SMatthew G Knepley 1163da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1164cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1165da1dd7e4SMatthew G. Knepley if (val == dim-1) qf += 2; 1166da1dd7e4SMatthew G. Knepley else ++qf; 1167cd0c2139SMatthew G Knepley } 116818c5995bSMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and cohesive face twice */ 1169da1dd7e4SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, newp, qf+2);CHKERRQ(ierr); 117018c5995bSMatthew G. Knepley /* Add hybrid face */ 1171da1dd7e4SMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 1172da1dd7e4SMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1173da1dd7e4SMatthew G. Knepley if (val == dim-1) ++qf; 1174da1dd7e4SMatthew G. Knepley } 117518c5995bSMatthew G. Knepley ierr = DMPlexSetConeSize(sdm, hybface, 4);CHKERRQ(ierr); 1176da1dd7e4SMatthew G. Knepley ierr = DMPlexSetSupportSize(sdm, hybface, qf);CHKERRQ(ierr); 1177412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(sdm, hybface, DM_POLYTOPE_SEG_PRISM_TENSOR);CHKERRQ(ierr); 1178cd0c2139SMatthew G Knepley } 1179cd0c2139SMatthew G Knepley } 1180cd0c2139SMatthew G Knepley } 1181cd0c2139SMatthew G Knepley /* Step 4: Setup split DM */ 1182cd0c2139SMatthew G Knepley ierr = DMSetUp(sdm);CHKERRQ(ierr); 1183cd0c2139SMatthew G Knepley ierr = DMPlexShiftPoints_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1184dcbb62e8SMatthew G. Knepley ierr = DMPlexGetMaxSizes(sdm, &maxConeSizeNew, &maxSupportSizeNew);CHKERRQ(ierr); 1185dcca6d9dSJed Brown ierr = PetscMalloc3(PetscMax(maxConeSize, maxConeSizeNew)*3,&coneNew,PetscMax(maxConeSize, maxConeSizeNew)*3,&coneONew,PetscMax(maxSupportSize, maxSupportSizeNew),&supportNew);CHKERRQ(ierr); 1186cd0c2139SMatthew G Knepley /* Step 6: Set cones and supports for new points */ 1187cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1188cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 1189cd0c2139SMatthew G Knepley const PetscInt oldp = splitPoints[dep][p]; 11902582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 11914c367dbcSMatthew G. Knepley const PetscInt splitp = p + pMaxNew[dep]; 1192cd0c2139SMatthew G Knepley const PetscInt *cone, *support, *ornt; 11934c367dbcSMatthew G. Knepley PetscInt coneSize, supportSize, q, qf, qn, qp, v, e, s; 1194cd0c2139SMatthew G Knepley 1195cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 1196cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, oldp, &cone);CHKERRQ(ierr); 1197cd0c2139SMatthew G Knepley ierr = DMPlexGetConeOrientation(dm, oldp, &ornt);CHKERRQ(ierr); 1198cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 1199cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 1200cd0c2139SMatthew G Knepley if (dep == depth-1) { 120196a07cd0SMatthew G. Knepley PetscBool hasUnsplit = PETSC_FALSE; 12024c367dbcSMatthew G. Knepley const PetscInt hybcell = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1203cd0c2139SMatthew G Knepley const PetscInt *supportF; 1204cd0c2139SMatthew G Knepley 1205cd0c2139SMatthew G Knepley /* Split face: copy in old face to new face to start */ 1206cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(sdm, newp, &supportF);CHKERRQ(ierr); 1207cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, splitp, supportF);CHKERRQ(ierr); 1208cd0c2139SMatthew G Knepley /* Split old face: old vertices/edges in cone so no change */ 1209cd0c2139SMatthew G Knepley /* Split new face: new vertices/edges in cone */ 1210cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 12114c367dbcSMatthew G. Knepley ierr = PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v);CHKERRQ(ierr); 121218c5995bSMatthew G. Knepley if (v < 0) { 121318c5995bSMatthew G. Knepley ierr = PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 121418c5995bSMatthew G. Knepley if (v < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 12152582d50cSToby Isaac coneNew[2+q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 121696a07cd0SMatthew G. Knepley hasUnsplit = PETSC_TRUE; 121718c5995bSMatthew G. Knepley } else { 12184c367dbcSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep-1]; 1219163235baSMatthew G. Knepley if (dep > 1) { 1220163235baSMatthew G. Knepley const PetscInt *econe; 1221163235baSMatthew G. Knepley PetscInt econeSize, r, vs, vu; 1222163235baSMatthew G. Knepley 1223163235baSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cone[q], &econeSize);CHKERRQ(ierr); 1224163235baSMatthew G. Knepley ierr = DMPlexGetCone(dm, cone[q], &econe);CHKERRQ(ierr); 1225163235baSMatthew G. Knepley for (r = 0; r < econeSize; ++r) { 1226163235baSMatthew G. Knepley ierr = PetscFindInt(econe[r], numSplitPoints[dep-2], splitPoints[dep-2], &vs);CHKERRQ(ierr); 1227163235baSMatthew G. Knepley ierr = PetscFindInt(econe[r], numUnsplitPoints[dep-2], unsplitPoints[dep-2], &vu);CHKERRQ(ierr); 1228163235baSMatthew G. Knepley if (vs >= 0) continue; 1229163235baSMatthew G. Knepley if (vu < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", econe[r], dep-2); 1230163235baSMatthew G. Knepley hasUnsplit = PETSC_TRUE; 1231163235baSMatthew G. Knepley } 1232163235baSMatthew G. Knepley } 1233cd0c2139SMatthew G Knepley } 1234cd0c2139SMatthew G Knepley } 1235cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(sdm, splitp, &coneNew[2]);CHKERRQ(ierr); 1236cd0c2139SMatthew G Knepley ierr = DMPlexSetConeOrientation(sdm, splitp, ornt);CHKERRQ(ierr); 1237e537020bSMatthew G. Knepley /* Face support */ 1238cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 1239cd0c2139SMatthew G Knepley PetscInt val; 1240cd0c2139SMatthew G Knepley 1241cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[s], &val);CHKERRQ(ierr); 1242cd0c2139SMatthew G Knepley if (val < 0) { 1243cd0c2139SMatthew G Knepley /* Split old face: Replace negative side cell with cohesive cell */ 12444c367dbcSMatthew G. Knepley ierr = DMPlexInsertSupport(sdm, newp, s, hybcell);CHKERRQ(ierr); 1245cd0c2139SMatthew G Knepley } else { 1246cd0c2139SMatthew G Knepley /* Split new face: Replace positive side cell with cohesive cell */ 12474c367dbcSMatthew G. Knepley ierr = DMPlexInsertSupport(sdm, splitp, s, hybcell);CHKERRQ(ierr); 1248e537020bSMatthew G. Knepley /* Get orientation for cohesive face */ 1249e537020bSMatthew G. Knepley { 1250e537020bSMatthew G. Knepley const PetscInt *ncone, *nconeO; 1251e537020bSMatthew G. Knepley PetscInt nconeSize, nc; 1252e537020bSMatthew G. Knepley 1253e537020bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[s], &nconeSize);CHKERRQ(ierr); 1254e537020bSMatthew G. Knepley ierr = DMPlexGetCone(dm, support[s], &ncone);CHKERRQ(ierr); 1255e537020bSMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, support[s], &nconeO);CHKERRQ(ierr); 1256e537020bSMatthew G. Knepley for (nc = 0; nc < nconeSize; ++nc) { 1257e537020bSMatthew G. Knepley if (ncone[nc] == oldp) { 1258e537020bSMatthew G. Knepley coneONew[0] = nconeO[nc]; 1259e537020bSMatthew G. Knepley break; 1260cd0c2139SMatthew G Knepley } 1261cd0c2139SMatthew G Knepley } 1262e537020bSMatthew G. Knepley if (nc >= nconeSize) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate face %d in neighboring cell %d", oldp, support[s]); 1263e537020bSMatthew G. Knepley } 1264e537020bSMatthew G. Knepley } 1265e537020bSMatthew G. Knepley } 12664c367dbcSMatthew G. Knepley /* Cohesive cell: Old and new split face, then new cohesive faces */ 1267fd4b9f15SMatthew G. Knepley coneNew[0] = newp; /* Extracted negative side orientation above */ 12684c367dbcSMatthew G. Knepley coneNew[1] = splitp; 12694c367dbcSMatthew G. Knepley coneONew[1] = coneONew[0]; 1270e537020bSMatthew G. Knepley for (q = 0; q < coneSize; ++q) { 1271412e9a14SMatthew G. Knepley /* Hybrid faces must follow order from oriented end face */ 1272412e9a14SMatthew G. Knepley const PetscInt o = coneONew[0]; 1273412e9a14SMatthew G. Knepley const PetscInt qo = o < 0 ? (-(o+1)+coneSize-q)%coneSize : (q+o)%coneSize; 1274412e9a14SMatthew G. Knepley 1275412e9a14SMatthew G. Knepley ierr = PetscFindInt(cone[qo], numSplitPoints[dep-1], splitPoints[dep-1], &v);CHKERRQ(ierr); 127618c5995bSMatthew G. Knepley if (v < 0) { 1277412e9a14SMatthew G. Knepley ierr = PetscFindInt(cone[qo], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 127818c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 127918c5995bSMatthew G. Knepley } else { 128018c5995bSMatthew G. Knepley coneNew[2+q] = v + pMaxNew[dep] + numSplitPoints[dep]; 128118c5995bSMatthew G. Knepley } 1282412e9a14SMatthew G. Knepley coneONew[2+q] = ((o < 0) + (ornt[qo] < 0))%2 ? -1 : 0; 1283e537020bSMatthew G. Knepley } 12844c367dbcSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybcell, coneNew);CHKERRQ(ierr); 12854c367dbcSMatthew G. Knepley ierr = DMPlexSetConeOrientation(sdm, hybcell, coneONew);CHKERRQ(ierr); 128696a07cd0SMatthew G. Knepley /* Label the hybrid cells on the boundary of the split */ 128796a07cd0SMatthew G. Knepley if (hasUnsplit) {ierr = DMLabelSetValue(label, -hybcell, dim);CHKERRQ(ierr);} 1288cd0c2139SMatthew G Knepley } else if (dep == 0) { 12894c367dbcSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1290cd0c2139SMatthew G Knepley 1291cd0c2139SMatthew G Knepley /* Split old vertex: Edges in old split faces and new cohesive edge */ 12924c367dbcSMatthew G. Knepley for (e = 0, qn = 0; e < supportSize; ++e) { 1293cd0c2139SMatthew G Knepley PetscInt val; 1294cd0c2139SMatthew G Knepley 1295cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1296cd0c2139SMatthew G Knepley if ((val == 1) || (val == (shift + 1))) { 12972582d50cSToby Isaac supportNew[qn++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1298cd0c2139SMatthew G Knepley } 1299cd0c2139SMatthew G Knepley } 13004c367dbcSMatthew G. Knepley supportNew[qn] = hybedge; 1301cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 1302cd0c2139SMatthew G Knepley /* Split new vertex: Edges in new split faces and new cohesive edge */ 13034c367dbcSMatthew G. Knepley for (e = 0, qp = 0; e < supportSize; ++e) { 1304cd0c2139SMatthew G Knepley PetscInt val, edge; 1305cd0c2139SMatthew G Knepley 1306cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1307cd0c2139SMatthew G Knepley if (val == 1) { 13084c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge);CHKERRQ(ierr); 1309cd0c2139SMatthew G Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 13104c367dbcSMatthew G. Knepley supportNew[qp++] = edge + pMaxNew[dep+1]; 1311cd0c2139SMatthew G Knepley } else if (val == -(shift + 1)) { 13122582d50cSToby Isaac supportNew[qp++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1313cd0c2139SMatthew G Knepley } 1314cd0c2139SMatthew G Knepley } 13154c367dbcSMatthew G. Knepley supportNew[qp] = hybedge; 1316cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, splitp, supportNew);CHKERRQ(ierr); 13174c367dbcSMatthew G. Knepley /* Hybrid edge: Old and new split vertex */ 1318cd0c2139SMatthew G Knepley coneNew[0] = newp; 1319cd0c2139SMatthew G Knepley coneNew[1] = splitp; 13204c367dbcSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybedge, coneNew);CHKERRQ(ierr); 13214c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13224c367dbcSMatthew G. Knepley PetscInt val, edge; 13234c367dbcSMatthew G. Knepley 13244c367dbcSMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 13254c367dbcSMatthew G. Knepley if (val == 1) { 13264c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge);CHKERRQ(ierr); 13274c367dbcSMatthew G. Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 13284c367dbcSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 13294c367dbcSMatthew G. Knepley } 13304c367dbcSMatthew G. Knepley } 13314c367dbcSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybedge, supportNew);CHKERRQ(ierr); 1332cd0c2139SMatthew G Knepley } else if (dep == dim-2) { 13334c367dbcSMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 13344c367dbcSMatthew G. Knepley 1335cd0c2139SMatthew G Knepley /* Split old edge: old vertices in cone so no change */ 1336cd0c2139SMatthew G Knepley /* Split new edge: new vertices in cone */ 1337cd0c2139SMatthew G Knepley for (q = 0; q < coneSize; ++q) { 13384c367dbcSMatthew G. Knepley ierr = PetscFindInt(cone[q], numSplitPoints[dep-1], splitPoints[dep-1], &v);CHKERRQ(ierr); 1339e1757548SMatthew G. Knepley if (v < 0) { 1340e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[q], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 1341e1757548SMatthew G. Knepley if (v < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[q], dep-1); 13422582d50cSToby Isaac coneNew[q] = DMPlexShiftPoint_Internal(cone[q], depth, depthShift) /*cone[q] + depthOffset[dep-1]*/; 1343e1757548SMatthew G. Knepley } else { 13444c367dbcSMatthew G. Knepley coneNew[q] = v + pMaxNew[dep-1]; 1345cd0c2139SMatthew G Knepley } 1346e1757548SMatthew G. Knepley } 1347cd0c2139SMatthew G Knepley ierr = DMPlexSetCone(sdm, splitp, coneNew);CHKERRQ(ierr); 1348cd0c2139SMatthew G Knepley /* Split old edge: Faces in positive side cells and old split faces */ 1349cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1350cd0c2139SMatthew G Knepley PetscInt val; 1351cd0c2139SMatthew G Knepley 1352cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 13534c367dbcSMatthew G. Knepley if (val == dim-1) { 13542582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 13554c367dbcSMatthew G. Knepley } else if (val == (shift + dim-1)) { 13562582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1357cd0c2139SMatthew G Knepley } 1358cd0c2139SMatthew G Knepley } 1359b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1360cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 1361cd0c2139SMatthew G Knepley /* Split new edge: Faces in negative side cells and new split faces */ 1362cd0c2139SMatthew G Knepley for (e = 0, q = 0; e < supportSize; ++e) { 1363cd0c2139SMatthew G Knepley PetscInt val, face; 1364cd0c2139SMatthew G Knepley 1365cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 1366cd0c2139SMatthew G Knepley if (val == dim-1) { 13674c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 1368cd0c2139SMatthew G Knepley if (face < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 13694c367dbcSMatthew G. Knepley supportNew[q++] = face + pMaxNew[dep+1]; 1370cd0c2139SMatthew G Knepley } else if (val == -(shift + dim-1)) { 13712582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[e], depth, depthShift) /*support[e] + depthOffset[dep+1]*/; 1372cd0c2139SMatthew G Knepley } 1373cd0c2139SMatthew G Knepley } 1374b279cd2aSMatthew G. Knepley supportNew[q++] = p + pMaxNew[dep+1] + numSplitPoints[dep+1]; 1375cd0c2139SMatthew G Knepley ierr = DMPlexSetSupport(sdm, splitp, supportNew);CHKERRQ(ierr); 13764c367dbcSMatthew G. Knepley /* Hybrid face */ 13774c367dbcSMatthew G. Knepley coneNew[0] = newp; 13784c367dbcSMatthew G. Knepley coneNew[1] = splitp; 13794c367dbcSMatthew G. Knepley for (v = 0; v < coneSize; ++v) { 13804c367dbcSMatthew G. Knepley PetscInt vertex; 13814c367dbcSMatthew G. Knepley ierr = PetscFindInt(cone[v], numSplitPoints[dep-1], splitPoints[dep-1], &vertex);CHKERRQ(ierr); 1382e1757548SMatthew G. Knepley if (vertex < 0) { 1383e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[v], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &vertex);CHKERRQ(ierr); 1384e1757548SMatthew G. Knepley if (vertex < 0) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not locate point %d in split or unsplit points of depth %d", cone[v], dep-1); 1385e1757548SMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1386e1757548SMatthew G. Knepley } else { 13874c367dbcSMatthew G. Knepley coneNew[2+v] = vertex + pMaxNew[dep] + numSplitPoints[dep]; 13884c367dbcSMatthew G. Knepley } 1389e1757548SMatthew G. Knepley } 13904c367dbcSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybface, coneNew);CHKERRQ(ierr); 13914c367dbcSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 13924c367dbcSMatthew G. Knepley PetscInt val, face; 13934c367dbcSMatthew G. Knepley 13944c367dbcSMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 13954c367dbcSMatthew G. Knepley if (val == dim-1) { 13964c367dbcSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 13974c367dbcSMatthew G. Knepley if (face < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[e]); 13984c367dbcSMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 13994c367dbcSMatthew G. Knepley } 14004c367dbcSMatthew G. Knepley } 14014c367dbcSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybface, supportNew);CHKERRQ(ierr); 1402cd0c2139SMatthew G Knepley } 1403cd0c2139SMatthew G Knepley } 1404cd0c2139SMatthew G Knepley } 140518c5995bSMatthew G. Knepley for (dep = 0; dep <= depth; ++dep) { 140618c5995bSMatthew G. Knepley for (p = 0; p < numUnsplitPoints[dep]; ++p) { 140718c5995bSMatthew G. Knepley const PetscInt oldp = unsplitPoints[dep][p]; 14082582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*oldp + depthOffset[dep]*/; 140918c5995bSMatthew G. Knepley const PetscInt *cone, *support, *ornt; 1410e1757548SMatthew G. Knepley PetscInt coneSize, supportSize, supportSizeNew, q, qf, e, f, s; 141118c5995bSMatthew G. Knepley 141218c5995bSMatthew G. Knepley ierr = DMPlexGetConeSize(dm, oldp, &coneSize);CHKERRQ(ierr); 141318c5995bSMatthew G. Knepley ierr = DMPlexGetCone(dm, oldp, &cone);CHKERRQ(ierr); 141418c5995bSMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, oldp, &ornt);CHKERRQ(ierr); 141518c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, oldp, &supportSize);CHKERRQ(ierr); 141618c5995bSMatthew G. Knepley ierr = DMPlexGetSupport(dm, oldp, &support);CHKERRQ(ierr); 141718c5995bSMatthew G. Knepley if (dep == 0) { 141818c5995bSMatthew G. Knepley const PetscInt hybedge = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 141918c5995bSMatthew G. Knepley 142018c5995bSMatthew G. Knepley /* Unsplit vertex */ 142118c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(sdm, newp, &supportSizeNew);CHKERRQ(ierr); 142218c5995bSMatthew G. Knepley for (s = 0, q = 0; s < supportSize; ++s) { 14232582d50cSToby Isaac supportNew[q++] = DMPlexShiftPoint_Internal(support[s], depth, depthShift) /*support[s] + depthOffset[dep+1]*/; 142418c5995bSMatthew G. Knepley ierr = PetscFindInt(support[s], numSplitPoints[dep+1], splitPoints[dep+1], &e);CHKERRQ(ierr); 142518c5995bSMatthew G. Knepley if (e >= 0) { 142618c5995bSMatthew G. Knepley supportNew[q++] = e + pMaxNew[dep+1]; 142718c5995bSMatthew G. Knepley } 142818c5995bSMatthew G. Knepley } 142918c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 143018c5995bSMatthew G. Knepley supportNew[q++] = hybedge; 143118c5995bSMatthew G. Knepley if (q != supportSizeNew) SETERRQ3(comm, PETSC_ERR_ARG_WRONG, "Support size %d != %d for vertex %d", q, supportSizeNew, newp); 143218c5995bSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 143318c5995bSMatthew G. Knepley /* Hybrid edge */ 143418c5995bSMatthew G. Knepley coneNew[0] = newp; 143518c5995bSMatthew G. Knepley coneNew[1] = newp; 143618c5995bSMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybedge, coneNew);CHKERRQ(ierr); 143718c5995bSMatthew G. Knepley for (e = 0, qf = 0; e < supportSize; ++e) { 143818c5995bSMatthew G. Knepley PetscInt val, edge; 143918c5995bSMatthew G. Knepley 144018c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, support[e], &val);CHKERRQ(ierr); 144118c5995bSMatthew G. Knepley if (val == 1) { 144218c5995bSMatthew G. Knepley ierr = PetscFindInt(support[e], numSplitPoints[dep+1], splitPoints[dep+1], &edge);CHKERRQ(ierr); 144318c5995bSMatthew G. Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a split edge", support[e]); 144418c5995bSMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1445e1757548SMatthew G. Knepley } else if (val == (shift2 + 1)) { 1446e1757548SMatthew G. Knepley ierr = PetscFindInt(support[e], numUnsplitPoints[dep+1], unsplitPoints[dep+1], &edge);CHKERRQ(ierr); 1447e1757548SMatthew G. Knepley if (edge < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Edge %d is not a unsplit edge", support[e]); 1448e1757548SMatthew G. Knepley supportNew[qf++] = edge + pMaxNew[dep+2] + numSplitPoints[dep+2] + numSplitPoints[dep+1]; 144918c5995bSMatthew G. Knepley } 145018c5995bSMatthew G. Knepley } 145118c5995bSMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybedge, supportNew);CHKERRQ(ierr); 1452e1757548SMatthew G. Knepley } else if (dep == dim-2) { 1453e1757548SMatthew G. Knepley const PetscInt hybface = p + pMaxNew[dep+1] + numSplitPoints[dep+1] + numSplitPoints[dep]; 1454e1757548SMatthew G. Knepley 1455da1dd7e4SMatthew G. Knepley /* Unsplit edge: Faces into original edge, split face, and hybrid face twice */ 1456e1757548SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1457e1757548SMatthew G. Knepley PetscInt val, face; 1458e1757548SMatthew G. Knepley 1459e1757548SMatthew G. Knepley ierr = DMLabelGetValue(label, support[f], &val);CHKERRQ(ierr); 1460e1757548SMatthew G. Knepley if (val == dim-1) { 1461e1757548SMatthew G. Knepley ierr = PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 1462e1757548SMatthew G. Knepley if (face < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Face %d is not a split face", support[f]); 14632582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1464e1757548SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+1]; 1465e1757548SMatthew G. Knepley } else { 14662582d50cSToby Isaac supportNew[qf++] = DMPlexShiftPoint_Internal(support[f], depth, depthShift) /*support[f] + depthOffset[dep+1]*/; 1467e1757548SMatthew G. Knepley } 1468e1757548SMatthew G. Knepley } 1469e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1470e1757548SMatthew G. Knepley supportNew[qf++] = hybface; 1471da1dd7e4SMatthew G. Knepley ierr = DMPlexGetSupportSize(sdm, newp, &supportSizeNew);CHKERRQ(ierr); 1472da1dd7e4SMatthew G. Knepley if (qf != supportSizeNew) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for unsplit edge %d is %d != %d\n", newp, qf, supportSizeNew); 1473e1757548SMatthew G. Knepley ierr = DMPlexSetSupport(sdm, newp, supportNew);CHKERRQ(ierr); 1474e1757548SMatthew G. Knepley /* Add hybrid face */ 1475e1757548SMatthew G. Knepley coneNew[0] = newp; 1476212cc919SMatthew G. Knepley coneNew[1] = newp; 1477e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[0], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 1478e1757548SMatthew G. Knepley if (v < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[0]); 1479212cc919SMatthew G. Knepley coneNew[2] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1480e1757548SMatthew G. Knepley ierr = PetscFindInt(cone[1], numUnsplitPoints[dep-1], unsplitPoints[dep-1], &v);CHKERRQ(ierr); 1481e1757548SMatthew G. Knepley if (v < 0) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Vertex %d is not an unsplit vertex", cone[1]); 1482e1757548SMatthew G. Knepley coneNew[3] = v + pMaxNew[dep] + numSplitPoints[dep] + numSplitPoints[dep-1]; 1483e1757548SMatthew G. Knepley ierr = DMPlexSetCone(sdm, hybface, coneNew);CHKERRQ(ierr); 1484da1dd7e4SMatthew G. Knepley for (f = 0, qf = 0; f < supportSize; ++f) { 1485da1dd7e4SMatthew G. Knepley PetscInt val, face; 1486da1dd7e4SMatthew G. Knepley 1487da1dd7e4SMatthew G. Knepley ierr = DMLabelGetValue(label, support[f], &val);CHKERRQ(ierr); 1488da1dd7e4SMatthew G. Knepley if (val == dim-1) { 1489da1dd7e4SMatthew G. Knepley ierr = PetscFindInt(support[f], numSplitPoints[dep+1], splitPoints[dep+1], &face);CHKERRQ(ierr); 1490da1dd7e4SMatthew G. Knepley supportNew[qf++] = face + pMaxNew[dep+2] + numSplitPoints[dep+2]; 1491da1dd7e4SMatthew G. Knepley } 1492da1dd7e4SMatthew G. Knepley } 1493da1dd7e4SMatthew G. Knepley ierr = DMPlexGetSupportSize(sdm, hybface, &supportSizeNew);CHKERRQ(ierr); 1494da1dd7e4SMatthew G. Knepley if (qf != supportSizeNew) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Support size for hybrid face %d is %d != %d\n", hybface, qf, supportSizeNew); 1495e1757548SMatthew G. Knepley ierr = DMPlexSetSupport(sdm, hybface, supportNew);CHKERRQ(ierr); 1496cd0c2139SMatthew G Knepley } 1497cd0c2139SMatthew G Knepley } 1498cd0c2139SMatthew G Knepley } 1499cd0c2139SMatthew G Knepley /* Step 6b: Replace split points in negative side cones */ 1500cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1501cd0c2139SMatthew G Knepley PetscInt dep = values[sp]; 1502cd0c2139SMatthew G Knepley IS pIS; 1503cd0c2139SMatthew G Knepley PetscInt numPoints; 1504cd0c2139SMatthew G Knepley const PetscInt *points; 1505cd0c2139SMatthew G Knepley 1506cd0c2139SMatthew G Knepley if (dep >= 0) continue; 1507cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, dep, &pIS);CHKERRQ(ierr); 1508cd0c2139SMatthew G Knepley if (!pIS) continue; 1509cd0c2139SMatthew G Knepley dep = -dep - shift; 1510cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(pIS, &numPoints);CHKERRQ(ierr); 1511cd0c2139SMatthew G Knepley ierr = ISGetIndices(pIS, &points);CHKERRQ(ierr); 1512cd0c2139SMatthew G Knepley for (p = 0; p < numPoints; ++p) { 1513cd0c2139SMatthew G Knepley const PetscInt oldp = points[p]; 15142582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(oldp, depth, depthShift) /*depthOffset[dep] + oldp*/; 1515cd0c2139SMatthew G Knepley const PetscInt *cone; 1516cd0c2139SMatthew G Knepley PetscInt coneSize, c; 151750cf782dSMatthew G. Knepley /* PetscBool replaced = PETSC_FALSE; */ 1518cd0c2139SMatthew G Knepley 1519cd0c2139SMatthew G Knepley /* Negative edge: replace split vertex */ 1520cd0c2139SMatthew G Knepley /* Negative cell: replace split face */ 1521cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(sdm, newp, &coneSize);CHKERRQ(ierr); 1522cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(sdm, newp, &cone);CHKERRQ(ierr); 1523cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1524e38fbfedSToby Isaac const PetscInt coldp = DMPlexShiftPointInverse_Internal(cone[c],depth,depthShift); 1525cd0c2139SMatthew G Knepley PetscInt csplitp, cp, val; 1526cd0c2139SMatthew G Knepley 1527cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, coldp, &val);CHKERRQ(ierr); 1528cd0c2139SMatthew G Knepley if (val == dep-1) { 1529cd0c2139SMatthew G Knepley ierr = PetscFindInt(coldp, numSplitPoints[dep-1], splitPoints[dep-1], &cp);CHKERRQ(ierr); 1530cd0c2139SMatthew G Knepley if (cp < 0) SETERRQ2(comm, PETSC_ERR_ARG_WRONG, "Point %d is not a split point of dimension %d", oldp, dep-1); 1531cd0c2139SMatthew G Knepley csplitp = pMaxNew[dep-1] + cp; 1532cd0c2139SMatthew G Knepley ierr = DMPlexInsertCone(sdm, newp, c, csplitp);CHKERRQ(ierr); 153350cf782dSMatthew G. Knepley /* replaced = PETSC_TRUE; */ 1534cd0c2139SMatthew G Knepley } 1535cd0c2139SMatthew G Knepley } 15364a189a86SMatthew G. Knepley /* Cells with only a vertex or edge on the submesh have no replacement */ 15374a189a86SMatthew G. Knepley /* if (!replaced) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "The cone of point %d does not contain split points", oldp); */ 1538cd0c2139SMatthew G Knepley } 1539cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(pIS, &points);CHKERRQ(ierr); 1540cd0c2139SMatthew G Knepley ierr = ISDestroy(&pIS);CHKERRQ(ierr); 1541cd0c2139SMatthew G Knepley } 1542fa8e8ae5SToby Isaac /* Step 7: Coordinates */ 1543cd0c2139SMatthew G Knepley ierr = DMPlexShiftCoordinates_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 154469d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(sdm, &coordSection);CHKERRQ(ierr); 1545cd0c2139SMatthew G Knepley ierr = DMGetCoordinatesLocal(sdm, &coordinates);CHKERRQ(ierr); 1546cd0c2139SMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 1547cd0c2139SMatthew G Knepley for (v = 0; v < (numSplitPoints ? numSplitPoints[0] : 0); ++v) { 15482582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[0][v], depth, depthShift) /*depthOffset[0] + splitPoints[0][v]*/; 1549cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[0] + v; 1550cd0c2139SMatthew G Knepley PetscInt dof, off, soff, d; 1551cd0c2139SMatthew G Knepley 1552cd0c2139SMatthew G Knepley ierr = PetscSectionGetDof(coordSection, newp, &dof);CHKERRQ(ierr); 1553cd0c2139SMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, newp, &off);CHKERRQ(ierr); 1554cd0c2139SMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, splitp, &soff);CHKERRQ(ierr); 1555cd0c2139SMatthew G Knepley for (d = 0; d < dof; ++d) coords[soff+d] = coords[off+d]; 1556cd0c2139SMatthew G Knepley } 1557cd0c2139SMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 1558fa8e8ae5SToby Isaac /* Step 8: SF, if I can figure this out we can split the mesh in parallel */ 1559cd0c2139SMatthew G Knepley ierr = DMPlexShiftSF_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1560fa8e8ae5SToby Isaac /* Step 9: Labels */ 1561cd0c2139SMatthew G Knepley ierr = DMPlexShiftLabels_Internal(dm, depthShift, sdm);CHKERRQ(ierr); 1562c58f1c22SToby Isaac ierr = DMGetNumLabels(sdm, &numLabels);CHKERRQ(ierr); 1563cd0c2139SMatthew G Knepley for (dep = 0; dep <= depth; ++dep) { 1564cd0c2139SMatthew G Knepley for (p = 0; p < numSplitPoints[dep]; ++p) { 15652582d50cSToby Isaac const PetscInt newp = DMPlexShiftPoint_Internal(splitPoints[dep][p], depth, depthShift) /*depthOffset[dep] + splitPoints[dep][p]*/; 1566cd0c2139SMatthew G Knepley const PetscInt splitp = pMaxNew[dep] + p; 1567cd0c2139SMatthew G Knepley PetscInt l; 1568cd0c2139SMatthew G Knepley 15697db7e0a7SMatthew G. Knepley if (splitLabel) { 15707db7e0a7SMatthew G. Knepley const PetscInt val = 100 + dep; 15717db7e0a7SMatthew G. Knepley 15727db7e0a7SMatthew G. Knepley ierr = DMLabelSetValue(splitLabel, newp, val);CHKERRQ(ierr); 15737db7e0a7SMatthew G. Knepley ierr = DMLabelSetValue(splitLabel, splitp, -val);CHKERRQ(ierr); 15747db7e0a7SMatthew G. Knepley } 1575cd0c2139SMatthew G Knepley for (l = 0; l < numLabels; ++l) { 1576cd0c2139SMatthew G Knepley DMLabel mlabel; 1577cd0c2139SMatthew G Knepley const char *lname; 1578cd0c2139SMatthew G Knepley PetscInt val; 15799a356370SMatthew G. Knepley PetscBool isDepth; 1580cd0c2139SMatthew G Knepley 1581c58f1c22SToby Isaac ierr = DMGetLabelName(sdm, l, &lname);CHKERRQ(ierr); 15829a356370SMatthew G. Knepley ierr = PetscStrcmp(lname, "depth", &isDepth);CHKERRQ(ierr); 15839a356370SMatthew G. Knepley if (isDepth) continue; 1584c58f1c22SToby Isaac ierr = DMGetLabel(sdm, lname, &mlabel);CHKERRQ(ierr); 1585cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(mlabel, newp, &val);CHKERRQ(ierr); 1586cd0c2139SMatthew G Knepley if (val >= 0) { 1587cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(mlabel, splitp, val);CHKERRQ(ierr); 1588cd0c2139SMatthew G Knepley } 1589cd0c2139SMatthew G Knepley } 1590cd0c2139SMatthew G Knepley } 1591cd0c2139SMatthew G Knepley } 1592cd0c2139SMatthew G Knepley for (sp = 0; sp < numSP; ++sp) { 1593cd0c2139SMatthew G Knepley const PetscInt dep = values[sp]; 1594cd0c2139SMatthew G Knepley 1595cd0c2139SMatthew G Knepley if ((dep < 0) || (dep > depth)) continue; 159618c5995bSMatthew G. Knepley if (splitIS[dep]) {ierr = ISRestoreIndices(splitIS[dep], &splitPoints[dep]);CHKERRQ(ierr);} 159718c5995bSMatthew G. Knepley ierr = ISDestroy(&splitIS[dep]);CHKERRQ(ierr); 159818c5995bSMatthew G. Knepley if (unsplitIS[dep]) {ierr = ISRestoreIndices(unsplitIS[dep], &unsplitPoints[dep]);CHKERRQ(ierr);} 159918c5995bSMatthew G. Knepley ierr = ISDestroy(&unsplitIS[dep]);CHKERRQ(ierr); 1600cd0c2139SMatthew G Knepley } 1601cd0c2139SMatthew G Knepley if (label) { 1602cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(valueIS, &values);CHKERRQ(ierr); 1603cd0c2139SMatthew G Knepley ierr = ISDestroy(&valueIS);CHKERRQ(ierr); 1604cd0c2139SMatthew G Knepley } 16050d4d4d06SMatthew G. Knepley for (d = 0; d <= depth; ++d) { 16060d4d4d06SMatthew G. Knepley ierr = DMPlexGetDepthStratum(sdm, d, NULL, &pEnd);CHKERRQ(ierr); 160736dbac82SMatthew G. Knepley pMaxNew[d] = pEnd - numHybridPoints[d] - numHybridPointsOld[d]; 16080d4d4d06SMatthew G. Knepley } 1609dcbb62e8SMatthew G. Knepley ierr = PetscFree3(coneNew, coneONew, supportNew);CHKERRQ(ierr); 16102582d50cSToby Isaac ierr = PetscFree5(depthMax, depthEnd, depthShift, pMaxNew, numHybridPointsOld);CHKERRQ(ierr); 161118c5995bSMatthew G. Knepley ierr = PetscFree7(splitIS, unsplitIS, numSplitPoints, numUnsplitPoints, numHybridPoints, splitPoints, unsplitPoints);CHKERRQ(ierr); 1612cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1613cd0c2139SMatthew G Knepley } 1614cd0c2139SMatthew G Knepley 1615cd0c2139SMatthew G Knepley /*@C 1616cd0c2139SMatthew G Knepley DMPlexConstructCohesiveCells - Construct cohesive cells which split the face along an internal interface 1617cd0c2139SMatthew G Knepley 1618cd0c2139SMatthew G Knepley Collective on dm 1619cd0c2139SMatthew G Knepley 1620cd0c2139SMatthew G Knepley Input Parameters: 1621cd0c2139SMatthew G Knepley + dm - The original DM 162253156dfcSMatthew G. Knepley - label - The label specifying the boundary faces (this could be auto-generated) 1623cd0c2139SMatthew G Knepley 1624cd0c2139SMatthew G Knepley Output Parameters: 16257db7e0a7SMatthew G. Knepley + splitLabel - The label containing the split points, or NULL if no output is desired 1626cd0c2139SMatthew G Knepley - dmSplit - The new DM 1627cd0c2139SMatthew G Knepley 1628cd0c2139SMatthew G Knepley Level: developer 1629cd0c2139SMatthew G Knepley 16302be2b188SMatthew G Knepley .seealso: DMCreate(), DMPlexLabelCohesiveComplete() 1631cd0c2139SMatthew G Knepley @*/ 16327db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexConstructCohesiveCells(DM dm, DMLabel label, DMLabel splitLabel, DM *dmSplit) 1633cd0c2139SMatthew G Knepley { 1634cd0c2139SMatthew G Knepley DM sdm; 1635cd0c2139SMatthew G Knepley PetscInt dim; 1636cd0c2139SMatthew G Knepley PetscErrorCode ierr; 1637cd0c2139SMatthew G Knepley 1638cd0c2139SMatthew G Knepley PetscFunctionBegin; 1639cd0c2139SMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 164053156dfcSMatthew G. Knepley PetscValidPointer(dmSplit, 3); 1641cd0c2139SMatthew G Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), &sdm);CHKERRQ(ierr); 1642cd0c2139SMatthew G Knepley ierr = DMSetType(sdm, DMPLEX);CHKERRQ(ierr); 1643c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1644c73cfb54SMatthew G. Knepley ierr = DMSetDimension(sdm, dim);CHKERRQ(ierr); 1645cd0c2139SMatthew G Knepley switch (dim) { 1646cd0c2139SMatthew G Knepley case 2: 1647cd0c2139SMatthew G Knepley case 3: 16487db7e0a7SMatthew G. Knepley ierr = DMPlexConstructCohesiveCells_Internal(dm, label, splitLabel, sdm);CHKERRQ(ierr); 1649cd0c2139SMatthew G Knepley break; 1650cd0c2139SMatthew G Knepley default: 1651cd0c2139SMatthew G Knepley SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_OUTOFRANGE, "Cannot construct cohesive cells for dimension %d", dim); 1652cd0c2139SMatthew G Knepley } 1653cd0c2139SMatthew G Knepley *dmSplit = sdm; 1654cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 1655cd0c2139SMatthew G Knepley } 1656cd0c2139SMatthew G Knepley 16570f66a230SMatthew G. Knepley /* Returns the side of the surface for a given cell with a face on the surface */ 16580f66a230SMatthew G. Knepley static PetscErrorCode GetSurfaceSide_Static(DM dm, DM subdm, PetscInt numSubpoints, const PetscInt *subpoints, PetscInt cell, PetscInt face, PetscBool *pos) 16590f66a230SMatthew G. Knepley { 16600f66a230SMatthew G. Knepley const PetscInt *cone, *ornt; 16610f66a230SMatthew G. Knepley PetscInt dim, coneSize, c; 16620f66a230SMatthew G. Knepley PetscErrorCode ierr; 16630f66a230SMatthew G. Knepley 16640f66a230SMatthew G. Knepley PetscFunctionBegin; 16650f66a230SMatthew G. Knepley *pos = PETSC_TRUE; 1666c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 16670f66a230SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cell, &coneSize);CHKERRQ(ierr); 16680f66a230SMatthew G. Knepley ierr = DMPlexGetCone(dm, cell, &cone);CHKERRQ(ierr); 16690f66a230SMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, cell, &ornt);CHKERRQ(ierr); 16700f66a230SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 16710f66a230SMatthew G. Knepley if (cone[c] == face) { 16720f66a230SMatthew G. Knepley PetscInt o = ornt[c]; 16730f66a230SMatthew G. Knepley 16740f66a230SMatthew G. Knepley if (subdm) { 16750f66a230SMatthew G. Knepley const PetscInt *subcone, *subornt; 16760f66a230SMatthew G. Knepley PetscInt subpoint, subface, subconeSize, sc; 16770f66a230SMatthew G. Knepley 16780f66a230SMatthew G. Knepley ierr = PetscFindInt(cell, numSubpoints, subpoints, &subpoint);CHKERRQ(ierr); 16790f66a230SMatthew G. Knepley ierr = PetscFindInt(face, numSubpoints, subpoints, &subface);CHKERRQ(ierr); 16800f66a230SMatthew G. Knepley ierr = DMPlexGetConeSize(subdm, subpoint, &subconeSize);CHKERRQ(ierr); 16810f66a230SMatthew G. Knepley ierr = DMPlexGetCone(subdm, subpoint, &subcone);CHKERRQ(ierr); 16820f66a230SMatthew G. Knepley ierr = DMPlexGetConeOrientation(subdm, subpoint, &subornt);CHKERRQ(ierr); 16830f66a230SMatthew G. Knepley for (sc = 0; sc < subconeSize; ++sc) { 16840f66a230SMatthew G. Knepley if (subcone[sc] == subface) { 16850f66a230SMatthew G. Knepley o = subornt[0]; 16860f66a230SMatthew G. Knepley break; 16870f66a230SMatthew G. Knepley } 16880f66a230SMatthew G. Knepley } 16890f66a230SMatthew G. Knepley if (sc >= subconeSize) SETERRQ4(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find subpoint %d (%d) in cone for subpoint %d (%d)", subface, face, subpoint, cell); 16900f66a230SMatthew G. Knepley } 16910f66a230SMatthew G. Knepley if (o >= 0) *pos = PETSC_TRUE; 16920f66a230SMatthew G. Knepley else *pos = PETSC_FALSE; 16930f66a230SMatthew G. Knepley break; 16940f66a230SMatthew G. Knepley } 16950f66a230SMatthew G. Knepley } 16960f66a230SMatthew G. Knepley if (c == coneSize) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Cell %d in split face %d support does not have it in the cone", cell, face); 16970f66a230SMatthew G. Knepley PetscFunctionReturn(0); 16980f66a230SMatthew G. Knepley } 16990f66a230SMatthew G. Knepley 1700cd0c2139SMatthew G Knepley /*@ 17010f66a230SMatthew G. Knepley DMPlexLabelCohesiveComplete - Starting with a label marking points on an internal surface, we add all other mesh pieces 1702cd0c2139SMatthew G Knepley to complete the surface 1703cd0c2139SMatthew G Knepley 1704cd0c2139SMatthew G Knepley Input Parameters: 1705cd0c2139SMatthew G Knepley + dm - The DM 17060f66a230SMatthew G. Knepley . label - A DMLabel marking the surface 17070f66a230SMatthew G. Knepley . blabel - A DMLabel marking the vertices on the boundary which will not be duplicated, or NULL to find them automatically 1708bb55d314SMatthew G. Knepley . flip - Flag to flip the submesh normal and replace points on the other side 170947946fd8SMatthew G. Knepley - subdm - The subDM associated with the label, or NULL 1710cd0c2139SMatthew G Knepley 1711cd0c2139SMatthew G Knepley Output Parameter: 1712cd0c2139SMatthew G Knepley . label - A DMLabel marking all surface points 1713cd0c2139SMatthew G Knepley 17140f66a230SMatthew G. Knepley Note: The vertices in blabel are called "unsplit" in the terminology from hybrid cell creation. 17150f66a230SMatthew G. Knepley 1716cd0c2139SMatthew G Knepley Level: developer 1717cd0c2139SMatthew G Knepley 17182be2b188SMatthew G Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelComplete() 1719cd0c2139SMatthew G Knepley @*/ 17200f66a230SMatthew G. Knepley PetscErrorCode DMPlexLabelCohesiveComplete(DM dm, DMLabel label, DMLabel blabel, PetscBool flip, DM subdm) 1721cd0c2139SMatthew G Knepley { 1722d90583fdSMatthew G. Knepley DMLabel depthLabel; 17238630cb1aSMatthew G. Knepley IS dimIS, subpointIS = NULL, facePosIS, faceNegIS, crossEdgeIS = NULL; 172447946fd8SMatthew G. Knepley const PetscInt *points, *subpoints; 1725bb55d314SMatthew G. Knepley const PetscInt rev = flip ? -1 : 1; 1726412e9a14SMatthew G. Knepley PetscInt shift = 100, shift2 = 200, dim, depth, dep, cStart, cEnd, vStart, vEnd, numPoints, numSubpoints, p, val; 1727cd0c2139SMatthew G Knepley PetscErrorCode ierr; 1728cd0c2139SMatthew G Knepley 1729cd0c2139SMatthew G Knepley PetscFunctionBegin; 1730370472baSMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 1731370472baSMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 1732d90583fdSMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depthLabel);CHKERRQ(ierr); 173347946fd8SMatthew G. Knepley if (subdm) { 1734*97d8846cSMatthew Knepley ierr = DMPlexGetSubpointIS(subdm, &subpointIS);CHKERRQ(ierr); 173547946fd8SMatthew G. Knepley if (subpointIS) { 173647946fd8SMatthew G. Knepley ierr = ISGetLocalSize(subpointIS, &numSubpoints);CHKERRQ(ierr); 173747946fd8SMatthew G. Knepley ierr = ISGetIndices(subpointIS, &subpoints);CHKERRQ(ierr); 173847946fd8SMatthew G. Knepley } 173947946fd8SMatthew G. Knepley } 1740d7c8f101SMatthew G. Knepley /* Mark cell on the fault, and its faces which touch the fault: cell orientation for face gives the side of the fault */ 1741cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, dim-1, &dimIS);CHKERRQ(ierr); 1742*97d8846cSMatthew Knepley if (!dimIS) PetscFunctionReturn(0); 1743cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 1744cd0c2139SMatthew G Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 1745d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault faces */ 1746cd0c2139SMatthew G Knepley const PetscInt *support; 1747cd0c2139SMatthew G Knepley PetscInt supportSize, s; 1748cd0c2139SMatthew G Knepley 1749cd0c2139SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, points[p], &supportSize);CHKERRQ(ierr); 1750c4419245SMatthew G. Knepley #if 0 1751c4419245SMatthew G. Knepley if (supportSize != 2) { 1752c4419245SMatthew G. Knepley const PetscInt *lp; 1753c4419245SMatthew G. Knepley PetscInt Nlp, pind; 1754c4419245SMatthew G. Knepley 1755c4419245SMatthew G. Knepley /* Check that for a cell with a single support face, that face is in the SF */ 1756c4419245SMatthew G. Knepley /* THis check only works for the remote side. We would need root side information */ 1757c4419245SMatthew G. Knepley ierr = PetscSFGetGraph(dm->sf, NULL, &Nlp, &lp, NULL);CHKERRQ(ierr); 1758c4419245SMatthew G. Knepley ierr = PetscFindInt(points[p], Nlp, lp, &pind);CHKERRQ(ierr); 1759c4419245SMatthew G. Knepley if (pind < 0) SETERRQ2(PetscObjectComm((PetscObject) dm), PETSC_ERR_ARG_WRONG, "Split face %d has %d != 2 supports, and the face is not shared with another process", points[p], supportSize); 1760c4419245SMatthew G. Knepley } 1761c4419245SMatthew G. Knepley #endif 1762cd0c2139SMatthew G Knepley ierr = DMPlexGetSupport(dm, points[p], &support);CHKERRQ(ierr); 1763cd0c2139SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 17640f66a230SMatthew G. Knepley const PetscInt *cone; 1765cd0c2139SMatthew G Knepley PetscInt coneSize, c; 17660f66a230SMatthew G. Knepley PetscBool pos; 1767cd0c2139SMatthew G Knepley 17680f66a230SMatthew G. Knepley ierr = GetSurfaceSide_Static(dm, subdm, numSubpoints, subpoints, support[s], points[p], &pos);CHKERRQ(ierr); 17690f66a230SMatthew G. Knepley if (pos) {ierr = DMLabelSetValue(label, support[s], rev*(shift+dim));CHKERRQ(ierr);} 17700f66a230SMatthew G. Knepley else {ierr = DMLabelSetValue(label, support[s], -rev*(shift+dim));CHKERRQ(ierr);} 17710f66a230SMatthew G. Knepley if (rev < 0) pos = !pos ? PETSC_TRUE : PETSC_FALSE; 17720f66a230SMatthew G. Knepley /* Put faces touching the fault in the label */ 1773cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, support[s], &coneSize);CHKERRQ(ierr); 1774cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, support[s], &cone);CHKERRQ(ierr); 1775cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1776cd0c2139SMatthew G Knepley const PetscInt point = cone[c]; 1777cd0c2139SMatthew G Knepley 1778cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1779cd0c2139SMatthew G Knepley if (val == -1) { 1780cd0c2139SMatthew G Knepley PetscInt *closure = NULL; 1781cd0c2139SMatthew G Knepley PetscInt closureSize, cl; 1782cd0c2139SMatthew G Knepley 1783cd0c2139SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1784cd0c2139SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1785cd0c2139SMatthew G Knepley const PetscInt clp = closure[cl]; 1786a0541d8aSMatthew G. Knepley PetscInt bval = -1; 1787cd0c2139SMatthew G Knepley 1788cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, clp, &val);CHKERRQ(ierr); 1789a0541d8aSMatthew G. Knepley if (blabel) {ierr = DMLabelGetValue(blabel, clp, &bval);CHKERRQ(ierr);} 1790a0541d8aSMatthew G. Knepley if ((val >= 0) && (val < dim-1) && (bval < 0)) { 1791cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(label, point, pos == PETSC_TRUE ? shift+dim-1 : -(shift+dim-1));CHKERRQ(ierr); 1792cd0c2139SMatthew G Knepley break; 1793cd0c2139SMatthew G Knepley } 1794cd0c2139SMatthew G Knepley } 1795cd0c2139SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1796cd0c2139SMatthew G Knepley } 1797cd0c2139SMatthew G Knepley } 1798cd0c2139SMatthew G Knepley } 1799cd0c2139SMatthew G Knepley } 18000f66a230SMatthew G. Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 18010f66a230SMatthew G. Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 180247946fd8SMatthew G. Knepley if (subpointIS) {ierr = ISRestoreIndices(subpointIS, &subpoints);CHKERRQ(ierr);} 1803a0541d8aSMatthew G. Knepley /* Mark boundary points as unsplit */ 180486200784SMatthew G. Knepley if (blabel) { 1805a0541d8aSMatthew G. Knepley ierr = DMLabelGetStratumIS(blabel, 1, &dimIS);CHKERRQ(ierr); 1806a0541d8aSMatthew G. Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 1807a0541d8aSMatthew G. Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 1808a0541d8aSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1809a0541d8aSMatthew G. Knepley const PetscInt point = points[p]; 1810a0541d8aSMatthew G. Knepley PetscInt val, bval; 1811a0541d8aSMatthew G. Knepley 1812a0541d8aSMatthew G. Knepley ierr = DMLabelGetValue(blabel, point, &bval);CHKERRQ(ierr); 1813a0541d8aSMatthew G. Knepley if (bval >= 0) { 1814f7019248SMatthew G. Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1815f7019248SMatthew G. Knepley if ((val < 0) || (val > dim)) { 1816f7019248SMatthew G. Knepley /* This could be a point added from splitting a vertex on an adjacent fault, otherwise its just wrong */ 1817f7019248SMatthew G. Knepley ierr = DMLabelClearValue(blabel, point, bval);CHKERRQ(ierr); 1818f7019248SMatthew G. Knepley } 1819f7019248SMatthew G. Knepley } 1820f7019248SMatthew G. Knepley } 1821f7019248SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 1822f7019248SMatthew G. Knepley const PetscInt point = points[p]; 1823f7019248SMatthew G. Knepley PetscInt val, bval; 1824f7019248SMatthew G. Knepley 1825f7019248SMatthew G. Knepley ierr = DMLabelGetValue(blabel, point, &bval);CHKERRQ(ierr); 1826f7019248SMatthew G. Knepley if (bval >= 0) { 182786200784SMatthew G. Knepley const PetscInt *cone, *support; 182886200784SMatthew G. Knepley PetscInt coneSize, supportSize, s, valA, valB, valE; 182986200784SMatthew G. Knepley 1830a0541d8aSMatthew G. Knepley /* Mark as unsplit */ 1831a0541d8aSMatthew G. Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1832a0541d8aSMatthew G. Knepley if ((val < 0) || (val > dim)) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Point %d has label value %d, should be part of the fault", point, val); 1833a0541d8aSMatthew G. Knepley ierr = DMLabelClearValue(label, point, val);CHKERRQ(ierr); 1834a0541d8aSMatthew G. Knepley ierr = DMLabelSetValue(label, point, shift2+val);CHKERRQ(ierr); 18352c06a818SMatthew G. Knepley /* Check for cross-edge 18362c06a818SMatthew G. Knepley A cross-edge has endpoints which are both on the boundary of the surface, but the edge itself is not. */ 183786200784SMatthew G. Knepley if (val != 0) continue; 183886200784SMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 183986200784SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 184086200784SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 184186200784SMatthew G. Knepley ierr = DMPlexGetCone(dm, support[s], &cone);CHKERRQ(ierr); 184286200784SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, support[s], &coneSize);CHKERRQ(ierr); 184386200784SMatthew G. Knepley if (coneSize != 2) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Edge %D has %D vertices != 2", support[s], coneSize); 184486200784SMatthew G. Knepley ierr = DMLabelGetValue(blabel, cone[0], &valA);CHKERRQ(ierr); 184586200784SMatthew G. Knepley ierr = DMLabelGetValue(blabel, cone[1], &valB);CHKERRQ(ierr); 184686200784SMatthew G. Knepley ierr = DMLabelGetValue(blabel, support[s], &valE);CHKERRQ(ierr); 184709816f77SMatthew G. Knepley if ((valE < 0) && (valA >= 0) && (valB >= 0) && (cone[0] != cone[1])) {ierr = DMLabelSetValue(blabel, support[s], 2);CHKERRQ(ierr);} 184886200784SMatthew G. Knepley } 1849a0541d8aSMatthew G. Knepley } 1850a0541d8aSMatthew G. Knepley } 1851a0541d8aSMatthew G. Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 1852a0541d8aSMatthew G. Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 1853a0541d8aSMatthew G. Knepley } 1854cd0c2139SMatthew G Knepley /* Search for other cells/faces/edges connected to the fault by a vertex */ 1855c4d480a2SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 1856412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, 0, &cStart, &cEnd);CHKERRQ(ierr); 1857cd0c2139SMatthew G Knepley ierr = DMLabelGetStratumIS(label, 0, &dimIS);CHKERRQ(ierr); 185886200784SMatthew G. Knepley if (blabel) {ierr = DMLabelGetStratumIS(blabel, 2, &crossEdgeIS);CHKERRQ(ierr);} 185986200784SMatthew G. Knepley if (dimIS && crossEdgeIS) { 186086200784SMatthew G. Knepley IS vertIS = dimIS; 186186200784SMatthew G. Knepley 186286200784SMatthew G. Knepley ierr = ISExpand(vertIS, crossEdgeIS, &dimIS);CHKERRQ(ierr); 186386200784SMatthew G. Knepley ierr = ISDestroy(&crossEdgeIS);CHKERRQ(ierr); 186486200784SMatthew G. Knepley ierr = ISDestroy(&vertIS);CHKERRQ(ierr); 186586200784SMatthew G. Knepley } 1866dc86033cSMatthew G. Knepley if (!dimIS) { 1867dc86033cSMatthew G. Knepley PetscFunctionReturn(0); 1868dc86033cSMatthew G. Knepley } 1869cd0c2139SMatthew G Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 1870cd0c2139SMatthew G Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 1871d7c8f101SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { /* Loop over fault vertices */ 1872cd0c2139SMatthew G Knepley PetscInt *star = NULL; 187386200784SMatthew G. Knepley PetscInt starSize, s; 1874cd0c2139SMatthew G Knepley PetscInt again = 1; /* 0: Finished 1: Keep iterating after a change 2: No change */ 1875cd0c2139SMatthew G Knepley 1876d4622b2cSMatthew G. Knepley /* All points connected to the fault are inside a cell, so at the top level we will only check cells */ 1877cd0c2139SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 1878cd0c2139SMatthew G Knepley while (again) { 1879cd0c2139SMatthew G Knepley if (again > 1) SETERRQ(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Could not classify all cells connected to the fault"); 1880cd0c2139SMatthew G Knepley again = 0; 1881cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 1882cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 1883cd0c2139SMatthew G Knepley const PetscInt *cone; 1884cd0c2139SMatthew G Knepley PetscInt coneSize, c; 1885cd0c2139SMatthew G Knepley 1886412e9a14SMatthew G. Knepley if ((point < cStart) || (point >= cEnd)) continue; 1887cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1888cd0c2139SMatthew G Knepley if (val != -1) continue; 1889d4622b2cSMatthew G. Knepley again = again == 1 ? 1 : 2; 1890cd0c2139SMatthew G Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 1891cd0c2139SMatthew G Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 1892cd0c2139SMatthew G Knepley for (c = 0; c < coneSize; ++c) { 1893cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, cone[c], &val);CHKERRQ(ierr); 1894cd0c2139SMatthew G Knepley if (val != -1) { 1895d7c8f101SMatthew G. Knepley const PetscInt *ccone; 1896166d9d0cSMatthew G. Knepley PetscInt cconeSize, cc, side; 1897d7c8f101SMatthew G. Knepley 1898db8edaafSMatthew G. Knepley if (PetscAbs(val) < shift) SETERRQ3(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d on cell %d has an invalid label %d", cone[c], point, val); 189937a6de01SMatthew G. Knepley if (val > 0) side = 1; 190037a6de01SMatthew G. Knepley else side = -1; 190137a6de01SMatthew G. Knepley ierr = DMLabelSetValue(label, point, side*(shift+dim));CHKERRQ(ierr); 1902d7c8f101SMatthew G. Knepley /* Mark cell faces which touch the fault */ 1903d7c8f101SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, point, &cconeSize);CHKERRQ(ierr); 1904d7c8f101SMatthew G. Knepley ierr = DMPlexGetCone(dm, point, &ccone);CHKERRQ(ierr); 1905d7c8f101SMatthew G. Knepley for (cc = 0; cc < cconeSize; ++cc) { 1906d7c8f101SMatthew G. Knepley PetscInt *closure = NULL; 1907d7c8f101SMatthew G. Knepley PetscInt closureSize, cl; 1908d7c8f101SMatthew G. Knepley 1909166d9d0cSMatthew G. Knepley ierr = DMLabelGetValue(label, ccone[cc], &val);CHKERRQ(ierr); 1910166d9d0cSMatthew G. Knepley if (val != -1) continue; 1911d7c8f101SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1912d4622b2cSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 1913d7c8f101SMatthew G. Knepley const PetscInt clp = closure[cl]; 1914d7c8f101SMatthew G. Knepley 1915d7c8f101SMatthew G. Knepley ierr = DMLabelGetValue(label, clp, &val);CHKERRQ(ierr); 1916d7c8f101SMatthew G. Knepley if (val == -1) continue; 1917d7c8f101SMatthew G. Knepley ierr = DMLabelSetValue(label, ccone[cc], side*(shift+dim-1));CHKERRQ(ierr); 191837a6de01SMatthew G. Knepley break; 191937a6de01SMatthew G. Knepley } 1920d7c8f101SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, ccone[cc], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 1921cd0c2139SMatthew G Knepley } 1922cd0c2139SMatthew G Knepley again = 1; 1923cd0c2139SMatthew G Knepley break; 1924cd0c2139SMatthew G Knepley } 1925cd0c2139SMatthew G Knepley } 1926cd0c2139SMatthew G Knepley } 1927cd0c2139SMatthew G Knepley } 1928cd0c2139SMatthew G Knepley /* Classify the rest by cell membership */ 1929cd0c2139SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 1930cd0c2139SMatthew G Knepley const PetscInt point = star[s]; 1931cd0c2139SMatthew G Knepley 1932cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, point, &val);CHKERRQ(ierr); 1933cd0c2139SMatthew G Knepley if (val == -1) { 1934cd0c2139SMatthew G Knepley PetscInt *sstar = NULL; 1935cd0c2139SMatthew G Knepley PetscInt sstarSize, ss; 1936412e9a14SMatthew G. Knepley PetscBool marked = PETSC_FALSE, isHybrid; 1937cd0c2139SMatthew G Knepley 1938cd0c2139SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar);CHKERRQ(ierr); 1939cd0c2139SMatthew G Knepley for (ss = 0; ss < sstarSize*2; ss += 2) { 1940cd0c2139SMatthew G Knepley const PetscInt spoint = sstar[ss]; 1941cd0c2139SMatthew G Knepley 1942412e9a14SMatthew G. Knepley if ((spoint < cStart) || (spoint >= cEnd)) continue; 1943cd0c2139SMatthew G Knepley ierr = DMLabelGetValue(label, spoint, &val);CHKERRQ(ierr); 1944cd0c2139SMatthew G Knepley if (val == -1) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d in star of %d does not have a valid label", spoint, point); 1945d90583fdSMatthew G. Knepley ierr = DMLabelGetValue(depthLabel, point, &dep);CHKERRQ(ierr); 1946cd0c2139SMatthew G Knepley if (val > 0) { 1947cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(label, point, shift+dep);CHKERRQ(ierr); 1948cd0c2139SMatthew G Knepley } else { 1949cd0c2139SMatthew G Knepley ierr = DMLabelSetValue(label, point, -(shift+dep));CHKERRQ(ierr); 1950cd0c2139SMatthew G Knepley } 1951cd0c2139SMatthew G Knepley marked = PETSC_TRUE; 1952cd0c2139SMatthew G Knepley break; 1953cd0c2139SMatthew G Knepley } 1954cd0c2139SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, point, PETSC_FALSE, &sstarSize, &sstar);CHKERRQ(ierr); 1955412e9a14SMatthew G. Knepley ierr = DMPlexCellIsHybrid_Internal(dm, point, &isHybrid);CHKERRQ(ierr); 1956412e9a14SMatthew G. Knepley if (!isHybrid && !marked) SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Point %d could not be classified", point); 1957cd0c2139SMatthew G Knepley } 1958cd0c2139SMatthew G Knepley } 1959cd0c2139SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 1960cd0c2139SMatthew G Knepley } 1961cd0c2139SMatthew G Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 1962cd0c2139SMatthew G Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 196318c5995bSMatthew G. Knepley /* If any faces touching the fault divide cells on either side, split them */ 196418c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, shift+dim-1, &facePosIS);CHKERRQ(ierr); 196518c5995bSMatthew G. Knepley ierr = DMLabelGetStratumIS(label, -(shift+dim-1), &faceNegIS);CHKERRQ(ierr); 196618c5995bSMatthew G. Knepley ierr = ISExpand(facePosIS, faceNegIS, &dimIS);CHKERRQ(ierr); 196718c5995bSMatthew G. Knepley ierr = ISDestroy(&facePosIS);CHKERRQ(ierr); 196818c5995bSMatthew G. Knepley ierr = ISDestroy(&faceNegIS);CHKERRQ(ierr); 196918c5995bSMatthew G. Knepley ierr = ISGetLocalSize(dimIS, &numPoints);CHKERRQ(ierr); 197018c5995bSMatthew G. Knepley ierr = ISGetIndices(dimIS, &points);CHKERRQ(ierr); 197118c5995bSMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 197218c5995bSMatthew G. Knepley const PetscInt point = points[p]; 197318c5995bSMatthew G. Knepley const PetscInt *support; 197418c5995bSMatthew G. Knepley PetscInt supportSize, valA, valB; 197518c5995bSMatthew G. Knepley 197618c5995bSMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 197718c5995bSMatthew G. Knepley if (supportSize != 2) continue; 197818c5995bSMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 197918c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, support[0], &valA);CHKERRQ(ierr); 198018c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, support[1], &valB);CHKERRQ(ierr); 198118c5995bSMatthew G. Knepley if ((valA == -1) || (valB == -1)) continue; 198218c5995bSMatthew G. Knepley if (valA*valB > 0) continue; 198318c5995bSMatthew G. Knepley /* Split the face */ 198418c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, point, &valA);CHKERRQ(ierr); 198518c5995bSMatthew G. Knepley ierr = DMLabelClearValue(label, point, valA);CHKERRQ(ierr); 198618c5995bSMatthew G. Knepley ierr = DMLabelSetValue(label, point, dim-1);CHKERRQ(ierr); 1987e1757548SMatthew G. Knepley /* Label its closure: 1988e1757548SMatthew G. Knepley unmarked: label as unsplit 1989e1757548SMatthew G. Knepley incident: relabel as split 1990e1757548SMatthew G. Knepley split: do nothing 1991e1757548SMatthew G. Knepley */ 199218c5995bSMatthew G. Knepley { 199318c5995bSMatthew G. Knepley PetscInt *closure = NULL; 199418c5995bSMatthew G. Knepley PetscInt closureSize, cl; 199518c5995bSMatthew G. Knepley 199618c5995bSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 199718c5995bSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 199818c5995bSMatthew G. Knepley ierr = DMLabelGetValue(label, closure[cl], &valA);CHKERRQ(ierr); 19998771c1d3SMatthew G. Knepley if (valA == -1) { /* Mark as unsplit */ 200018c5995bSMatthew G. Knepley ierr = DMLabelGetValue(depthLabel, closure[cl], &dep);CHKERRQ(ierr); 200118c5995bSMatthew G. Knepley ierr = DMLabelSetValue(label, closure[cl], shift2+dep);CHKERRQ(ierr); 20028771c1d3SMatthew G. Knepley } else if (((valA >= shift) && (valA < shift2)) || ((valA <= -shift) && (valA > -shift2))) { 2003e1757548SMatthew G. Knepley ierr = DMLabelGetValue(depthLabel, closure[cl], &dep);CHKERRQ(ierr); 2004e1757548SMatthew G. Knepley ierr = DMLabelClearValue(label, closure[cl], valA);CHKERRQ(ierr); 2005e1757548SMatthew G. Knepley ierr = DMLabelSetValue(label, closure[cl], dep);CHKERRQ(ierr); 2006e1757548SMatthew G. Knepley } 200718c5995bSMatthew G. Knepley } 200818c5995bSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, point, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 200918c5995bSMatthew G. Knepley } 201018c5995bSMatthew G. Knepley } 201118c5995bSMatthew G. Knepley ierr = ISRestoreIndices(dimIS, &points);CHKERRQ(ierr); 201218c5995bSMatthew G. Knepley ierr = ISDestroy(&dimIS);CHKERRQ(ierr); 2013cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2014cd0c2139SMatthew G Knepley } 2015cd0c2139SMatthew G Knepley 2016720e594eSMatthew G. Knepley /* Check that no cell have all vertices on the fault */ 2017720e594eSMatthew G. Knepley PetscErrorCode DMPlexCheckValidSubmesh_Private(DM dm, DMLabel label, DM subdm) 2018720e594eSMatthew G. Knepley { 2019720e594eSMatthew G. Knepley IS subpointIS; 2020720e594eSMatthew G. Knepley const PetscInt *dmpoints; 2021720e594eSMatthew G. Knepley PetscInt defaultValue, cStart, cEnd, c, vStart, vEnd; 2022720e594eSMatthew G. Knepley PetscErrorCode ierr; 2023720e594eSMatthew G. Knepley 2024720e594eSMatthew G. Knepley PetscFunctionBegin; 2025720e594eSMatthew G. Knepley if (!label) PetscFunctionReturn(0); 2026720e594eSMatthew G. Knepley ierr = DMLabelGetDefaultValue(label, &defaultValue);CHKERRQ(ierr); 2027*97d8846cSMatthew Knepley ierr = DMPlexGetSubpointIS(subdm, &subpointIS);CHKERRQ(ierr); 2028720e594eSMatthew G. Knepley if (!subpointIS) PetscFunctionReturn(0); 2029720e594eSMatthew G. Knepley ierr = DMPlexGetHeightStratum(subdm, 0, &cStart, &cEnd);CHKERRQ(ierr); 2030720e594eSMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 2031720e594eSMatthew G. Knepley ierr = ISGetIndices(subpointIS, &dmpoints);CHKERRQ(ierr); 2032720e594eSMatthew G. Knepley for (c = cStart; c < cEnd; ++c) { 2033720e594eSMatthew G. Knepley PetscBool invalidCell = PETSC_TRUE; 2034720e594eSMatthew G. Knepley PetscInt *closure = NULL; 2035720e594eSMatthew G. Knepley PetscInt closureSize, cl; 2036720e594eSMatthew G. Knepley 2037720e594eSMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2038720e594eSMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2039720e594eSMatthew G. Knepley PetscInt value = 0; 2040720e594eSMatthew G. Knepley 2041720e594eSMatthew G. Knepley if ((closure[cl] < vStart) || (closure[cl] >= vEnd)) continue; 2042720e594eSMatthew G. Knepley ierr = DMLabelGetValue(label, closure[cl], &value);CHKERRQ(ierr); 2043720e594eSMatthew G. Knepley if (value == defaultValue) {invalidCell = PETSC_FALSE; break;} 2044720e594eSMatthew G. Knepley } 2045720e594eSMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, dmpoints[c], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2046720e594eSMatthew G. Knepley if (invalidCell) { 2047720e594eSMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &dmpoints);CHKERRQ(ierr); 2048720e594eSMatthew G. Knepley ierr = ISDestroy(&subpointIS);CHKERRQ(ierr); 2049720e594eSMatthew G. Knepley ierr = DMDestroy(&subdm);CHKERRQ(ierr); 2050720e594eSMatthew G. Knepley SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Ambiguous submesh. Cell %D has all of its vertices on the submesh.", dmpoints[c]); 2051720e594eSMatthew G. Knepley } 2052720e594eSMatthew G. Knepley } 2053720e594eSMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &dmpoints);CHKERRQ(ierr); 2054720e594eSMatthew G. Knepley PetscFunctionReturn(0); 2055720e594eSMatthew G. Knepley } 2056720e594eSMatthew G. Knepley 2057720e594eSMatthew G. Knepley 2058c08575a3SMatthew G. Knepley /*@ 20593cf72582SMatthew G. Knepley DMPlexCreateHybridMesh - Create a mesh with hybrid cells along an internal interface 20603cf72582SMatthew G. Knepley 20613cf72582SMatthew G. Knepley Collective on dm 20623cf72582SMatthew G. Knepley 20633cf72582SMatthew G. Knepley Input Parameters: 20643cf72582SMatthew G. Knepley + dm - The original DM 2065720e594eSMatthew G. Knepley . label - The label specifying the interface vertices 2066720e594eSMatthew G. Knepley - bdlabel - The optional label specifying the interface boundary vertices 20673cf72582SMatthew G. Knepley 20683cf72582SMatthew G. Knepley Output Parameters: 20697db7e0a7SMatthew G. Knepley + hybridLabel - The label fully marking the interface, or NULL if no output is desired 20707db7e0a7SMatthew G. Knepley . splitLabel - The label containing the split points, or NULL if no output is desired 2071720e594eSMatthew G. Knepley . dmInterface - The new interface DM, or NULL 2072720e594eSMatthew G. Knepley - dmHybrid - The new DM with cohesive cells 20733cf72582SMatthew G. Knepley 20746eccb800SMatthew Knepley Note: The hybridLabel indicates what parts of the original mesh impinged on the on division surface. For points 20756eccb800SMatthew Knepley directly on the division surface, they are labeled with their dimension, so an edge 7 on the division surface would be 20766eccb800SMatthew Knepley 7 (1) in hybridLabel. For points that impinge from the positive side, they are labeled with 100+dim, so an edge 6 with 20776eccb800SMatthew Knepley one vertex 3 on the surface would be 6 (101) and 3 (0) in hybridLabel. If an edge 9 from the negative side of the 20786eccb800SMatthew Knepley surface also hits vertex 3, it would be 9 (-101) in hybridLabel. 20796eccb800SMatthew Knepley 20806eccb800SMatthew Knepley The splitLabel indicates what points in the new hybrid mesh were the result of splitting points in the original 20816eccb800SMatthew Knepley mesh. The label value is +=100+dim for each point. For example, if two edges 10 and 14 in the hybrid resulting from 20826eccb800SMatthew Knepley splitting an edge in the original mesh, you would have 10 (101) and 14 (-101) in the splitLabel. 20836eccb800SMatthew Knepley 20846eccb800SMatthew Knepley The dmInterface is a DM built from the original division surface. It has a label which can be retrieved using 20856eccb800SMatthew Knepley DMPlexGetSubpointMap() which maps each point back to the point in the surface of the original mesh. 20866eccb800SMatthew Knepley 20873cf72582SMatthew G. Knepley Level: developer 20883cf72582SMatthew G. Knepley 20896eccb800SMatthew Knepley .seealso: DMPlexConstructCohesiveCells(), DMPlexLabelCohesiveComplete(), DMPlexGetSubpointMap(), DMCreate() 20903cf72582SMatthew G. Knepley @*/ 20917db7e0a7SMatthew G. Knepley PetscErrorCode DMPlexCreateHybridMesh(DM dm, DMLabel label, DMLabel bdlabel, DMLabel *hybridLabel, DMLabel *splitLabel, DM *dmInterface, DM *dmHybrid) 20923cf72582SMatthew G. Knepley { 20933cf72582SMatthew G. Knepley DM idm; 20947db7e0a7SMatthew G. Knepley DMLabel subpointMap, hlabel, slabel = NULL; 20953cf72582SMatthew G. Knepley PetscInt dim; 20963cf72582SMatthew G. Knepley PetscErrorCode ierr; 20973cf72582SMatthew G. Knepley 20983cf72582SMatthew G. Knepley PetscFunctionBegin; 20993cf72582SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 2100720e594eSMatthew G. Knepley if (bdlabel) PetscValidPointer(bdlabel, 3); 2101720e594eSMatthew G. Knepley if (hybridLabel) PetscValidPointer(hybridLabel, 4); 21027db7e0a7SMatthew G. Knepley if (splitLabel) PetscValidPointer(splitLabel, 5); 21037db7e0a7SMatthew G. Knepley if (dmInterface) PetscValidPointer(dmInterface, 6); 21047db7e0a7SMatthew G. Knepley PetscValidPointer(dmHybrid, 7); 2105c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2106158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmesh(dm, label, 1, PETSC_FALSE, &idm);CHKERRQ(ierr); 2107720e594eSMatthew G. Knepley ierr = DMPlexCheckValidSubmesh_Private(dm, label, idm);CHKERRQ(ierr); 21083cf72582SMatthew G. Knepley ierr = DMPlexOrient(idm);CHKERRQ(ierr); 21093cf72582SMatthew G. Knepley ierr = DMPlexGetSubpointMap(idm, &subpointMap);CHKERRQ(ierr); 21103cf72582SMatthew G. Knepley ierr = DMLabelDuplicate(subpointMap, &hlabel);CHKERRQ(ierr); 21113cf72582SMatthew G. Knepley ierr = DMLabelClearStratum(hlabel, dim);CHKERRQ(ierr); 21127db7e0a7SMatthew G. Knepley if (splitLabel) { 21137db7e0a7SMatthew G. Knepley const char *name; 21147db7e0a7SMatthew G. Knepley char sname[PETSC_MAX_PATH_LEN]; 21157db7e0a7SMatthew G. Knepley 2116d67d17b1SMatthew G. Knepley ierr = PetscObjectGetName((PetscObject) hlabel, &name);CHKERRQ(ierr); 21177db7e0a7SMatthew G. Knepley ierr = PetscStrncpy(sname, name, PETSC_MAX_PATH_LEN);CHKERRQ(ierr); 21187db7e0a7SMatthew G. Knepley ierr = PetscStrcat(sname, " split");CHKERRQ(ierr); 2119d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, sname, &slabel);CHKERRQ(ierr); 21207db7e0a7SMatthew G. Knepley } 2121720e594eSMatthew G. Knepley ierr = DMPlexLabelCohesiveComplete(dm, hlabel, bdlabel, PETSC_FALSE, idm);CHKERRQ(ierr); 2122720e594eSMatthew G. Knepley if (dmInterface) {*dmInterface = idm;} 2123720e594eSMatthew G. Knepley else {ierr = DMDestroy(&idm);CHKERRQ(ierr);} 21247db7e0a7SMatthew G. Knepley ierr = DMPlexConstructCohesiveCells(dm, hlabel, slabel, dmHybrid);CHKERRQ(ierr); 21253cf72582SMatthew G. Knepley if (hybridLabel) *hybridLabel = hlabel; 212653aa2e23SMatthew G. Knepley else {ierr = DMLabelDestroy(&hlabel);CHKERRQ(ierr);} 21277db7e0a7SMatthew G. Knepley if (splitLabel) *splitLabel = slabel; 2128cd0c2139SMatthew G Knepley PetscFunctionReturn(0); 2129cd0c2139SMatthew G Knepley } 2130cd0c2139SMatthew G Knepley 2131efa14ee0SMatthew G Knepley /* Here we need the explicit assumption that: 2132efa14ee0SMatthew G Knepley 2133efa14ee0SMatthew G Knepley For any marked cell, the marked vertices constitute a single face 2134efa14ee0SMatthew G Knepley */ 2135830e53efSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, DM subdm) 2136efa14ee0SMatthew G Knepley { 2137fed694aaSMatthew G. Knepley IS subvertexIS = NULL; 2138efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2139412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd, pSize; 2140efa14ee0SMatthew G Knepley PetscInt depth, dim, d, numSubVerticesInitial = 0, v; 2141efa14ee0SMatthew G Knepley PetscErrorCode ierr; 2142efa14ee0SMatthew G Knepley 2143efa14ee0SMatthew G Knepley PetscFunctionBegin; 2144efa14ee0SMatthew G Knepley *numFaces = 0; 2145efa14ee0SMatthew G Knepley *nFV = 0; 2146efa14ee0SMatthew G Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 2147c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 214877d178adSMatthew G. Knepley pSize = PetscMax(depth, dim) + 1; 2149412e9a14SMatthew G. Knepley ierr = PetscMalloc2(pSize, &pStart, pSize, &pEnd);CHKERRQ(ierr); 2150efa14ee0SMatthew G Knepley for (d = 0; d <= depth; ++d) { 2151412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, depth-d, &pStart[d], &pEnd[d]);CHKERRQ(ierr); 2152efa14ee0SMatthew G Knepley } 2153efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 2154fed694aaSMatthew G. Knepley if (vertexLabel) {ierr = DMLabelGetStratumIS(vertexLabel, value, &subvertexIS);CHKERRQ(ierr);} 2155efa14ee0SMatthew G Knepley if (subvertexIS) { 2156efa14ee0SMatthew G Knepley ierr = ISGetSize(subvertexIS, &numSubVerticesInitial);CHKERRQ(ierr); 2157efa14ee0SMatthew G Knepley ierr = ISGetIndices(subvertexIS, &subvertices);CHKERRQ(ierr); 2158efa14ee0SMatthew G Knepley } 2159efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2160efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 21610298fd71SBarry Smith PetscInt *star = NULL; 2162efa14ee0SMatthew G Knepley PetscInt starSize, s, numCells = 0, c; 2163efa14ee0SMatthew G Knepley 2164efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2165efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2166efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2167efa14ee0SMatthew G Knepley if ((point >= pStart[depth]) && (point < pEnd[depth])) star[numCells++] = point; 2168efa14ee0SMatthew G Knepley } 2169efa14ee0SMatthew G Knepley for (c = 0; c < numCells; ++c) { 2170efa14ee0SMatthew G Knepley const PetscInt cell = star[c]; 21710298fd71SBarry Smith PetscInt *closure = NULL; 2172efa14ee0SMatthew G Knepley PetscInt closureSize, cl; 2173efa14ee0SMatthew G Knepley PetscInt cellLoc, numCorners = 0, faceSize = 0; 2174efa14ee0SMatthew G Knepley 2175efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(subpointMap, cell, &cellLoc);CHKERRQ(ierr); 217665560c7fSMatthew G Knepley if (cellLoc == 2) continue; 217782f516ccSBarry Smith if (cellLoc >= 0) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Cell %d has dimension %d in the surface label", cell, cellLoc); 2178efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2179efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2180efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2181efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2182efa14ee0SMatthew G Knepley 2183efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2184efa14ee0SMatthew G Knepley ++numCorners; 2185efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(vertexLabel, point, &vertexLoc);CHKERRQ(ierr); 2186830e53efSMatthew G. Knepley if (vertexLoc == value) closure[faceSize++] = point; 2187efa14ee0SMatthew G Knepley } 2188efa14ee0SMatthew G Knepley } 218918ad9376SMatthew G. Knepley if (!(*nFV)) {ierr = DMPlexGetNumFaceVertices(dm, dim, numCorners, nFV);CHKERRQ(ierr);} 219082f516ccSBarry Smith if (faceSize > *nFV) SETERRQ1(PetscObjectComm((PetscObject)dm), PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 2191efa14ee0SMatthew G Knepley if (faceSize == *nFV) { 2192007baee2SMatthew G. Knepley const PetscInt *cells = NULL; 2193007baee2SMatthew G. Knepley PetscInt numCells, nc; 2194007baee2SMatthew G. Knepley 2195efa14ee0SMatthew G Knepley ++(*numFaces); 2196efa14ee0SMatthew G Knepley for (cl = 0; cl < faceSize; ++cl) { 2197efa14ee0SMatthew G Knepley ierr = DMLabelSetValue(subpointMap, closure[cl], 0);CHKERRQ(ierr); 2198efa14ee0SMatthew G Knepley } 2199007baee2SMatthew G. Knepley ierr = DMPlexGetJoin(dm, faceSize, closure, &numCells, &cells);CHKERRQ(ierr); 2200007baee2SMatthew G. Knepley for (nc = 0; nc < numCells; ++nc) { 2201007baee2SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, cells[nc], 2);CHKERRQ(ierr); 2202007baee2SMatthew G. Knepley } 2203007baee2SMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, faceSize, closure, &numCells, &cells);CHKERRQ(ierr); 2204efa14ee0SMatthew G Knepley } 2205efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2206efa14ee0SMatthew G Knepley } 2207efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2208efa14ee0SMatthew G Knepley } 2209efa14ee0SMatthew G Knepley if (subvertexIS) { 2210efa14ee0SMatthew G Knepley ierr = ISRestoreIndices(subvertexIS, &subvertices);CHKERRQ(ierr); 2211efa14ee0SMatthew G Knepley } 2212efa14ee0SMatthew G Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 2213412e9a14SMatthew G. Knepley ierr = PetscFree2(pStart, pEnd);CHKERRQ(ierr); 2214efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2215efa14ee0SMatthew G Knepley } 2216efa14ee0SMatthew G Knepley 2217158acfadSMatthew G. Knepley static PetscErrorCode DMPlexMarkSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DMLabel subpointMap, DM subdm) 2218efa14ee0SMatthew G Knepley { 221934b4c39eSMatthew G. Knepley IS subvertexIS = NULL; 2220efa14ee0SMatthew G Knepley const PetscInt *subvertices; 2221412e9a14SMatthew G. Knepley PetscInt *pStart, *pEnd; 2222efa14ee0SMatthew G Knepley PetscInt dim, d, numSubVerticesInitial = 0, v; 2223efa14ee0SMatthew G Knepley PetscErrorCode ierr; 2224efa14ee0SMatthew G Knepley 2225efa14ee0SMatthew G Knepley PetscFunctionBegin; 2226c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2227412e9a14SMatthew G. Knepley ierr = PetscMalloc2(dim+1, &pStart, dim+1, &pEnd);CHKERRQ(ierr); 2228efa14ee0SMatthew G Knepley for (d = 0; d <= dim; ++d) { 2229412e9a14SMatthew G. Knepley ierr = DMPlexGetSimplexOrBoxCells(dm, dim-d, &pStart[d], &pEnd[d]);CHKERRQ(ierr); 2230efa14ee0SMatthew G Knepley } 2231efa14ee0SMatthew G Knepley /* Loop over initial vertices and mark all faces in the collective star() */ 223234b4c39eSMatthew G. Knepley if (vertexLabel) { 2233830e53efSMatthew G. Knepley ierr = DMLabelGetStratumIS(vertexLabel, value, &subvertexIS);CHKERRQ(ierr); 2234efa14ee0SMatthew G Knepley if (subvertexIS) { 2235efa14ee0SMatthew G Knepley ierr = ISGetSize(subvertexIS, &numSubVerticesInitial);CHKERRQ(ierr); 2236efa14ee0SMatthew G Knepley ierr = ISGetIndices(subvertexIS, &subvertices);CHKERRQ(ierr); 2237efa14ee0SMatthew G Knepley } 223834b4c39eSMatthew G. Knepley } 2239efa14ee0SMatthew G Knepley for (v = 0; v < numSubVerticesInitial; ++v) { 2240efa14ee0SMatthew G Knepley const PetscInt vertex = subvertices[v]; 22410298fd71SBarry Smith PetscInt *star = NULL; 2242efa14ee0SMatthew G Knepley PetscInt starSize, s, numFaces = 0, f; 2243efa14ee0SMatthew G Knepley 2244efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2245efa14ee0SMatthew G Knepley for (s = 0; s < starSize*2; s += 2) { 2246efa14ee0SMatthew G Knepley const PetscInt point = star[s]; 2247158acfadSMatthew G. Knepley PetscInt faceLoc; 2248158acfadSMatthew G. Knepley 2249158acfadSMatthew G. Knepley if ((point >= pStart[dim-1]) && (point < pEnd[dim-1])) { 2250158acfadSMatthew G. Knepley if (markedFaces) { 2251158acfadSMatthew G. Knepley ierr = DMLabelGetValue(vertexLabel, point, &faceLoc);CHKERRQ(ierr); 2252158acfadSMatthew G. Knepley if (faceLoc < 0) continue; 2253158acfadSMatthew G. Knepley } 2254158acfadSMatthew G. Knepley star[numFaces++] = point; 2255158acfadSMatthew G. Knepley } 2256efa14ee0SMatthew G Knepley } 2257efa14ee0SMatthew G Knepley for (f = 0; f < numFaces; ++f) { 2258efa14ee0SMatthew G Knepley const PetscInt face = star[f]; 22590298fd71SBarry Smith PetscInt *closure = NULL; 2260efa14ee0SMatthew G Knepley PetscInt closureSize, c; 2261efa14ee0SMatthew G Knepley PetscInt faceLoc; 2262efa14ee0SMatthew G Knepley 2263efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(subpointMap, face, &faceLoc);CHKERRQ(ierr); 2264efa14ee0SMatthew G Knepley if (faceLoc == dim-1) continue; 226582f516ccSBarry Smith if (faceLoc >= 0) SETERRQ2(PetscObjectComm((PetscObject)dm), PETSC_ERR_PLIB, "Face %d has dimension %d in the surface label", face, faceLoc); 2266efa14ee0SMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2267efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2268efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2269efa14ee0SMatthew G Knepley PetscInt vertexLoc; 2270efa14ee0SMatthew G Knepley 2271efa14ee0SMatthew G Knepley if ((point >= pStart[0]) && (point < pEnd[0])) { 2272efa14ee0SMatthew G Knepley ierr = DMLabelGetValue(vertexLabel, point, &vertexLoc);CHKERRQ(ierr); 2273830e53efSMatthew G. Knepley if (vertexLoc != value) break; 2274efa14ee0SMatthew G Knepley } 2275efa14ee0SMatthew G Knepley } 2276efa14ee0SMatthew G Knepley if (c == closureSize*2) { 2277efa14ee0SMatthew G Knepley const PetscInt *support; 2278efa14ee0SMatthew G Knepley PetscInt supportSize, s; 2279efa14ee0SMatthew G Knepley 2280efa14ee0SMatthew G Knepley for (c = 0; c < closureSize*2; c += 2) { 2281efa14ee0SMatthew G Knepley const PetscInt point = closure[c]; 2282efa14ee0SMatthew G Knepley 2283efa14ee0SMatthew G Knepley for (d = 0; d < dim; ++d) { 2284efa14ee0SMatthew G Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 2285efa14ee0SMatthew G Knepley ierr = DMLabelSetValue(subpointMap, point, d);CHKERRQ(ierr); 2286efa14ee0SMatthew G Knepley break; 2287efa14ee0SMatthew G Knepley } 2288efa14ee0SMatthew G Knepley } 2289efa14ee0SMatthew G Knepley } 2290efa14ee0SMatthew G Knepley ierr = DMPlexGetSupportSize(dm, face, &supportSize);CHKERRQ(ierr); 2291efa14ee0SMatthew G Knepley ierr = DMPlexGetSupport(dm, face, &support);CHKERRQ(ierr); 2292efa14ee0SMatthew G Knepley for (s = 0; s < supportSize; ++s) { 2293efa14ee0SMatthew G Knepley ierr = DMLabelSetValue(subpointMap, support[s], dim);CHKERRQ(ierr); 2294efa14ee0SMatthew G Knepley } 2295efa14ee0SMatthew G Knepley } 2296efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, face, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2297efa14ee0SMatthew G Knepley } 2298efa14ee0SMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, vertex, PETSC_FALSE, &starSize, &star);CHKERRQ(ierr); 2299efa14ee0SMatthew G Knepley } 230034b4c39eSMatthew G. Knepley if (subvertexIS) {ierr = ISRestoreIndices(subvertexIS, &subvertices);CHKERRQ(ierr);} 2301efa14ee0SMatthew G Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 2302412e9a14SMatthew G. Knepley ierr = PetscFree2(pStart, pEnd);CHKERRQ(ierr); 2303efa14ee0SMatthew G Knepley PetscFunctionReturn(0); 2304efa14ee0SMatthew G Knepley } 2305efa14ee0SMatthew G Knepley 230627c04023SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char labelname[], PetscInt value, DMLabel subpointMap, PetscInt *numFaces, PetscInt *nFV, PetscInt *subCells[], DM subdm) 2307766ab985SMatthew G. Knepley { 230827c04023SMatthew G. Knepley DMLabel label = NULL; 2309766ab985SMatthew G. Knepley const PetscInt *cone; 23109fc93327SToby Isaac PetscInt dim, cMax, cEnd, c, subc = 0, p, coneSize = -1; 2311766ab985SMatthew G. Knepley PetscErrorCode ierr; 2312766ab985SMatthew G. Knepley 2313812bfc34SJed Brown PetscFunctionBegin; 2314c0ed958bSJed Brown *numFaces = 0; 2315c0ed958bSJed Brown *nFV = 0; 2316c58f1c22SToby Isaac if (labelname) {ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr);} 2317fed694aaSMatthew G. Knepley *subCells = NULL; 2318c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2319412e9a14SMatthew G. Knepley ierr = DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd);CHKERRQ(ierr); 2320766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 232127c04023SMatthew G. Knepley if (label) { 232227c04023SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 232327c04023SMatthew G. Knepley PetscInt val; 232427c04023SMatthew G. Knepley 232527c04023SMatthew G. Knepley ierr = DMLabelGetValue(label, c, &val);CHKERRQ(ierr); 232627c04023SMatthew G. Knepley if (val == value) { 232727c04023SMatthew G. Knepley ++(*numFaces); 232827c04023SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 232927c04023SMatthew G. Knepley } 233027c04023SMatthew G. Knepley } 233127c04023SMatthew G. Knepley } else { 2332766ab985SMatthew G. Knepley *numFaces = cEnd - cMax; 233327c04023SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cMax, &coneSize);CHKERRQ(ierr); 233427c04023SMatthew G. Knepley } 2335785e854fSJed Brown ierr = PetscMalloc1(*numFaces *2, subCells);CHKERRQ(ierr); 23369fc93327SToby Isaac if (!(*numFaces)) PetscFunctionReturn(0); 23379fc93327SToby Isaac *nFV = hasLagrange ? coneSize/3 : coneSize/2; 2338766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2339766ab985SMatthew G. Knepley const PetscInt *cells; 2340766ab985SMatthew G. Knepley PetscInt numCells; 2341766ab985SMatthew G. Knepley 234227c04023SMatthew G. Knepley if (label) { 234327c04023SMatthew G. Knepley PetscInt val; 234427c04023SMatthew G. Knepley 234527c04023SMatthew G. Knepley ierr = DMLabelGetValue(label, c, &val);CHKERRQ(ierr); 234627c04023SMatthew G. Knepley if (val != value) continue; 234727c04023SMatthew G. Knepley } 2348766ab985SMatthew G. Knepley ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 2349766ab985SMatthew G. Knepley for (p = 0; p < *nFV; ++p) { 2350766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, cone[p], 0);CHKERRQ(ierr); 2351766ab985SMatthew G. Knepley } 2352766ab985SMatthew G. Knepley /* Negative face */ 2353766ab985SMatthew G. Knepley ierr = DMPlexGetJoin(dm, *nFV, cone, &numCells, &cells);CHKERRQ(ierr); 235427234c99SMatthew G. Knepley /* Not true in parallel 235527234c99SMatthew G. Knepley if (numCells != 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 2356766ab985SMatthew G. Knepley for (p = 0; p < numCells; ++p) { 2357766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, cells[p], 2);CHKERRQ(ierr); 235827234c99SMatthew G. Knepley (*subCells)[subc++] = cells[p]; 2359766ab985SMatthew G. Knepley } 2360766ab985SMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, *nFV, cone, &numCells, &cells);CHKERRQ(ierr); 2361766ab985SMatthew G. Knepley /* Positive face is not included */ 2362766ab985SMatthew G. Knepley } 2363766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2364766ab985SMatthew G. Knepley } 2365766ab985SMatthew G. Knepley 23663982b651SMatthew G. Knepley static PetscErrorCode DMPlexMarkCohesiveSubmesh_Interpolated(DM dm, DMLabel label, PetscInt value, DMLabel subpointMap, DM subdm) 2367766ab985SMatthew G. Knepley { 2368766ab985SMatthew G. Knepley PetscInt *pStart, *pEnd; 2369766ab985SMatthew G. Knepley PetscInt dim, cMax, cEnd, c, d; 2370766ab985SMatthew G. Knepley PetscErrorCode ierr; 2371766ab985SMatthew G. Knepley 2372812bfc34SJed Brown PetscFunctionBegin; 2373c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 2374412e9a14SMatthew G. Knepley ierr = DMPlexGetTensorPrismBounds_Internal(dm, dim, &cMax, &cEnd);CHKERRQ(ierr); 2375766ab985SMatthew G. Knepley if (cMax < 0) PetscFunctionReturn(0); 2376dcca6d9dSJed Brown ierr = PetscMalloc2(dim+1,&pStart,dim+1,&pEnd);CHKERRQ(ierr); 2377b3154360SMatthew G. Knepley for (d = 0; d <= dim; ++d) {ierr = DMPlexGetDepthStratum(dm, d, &pStart[d], &pEnd[d]);CHKERRQ(ierr);} 2378766ab985SMatthew G. Knepley for (c = cMax; c < cEnd; ++c) { 2379766ab985SMatthew G. Knepley const PetscInt *cone; 2380766ab985SMatthew G. Knepley PetscInt *closure = NULL; 2381b3154360SMatthew G. Knepley PetscInt fconeSize, coneSize, closureSize, cl, val; 2382766ab985SMatthew G. Knepley 238327c04023SMatthew G. Knepley if (label) { 238427c04023SMatthew G. Knepley ierr = DMLabelGetValue(label, c, &val);CHKERRQ(ierr); 238527c04023SMatthew G. Knepley if (val != value) continue; 238627c04023SMatthew G. Knepley } 2387766ab985SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, c, &coneSize);CHKERRQ(ierr); 2388766ab985SMatthew G. Knepley ierr = DMPlexGetCone(dm, c, &cone);CHKERRQ(ierr); 2389b3154360SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cone[0], &fconeSize);CHKERRQ(ierr); 2390b3154360SMatthew G. Knepley if (coneSize != (fconeSize ? fconeSize : 1) + 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); 2391b3154360SMatthew G. Knepley /* Negative face */ 2392766ab985SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2393766ab985SMatthew G. Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2394766ab985SMatthew G. Knepley const PetscInt point = closure[cl]; 2395766ab985SMatthew G. Knepley 2396766ab985SMatthew G. Knepley for (d = 0; d <= dim; ++d) { 2397766ab985SMatthew G. Knepley if ((point >= pStart[d]) && (point < pEnd[d])) { 2398766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, point, d);CHKERRQ(ierr); 2399766ab985SMatthew G. Knepley break; 2400766ab985SMatthew G. Knepley } 2401766ab985SMatthew G. Knepley } 2402766ab985SMatthew G. Knepley } 2403766ab985SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, cone[0], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2404766ab985SMatthew G. Knepley /* Cells -- positive face is not included */ 2405766ab985SMatthew G. Knepley for (cl = 0; cl < 1; ++cl) { 2406766ab985SMatthew G. Knepley const PetscInt *support; 2407766ab985SMatthew G. Knepley PetscInt supportSize, s; 2408766ab985SMatthew G. Knepley 2409766ab985SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, cone[cl], &supportSize);CHKERRQ(ierr); 2410711de394SMatthew G. Knepley /* if (supportSize != 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive faces should separate two cells"); */ 2411766ab985SMatthew G. Knepley ierr = DMPlexGetSupport(dm, cone[cl], &support);CHKERRQ(ierr); 2412766ab985SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 2413766ab985SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, support[s], dim);CHKERRQ(ierr); 2414766ab985SMatthew G. Knepley } 2415766ab985SMatthew G. Knepley } 2416766ab985SMatthew G. Knepley } 2417766ab985SMatthew G. Knepley ierr = PetscFree2(pStart, pEnd);CHKERRQ(ierr); 2418766ab985SMatthew G. Knepley PetscFunctionReturn(0); 2419766ab985SMatthew G. Knepley } 2420766ab985SMatthew G. Knepley 2421c08575a3SMatthew G. Knepley static PetscErrorCode DMPlexGetFaceOrientation(DM dm, PetscInt cell, PetscInt numCorners, PetscInt indices[], PetscInt oppositeVertex, PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2422e6ccafaeSMatthew G Knepley { 242382f516ccSBarry Smith MPI_Comm comm; 2424e6ccafaeSMatthew G Knepley PetscBool posOrient = PETSC_FALSE; 2425e6ccafaeSMatthew G Knepley const PetscInt debug = 0; 2426e6ccafaeSMatthew G Knepley PetscInt cellDim, faceSize, f; 2427e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2428e6ccafaeSMatthew G Knepley 242982f516ccSBarry Smith PetscFunctionBegin; 243082f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 2431c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &cellDim);CHKERRQ(ierr); 2432367003a6SStefano Zampini if (debug) {ierr = PetscPrintf(comm, "cellDim: %d numCorners: %d\n", cellDim, numCorners);CHKERRQ(ierr);} 2433e6ccafaeSMatthew G Knepley 2434ddeab2a6SMatthew G. Knepley if (cellDim == 1 && numCorners == 2) { 2435ddeab2a6SMatthew G. Knepley /* Triangle */ 2436e6ccafaeSMatthew G Knepley faceSize = numCorners-1; 2437e6ccafaeSMatthew G Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2438ddeab2a6SMatthew G. Knepley } else if (cellDim == 2 && numCorners == 3) { 2439ddeab2a6SMatthew G. Knepley /* Triangle */ 2440ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2441ddeab2a6SMatthew G. Knepley posOrient = !(oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2442ddeab2a6SMatthew G. Knepley } else if (cellDim == 3 && numCorners == 4) { 2443ddeab2a6SMatthew G. Knepley /* Tetrahedron */ 2444ddeab2a6SMatthew G. Knepley faceSize = numCorners-1; 2445ddeab2a6SMatthew G. Knepley posOrient = (oppositeVertex%2) ? PETSC_TRUE : PETSC_FALSE; 2446e6ccafaeSMatthew G Knepley } else if (cellDim == 1 && numCorners == 3) { 2447e6ccafaeSMatthew G Knepley /* Quadratic line */ 2448e6ccafaeSMatthew G Knepley faceSize = 1; 2449e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2450e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 4) { 2451e6ccafaeSMatthew G Knepley /* Quads */ 2452e6ccafaeSMatthew G Knepley faceSize = 2; 2453e6ccafaeSMatthew G Knepley if ((indices[1] > indices[0]) && (indices[1] - indices[0] == 1)) { 2454e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2455e6ccafaeSMatthew G Knepley } else if ((indices[0] == 3) && (indices[1] == 0)) { 2456e6ccafaeSMatthew G Knepley posOrient = PETSC_TRUE; 2457e6ccafaeSMatthew G Knepley } else { 2458e6ccafaeSMatthew G Knepley if (((indices[0] > indices[1]) && (indices[0] - indices[1] == 1)) || ((indices[0] == 0) && (indices[1] == 3))) { 2459e6ccafaeSMatthew G Knepley posOrient = PETSC_FALSE; 2460e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossedge"); 2461e6ccafaeSMatthew G Knepley } 2462e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 6) { 2463e6ccafaeSMatthew G Knepley /* Quadratic triangle (I hate this) */ 2464e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2465e6ccafaeSMatthew G Knepley const PetscInt faceSizeTri = 3; 2466e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2467e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2468e6ccafaeSMatthew G Knepley PetscInt faceVerticesTriSorted[9] = { 2469e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2470e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2471e6ccafaeSMatthew G Knepley 2, 3, 5, /* left */ 2472e6ccafaeSMatthew G Knepley }; 2473e6ccafaeSMatthew G Knepley PetscInt faceVerticesTri[9] = { 2474e6ccafaeSMatthew G Knepley 0, 3, 4, /* bottom */ 2475e6ccafaeSMatthew G Knepley 1, 4, 5, /* right */ 2476e6ccafaeSMatthew G Knepley 2, 5, 3, /* left */ 2477e6ccafaeSMatthew G Knepley }; 2478e6ccafaeSMatthew G Knepley 2479e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTri; ++i) sortedIndices[i] = indices[i]; 2480e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeTri, sortedIndices);CHKERRQ(ierr); 2481e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 3; ++iFace) { 2482e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTri; 2483e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2484e6ccafaeSMatthew G Knepley 2485e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTriSorted[ii+0]) && 2486e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTriSorted[ii+1])) { 2487e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTri; ++fVertex) { 2488e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTri; ++cVertex) { 2489e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTri[ii+fVertex]) { 2490e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2491e6ccafaeSMatthew G Knepley break; 2492e6ccafaeSMatthew G Knepley } 2493e6ccafaeSMatthew G Knepley } 2494e6ccafaeSMatthew G Knepley } 2495e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2496e6ccafaeSMatthew G Knepley break; 2497e6ccafaeSMatthew G Knepley } 2498e6ccafaeSMatthew G Knepley } 2499e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid tri crossface"); 2500e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2501e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2502e6ccafaeSMatthew G Knepley } else if (cellDim == 2 && numCorners == 9) { 2503e6ccafaeSMatthew G Knepley /* Quadratic quad (I hate this) */ 2504e6ccafaeSMatthew G Knepley /* Edges are determined by the first 2 vertices (corners of edges) */ 2505e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuad = 3; 2506e6ccafaeSMatthew G Knepley PetscInt sortedIndices[3], i, iFace; 2507e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2508e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadSorted[12] = { 2509e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2510e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2511e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2512e6ccafaeSMatthew G Knepley 0, 3, 7, /* left */ 2513e6ccafaeSMatthew G Knepley }; 2514e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuad[12] = { 2515e6ccafaeSMatthew G Knepley 0, 1, 4, /* bottom */ 2516e6ccafaeSMatthew G Knepley 1, 2, 5, /* right */ 2517e6ccafaeSMatthew G Knepley 2, 3, 6, /* top */ 2518e6ccafaeSMatthew G Knepley 3, 0, 7, /* left */ 2519e6ccafaeSMatthew G Knepley }; 2520e6ccafaeSMatthew G Knepley 2521e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuad; ++i) sortedIndices[i] = indices[i]; 2522e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeQuad, sortedIndices);CHKERRQ(ierr); 2523e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 4; ++iFace) { 2524e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuad; 2525e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2526e6ccafaeSMatthew G Knepley 2527e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadSorted[ii+0]) && 2528e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadSorted[ii+1])) { 2529e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuad; ++fVertex) { 2530e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuad; ++cVertex) { 2531e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuad[ii+fVertex]) { 2532e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2533e6ccafaeSMatthew G Knepley break; 2534e6ccafaeSMatthew G Knepley } 2535e6ccafaeSMatthew G Knepley } 2536e6ccafaeSMatthew G Knepley } 2537e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2538e6ccafaeSMatthew G Knepley break; 2539e6ccafaeSMatthew G Knepley } 2540e6ccafaeSMatthew G Knepley } 2541e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid quad crossface"); 2542e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2543e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2544e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 8) { 2545e6ccafaeSMatthew G Knepley /* Hexes 2546e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2547e6ccafaeSMatthew G Knepley pointing up at the second. 2548e6ccafaeSMatthew G Knepley 2549e6ccafaeSMatthew G Knepley 7---6 2550e6ccafaeSMatthew G Knepley /| /| 2551e6ccafaeSMatthew G Knepley 4---5 | 2552ddeab2a6SMatthew G. Knepley | 1-|-2 2553e6ccafaeSMatthew G Knepley |/ |/ 2554ddeab2a6SMatthew G. Knepley 0---3 2555e6ccafaeSMatthew G Knepley 2556e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2557e6ccafaeSMatthew G Knepley const PetscInt faceSizeHex = 4; 2558e6ccafaeSMatthew G Knepley PetscInt sortedIndices[4], i, iFace; 2559e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2560e6ccafaeSMatthew G Knepley PetscInt faceVerticesHexSorted[24] = { 2561e6ccafaeSMatthew G Knepley 0, 1, 2, 3, /* bottom */ 2562e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2563ddeab2a6SMatthew G. Knepley 0, 3, 4, 5, /* front */ 2564ddeab2a6SMatthew G. Knepley 2, 3, 5, 6, /* right */ 2565ddeab2a6SMatthew G. Knepley 1, 2, 6, 7, /* back */ 2566ddeab2a6SMatthew G. Knepley 0, 1, 4, 7, /* left */ 2567e6ccafaeSMatthew G Knepley }; 2568e6ccafaeSMatthew G Knepley PetscInt faceVerticesHex[24] = { 2569ddeab2a6SMatthew G. Knepley 1, 2, 3, 0, /* bottom */ 2570e6ccafaeSMatthew G Knepley 4, 5, 6, 7, /* top */ 2571ddeab2a6SMatthew G. Knepley 0, 3, 5, 4, /* front */ 2572ddeab2a6SMatthew G. Knepley 3, 2, 6, 5, /* right */ 2573ddeab2a6SMatthew G. Knepley 2, 1, 7, 6, /* back */ 2574ddeab2a6SMatthew G. Knepley 1, 0, 4, 7, /* left */ 2575e6ccafaeSMatthew G Knepley }; 2576e6ccafaeSMatthew G Knepley 2577e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeHex; ++i) sortedIndices[i] = indices[i]; 2578e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeHex, sortedIndices);CHKERRQ(ierr); 2579e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2580e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeHex; 2581e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2582e6ccafaeSMatthew G Knepley 2583e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesHexSorted[ii+0]) && 2584e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesHexSorted[ii+1]) && 2585e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesHexSorted[ii+2]) && 2586e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesHexSorted[ii+3])) { 2587e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeHex; ++fVertex) { 2588e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeHex; ++cVertex) { 2589e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesHex[ii+fVertex]) { 2590e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2591e6ccafaeSMatthew G Knepley break; 2592e6ccafaeSMatthew G Knepley } 2593e6ccafaeSMatthew G Knepley } 2594e6ccafaeSMatthew G Knepley } 2595e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2596e6ccafaeSMatthew G Knepley break; 2597e6ccafaeSMatthew G Knepley } 2598e6ccafaeSMatthew G Knepley } 2599e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2600e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2601e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2602e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 10) { 2603e6ccafaeSMatthew G Knepley /* Quadratic tet */ 2604e6ccafaeSMatthew G Knepley /* Faces are determined by the first 3 vertices (corners of faces) */ 2605e6ccafaeSMatthew G Knepley const PetscInt faceSizeTet = 6; 2606e6ccafaeSMatthew G Knepley PetscInt sortedIndices[6], i, iFace; 2607e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2608e6ccafaeSMatthew G Knepley PetscInt faceVerticesTetSorted[24] = { 2609e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2610e6ccafaeSMatthew G Knepley 0, 3, 4, 6, 7, 9, /* front */ 2611e6ccafaeSMatthew G Knepley 1, 4, 5, 7, 8, 9, /* right */ 2612e6ccafaeSMatthew G Knepley 2, 3, 5, 6, 8, 9, /* left */ 2613e6ccafaeSMatthew G Knepley }; 2614e6ccafaeSMatthew G Knepley PetscInt faceVerticesTet[24] = { 2615e6ccafaeSMatthew G Knepley 0, 1, 2, 6, 7, 8, /* bottom */ 2616e6ccafaeSMatthew G Knepley 0, 4, 3, 6, 7, 9, /* front */ 2617e6ccafaeSMatthew G Knepley 1, 5, 4, 7, 8, 9, /* right */ 2618e6ccafaeSMatthew G Knepley 2, 3, 5, 8, 6, 9, /* left */ 2619e6ccafaeSMatthew G Knepley }; 2620e6ccafaeSMatthew G Knepley 2621e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeTet; ++i) sortedIndices[i] = indices[i]; 2622e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeTet, sortedIndices);CHKERRQ(ierr); 2623e6ccafaeSMatthew G Knepley for (iFace=0; iFace < 4; ++iFace) { 2624e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeTet; 2625e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2626e6ccafaeSMatthew G Knepley 2627e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesTetSorted[ii+0]) && 2628e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesTetSorted[ii+1]) && 2629e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesTetSorted[ii+2]) && 2630e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesTetSorted[ii+3])) { 2631e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeTet; ++fVertex) { 2632e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeTet; ++cVertex) { 2633e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesTet[ii+fVertex]) { 2634e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2635e6ccafaeSMatthew G Knepley break; 2636e6ccafaeSMatthew G Knepley } 2637e6ccafaeSMatthew G Knepley } 2638e6ccafaeSMatthew G Knepley } 2639e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2640e6ccafaeSMatthew G Knepley break; 2641e6ccafaeSMatthew G Knepley } 2642e6ccafaeSMatthew G Knepley } 2643e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid tet crossface"); 2644e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2645e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2646e6ccafaeSMatthew G Knepley } else if (cellDim == 3 && numCorners == 27) { 2647e6ccafaeSMatthew G Knepley /* Quadratic hexes (I hate this) 2648e6ccafaeSMatthew G Knepley A hex is two oriented quads with the normal of the first 2649e6ccafaeSMatthew G Knepley pointing up at the second. 2650e6ccafaeSMatthew G Knepley 2651e6ccafaeSMatthew G Knepley 7---6 2652e6ccafaeSMatthew G Knepley /| /| 2653e6ccafaeSMatthew G Knepley 4---5 | 2654e6ccafaeSMatthew G Knepley | 3-|-2 2655e6ccafaeSMatthew G Knepley |/ |/ 2656e6ccafaeSMatthew G Knepley 0---1 2657e6ccafaeSMatthew G Knepley 2658e6ccafaeSMatthew G Knepley Faces are determined by the first 4 vertices (corners of faces) */ 2659e6ccafaeSMatthew G Knepley const PetscInt faceSizeQuadHex = 9; 2660e6ccafaeSMatthew G Knepley PetscInt sortedIndices[9], i, iFace; 2661e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2662e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHexSorted[54] = { 2663e6ccafaeSMatthew G Knepley 0, 1, 2, 3, 8, 9, 10, 11, 24, /* bottom */ 2664e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2665e6ccafaeSMatthew G Knepley 0, 1, 4, 5, 8, 12, 16, 17, 22, /* front */ 2666e6ccafaeSMatthew G Knepley 1, 2, 5, 6, 9, 13, 17, 18, 21, /* right */ 2667e6ccafaeSMatthew G Knepley 2, 3, 6, 7, 10, 14, 18, 19, 23, /* back */ 2668e6ccafaeSMatthew G Knepley 0, 3, 4, 7, 11, 15, 16, 19, 20, /* left */ 2669e6ccafaeSMatthew G Knepley }; 2670e6ccafaeSMatthew G Knepley PetscInt faceVerticesQuadHex[54] = { 2671e6ccafaeSMatthew G Knepley 3, 2, 1, 0, 10, 9, 8, 11, 24, /* bottom */ 2672e6ccafaeSMatthew G Knepley 4, 5, 6, 7, 12, 13, 14, 15, 25, /* top */ 2673e6ccafaeSMatthew G Knepley 0, 1, 5, 4, 8, 17, 12, 16, 22, /* front */ 2674e6ccafaeSMatthew G Knepley 1, 2, 6, 5, 9, 18, 13, 17, 21, /* right */ 2675e6ccafaeSMatthew G Knepley 2, 3, 7, 6, 10, 19, 14, 18, 23, /* back */ 2676e6ccafaeSMatthew G Knepley 3, 0, 4, 7, 11, 16, 15, 19, 20 /* left */ 2677e6ccafaeSMatthew G Knepley }; 2678e6ccafaeSMatthew G Knepley 2679e6ccafaeSMatthew G Knepley for (i = 0; i < faceSizeQuadHex; ++i) sortedIndices[i] = indices[i]; 2680e6ccafaeSMatthew G Knepley ierr = PetscSortInt(faceSizeQuadHex, sortedIndices);CHKERRQ(ierr); 2681e6ccafaeSMatthew G Knepley for (iFace = 0; iFace < 6; ++iFace) { 2682e6ccafaeSMatthew G Knepley const PetscInt ii = iFace*faceSizeQuadHex; 2683e6ccafaeSMatthew G Knepley PetscInt fVertex, cVertex; 2684e6ccafaeSMatthew G Knepley 2685e6ccafaeSMatthew G Knepley if ((sortedIndices[0] == faceVerticesQuadHexSorted[ii+0]) && 2686e6ccafaeSMatthew G Knepley (sortedIndices[1] == faceVerticesQuadHexSorted[ii+1]) && 2687e6ccafaeSMatthew G Knepley (sortedIndices[2] == faceVerticesQuadHexSorted[ii+2]) && 2688e6ccafaeSMatthew G Knepley (sortedIndices[3] == faceVerticesQuadHexSorted[ii+3])) { 2689e6ccafaeSMatthew G Knepley for (fVertex = 0; fVertex < faceSizeQuadHex; ++fVertex) { 2690e6ccafaeSMatthew G Knepley for (cVertex = 0; cVertex < faceSizeQuadHex; ++cVertex) { 2691e6ccafaeSMatthew G Knepley if (indices[cVertex] == faceVerticesQuadHex[ii+fVertex]) { 2692e6ccafaeSMatthew G Knepley faceVertices[fVertex] = origVertices[cVertex]; 2693e6ccafaeSMatthew G Knepley break; 2694e6ccafaeSMatthew G Knepley } 2695e6ccafaeSMatthew G Knepley } 2696e6ccafaeSMatthew G Knepley } 2697e6ccafaeSMatthew G Knepley found = PETSC_TRUE; 2698e6ccafaeSMatthew G Knepley break; 2699e6ccafaeSMatthew G Knepley } 2700e6ccafaeSMatthew G Knepley } 2701e6ccafaeSMatthew G Knepley if (!found) SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid hex crossface"); 2702e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = PETSC_TRUE; 2703e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2704e6ccafaeSMatthew G Knepley } else SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Unknown cell type for faceOrientation()."); 2705e6ccafaeSMatthew G Knepley if (!posOrient) { 2706e6ccafaeSMatthew G Knepley if (debug) {ierr = PetscPrintf(comm, " Reversing initial face orientation\n");CHKERRQ(ierr);} 2707e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[faceSize-1 - f]; 2708e6ccafaeSMatthew G Knepley } else { 2709e6ccafaeSMatthew G Knepley if (debug) {ierr = PetscPrintf(comm, " Keeping initial face orientation\n");CHKERRQ(ierr);} 2710e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) faceVertices[f] = origVertices[f]; 2711e6ccafaeSMatthew G Knepley } 2712e6ccafaeSMatthew G Knepley if (posOriented) *posOriented = posOrient; 2713e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2714e6ccafaeSMatthew G Knepley } 2715e6ccafaeSMatthew G Knepley 2716c08575a3SMatthew G. Knepley /*@ 2717c08575a3SMatthew G. Knepley DMPlexGetOrientedFace - Given a cell and a face, as a set of vertices, return the oriented face, as a set of vertices, 2718c08575a3SMatthew G. Knepley in faceVertices. The orientation is such that the face normal points out of the cell 2719c08575a3SMatthew G. Knepley 2720c08575a3SMatthew G. Knepley Not collective 2721c08575a3SMatthew G. Knepley 2722c08575a3SMatthew G. Knepley Input Parameters: 2723c08575a3SMatthew G. Knepley + dm - The original mesh 2724c08575a3SMatthew G. Knepley . cell - The cell mesh point 2725c08575a3SMatthew G. Knepley . faceSize - The number of vertices on the face 2726c08575a3SMatthew G. Knepley . face - The face vertices 2727c08575a3SMatthew G. Knepley . numCorners - The number of vertices on the cell 2728c08575a3SMatthew G. Knepley . indices - Local numbering of face vertices in cell cone 2729c08575a3SMatthew G. Knepley - origVertices - Original face vertices 2730c08575a3SMatthew G. Knepley 2731c08575a3SMatthew G. Knepley Output Parameter: 2732c08575a3SMatthew G. Knepley + faceVertices - The face vertices properly oriented 2733c08575a3SMatthew G. Knepley - posOriented - PETSC_TRUE if the face was oriented with outward normal 2734c08575a3SMatthew G. Knepley 2735c08575a3SMatthew G. Knepley Level: developer 2736c08575a3SMatthew G. Knepley 2737c08575a3SMatthew G. Knepley .seealso: DMPlexGetCone() 2738c08575a3SMatthew G. Knepley @*/ 2739e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetOrientedFace(DM dm, PetscInt cell, PetscInt faceSize, const PetscInt face[], PetscInt numCorners, PetscInt indices[], PetscInt origVertices[], PetscInt faceVertices[], PetscBool *posOriented) 2740e6ccafaeSMatthew G Knepley { 27410298fd71SBarry Smith const PetscInt *cone = NULL; 2742e6ccafaeSMatthew G Knepley PetscInt coneSize, v, f, v2; 2743e6ccafaeSMatthew G Knepley PetscInt oppositeVertex = -1; 2744e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2745e6ccafaeSMatthew G Knepley 2746e6ccafaeSMatthew G Knepley PetscFunctionBegin; 2747e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(dm, cell, &coneSize);CHKERRQ(ierr); 2748e6ccafaeSMatthew G Knepley ierr = DMPlexGetCone(dm, cell, &cone);CHKERRQ(ierr); 2749e6ccafaeSMatthew G Knepley for (v = 0, v2 = 0; v < coneSize; ++v) { 2750e6ccafaeSMatthew G Knepley PetscBool found = PETSC_FALSE; 2751e6ccafaeSMatthew G Knepley 2752e6ccafaeSMatthew G Knepley for (f = 0; f < faceSize; ++f) { 2753e6ccafaeSMatthew G Knepley if (face[f] == cone[v]) { 2754e6ccafaeSMatthew G Knepley found = PETSC_TRUE; break; 2755e6ccafaeSMatthew G Knepley } 2756e6ccafaeSMatthew G Knepley } 2757e6ccafaeSMatthew G Knepley if (found) { 2758e6ccafaeSMatthew G Knepley indices[v2] = v; 2759e6ccafaeSMatthew G Knepley origVertices[v2] = cone[v]; 2760e6ccafaeSMatthew G Knepley ++v2; 2761e6ccafaeSMatthew G Knepley } else { 2762e6ccafaeSMatthew G Knepley oppositeVertex = v; 2763e6ccafaeSMatthew G Knepley } 2764e6ccafaeSMatthew G Knepley } 2765e6ccafaeSMatthew G Knepley ierr = DMPlexGetFaceOrientation(dm, cell, numCorners, indices, oppositeVertex, origVertices, faceVertices, posOriented);CHKERRQ(ierr); 2766e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2767e6ccafaeSMatthew G Knepley } 2768e6ccafaeSMatthew G Knepley 2769e6ccafaeSMatthew G Knepley /* 2770cd0c2139SMatthew G Knepley DMPlexInsertFace_Internal - Puts a face into the mesh 2771e6ccafaeSMatthew G Knepley 2772e6ccafaeSMatthew G Knepley Not collective 2773e6ccafaeSMatthew G Knepley 2774e6ccafaeSMatthew G Knepley Input Parameters: 2775e6ccafaeSMatthew G Knepley + dm - The DMPlex 2776e6ccafaeSMatthew G Knepley . numFaceVertex - The number of vertices in the face 2777e6ccafaeSMatthew G Knepley . faceVertices - The vertices in the face for dm 2778e6ccafaeSMatthew G Knepley . subfaceVertices - The vertices in the face for subdm 2779e6ccafaeSMatthew G Knepley . numCorners - The number of vertices in the cell 2780e6ccafaeSMatthew G Knepley . cell - A cell in dm containing the face 2781e6ccafaeSMatthew G Knepley . subcell - A cell in subdm containing the face 2782e6ccafaeSMatthew G Knepley . firstFace - First face in the mesh 2783e6ccafaeSMatthew G Knepley - newFacePoint - Next face in the mesh 2784e6ccafaeSMatthew G Knepley 2785e6ccafaeSMatthew G Knepley Output Parameters: 2786e6ccafaeSMatthew G Knepley . newFacePoint - Contains next face point number on input, updated on output 2787e6ccafaeSMatthew G Knepley 2788e6ccafaeSMatthew G Knepley Level: developer 2789e6ccafaeSMatthew G Knepley */ 2790cd0c2139SMatthew G Knepley static PetscErrorCode DMPlexInsertFace_Internal(DM dm, DM subdm, PetscInt numFaceVertices, const PetscInt faceVertices[], const PetscInt subfaceVertices[], PetscInt numCorners, PetscInt cell, PetscInt subcell, PetscInt firstFace, PetscInt *newFacePoint) 2791e6ccafaeSMatthew G Knepley { 279282f516ccSBarry Smith MPI_Comm comm; 2793e6ccafaeSMatthew G Knepley DM_Plex *submesh = (DM_Plex*) subdm->data; 2794e6ccafaeSMatthew G Knepley const PetscInt *faces; 2795e6ccafaeSMatthew G Knepley PetscInt numFaces, coneSize; 2796e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2797e6ccafaeSMatthew G Knepley 2798e6ccafaeSMatthew G Knepley PetscFunctionBegin; 279982f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 2800e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(subdm, subcell, &coneSize);CHKERRQ(ierr); 2801e6ccafaeSMatthew G Knepley if (coneSize != 1) SETERRQ2(comm, PETSC_ERR_ARG_OUTOFRANGE, "Cone size of cell %d is %d != 1", cell, coneSize); 2802e6ccafaeSMatthew G Knepley #if 0 2803e6ccafaeSMatthew G Knepley /* Cannot use this because support() has not been constructed yet */ 2804e6ccafaeSMatthew G Knepley ierr = DMPlexGetJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces);CHKERRQ(ierr); 2805e6ccafaeSMatthew G Knepley #else 2806e6ccafaeSMatthew G Knepley { 2807e6ccafaeSMatthew G Knepley PetscInt f; 2808e6ccafaeSMatthew G Knepley 2809e6ccafaeSMatthew G Knepley numFaces = 0; 281069291d52SBarry Smith ierr = DMGetWorkArray(subdm, 1, MPIU_INT, (void **) &faces);CHKERRQ(ierr); 2811e6ccafaeSMatthew G Knepley for (f = firstFace; f < *newFacePoint; ++f) { 2812e6ccafaeSMatthew G Knepley PetscInt dof, off, d; 2813e6ccafaeSMatthew G Knepley 2814e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(submesh->coneSection, f, &dof);CHKERRQ(ierr); 2815e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(submesh->coneSection, f, &off);CHKERRQ(ierr); 2816e6ccafaeSMatthew G Knepley /* Yes, I know this is quadratic, but I expect the sizes to be <5 */ 2817e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) { 2818e6ccafaeSMatthew G Knepley const PetscInt p = submesh->cones[off+d]; 2819e6ccafaeSMatthew G Knepley PetscInt v; 2820e6ccafaeSMatthew G Knepley 2821e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2822e6ccafaeSMatthew G Knepley if (subfaceVertices[v] == p) break; 2823e6ccafaeSMatthew G Knepley } 2824e6ccafaeSMatthew G Knepley if (v == numFaceVertices) break; 2825e6ccafaeSMatthew G Knepley } 2826e6ccafaeSMatthew G Knepley if (d == dof) { 2827e6ccafaeSMatthew G Knepley numFaces = 1; 2828e6ccafaeSMatthew G Knepley ((PetscInt*) faces)[0] = f; 2829e6ccafaeSMatthew G Knepley } 2830e6ccafaeSMatthew G Knepley } 2831e6ccafaeSMatthew G Knepley } 2832e6ccafaeSMatthew G Knepley #endif 2833e6ccafaeSMatthew G Knepley if (numFaces > 1) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Vertex set had %d faces, not one", numFaces); 2834e6ccafaeSMatthew G Knepley else if (numFaces == 1) { 2835e6ccafaeSMatthew G Knepley /* Add the other cell neighbor for this face */ 2836766ab985SMatthew G. Knepley ierr = DMPlexSetCone(subdm, subcell, faces);CHKERRQ(ierr); 2837e6ccafaeSMatthew G Knepley } else { 2838e6ccafaeSMatthew G Knepley PetscInt *indices, *origVertices, *orientedVertices, *orientedSubVertices, v, ov; 2839e6ccafaeSMatthew G Knepley PetscBool posOriented; 2840e6ccafaeSMatthew G Knepley 284169291d52SBarry Smith ierr = DMGetWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices);CHKERRQ(ierr); 2842e6ccafaeSMatthew G Knepley origVertices = &orientedVertices[numFaceVertices]; 2843e6ccafaeSMatthew G Knepley indices = &orientedVertices[numFaceVertices*2]; 2844e6ccafaeSMatthew G Knepley orientedSubVertices = &orientedVertices[numFaceVertices*3]; 2845e6ccafaeSMatthew G Knepley ierr = DMPlexGetOrientedFace(dm, cell, numFaceVertices, faceVertices, numCorners, indices, origVertices, orientedVertices, &posOriented);CHKERRQ(ierr); 2846e6ccafaeSMatthew G Knepley /* TODO: I know that routine should return a permutation, not the indices */ 2847e6ccafaeSMatthew G Knepley for (v = 0; v < numFaceVertices; ++v) { 2848e6ccafaeSMatthew G Knepley const PetscInt vertex = faceVertices[v], subvertex = subfaceVertices[v]; 2849e6ccafaeSMatthew G Knepley for (ov = 0; ov < numFaceVertices; ++ov) { 2850e6ccafaeSMatthew G Knepley if (orientedVertices[ov] == vertex) { 2851e6ccafaeSMatthew G Knepley orientedSubVertices[ov] = subvertex; 2852e6ccafaeSMatthew G Knepley break; 2853e6ccafaeSMatthew G Knepley } 2854e6ccafaeSMatthew G Knepley } 2855e6ccafaeSMatthew G Knepley if (ov == numFaceVertices) SETERRQ1(comm, PETSC_ERR_PLIB, "Could not find face vertex %d in orientated set", vertex); 2856e6ccafaeSMatthew G Knepley } 2857e6ccafaeSMatthew G Knepley ierr = DMPlexSetCone(subdm, *newFacePoint, orientedSubVertices);CHKERRQ(ierr); 2858e6ccafaeSMatthew G Knepley ierr = DMPlexSetCone(subdm, subcell, newFacePoint);CHKERRQ(ierr); 285969291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, 4*numFaceVertices * sizeof(PetscInt), MPIU_INT, &orientedVertices);CHKERRQ(ierr); 2860e6ccafaeSMatthew G Knepley ++(*newFacePoint); 2861e6ccafaeSMatthew G Knepley } 2862ef07cca7SMatthew G. Knepley #if 0 2863e6ccafaeSMatthew G Knepley ierr = DMPlexRestoreJoin(subdm, numFaceVertices, subfaceVertices, &numFaces, &faces);CHKERRQ(ierr); 2864ef07cca7SMatthew G. Knepley #else 286569291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, 1, MPIU_INT, (void **) &faces);CHKERRQ(ierr); 2866ef07cca7SMatthew G. Knepley #endif 2867e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 2868e6ccafaeSMatthew G Knepley } 2869e6ccafaeSMatthew G Knepley 287053156dfcSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Uninterpolated(DM dm, DMLabel vertexLabel, PetscInt value, DM subdm) 2871e6ccafaeSMatthew G Knepley { 287282f516ccSBarry Smith MPI_Comm comm; 287353156dfcSMatthew G. Knepley DMLabel subpointMap; 2874efa14ee0SMatthew G Knepley IS subvertexIS, subcellIS; 2875efa14ee0SMatthew G Knepley const PetscInt *subVertices, *subCells; 2876efa14ee0SMatthew G Knepley PetscInt numSubVertices, firstSubVertex, numSubCells; 2877fed694aaSMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces = 0, firstSubFace, newFacePoint, nFV = 0; 2878efa14ee0SMatthew G Knepley PetscInt vStart, vEnd, c, f; 2879e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 2880e6ccafaeSMatthew G Knepley 2881e6ccafaeSMatthew G Knepley PetscFunctionBegin; 288282f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 2883efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 2884d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap);CHKERRQ(ierr); 2885efa14ee0SMatthew G Knepley ierr = DMPlexSetSubpointMap(subdm, subpointMap);CHKERRQ(ierr); 2886efa14ee0SMatthew G Knepley ierr = DMLabelDestroy(&subpointMap);CHKERRQ(ierr); 288753156dfcSMatthew G. Knepley if (vertexLabel) {ierr = DMPlexMarkSubmesh_Uninterpolated(dm, vertexLabel, value, subpointMap, &numSubFaces, &nFV, subdm);CHKERRQ(ierr);} 2888efa14ee0SMatthew G Knepley /* Setup chart */ 2889efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumSize(subpointMap, 0, &numSubVertices);CHKERRQ(ierr); 2890efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumSize(subpointMap, 2, &numSubCells);CHKERRQ(ierr); 2891efa14ee0SMatthew G Knepley ierr = DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices);CHKERRQ(ierr); 2892efa14ee0SMatthew G Knepley ierr = DMPlexSetVTKCellHeight(subdm, 1);CHKERRQ(ierr); 2893e6ccafaeSMatthew G Knepley /* Set cone sizes */ 2894e6ccafaeSMatthew G Knepley firstSubVertex = numSubCells; 2895efa14ee0SMatthew G Knepley firstSubFace = numSubCells+numSubVertices; 2896e6ccafaeSMatthew G Knepley newFacePoint = firstSubFace; 2897efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumIS(subpointMap, 0, &subvertexIS);CHKERRQ(ierr); 2898efa14ee0SMatthew G Knepley if (subvertexIS) {ierr = ISGetIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 2899efa14ee0SMatthew G Knepley ierr = DMLabelGetStratumIS(subpointMap, 2, &subcellIS);CHKERRQ(ierr); 2900efa14ee0SMatthew G Knepley if (subcellIS) {ierr = ISGetIndices(subcellIS, &subCells);CHKERRQ(ierr);} 2901e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 2902e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, c, 1);CHKERRQ(ierr); 2903e6ccafaeSMatthew G Knepley } 2904e6ccafaeSMatthew G Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 2905e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, f, nFV);CHKERRQ(ierr); 2906e6ccafaeSMatthew G Knepley } 2907e6ccafaeSMatthew G Knepley ierr = DMSetUp(subdm);CHKERRQ(ierr); 2908e6ccafaeSMatthew G Knepley /* Create face cones */ 2909efa14ee0SMatthew G Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 29100298fd71SBarry Smith ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 291169291d52SBarry Smith ierr = DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 2912e6ccafaeSMatthew G Knepley for (c = 0; c < numSubCells; ++c) { 2913e6ccafaeSMatthew G Knepley const PetscInt cell = subCells[c]; 2914efa14ee0SMatthew G Knepley const PetscInt subcell = c; 29150298fd71SBarry Smith PetscInt *closure = NULL; 2916efa14ee0SMatthew G Knepley PetscInt closureSize, cl, numCorners = 0, faceSize = 0; 2917e6ccafaeSMatthew G Knepley 2918e6ccafaeSMatthew G Knepley ierr = DMPlexGetTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2919efa14ee0SMatthew G Knepley for (cl = 0; cl < closureSize*2; cl += 2) { 2920efa14ee0SMatthew G Knepley const PetscInt point = closure[cl]; 2921e6ccafaeSMatthew G Knepley PetscInt subVertex; 2922e6ccafaeSMatthew G Knepley 2923efa14ee0SMatthew G Knepley if ((point >= vStart) && (point < vEnd)) { 2924efa14ee0SMatthew G Knepley ++numCorners; 2925efa14ee0SMatthew G Knepley ierr = PetscFindInt(point, numSubVertices, subVertices, &subVertex);CHKERRQ(ierr); 2926efa14ee0SMatthew G Knepley if (subVertex >= 0) { 2927efa14ee0SMatthew G Knepley closure[faceSize] = point; 292865560c7fSMatthew G Knepley subface[faceSize] = firstSubVertex+subVertex; 2929e6ccafaeSMatthew G Knepley ++faceSize; 2930e6ccafaeSMatthew G Knepley } 2931e6ccafaeSMatthew G Knepley } 2932e6ccafaeSMatthew G Knepley } 2933efa14ee0SMatthew G Knepley if (faceSize > nFV) SETERRQ1(comm, PETSC_ERR_ARG_WRONG, "Invalid submesh: Too many vertices %d of an element on the surface", faceSize); 2934efa14ee0SMatthew G Knepley if (faceSize == nFV) { 2935cd0c2139SMatthew G Knepley ierr = DMPlexInsertFace_Internal(dm, subdm, faceSize, closure, subface, numCorners, cell, subcell, firstSubFace, &newFacePoint);CHKERRQ(ierr); 2936e6ccafaeSMatthew G Knepley } 293765560c7fSMatthew G Knepley ierr = DMPlexRestoreTransitiveClosure(dm, cell, PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 2938e6ccafaeSMatthew G Knepley } 293969291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 2940e6ccafaeSMatthew G Knepley ierr = DMPlexSymmetrize(subdm);CHKERRQ(ierr); 2941e6ccafaeSMatthew G Knepley ierr = DMPlexStratify(subdm);CHKERRQ(ierr); 2942e6ccafaeSMatthew G Knepley /* Build coordinates */ 2943efa14ee0SMatthew G Knepley { 2944efa14ee0SMatthew G Knepley PetscSection coordSection, subCoordSection; 2945efa14ee0SMatthew G Knepley Vec coordinates, subCoordinates; 2946efa14ee0SMatthew G Knepley PetscScalar *coords, *subCoords; 2947285d324eSMatthew G. Knepley PetscInt numComp, coordSize, v; 294824640c55SToby Isaac const char *name; 2949efa14ee0SMatthew G Knepley 295069d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 2951e6ccafaeSMatthew G Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 295269d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(subdm, &subCoordSection);CHKERRQ(ierr); 2953285d324eSMatthew G. Knepley ierr = PetscSectionSetNumFields(subCoordSection, 1);CHKERRQ(ierr); 2954285d324eSMatthew G. Knepley ierr = PetscSectionGetFieldComponents(coordSection, 0, &numComp);CHKERRQ(ierr); 2955285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldComponents(subCoordSection, 0, numComp);CHKERRQ(ierr); 2956efa14ee0SMatthew G Knepley ierr = PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices);CHKERRQ(ierr); 2957efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 2958efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 2959efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 2960efa14ee0SMatthew G Knepley PetscInt dof; 2961efa14ee0SMatthew G Knepley 2962efa14ee0SMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 2963efa14ee0SMatthew G Knepley ierr = PetscSectionSetDof(subCoordSection, subvertex, dof);CHKERRQ(ierr); 2964285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof);CHKERRQ(ierr); 2965e6ccafaeSMatthew G Knepley } 2966e6ccafaeSMatthew G Knepley ierr = PetscSectionSetUp(subCoordSection);CHKERRQ(ierr); 2967e6ccafaeSMatthew G Knepley ierr = PetscSectionGetStorageSize(subCoordSection, &coordSize);CHKERRQ(ierr); 29688b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &subCoordinates);CHKERRQ(ierr); 296924640c55SToby Isaac ierr = PetscObjectGetName((PetscObject)coordinates,&name);CHKERRQ(ierr); 297024640c55SToby Isaac ierr = PetscObjectSetName((PetscObject)subCoordinates,name);CHKERRQ(ierr); 2971e6ccafaeSMatthew G Knepley ierr = VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 29722eb5907fSJed Brown ierr = VecSetType(subCoordinates,VECSTANDARD);CHKERRQ(ierr); 2973830e53efSMatthew G. Knepley if (coordSize) { 2974e6ccafaeSMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 2975e6ccafaeSMatthew G Knepley ierr = VecGetArray(subCoordinates, &subCoords);CHKERRQ(ierr); 2976efa14ee0SMatthew G Knepley for (v = 0; v < numSubVertices; ++v) { 2977efa14ee0SMatthew G Knepley const PetscInt vertex = subVertices[v]; 2978efa14ee0SMatthew G Knepley const PetscInt subvertex = firstSubVertex+v; 2979efa14ee0SMatthew G Knepley PetscInt dof, off, sdof, soff, d; 2980e6ccafaeSMatthew G Knepley 2981e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 2982e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, vertex, &off);CHKERRQ(ierr); 2983efa14ee0SMatthew G Knepley ierr = PetscSectionGetDof(subCoordSection, subvertex, &sdof);CHKERRQ(ierr); 2984efa14ee0SMatthew G Knepley ierr = PetscSectionGetOffset(subCoordSection, subvertex, &soff);CHKERRQ(ierr); 2985efa14ee0SMatthew G Knepley if (dof != sdof) SETERRQ4(comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 2986e6ccafaeSMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 2987e6ccafaeSMatthew G Knepley } 2988e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 2989e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(subCoordinates, &subCoords);CHKERRQ(ierr); 29903b399e24SMatthew G. Knepley } 2991e6ccafaeSMatthew G Knepley ierr = DMSetCoordinatesLocal(subdm, subCoordinates);CHKERRQ(ierr); 2992e6ccafaeSMatthew G Knepley ierr = VecDestroy(&subCoordinates);CHKERRQ(ierr); 2993e6ccafaeSMatthew G Knepley } 2994efa14ee0SMatthew G Knepley /* Cleanup */ 2995efa14ee0SMatthew G Knepley if (subvertexIS) {ierr = ISRestoreIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 2996efa14ee0SMatthew G Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 2997efa14ee0SMatthew G Knepley if (subcellIS) {ierr = ISRestoreIndices(subcellIS, &subCells);CHKERRQ(ierr);} 2998efa14ee0SMatthew G Knepley ierr = ISDestroy(&subcellIS);CHKERRQ(ierr); 2999e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3000e6ccafaeSMatthew G Knepley } 3001e6ccafaeSMatthew G Knepley 30023982b651SMatthew G. Knepley PETSC_STATIC_INLINE PetscInt DMPlexFilterPoint_Internal(PetscInt point, PetscInt firstSubPoint, PetscInt numSubPoints, const PetscInt subPoints[]) 30033982b651SMatthew G. Knepley { 30043982b651SMatthew G. Knepley PetscInt subPoint; 30053982b651SMatthew G. Knepley PetscErrorCode ierr; 30063982b651SMatthew G. Knepley 30073982b651SMatthew G. Knepley ierr = PetscFindInt(point, numSubPoints, subPoints, &subPoint); if (ierr < 0) return ierr; 30083982b651SMatthew G. Knepley return subPoint < 0 ? subPoint : firstSubPoint+subPoint; 30093982b651SMatthew G. Knepley } 30103982b651SMatthew G. Knepley 3011158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmeshGeneric_Interpolated(DM dm, DMLabel label, PetscInt value, PetscBool markedFaces, PetscBool isCohesive, PetscInt cellHeight, DM subdm) 3012e6ccafaeSMatthew G Knepley { 301382f516ccSBarry Smith MPI_Comm comm; 301453156dfcSMatthew G. Knepley DMLabel subpointMap; 3015efa14ee0SMatthew G Knepley IS *subpointIS; 3016efa14ee0SMatthew G Knepley const PetscInt **subpoints; 30173982b651SMatthew G. Knepley PetscInt *numSubPoints, *firstSubPoint, *coneNew, *orntNew; 3018412e9a14SMatthew G. Knepley PetscInt totSubPoints = 0, maxConeSize, dim, p, d, v; 30190d366550SMatthew G. Knepley PetscMPIInt rank; 3020e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 3021e6ccafaeSMatthew G Knepley 3022e6ccafaeSMatthew G Knepley PetscFunctionBegin; 302382f516ccSBarry Smith ierr = PetscObjectGetComm((PetscObject)dm,&comm);CHKERRQ(ierr); 30240d366550SMatthew G. Knepley ierr = MPI_Comm_rank(comm, &rank);CHKERRQ(ierr); 3025efa14ee0SMatthew G Knepley /* Create subpointMap which marks the submesh */ 3026d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap);CHKERRQ(ierr); 3027efa14ee0SMatthew G Knepley ierr = DMPlexSetSubpointMap(subdm, subpointMap);CHKERRQ(ierr); 3028bec263e5SMatthew G. Knepley if (cellHeight) { 30293982b651SMatthew G. Knepley if (isCohesive) {ierr = DMPlexMarkCohesiveSubmesh_Interpolated(dm, label, value, subpointMap, subdm);CHKERRQ(ierr);} 3030158acfadSMatthew G. Knepley else {ierr = DMPlexMarkSubmesh_Interpolated(dm, label, value, markedFaces, subpointMap, subdm);CHKERRQ(ierr);} 3031bec263e5SMatthew G. Knepley } else { 3032bec263e5SMatthew G. Knepley DMLabel depth; 3033bec263e5SMatthew G. Knepley IS pointIS; 3034bec263e5SMatthew G. Knepley const PetscInt *points; 3035bec263e5SMatthew G. Knepley PetscInt numPoints; 3036bec263e5SMatthew G. Knepley 3037bec263e5SMatthew G. Knepley ierr = DMPlexGetDepthLabel(dm, &depth);CHKERRQ(ierr); 3038bec263e5SMatthew G. Knepley ierr = DMLabelGetStratumSize(label, value, &numPoints);CHKERRQ(ierr); 3039bec263e5SMatthew G. Knepley ierr = DMLabelGetStratumIS(label, value, &pointIS);CHKERRQ(ierr); 3040bec263e5SMatthew G. Knepley ierr = ISGetIndices(pointIS, &points);CHKERRQ(ierr); 3041bec263e5SMatthew G. Knepley for (p = 0; p < numPoints; ++p) { 3042bec263e5SMatthew G. Knepley PetscInt *closure = NULL; 3043bec263e5SMatthew G. Knepley PetscInt closureSize, c, pdim; 3044bec263e5SMatthew G. Knepley 3045bec263e5SMatthew G. Knepley ierr = DMPlexGetTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 3046bec263e5SMatthew G. Knepley for (c = 0; c < closureSize*2; c += 2) { 3047bec263e5SMatthew G. Knepley ierr = DMLabelGetValue(depth, closure[c], &pdim);CHKERRQ(ierr); 3048bec263e5SMatthew G. Knepley ierr = DMLabelSetValue(subpointMap, closure[c], pdim);CHKERRQ(ierr); 3049bec263e5SMatthew G. Knepley } 3050bec263e5SMatthew G. Knepley ierr = DMPlexRestoreTransitiveClosure(dm, points[p], PETSC_TRUE, &closureSize, &closure);CHKERRQ(ierr); 3051bec263e5SMatthew G. Knepley } 3052bec263e5SMatthew G. Knepley ierr = ISRestoreIndices(pointIS, &points);CHKERRQ(ierr); 3053bec263e5SMatthew G. Knepley ierr = ISDestroy(&pointIS);CHKERRQ(ierr); 3054bec263e5SMatthew G. Knepley } 3055efa14ee0SMatthew G Knepley /* Setup chart */ 3056c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 3057dcca6d9dSJed Brown ierr = PetscMalloc4(dim+1,&numSubPoints,dim+1,&firstSubPoint,dim+1,&subpointIS,dim+1,&subpoints);CHKERRQ(ierr); 3058e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3059e6ccafaeSMatthew G Knepley ierr = DMLabelGetStratumSize(subpointMap, d, &numSubPoints[d]);CHKERRQ(ierr); 3060e6ccafaeSMatthew G Knepley totSubPoints += numSubPoints[d]; 3061e6ccafaeSMatthew G Knepley } 3062e6ccafaeSMatthew G Knepley ierr = DMPlexSetChart(subdm, 0, totSubPoints);CHKERRQ(ierr); 3063bec263e5SMatthew G. Knepley ierr = DMPlexSetVTKCellHeight(subdm, cellHeight);CHKERRQ(ierr); 3064e6ccafaeSMatthew G Knepley /* Set cone sizes */ 3065e6ccafaeSMatthew G Knepley firstSubPoint[dim] = 0; 3066e6ccafaeSMatthew G Knepley firstSubPoint[0] = firstSubPoint[dim] + numSubPoints[dim]; 3067e6ccafaeSMatthew G Knepley if (dim > 1) {firstSubPoint[dim-1] = firstSubPoint[0] + numSubPoints[0];} 3068e6ccafaeSMatthew G Knepley if (dim > 2) {firstSubPoint[dim-2] = firstSubPoint[dim-1] + numSubPoints[dim-1];} 3069e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3070e6ccafaeSMatthew G Knepley ierr = DMLabelGetStratumIS(subpointMap, d, &subpointIS[d]);CHKERRQ(ierr); 30710ae02aa4SMatthew G. Knepley if (subpointIS[d]) {ierr = ISGetIndices(subpointIS[d], &subpoints[d]);CHKERRQ(ierr);} 3072e6ccafaeSMatthew G Knepley } 3073412e9a14SMatthew G. Knepley /* We do not want this label automatically computed, instead we compute it here */ 3074412e9a14SMatthew G. Knepley ierr = DMCreateLabel(subdm, "celltype");CHKERRQ(ierr); 3075e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3076e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3077e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3078e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 3079e6ccafaeSMatthew G Knepley const PetscInt *cone; 3080e6ccafaeSMatthew G Knepley PetscInt coneSize, coneSizeNew, c, val; 3081412e9a14SMatthew G. Knepley DMPolytopeType ct; 3082e6ccafaeSMatthew G Knepley 3083e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 3084e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, subpoint, coneSize);CHKERRQ(ierr); 3085412e9a14SMatthew G. Knepley ierr = DMPlexGetCellType(dm, point, &ct);CHKERRQ(ierr); 3086412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(subdm, subpoint, ct);CHKERRQ(ierr); 3087bec263e5SMatthew G. Knepley if (cellHeight && (d == dim)) { 3088e6ccafaeSMatthew G Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 3089e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 3090e6ccafaeSMatthew G Knepley ierr = DMLabelGetValue(subpointMap, cone[c], &val);CHKERRQ(ierr); 3091e6ccafaeSMatthew G Knepley if (val >= 0) coneSizeNew++; 3092e6ccafaeSMatthew G Knepley } 3093e6ccafaeSMatthew G Knepley ierr = DMPlexSetConeSize(subdm, subpoint, coneSizeNew);CHKERRQ(ierr); 3094412e9a14SMatthew G. Knepley ierr = DMPlexSetCellType(subdm, subpoint, DM_POLYTOPE_FV_GHOST);CHKERRQ(ierr); 3095e6ccafaeSMatthew G Knepley } 3096e6ccafaeSMatthew G Knepley } 3097e6ccafaeSMatthew G Knepley } 3098d67d17b1SMatthew G. Knepley ierr = DMLabelDestroy(&subpointMap);CHKERRQ(ierr); 3099e6ccafaeSMatthew G Knepley ierr = DMSetUp(subdm);CHKERRQ(ierr); 3100e6ccafaeSMatthew G Knepley /* Set cones */ 31010298fd71SBarry Smith ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 31023982b651SMatthew G. Knepley ierr = PetscMalloc2(maxConeSize,&coneNew,maxConeSize,&orntNew);CHKERRQ(ierr); 3103e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 3104e6ccafaeSMatthew G Knepley for (p = 0; p < numSubPoints[d]; ++p) { 3105e6ccafaeSMatthew G Knepley const PetscInt point = subpoints[d][p]; 3106e6ccafaeSMatthew G Knepley const PetscInt subpoint = firstSubPoint[d] + p; 31070e49e2e2SMatthew G. Knepley const PetscInt *cone, *ornt; 31080d366550SMatthew G. Knepley PetscInt coneSize, subconeSize, coneSizeNew, c, subc, fornt = 0; 3109e6ccafaeSMatthew G Knepley 31100d366550SMatthew G. Knepley if (d == dim-1) { 31110d366550SMatthew G. Knepley const PetscInt *support, *cone, *ornt; 31120d366550SMatthew G. Knepley PetscInt supportSize, coneSize, s, subc; 31130d366550SMatthew G. Knepley 31140d366550SMatthew G. Knepley ierr = DMPlexGetSupport(dm, point, &support);CHKERRQ(ierr); 31150d366550SMatthew G. Knepley ierr = DMPlexGetSupportSize(dm, point, &supportSize);CHKERRQ(ierr); 31160d366550SMatthew G. Knepley for (s = 0; s < supportSize; ++s) { 3117412e9a14SMatthew G. Knepley PetscBool isHybrid; 3118412e9a14SMatthew G. Knepley 3119412e9a14SMatthew G. Knepley ierr = DMPlexCellIsHybrid_Internal(dm, support[s], &isHybrid);CHKERRQ(ierr); 3120412e9a14SMatthew G. Knepley if (!isHybrid) continue; 31210d366550SMatthew G. Knepley ierr = PetscFindInt(support[s], numSubPoints[d+1], subpoints[d+1], &subc);CHKERRQ(ierr); 31220d366550SMatthew G. Knepley if (subc >= 0) { 31230d366550SMatthew G. Knepley const PetscInt ccell = subpoints[d+1][subc]; 31240d366550SMatthew G. Knepley 31257f79407eSBarry Smith ierr = DMPlexGetCone(dm, ccell, &cone);CHKERRQ(ierr); 31267f79407eSBarry Smith ierr = DMPlexGetConeSize(dm, ccell, &coneSize);CHKERRQ(ierr); 31277f79407eSBarry Smith ierr = DMPlexGetConeOrientation(dm, ccell, &ornt);CHKERRQ(ierr); 31280d366550SMatthew G. Knepley for (c = 0; c < coneSize; ++c) { 31290d366550SMatthew G. Knepley if (cone[c] == point) { 31300d366550SMatthew G. Knepley fornt = ornt[c]; 31310d366550SMatthew G. Knepley break; 31320d366550SMatthew G. Knepley } 31330d366550SMatthew G. Knepley } 31340d366550SMatthew G. Knepley break; 31350d366550SMatthew G. Knepley } 31360d366550SMatthew G. Knepley } 31370d366550SMatthew G. Knepley } 3138e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(dm, point, &coneSize);CHKERRQ(ierr); 3139e6ccafaeSMatthew G Knepley ierr = DMPlexGetConeSize(subdm, subpoint, &subconeSize);CHKERRQ(ierr); 3140e6ccafaeSMatthew G Knepley ierr = DMPlexGetCone(dm, point, &cone);CHKERRQ(ierr); 31410e49e2e2SMatthew G. Knepley ierr = DMPlexGetConeOrientation(dm, point, &ornt);CHKERRQ(ierr); 3142e6ccafaeSMatthew G Knepley for (c = 0, coneSizeNew = 0; c < coneSize; ++c) { 3143e6ccafaeSMatthew G Knepley ierr = PetscFindInt(cone[c], numSubPoints[d-1], subpoints[d-1], &subc);CHKERRQ(ierr); 314401a2673eSMatthew G. Knepley if (subc >= 0) { 314501a2673eSMatthew G. Knepley coneNew[coneSizeNew] = firstSubPoint[d-1] + subc; 31463982b651SMatthew G. Knepley orntNew[coneSizeNew] = ornt[c]; 314701a2673eSMatthew G. Knepley ++coneSizeNew; 314801a2673eSMatthew G. Knepley } 3149e6ccafaeSMatthew G Knepley } 3150e6ccafaeSMatthew G Knepley if (coneSizeNew != subconeSize) SETERRQ2(comm, PETSC_ERR_PLIB, "Number of cone points located %d does not match subcone size %d", coneSizeNew, subconeSize); 31510d366550SMatthew G. Knepley if (fornt < 0) { 31520d366550SMatthew G. Knepley /* This should be replaced by a call to DMPlexReverseCell() */ 31530d366550SMatthew G. Knepley #if 0 3154a129c400SMatthew G. Knepley ierr = DMPlexReverseCell(subdm, subpoint);CHKERRQ(ierr); 3155a129c400SMatthew G. Knepley #else 3156c0b40891SMatthew G. Knepley for (c = 0; c < coneSizeNew/2 + coneSizeNew%2; ++c) { 3157a129c400SMatthew G. Knepley PetscInt faceSize, tmp; 31580d366550SMatthew G. Knepley 31590d366550SMatthew G. Knepley tmp = coneNew[c]; 31600d366550SMatthew G. Knepley coneNew[c] = coneNew[coneSizeNew-1-c]; 31610d366550SMatthew G. Knepley coneNew[coneSizeNew-1-c] = tmp; 3162a129c400SMatthew G. Knepley ierr = DMPlexGetConeSize(dm, cone[c], &faceSize);CHKERRQ(ierr); 3163a129c400SMatthew G. Knepley tmp = orntNew[c] >= 0 ? -(faceSize-orntNew[c]) : faceSize+orntNew[c]; 3164a129c400SMatthew G. Knepley orntNew[c] = orntNew[coneSizeNew-1-c] >= 0 ? -(faceSize-orntNew[coneSizeNew-1-c]) : faceSize+orntNew[coneSizeNew-1-c]; 31650d366550SMatthew G. Knepley orntNew[coneSizeNew-1-c] = tmp; 31660d366550SMatthew G. Knepley } 31670d366550SMatthew G. Knepley } 3168e6ccafaeSMatthew G Knepley ierr = DMPlexSetCone(subdm, subpoint, coneNew);CHKERRQ(ierr); 31693982b651SMatthew G. Knepley ierr = DMPlexSetConeOrientation(subdm, subpoint, orntNew);CHKERRQ(ierr); 3170a129c400SMatthew G. Knepley #endif 3171e6ccafaeSMatthew G Knepley } 3172e6ccafaeSMatthew G Knepley } 31733982b651SMatthew G. Knepley ierr = PetscFree2(coneNew,orntNew);CHKERRQ(ierr); 3174e6ccafaeSMatthew G Knepley ierr = DMPlexSymmetrize(subdm);CHKERRQ(ierr); 3175e6ccafaeSMatthew G Knepley ierr = DMPlexStratify(subdm);CHKERRQ(ierr); 3176e6ccafaeSMatthew G Knepley /* Build coordinates */ 3177e6ccafaeSMatthew G Knepley { 3178e6ccafaeSMatthew G Knepley PetscSection coordSection, subCoordSection; 3179e6ccafaeSMatthew G Knepley Vec coordinates, subCoordinates; 3180e6ccafaeSMatthew G Knepley PetscScalar *coords, *subCoords; 3181c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize; 318224640c55SToby Isaac const char *name; 3183e6ccafaeSMatthew G Knepley 3184c0e8cf5fSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 318569d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 3186e6ccafaeSMatthew G Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 318769d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(subdm, &subCoordSection);CHKERRQ(ierr); 3188285d324eSMatthew G. Knepley ierr = PetscSectionSetNumFields(subCoordSection, 1);CHKERRQ(ierr); 3189285d324eSMatthew G. Knepley ierr = PetscSectionGetFieldComponents(coordSection, 0, &numComp);CHKERRQ(ierr); 3190285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldComponents(subCoordSection, 0, numComp);CHKERRQ(ierr); 3191e6ccafaeSMatthew G Knepley ierr = PetscSectionSetChart(subCoordSection, firstSubPoint[0], firstSubPoint[0]+numSubPoints[0]);CHKERRQ(ierr); 3192e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3193e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3194e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3195e6ccafaeSMatthew G Knepley PetscInt dof; 3196e6ccafaeSMatthew G Knepley 3197e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3198e6ccafaeSMatthew G Knepley ierr = PetscSectionSetDof(subCoordSection, subvertex, dof);CHKERRQ(ierr); 3199285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof);CHKERRQ(ierr); 3200e6ccafaeSMatthew G Knepley } 3201e6ccafaeSMatthew G Knepley ierr = PetscSectionSetUp(subCoordSection);CHKERRQ(ierr); 3202e6ccafaeSMatthew G Knepley ierr = PetscSectionGetStorageSize(subCoordSection, &coordSize);CHKERRQ(ierr); 32038b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &subCoordinates);CHKERRQ(ierr); 320424640c55SToby Isaac ierr = PetscObjectGetName((PetscObject)coordinates,&name);CHKERRQ(ierr); 320524640c55SToby Isaac ierr = PetscObjectSetName((PetscObject)subCoordinates,name);CHKERRQ(ierr); 3206e6ccafaeSMatthew G Knepley ierr = VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 3207c0e8cf5fSMatthew G. Knepley ierr = VecSetBlockSize(subCoordinates, cdim);CHKERRQ(ierr); 32082eb5907fSJed Brown ierr = VecSetType(subCoordinates,VECSTANDARD);CHKERRQ(ierr); 3209e6ccafaeSMatthew G Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 3210e6ccafaeSMatthew G Knepley ierr = VecGetArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3211e6ccafaeSMatthew G Knepley for (v = 0; v < numSubPoints[0]; ++v) { 3212e6ccafaeSMatthew G Knepley const PetscInt vertex = subpoints[0][v]; 3213e6ccafaeSMatthew G Knepley const PetscInt subvertex = firstSubPoint[0]+v; 3214e6ccafaeSMatthew G Knepley PetscInt dof, off, sdof, soff, d; 3215e6ccafaeSMatthew G Knepley 3216e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3217e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(coordSection, vertex, &off);CHKERRQ(ierr); 3218e6ccafaeSMatthew G Knepley ierr = PetscSectionGetDof(subCoordSection, subvertex, &sdof);CHKERRQ(ierr); 3219e6ccafaeSMatthew G Knepley ierr = PetscSectionGetOffset(subCoordSection, subvertex, &soff);CHKERRQ(ierr); 3220e6ccafaeSMatthew G Knepley if (dof != sdof) SETERRQ4(comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3221efa14ee0SMatthew G Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3222e6ccafaeSMatthew G Knepley } 3223e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 3224e6ccafaeSMatthew G Knepley ierr = VecRestoreArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3225e6ccafaeSMatthew G Knepley ierr = DMSetCoordinatesLocal(subdm, subCoordinates);CHKERRQ(ierr); 3226e6ccafaeSMatthew G Knepley ierr = VecDestroy(&subCoordinates);CHKERRQ(ierr); 3227e6ccafaeSMatthew G Knepley } 32283982b651SMatthew G. Knepley /* Build SF: We need this complexity because subpoints might not be selected on the owning process */ 32293982b651SMatthew G. Knepley { 32303982b651SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 32313982b651SMatthew G. Knepley IS subpIS; 32323982b651SMatthew G. Knepley const PetscSFNode *remotePoints; 32333982b651SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 32343982b651SMatthew G. Knepley const PetscInt *localPoints, *subpoints; 32353982b651SMatthew G. Knepley PetscInt *slocalPoints; 32363982b651SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubpoints = 0, numSubroots, numSubleaves = 0, l, sl, ll, pStart, pEnd, p; 32373982b651SMatthew G. Knepley PetscMPIInt rank; 32383982b651SMatthew G. Knepley 32393982b651SMatthew G. Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 32403982b651SMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 32413982b651SMatthew G. Knepley ierr = DMGetPointSF(subdm, &sfPointSub);CHKERRQ(ierr); 32423982b651SMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 32433982b651SMatthew G. Knepley ierr = DMPlexGetChart(subdm, NULL, &numSubroots);CHKERRQ(ierr); 3244*97d8846cSMatthew Knepley ierr = DMPlexGetSubpointIS(subdm, &subpIS);CHKERRQ(ierr); 32453982b651SMatthew G. Knepley if (subpIS) { 32463982b651SMatthew G. Knepley ierr = ISGetIndices(subpIS, &subpoints);CHKERRQ(ierr); 32473982b651SMatthew G. Knepley ierr = ISGetLocalSize(subpIS, &numSubpoints);CHKERRQ(ierr); 32483982b651SMatthew G. Knepley } 32493982b651SMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 32503982b651SMatthew G. Knepley if (numRoots >= 0) { 32513982b651SMatthew G. Knepley ierr = PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners);CHKERRQ(ierr); 32523982b651SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 32533982b651SMatthew G. Knepley newLocalPoints[p].rank = -2; 32543982b651SMatthew G. Knepley newLocalPoints[p].index = -2; 32553982b651SMatthew G. Knepley } 32563982b651SMatthew G. Knepley /* Set subleaves */ 32573982b651SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 32583982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 32593982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 32603982b651SMatthew G. Knepley 32613982b651SMatthew G. Knepley if (subpoint < 0) continue; 32623982b651SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 32633982b651SMatthew G. Knepley newLocalPoints[point-pStart].index = subpoint; 32643982b651SMatthew G. Knepley ++numSubleaves; 32653982b651SMatthew G. Knepley } 32663982b651SMatthew G. Knepley /* Must put in owned subpoints */ 32673982b651SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 32683982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(p, 0, numSubpoints, subpoints); 32693982b651SMatthew G. Knepley 32703982b651SMatthew G. Knepley if (subpoint < 0) { 32713982b651SMatthew G. Knepley newOwners[p-pStart].rank = -3; 32723982b651SMatthew G. Knepley newOwners[p-pStart].index = -3; 32733982b651SMatthew G. Knepley } else { 32743982b651SMatthew G. Knepley newOwners[p-pStart].rank = rank; 32753982b651SMatthew G. Knepley newOwners[p-pStart].index = subpoint; 32763982b651SMatthew G. Knepley } 32773982b651SMatthew G. Knepley } 32783982b651SMatthew G. Knepley ierr = PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 32793982b651SMatthew G. Knepley ierr = PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 32803982b651SMatthew G. Knepley ierr = PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints);CHKERRQ(ierr); 32813982b651SMatthew G. Knepley ierr = PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints);CHKERRQ(ierr); 32823982b651SMatthew G. Knepley ierr = PetscMalloc1(numSubleaves, &slocalPoints);CHKERRQ(ierr); 32833982b651SMatthew G. Knepley ierr = PetscMalloc1(numSubleaves, &sremotePoints);CHKERRQ(ierr); 32843982b651SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 32853982b651SMatthew G. Knepley const PetscInt point = localPoints[l]; 32863982b651SMatthew G. Knepley const PetscInt subpoint = DMPlexFilterPoint_Internal(point, 0, numSubpoints, subpoints); 32873982b651SMatthew G. Knepley 32883982b651SMatthew G. Knepley if (subpoint < 0) continue; 32893982b651SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 32903982b651SMatthew G. Knepley slocalPoints[sl] = subpoint; 32913982b651SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 32923982b651SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 32933982b651SMatthew G. Knepley if (sremotePoints[sl].rank < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 32943982b651SMatthew G. Knepley if (sremotePoints[sl].index < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 32953982b651SMatthew G. Knepley ++sl; 32963982b651SMatthew G. Knepley } 32973982b651SMatthew G. Knepley if (sl + ll != numSubleaves) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubleaves); 32983982b651SMatthew G. Knepley ierr = PetscFree2(newLocalPoints,newOwners);CHKERRQ(ierr); 32993982b651SMatthew G. Knepley ierr = PetscSFSetGraph(sfPointSub, numSubroots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 33003982b651SMatthew G. Knepley } 33013982b651SMatthew G. Knepley if (subpIS) { 33023982b651SMatthew G. Knepley ierr = ISRestoreIndices(subpIS, &subpoints);CHKERRQ(ierr); 33033982b651SMatthew G. Knepley } 33043982b651SMatthew G. Knepley } 3305efa14ee0SMatthew G Knepley /* Cleanup */ 3306e6ccafaeSMatthew G Knepley for (d = 0; d <= dim; ++d) { 33070ae02aa4SMatthew G. Knepley if (subpointIS[d]) {ierr = ISRestoreIndices(subpointIS[d], &subpoints[d]);CHKERRQ(ierr);} 3308e6ccafaeSMatthew G Knepley ierr = ISDestroy(&subpointIS[d]);CHKERRQ(ierr); 3309e6ccafaeSMatthew G Knepley } 3310efa14ee0SMatthew G Knepley ierr = PetscFree4(numSubPoints,firstSubPoint,subpointIS,subpoints);CHKERRQ(ierr); 3311e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3312e6ccafaeSMatthew G Knepley } 3313e6ccafaeSMatthew G Knepley 3314158acfadSMatthew G. Knepley static PetscErrorCode DMPlexCreateSubmesh_Interpolated(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM subdm) 33153982b651SMatthew G. Knepley { 33163982b651SMatthew G. Knepley PetscErrorCode ierr; 33173982b651SMatthew G. Knepley 33183982b651SMatthew G. Knepley PetscFunctionBegin; 3319158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmeshGeneric_Interpolated(dm, vertexLabel, value, markedFaces, PETSC_FALSE, 1, subdm);CHKERRQ(ierr); 33203982b651SMatthew G. Knepley PetscFunctionReturn(0); 33213982b651SMatthew G. Knepley } 33223982b651SMatthew G. Knepley 3323d0fa310fSMatthew G. Knepley /*@ 3324e6ccafaeSMatthew G Knepley DMPlexCreateSubmesh - Extract a hypersurface from the mesh using vertices defined by a label 3325e6ccafaeSMatthew G Knepley 3326e6ccafaeSMatthew G Knepley Input Parameters: 3327e6ccafaeSMatthew G Knepley + dm - The original mesh 3328158acfadSMatthew G. Knepley . vertexLabel - The DMLabel marking points contained in the surface 3329158acfadSMatthew G. Knepley . value - The label value to use 3330158acfadSMatthew G. Knepley - markedFaces - PETSC_TRUE if surface faces are marked in addition to vertices, PETSC_FALSE if only vertices are marked 3331e6ccafaeSMatthew G Knepley 3332e6ccafaeSMatthew G Knepley Output Parameter: 3333e6ccafaeSMatthew G Knepley . subdm - The surface mesh 3334e6ccafaeSMatthew G Knepley 3335e6ccafaeSMatthew G Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3336e6ccafaeSMatthew G Knepley 3337e6ccafaeSMatthew G Knepley Level: developer 3338e6ccafaeSMatthew G Knepley 3339c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3340830e53efSMatthew G. Knepley @*/ 3341158acfadSMatthew G. Knepley PetscErrorCode DMPlexCreateSubmesh(DM dm, DMLabel vertexLabel, PetscInt value, PetscBool markedFaces, DM *subdm) 3342e6ccafaeSMatthew G Knepley { 3343827c4036SVaclav Hapla DMPlexInterpolatedFlag interpolated; 3344827c4036SVaclav Hapla PetscInt dim, cdim; 3345e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 3346e6ccafaeSMatthew G Knepley 3347e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3348e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3349766ab985SMatthew G. Knepley PetscValidPointer(subdm, 3); 3350c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 335182f516ccSBarry Smith ierr = DMCreate(PetscObjectComm((PetscObject)dm), subdm);CHKERRQ(ierr); 3352e6ccafaeSMatthew G Knepley ierr = DMSetType(*subdm, DMPLEX);CHKERRQ(ierr); 3353c73cfb54SMatthew G. Knepley ierr = DMSetDimension(*subdm, dim-1);CHKERRQ(ierr); 3354dd2763adSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 3355dd2763adSMatthew G. Knepley ierr = DMSetCoordinateDim(*subdm, cdim);CHKERRQ(ierr); 3356827c4036SVaclav Hapla ierr = DMPlexIsInterpolated(dm, &interpolated);CHKERRQ(ierr); 3357827c4036SVaclav Hapla if (interpolated == DMPLEX_INTERPOLATED_PARTIAL) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Not for partially interpolated meshes"); 3358827c4036SVaclav Hapla if (interpolated) { 3359158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmesh_Interpolated(dm, vertexLabel, value, markedFaces, *subdm);CHKERRQ(ierr); 3360e6ccafaeSMatthew G Knepley } else { 3361830e53efSMatthew G. Knepley ierr = DMPlexCreateSubmesh_Uninterpolated(dm, vertexLabel, value, *subdm);CHKERRQ(ierr); 3362e6ccafaeSMatthew G Knepley } 3363e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3364e6ccafaeSMatthew G Knepley } 3365e6ccafaeSMatthew G Knepley 336627c04023SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Uninterpolated(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM subdm) 3367766ab985SMatthew G. Knepley { 3368766ab985SMatthew G. Knepley MPI_Comm comm; 3369766ab985SMatthew G. Knepley DMLabel subpointMap; 3370766ab985SMatthew G. Knepley IS subvertexIS; 3371766ab985SMatthew G. Knepley const PetscInt *subVertices; 3372fed694aaSMatthew G. Knepley PetscInt numSubVertices, firstSubVertex, numSubCells, *subCells = NULL; 3373766ab985SMatthew G. Knepley PetscInt *subface, maxConeSize, numSubFaces, firstSubFace, newFacePoint, nFV; 3374412e9a14SMatthew G. Knepley PetscInt c, f; 3375766ab985SMatthew G. Knepley PetscErrorCode ierr; 3376766ab985SMatthew G. Knepley 3377766ab985SMatthew G. Knepley PetscFunctionBegin; 3378766ab985SMatthew G. Knepley ierr = PetscObjectGetComm((PetscObject)dm, &comm);CHKERRQ(ierr); 3379766ab985SMatthew G. Knepley /* Create subpointMap which marks the submesh */ 3380d67d17b1SMatthew G. Knepley ierr = DMLabelCreate(PETSC_COMM_SELF, "subpoint_map", &subpointMap);CHKERRQ(ierr); 3381766ab985SMatthew G. Knepley ierr = DMPlexSetSubpointMap(subdm, subpointMap);CHKERRQ(ierr); 3382766ab985SMatthew G. Knepley ierr = DMLabelDestroy(&subpointMap);CHKERRQ(ierr); 338327c04023SMatthew G. Knepley ierr = DMPlexMarkCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, subpointMap, &numSubFaces, &nFV, &subCells, subdm);CHKERRQ(ierr); 3384766ab985SMatthew G. Knepley /* Setup chart */ 3385766ab985SMatthew G. Knepley ierr = DMLabelGetStratumSize(subpointMap, 0, &numSubVertices);CHKERRQ(ierr); 3386766ab985SMatthew G. Knepley ierr = DMLabelGetStratumSize(subpointMap, 2, &numSubCells);CHKERRQ(ierr); 3387766ab985SMatthew G. Knepley ierr = DMPlexSetChart(subdm, 0, numSubCells+numSubFaces+numSubVertices);CHKERRQ(ierr); 3388766ab985SMatthew G. Knepley ierr = DMPlexSetVTKCellHeight(subdm, 1);CHKERRQ(ierr); 3389766ab985SMatthew G. Knepley /* Set cone sizes */ 3390766ab985SMatthew G. Knepley firstSubVertex = numSubCells; 3391766ab985SMatthew G. Knepley firstSubFace = numSubCells+numSubVertices; 3392766ab985SMatthew G. Knepley newFacePoint = firstSubFace; 3393766ab985SMatthew G. Knepley ierr = DMLabelGetStratumIS(subpointMap, 0, &subvertexIS);CHKERRQ(ierr); 3394766ab985SMatthew G. Knepley if (subvertexIS) {ierr = ISGetIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 3395766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3396766ab985SMatthew G. Knepley ierr = DMPlexSetConeSize(subdm, c, 1);CHKERRQ(ierr); 3397766ab985SMatthew G. Knepley } 3398766ab985SMatthew G. Knepley for (f = firstSubFace; f < firstSubFace+numSubFaces; ++f) { 3399766ab985SMatthew G. Knepley ierr = DMPlexSetConeSize(subdm, f, nFV);CHKERRQ(ierr); 3400766ab985SMatthew G. Knepley } 3401766ab985SMatthew G. Knepley ierr = DMSetUp(subdm);CHKERRQ(ierr); 3402766ab985SMatthew G. Knepley /* Create face cones */ 3403766ab985SMatthew G. Knepley ierr = DMPlexGetMaxSizes(dm, &maxConeSize, NULL);CHKERRQ(ierr); 340469291d52SBarry Smith ierr = DMGetWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 3405766ab985SMatthew G. Knepley for (c = 0; c < numSubCells; ++c) { 3406766ab985SMatthew G. Knepley const PetscInt cell = subCells[c]; 3407766ab985SMatthew G. Knepley const PetscInt subcell = c; 340887feddfdSMatthew G. Knepley const PetscInt *cone, *cells; 3409412e9a14SMatthew G. Knepley PetscBool isHybrid; 341087feddfdSMatthew G. Knepley PetscInt numCells, subVertex, p, v; 3411766ab985SMatthew G. Knepley 3412412e9a14SMatthew G. Knepley ierr = DMPlexCellIsHybrid_Internal(dm, cell, &isHybrid);CHKERRQ(ierr); 3413412e9a14SMatthew G. Knepley if (!isHybrid) continue; 341487feddfdSMatthew G. Knepley ierr = DMPlexGetCone(dm, cell, &cone);CHKERRQ(ierr); 341587feddfdSMatthew G. Knepley for (v = 0; v < nFV; ++v) { 341687feddfdSMatthew G. Knepley ierr = PetscFindInt(cone[v], numSubVertices, subVertices, &subVertex);CHKERRQ(ierr); 341787feddfdSMatthew G. Knepley subface[v] = firstSubVertex+subVertex; 341887feddfdSMatthew G. Knepley } 341987feddfdSMatthew G. Knepley ierr = DMPlexSetCone(subdm, newFacePoint, subface);CHKERRQ(ierr); 342087feddfdSMatthew G. Knepley ierr = DMPlexSetCone(subdm, subcell, &newFacePoint);CHKERRQ(ierr); 342187feddfdSMatthew G. Knepley ierr = DMPlexGetJoin(dm, nFV, cone, &numCells, &cells);CHKERRQ(ierr); 342227234c99SMatthew G. Knepley /* Not true in parallel 342327234c99SMatthew G. Knepley if (numCells != 2) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Cohesive cells should separate two cells"); */ 342487feddfdSMatthew G. Knepley for (p = 0; p < numCells; ++p) { 342587feddfdSMatthew G. Knepley PetscInt negsubcell; 3426412e9a14SMatthew G. Knepley PetscBool isHybrid; 3427766ab985SMatthew G. Knepley 3428412e9a14SMatthew G. Knepley ierr = DMPlexCellIsHybrid_Internal(dm, cells[p], &isHybrid);CHKERRQ(ierr); 3429412e9a14SMatthew G. Knepley if (isHybrid) continue; 343087feddfdSMatthew G. Knepley /* I know this is a crap search */ 343187feddfdSMatthew G. Knepley for (negsubcell = 0; negsubcell < numSubCells; ++negsubcell) { 343287feddfdSMatthew G. Knepley if (subCells[negsubcell] == cells[p]) break; 3433766ab985SMatthew G. Knepley } 343487feddfdSMatthew G. Knepley if (negsubcell == numSubCells) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Could not find negative face neighbor for cohesive cell %d", cell); 343587feddfdSMatthew G. Knepley ierr = DMPlexSetCone(subdm, negsubcell, &newFacePoint);CHKERRQ(ierr); 3436766ab985SMatthew G. Knepley } 343787feddfdSMatthew G. Knepley ierr = DMPlexRestoreJoin(dm, nFV, cone, &numCells, &cells);CHKERRQ(ierr); 343887feddfdSMatthew G. Knepley ++newFacePoint; 3439766ab985SMatthew G. Knepley } 344069291d52SBarry Smith ierr = DMRestoreWorkArray(subdm, maxConeSize, MPIU_INT, (void**) &subface);CHKERRQ(ierr); 3441766ab985SMatthew G. Knepley ierr = DMPlexSymmetrize(subdm);CHKERRQ(ierr); 3442766ab985SMatthew G. Knepley ierr = DMPlexStratify(subdm);CHKERRQ(ierr); 3443766ab985SMatthew G. Knepley /* Build coordinates */ 3444766ab985SMatthew G. Knepley { 3445766ab985SMatthew G. Knepley PetscSection coordSection, subCoordSection; 3446766ab985SMatthew G. Knepley Vec coordinates, subCoordinates; 3447766ab985SMatthew G. Knepley PetscScalar *coords, *subCoords; 3448c0e8cf5fSMatthew G. Knepley PetscInt cdim, numComp, coordSize, v; 344924640c55SToby Isaac const char *name; 3450766ab985SMatthew G. Knepley 3451c0e8cf5fSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 345269d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(dm, &coordSection);CHKERRQ(ierr); 3453766ab985SMatthew G. Knepley ierr = DMGetCoordinatesLocal(dm, &coordinates);CHKERRQ(ierr); 345469d8a9ceSMatthew G. Knepley ierr = DMGetCoordinateSection(subdm, &subCoordSection);CHKERRQ(ierr); 3455285d324eSMatthew G. Knepley ierr = PetscSectionSetNumFields(subCoordSection, 1);CHKERRQ(ierr); 3456285d324eSMatthew G. Knepley ierr = PetscSectionGetFieldComponents(coordSection, 0, &numComp);CHKERRQ(ierr); 3457285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldComponents(subCoordSection, 0, numComp);CHKERRQ(ierr); 3458766ab985SMatthew G. Knepley ierr = PetscSectionSetChart(subCoordSection, firstSubVertex, firstSubVertex+numSubVertices);CHKERRQ(ierr); 3459766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3460766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3461766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3462766ab985SMatthew G. Knepley PetscInt dof; 3463766ab985SMatthew G. Knepley 3464766ab985SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3465766ab985SMatthew G. Knepley ierr = PetscSectionSetDof(subCoordSection, subvertex, dof);CHKERRQ(ierr); 3466285d324eSMatthew G. Knepley ierr = PetscSectionSetFieldDof(subCoordSection, subvertex, 0, dof);CHKERRQ(ierr); 3467766ab985SMatthew G. Knepley } 3468766ab985SMatthew G. Knepley ierr = PetscSectionSetUp(subCoordSection);CHKERRQ(ierr); 3469766ab985SMatthew G. Knepley ierr = PetscSectionGetStorageSize(subCoordSection, &coordSize);CHKERRQ(ierr); 34708b9ced59SLisandro Dalcin ierr = VecCreate(PETSC_COMM_SELF, &subCoordinates);CHKERRQ(ierr); 347124640c55SToby Isaac ierr = PetscObjectGetName((PetscObject)coordinates,&name);CHKERRQ(ierr); 347224640c55SToby Isaac ierr = PetscObjectSetName((PetscObject)subCoordinates,name);CHKERRQ(ierr); 3473766ab985SMatthew G. Knepley ierr = VecSetSizes(subCoordinates, coordSize, PETSC_DETERMINE);CHKERRQ(ierr); 3474c0e8cf5fSMatthew G. Knepley ierr = VecSetBlockSize(subCoordinates, cdim);CHKERRQ(ierr); 34752eb5907fSJed Brown ierr = VecSetType(subCoordinates,VECSTANDARD);CHKERRQ(ierr); 3476766ab985SMatthew G. Knepley ierr = VecGetArray(coordinates, &coords);CHKERRQ(ierr); 3477766ab985SMatthew G. Knepley ierr = VecGetArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3478766ab985SMatthew G. Knepley for (v = 0; v < numSubVertices; ++v) { 3479766ab985SMatthew G. Knepley const PetscInt vertex = subVertices[v]; 3480766ab985SMatthew G. Knepley const PetscInt subvertex = firstSubVertex+v; 3481766ab985SMatthew G. Knepley PetscInt dof, off, sdof, soff, d; 3482766ab985SMatthew G. Knepley 3483766ab985SMatthew G. Knepley ierr = PetscSectionGetDof(coordSection, vertex, &dof);CHKERRQ(ierr); 3484766ab985SMatthew G. Knepley ierr = PetscSectionGetOffset(coordSection, vertex, &off);CHKERRQ(ierr); 3485766ab985SMatthew G. Knepley ierr = PetscSectionGetDof(subCoordSection, subvertex, &sdof);CHKERRQ(ierr); 3486766ab985SMatthew G. Knepley ierr = PetscSectionGetOffset(subCoordSection, subvertex, &soff);CHKERRQ(ierr); 3487766ab985SMatthew G. Knepley if (dof != sdof) SETERRQ4(comm, PETSC_ERR_PLIB, "Coordinate dimension %d on subvertex %d, vertex %d should be %d", sdof, subvertex, vertex, dof); 3488766ab985SMatthew G. Knepley for (d = 0; d < dof; ++d) subCoords[soff+d] = coords[off+d]; 3489766ab985SMatthew G. Knepley } 3490766ab985SMatthew G. Knepley ierr = VecRestoreArray(coordinates, &coords);CHKERRQ(ierr); 3491766ab985SMatthew G. Knepley ierr = VecRestoreArray(subCoordinates, &subCoords);CHKERRQ(ierr); 3492766ab985SMatthew G. Knepley ierr = DMSetCoordinatesLocal(subdm, subCoordinates);CHKERRQ(ierr); 3493766ab985SMatthew G. Knepley ierr = VecDestroy(&subCoordinates);CHKERRQ(ierr); 3494766ab985SMatthew G. Knepley } 3495aca35d17SMatthew G. Knepley /* Build SF */ 3496aca35d17SMatthew G. Knepley CHKMEMQ; 3497aca35d17SMatthew G. Knepley { 3498aca35d17SMatthew G. Knepley PetscSF sfPoint, sfPointSub; 3499aca35d17SMatthew G. Knepley const PetscSFNode *remotePoints; 3500bdcf2095SMatthew G. Knepley PetscSFNode *sremotePoints, *newLocalPoints, *newOwners; 3501aca35d17SMatthew G. Knepley const PetscInt *localPoints; 3502bdcf2095SMatthew G. Knepley PetscInt *slocalPoints; 350349c26ae4SMatthew G. Knepley PetscInt numRoots, numLeaves, numSubRoots = numSubCells+numSubFaces+numSubVertices, numSubLeaves = 0, l, sl, ll, pStart, pEnd, p, vStart, vEnd; 3504bdcf2095SMatthew G. Knepley PetscMPIInt rank; 3505aca35d17SMatthew G. Knepley 3506bdcf2095SMatthew G. Knepley ierr = MPI_Comm_rank(PetscObjectComm((PetscObject) dm), &rank);CHKERRQ(ierr); 3507aca35d17SMatthew G. Knepley ierr = DMGetPointSF(dm, &sfPoint);CHKERRQ(ierr); 3508aca35d17SMatthew G. Knepley ierr = DMGetPointSF(subdm, &sfPointSub);CHKERRQ(ierr); 3509aca35d17SMatthew G. Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 3510aca35d17SMatthew G. Knepley ierr = DMPlexGetDepthStratum(dm, 0, &vStart, &vEnd);CHKERRQ(ierr); 3511aca35d17SMatthew G. Knepley ierr = PetscSFGetGraph(sfPoint, &numRoots, &numLeaves, &localPoints, &remotePoints);CHKERRQ(ierr); 3512aca35d17SMatthew G. Knepley if (numRoots >= 0) { 3513aca35d17SMatthew G. Knepley /* Only vertices should be shared */ 3514dcca6d9dSJed Brown ierr = PetscMalloc2(pEnd-pStart,&newLocalPoints,numRoots,&newOwners);CHKERRQ(ierr); 3515bdcf2095SMatthew G. Knepley for (p = 0; p < pEnd-pStart; ++p) { 3516bdcf2095SMatthew G. Knepley newLocalPoints[p].rank = -2; 3517bdcf2095SMatthew G. Knepley newLocalPoints[p].index = -2; 3518bdcf2095SMatthew G. Knepley } 35199e0823b2SMatthew G. Knepley /* Set subleaves */ 3520aca35d17SMatthew G. Knepley for (l = 0; l < numLeaves; ++l) { 3521aca35d17SMatthew G. Knepley const PetscInt point = localPoints[l]; 3522bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3523aca35d17SMatthew G. Knepley 3524aca35d17SMatthew G. Knepley if ((point < vStart) && (point >= vEnd)) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Should not be mapping anything but vertices, %d", point); 3525bdcf2095SMatthew G. Knepley if (subPoint < 0) continue; 3526bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].rank = rank; 3527bdcf2095SMatthew G. Knepley newLocalPoints[point-pStart].index = subPoint; 3528bdcf2095SMatthew G. Knepley ++numSubLeaves; 3529aca35d17SMatthew G. Knepley } 35309e0823b2SMatthew G. Knepley /* Must put in owned subpoints */ 35319e0823b2SMatthew G. Knepley for (p = pStart; p < pEnd; ++p) { 35329e0823b2SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(p, firstSubVertex, numSubVertices, subVertices); 35339e0823b2SMatthew G. Knepley 35349e0823b2SMatthew G. Knepley if (subPoint < 0) { 35359e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = -3; 35369e0823b2SMatthew G. Knepley newOwners[p-pStart].index = -3; 35379e0823b2SMatthew G. Knepley } else { 35389e0823b2SMatthew G. Knepley newOwners[p-pStart].rank = rank; 35399e0823b2SMatthew G. Knepley newOwners[p-pStart].index = subPoint; 35409e0823b2SMatthew G. Knepley } 3541bdcf2095SMatthew G. Knepley } 3542bdcf2095SMatthew G. Knepley ierr = PetscSFReduceBegin(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 3543bdcf2095SMatthew G. Knepley ierr = PetscSFReduceEnd(sfPoint, MPIU_2INT, newLocalPoints, newOwners, MPI_MAXLOC);CHKERRQ(ierr); 3544bdcf2095SMatthew G. Knepley ierr = PetscSFBcastBegin(sfPoint, MPIU_2INT, newOwners, newLocalPoints);CHKERRQ(ierr); 3545bdcf2095SMatthew G. Knepley ierr = PetscSFBcastEnd(sfPoint, MPIU_2INT, newOwners, newLocalPoints);CHKERRQ(ierr); 3546785e854fSJed Brown ierr = PetscMalloc1(numSubLeaves, &slocalPoints);CHKERRQ(ierr); 3547785e854fSJed Brown ierr = PetscMalloc1(numSubLeaves, &sremotePoints);CHKERRQ(ierr); 354849c26ae4SMatthew G. Knepley for (l = 0, sl = 0, ll = 0; l < numLeaves; ++l) { 3549bdcf2095SMatthew G. Knepley const PetscInt point = localPoints[l]; 3550bdcf2095SMatthew G. Knepley const PetscInt subPoint = DMPlexFilterPoint_Internal(point, firstSubVertex, numSubVertices, subVertices); 3551aca35d17SMatthew G. Knepley 3552aca35d17SMatthew G. Knepley if (subPoint < 0) continue; 355349c26ae4SMatthew G. Knepley if (newLocalPoints[point].rank == rank) {++ll; continue;} 3554aca35d17SMatthew G. Knepley slocalPoints[sl] = subPoint; 3555bdcf2095SMatthew G. Knepley sremotePoints[sl].rank = newLocalPoints[point].rank; 3556bdcf2095SMatthew G. Knepley sremotePoints[sl].index = newLocalPoints[point].index; 3557bdcf2095SMatthew G. Knepley if (sremotePoints[sl].rank < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote rank for local point %d", point); 3558bdcf2095SMatthew G. Knepley if (sremotePoints[sl].index < 0) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Invalid remote subpoint for local point %d", point); 3559aca35d17SMatthew G. Knepley ++sl; 3560aca35d17SMatthew G. Knepley } 3561bdcf2095SMatthew G. Knepley ierr = PetscFree2(newLocalPoints,newOwners);CHKERRQ(ierr); 356249c26ae4SMatthew G. Knepley if (sl + ll != numSubLeaves) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Mismatch in number of subleaves %d + %d != %d", sl, ll, numSubLeaves); 356349c26ae4SMatthew G. Knepley ierr = PetscSFSetGraph(sfPointSub, numSubRoots, sl, slocalPoints, PETSC_OWN_POINTER, sremotePoints, PETSC_OWN_POINTER);CHKERRQ(ierr); 3564aca35d17SMatthew G. Knepley } 3565aca35d17SMatthew G. Knepley } 3566aca35d17SMatthew G. Knepley CHKMEMQ; 3567766ab985SMatthew G. Knepley /* Cleanup */ 3568766ab985SMatthew G. Knepley if (subvertexIS) {ierr = ISRestoreIndices(subvertexIS, &subVertices);CHKERRQ(ierr);} 3569766ab985SMatthew G. Knepley ierr = ISDestroy(&subvertexIS);CHKERRQ(ierr); 3570766ab985SMatthew G. Knepley ierr = PetscFree(subCells);CHKERRQ(ierr); 3571766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3572766ab985SMatthew G. Knepley } 3573766ab985SMatthew G. Knepley 35743982b651SMatthew G. Knepley static PetscErrorCode DMPlexCreateCohesiveSubmesh_Interpolated(DM dm, const char labelname[], PetscInt value, DM subdm) 3575766ab985SMatthew G. Knepley { 35763982b651SMatthew G. Knepley DMLabel label = NULL; 3577766ab985SMatthew G. Knepley PetscErrorCode ierr; 3578766ab985SMatthew G. Knepley 3579766ab985SMatthew G. Knepley PetscFunctionBegin; 3580c58f1c22SToby Isaac if (labelname) {ierr = DMGetLabel(dm, labelname, &label);CHKERRQ(ierr);} 3581158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmeshGeneric_Interpolated(dm, label, value, PETSC_FALSE, PETSC_TRUE, 1, subdm);CHKERRQ(ierr); 3582766ab985SMatthew G. Knepley PetscFunctionReturn(0); 3583766ab985SMatthew G. Knepley } 3584766ab985SMatthew G. Knepley 3585c08575a3SMatthew G. Knepley /*@C 358627c04023SMatthew G. Knepley DMPlexCreateCohesiveSubmesh - Extract from a mesh with cohesive cells the hypersurface defined by one face of the cells. Optionally, a Label an be given to restrict the cells. 3587766ab985SMatthew G. Knepley 3588766ab985SMatthew G. Knepley Input Parameters: 3589766ab985SMatthew G. Knepley + dm - The original mesh 359027c04023SMatthew G. Knepley . hasLagrange - The mesh has Lagrange unknowns in the cohesive cells 35917afc1a8bSJed Brown . label - A label name, or NULL 359227c04023SMatthew G. Knepley - value - A label value 3593766ab985SMatthew G. Knepley 3594766ab985SMatthew G. Knepley Output Parameter: 3595766ab985SMatthew G. Knepley . subdm - The surface mesh 3596766ab985SMatthew G. Knepley 3597766ab985SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3598766ab985SMatthew G. Knepley 3599766ab985SMatthew G. Knepley Level: developer 3600766ab985SMatthew G. Knepley 3601766ab985SMatthew G. Knepley .seealso: DMPlexGetSubpointMap(), DMPlexCreateSubmesh() 3602c08575a3SMatthew G. Knepley @*/ 360327c04023SMatthew G. Knepley PetscErrorCode DMPlexCreateCohesiveSubmesh(DM dm, PetscBool hasLagrange, const char label[], PetscInt value, DM *subdm) 3604766ab985SMatthew G. Knepley { 3605c0e8cf5fSMatthew G. Knepley PetscInt dim, cdim, depth; 3606766ab985SMatthew G. Knepley PetscErrorCode ierr; 3607766ab985SMatthew G. Knepley 3608766ab985SMatthew G. Knepley PetscFunctionBegin; 3609766ab985SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 361027c04023SMatthew G. Knepley PetscValidPointer(subdm, 5); 3611c73cfb54SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 3612766ab985SMatthew G. Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 3613766ab985SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject)dm), subdm);CHKERRQ(ierr); 3614766ab985SMatthew G. Knepley ierr = DMSetType(*subdm, DMPLEX);CHKERRQ(ierr); 3615c73cfb54SMatthew G. Knepley ierr = DMSetDimension(*subdm, dim-1);CHKERRQ(ierr); 3616c0e8cf5fSMatthew G. Knepley ierr = DMGetCoordinateDim(dm, &cdim);CHKERRQ(ierr); 3617c0e8cf5fSMatthew G. Knepley ierr = DMSetCoordinateDim(*subdm, cdim);CHKERRQ(ierr); 3618766ab985SMatthew G. Knepley if (depth == dim) { 3619b3154360SMatthew G. Knepley ierr = DMPlexCreateCohesiveSubmesh_Interpolated(dm, label, value, *subdm);CHKERRQ(ierr); 3620766ab985SMatthew G. Knepley } else { 362127c04023SMatthew G. Knepley ierr = DMPlexCreateCohesiveSubmesh_Uninterpolated(dm, hasLagrange, label, value, *subdm);CHKERRQ(ierr); 3622e6ccafaeSMatthew G Knepley } 3623e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3624e6ccafaeSMatthew G Knepley } 3625e6ccafaeSMatthew G Knepley 3626bec263e5SMatthew G. Knepley /*@ 3627bec263e5SMatthew G. Knepley DMPlexFilter - Extract a subset of mesh cells defined by a label as a separate mesh 3628bec263e5SMatthew G. Knepley 3629bec263e5SMatthew G. Knepley Input Parameters: 3630bec263e5SMatthew G. Knepley + dm - The original mesh 3631bec263e5SMatthew G. Knepley . cellLabel - The DMLabel marking cells contained in the new mesh 3632bec263e5SMatthew G. Knepley - value - The label value to use 3633bec263e5SMatthew G. Knepley 3634bec263e5SMatthew G. Knepley Output Parameter: 3635bec263e5SMatthew G. Knepley . subdm - The new mesh 3636bec263e5SMatthew G. Knepley 3637bec263e5SMatthew G. Knepley Note: This function produces a DMLabel mapping original points in the submesh to their depth. This can be obtained using DMPlexGetSubpointMap(). 3638bec263e5SMatthew G. Knepley 3639bec263e5SMatthew G. Knepley Level: developer 3640bec263e5SMatthew G. Knepley 3641c58f1c22SToby Isaac .seealso: DMPlexGetSubpointMap(), DMGetLabel(), DMLabelSetValue() 3642bec263e5SMatthew G. Knepley @*/ 3643bec263e5SMatthew G. Knepley PetscErrorCode DMPlexFilter(DM dm, DMLabel cellLabel, PetscInt value, DM *subdm) 3644bec263e5SMatthew G. Knepley { 3645bec263e5SMatthew G. Knepley PetscInt dim; 3646bec263e5SMatthew G. Knepley PetscErrorCode ierr; 3647bec263e5SMatthew G. Knepley 3648bec263e5SMatthew G. Knepley PetscFunctionBegin; 3649bec263e5SMatthew G. Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3650bec263e5SMatthew G. Knepley PetscValidPointer(subdm, 3); 3651bec263e5SMatthew G. Knepley ierr = DMGetDimension(dm, &dim);CHKERRQ(ierr); 3652bec263e5SMatthew G. Knepley ierr = DMCreate(PetscObjectComm((PetscObject) dm), subdm);CHKERRQ(ierr); 3653bec263e5SMatthew G. Knepley ierr = DMSetType(*subdm, DMPLEX);CHKERRQ(ierr); 3654bec263e5SMatthew G. Knepley ierr = DMSetDimension(*subdm, dim);CHKERRQ(ierr); 3655bec263e5SMatthew G. Knepley /* Extract submesh in place, could be empty on some procs, could have inconsistency if procs do not both extract a shared cell */ 3656158acfadSMatthew G. Knepley ierr = DMPlexCreateSubmeshGeneric_Interpolated(dm, cellLabel, value, PETSC_FALSE, PETSC_FALSE, 0, *subdm);CHKERRQ(ierr); 3657bec263e5SMatthew G. Knepley PetscFunctionReturn(0); 3658bec263e5SMatthew G. Knepley } 3659bec263e5SMatthew G. Knepley 366064beef6dSMatthew G. Knepley /*@ 366164beef6dSMatthew G. Knepley DMPlexGetSubpointMap - Returns a DMLabel with point dimension as values 366264beef6dSMatthew G. Knepley 366364beef6dSMatthew G. Knepley Input Parameter: 366464beef6dSMatthew G. Knepley . dm - The submesh DM 366564beef6dSMatthew G. Knepley 366664beef6dSMatthew G. Knepley Output Parameter: 366764beef6dSMatthew G. Knepley . subpointMap - The DMLabel of all the points from the original mesh in this submesh, or NULL if this is not a submesh 366864beef6dSMatthew G. Knepley 366964beef6dSMatthew G. Knepley Level: developer 367064beef6dSMatthew G. Knepley 3671*97d8846cSMatthew Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointIS() 367264beef6dSMatthew G. Knepley @*/ 3673e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexGetSubpointMap(DM dm, DMLabel *subpointMap) 3674e6ccafaeSMatthew G Knepley { 3675e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3676e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3677e6ccafaeSMatthew G Knepley PetscValidPointer(subpointMap, 2); 367865663942SMatthew G. Knepley *subpointMap = ((DM_Plex*) dm->data)->subpointMap; 3679e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3680e6ccafaeSMatthew G Knepley } 3681e6ccafaeSMatthew G Knepley 3682c08575a3SMatthew G. Knepley /*@ 3683c08575a3SMatthew G. Knepley DMPlexSetSubpointMap - Sets the DMLabel with point dimension as values 3684c08575a3SMatthew G. Knepley 3685c08575a3SMatthew G. Knepley Input Parameters: 3686c08575a3SMatthew G. Knepley + dm - The submesh DM 3687c08575a3SMatthew G. Knepley - subpointMap - The DMLabel of all the points from the original mesh in this submesh 3688c08575a3SMatthew G. Knepley 3689c08575a3SMatthew G. Knepley Note: Should normally not be called by the user, since it is set in DMPlexCreateSubmesh() 3690c08575a3SMatthew G. Knepley 3691c08575a3SMatthew G. Knepley Level: developer 3692c08575a3SMatthew G. Knepley 3693*97d8846cSMatthew Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointIS() 3694c08575a3SMatthew G. Knepley @*/ 3695e6ccafaeSMatthew G Knepley PetscErrorCode DMPlexSetSubpointMap(DM dm, DMLabel subpointMap) 3696e6ccafaeSMatthew G Knepley { 3697e6ccafaeSMatthew G Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3698285d324eSMatthew G. Knepley DMLabel tmp; 3699e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 3700e6ccafaeSMatthew G Knepley 3701e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3702e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3703285d324eSMatthew G. Knepley tmp = mesh->subpointMap; 3704e6ccafaeSMatthew G Knepley mesh->subpointMap = subpointMap; 3705d67d17b1SMatthew G. Knepley ierr = PetscObjectReference((PetscObject) mesh->subpointMap);CHKERRQ(ierr); 3706285d324eSMatthew G. Knepley ierr = DMLabelDestroy(&tmp);CHKERRQ(ierr); 3707e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3708e6ccafaeSMatthew G Knepley } 3709e6ccafaeSMatthew G Knepley 3710*97d8846cSMatthew Knepley static PetscErrorCode DMPlexCreateSubpointIS_Internal(DM dm, IS *subpointIS) 3711*97d8846cSMatthew Knepley { 3712*97d8846cSMatthew Knepley DMLabel spmap; 3713*97d8846cSMatthew Knepley PetscInt depth, d; 3714*97d8846cSMatthew Knepley PetscErrorCode ierr; 3715*97d8846cSMatthew Knepley 3716*97d8846cSMatthew Knepley PetscFunctionBegin; 3717*97d8846cSMatthew Knepley ierr = DMPlexGetSubpointMap(dm, &spmap);CHKERRQ(ierr); 3718*97d8846cSMatthew Knepley ierr = DMPlexGetDepth(dm, &depth);CHKERRQ(ierr); 3719*97d8846cSMatthew Knepley if (spmap && depth >= 0) { 3720*97d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3721*97d8846cSMatthew Knepley PetscInt *points, *depths; 3722*97d8846cSMatthew Knepley PetscInt pStart, pEnd, p, off; 3723*97d8846cSMatthew Knepley 3724*97d8846cSMatthew Knepley ierr = DMPlexGetChart(dm, &pStart, &pEnd);CHKERRQ(ierr); 3725*97d8846cSMatthew Knepley if (pStart) SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Submeshes must start the point numbering at 0, not %d", pStart); 3726*97d8846cSMatthew Knepley ierr = PetscMalloc1(pEnd, &points);CHKERRQ(ierr); 3727*97d8846cSMatthew Knepley ierr = DMGetWorkArray(dm, depth+1, MPIU_INT, &depths);CHKERRQ(ierr); 3728*97d8846cSMatthew Knepley depths[0] = depth; 3729*97d8846cSMatthew Knepley depths[1] = 0; 3730*97d8846cSMatthew Knepley for(d = 2; d <= depth; ++d) {depths[d] = depth+1 - d;} 3731*97d8846cSMatthew Knepley for(d = 0, off = 0; d <= depth; ++d) { 3732*97d8846cSMatthew Knepley const PetscInt dep = depths[d]; 3733*97d8846cSMatthew Knepley PetscInt depStart, depEnd, n; 3734*97d8846cSMatthew Knepley 3735*97d8846cSMatthew Knepley ierr = DMPlexGetDepthStratum(dm, dep, &depStart, &depEnd);CHKERRQ(ierr); 3736*97d8846cSMatthew Knepley ierr = DMLabelGetStratumSize(spmap, dep, &n);CHKERRQ(ierr); 3737*97d8846cSMatthew Knepley if (((d < 2) && (depth > 1)) || (d == 1)) { /* Only check vertices and cells for now since the map is broken for others */ 3738*97d8846cSMatthew Knepley if (n != depEnd-depStart) SETERRQ3(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d at depth %d should be %d", n, dep, depEnd-depStart); 3739*97d8846cSMatthew Knepley } else { 3740*97d8846cSMatthew Knepley if (!n) { 3741*97d8846cSMatthew Knepley if (d == 0) { 3742*97d8846cSMatthew Knepley /* Missing cells */ 3743*97d8846cSMatthew Knepley for(p = 0; p < depEnd-depStart; ++p, ++off) points[off] = -1; 3744*97d8846cSMatthew Knepley } else { 3745*97d8846cSMatthew Knepley /* Missing faces */ 3746*97d8846cSMatthew Knepley for(p = 0; p < depEnd-depStart; ++p, ++off) points[off] = PETSC_MAX_INT; 3747*97d8846cSMatthew Knepley } 3748*97d8846cSMatthew Knepley } 3749*97d8846cSMatthew Knepley } 3750*97d8846cSMatthew Knepley if (n) { 3751*97d8846cSMatthew Knepley IS is; 3752*97d8846cSMatthew Knepley const PetscInt *opoints; 3753*97d8846cSMatthew Knepley 3754*97d8846cSMatthew Knepley ierr = DMLabelGetStratumIS(spmap, dep, &is);CHKERRQ(ierr); 3755*97d8846cSMatthew Knepley ierr = ISGetIndices(is, &opoints);CHKERRQ(ierr); 3756*97d8846cSMatthew Knepley for(p = 0; p < n; ++p, ++off) points[off] = opoints[p]; 3757*97d8846cSMatthew Knepley ierr = ISRestoreIndices(is, &opoints);CHKERRQ(ierr); 3758*97d8846cSMatthew Knepley ierr = ISDestroy(&is);CHKERRQ(ierr); 3759*97d8846cSMatthew Knepley } 3760*97d8846cSMatthew Knepley } 3761*97d8846cSMatthew Knepley ierr = DMRestoreWorkArray(dm, depth+1, MPIU_INT, &depths);CHKERRQ(ierr); 3762*97d8846cSMatthew Knepley if (off != pEnd) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "The number of mapped submesh points %d should be %d", off, pEnd); 3763*97d8846cSMatthew Knepley ierr = ISCreateGeneral(PETSC_COMM_SELF, pEnd, points, PETSC_OWN_POINTER, subpointIS);CHKERRQ(ierr); 3764*97d8846cSMatthew Knepley ierr = PetscObjectStateGet((PetscObject) spmap, &mesh->subpointState);CHKERRQ(ierr); 3765*97d8846cSMatthew Knepley } 3766*97d8846cSMatthew Knepley PetscFunctionReturn(0); 3767*97d8846cSMatthew Knepley } 3768*97d8846cSMatthew Knepley 376964beef6dSMatthew G. Knepley /*@ 3770*97d8846cSMatthew Knepley DMPlexGetSubpointIS - Returns an IS covering the entire subdm chart with the original points as data 3771e6ccafaeSMatthew G Knepley 3772e6ccafaeSMatthew G Knepley Input Parameter: 3773e6ccafaeSMatthew G Knepley . dm - The submesh DM 3774e6ccafaeSMatthew G Knepley 3775e6ccafaeSMatthew G Knepley Output Parameter: 37760298fd71SBarry Smith . subpointIS - The IS of all the points from the original mesh in this submesh, or NULL if this is not a submesh 3777e6ccafaeSMatthew G Knepley 37783982b651SMatthew G. Knepley Note: This IS is guaranteed to be sorted by the construction of the submesh 377964beef6dSMatthew G. Knepley 378064beef6dSMatthew G. Knepley Level: developer 378164beef6dSMatthew G. Knepley 378264beef6dSMatthew G. Knepley .seealso: DMPlexCreateSubmesh(), DMPlexGetSubpointMap() 378364beef6dSMatthew G. Knepley @*/ 3784*97d8846cSMatthew Knepley PetscErrorCode DMPlexGetSubpointIS(DM dm, IS *subpointIS) 3785e6ccafaeSMatthew G Knepley { 3786*97d8846cSMatthew Knepley DM_Plex *mesh = (DM_Plex *) dm->data; 3787*97d8846cSMatthew Knepley DMLabel spmap; 3788*97d8846cSMatthew Knepley PetscObjectState state; 3789e6ccafaeSMatthew G Knepley PetscErrorCode ierr; 3790e6ccafaeSMatthew G Knepley 3791e6ccafaeSMatthew G Knepley PetscFunctionBegin; 3792e6ccafaeSMatthew G Knepley PetscValidHeaderSpecific(dm, DM_CLASSID, 1); 3793e6ccafaeSMatthew G Knepley PetscValidPointer(subpointIS, 2); 3794*97d8846cSMatthew Knepley ierr = DMPlexGetSubpointMap(dm, &spmap);CHKERRQ(ierr); 3795*97d8846cSMatthew Knepley ierr = PetscObjectStateGet((PetscObject) spmap, &state);CHKERRQ(ierr); 3796*97d8846cSMatthew Knepley if (state != mesh->subpointState || !mesh->subpointIS) {ierr = DMPlexCreateSubpointIS_Internal(dm, &mesh->subpointIS);CHKERRQ(ierr);} 3797*97d8846cSMatthew Knepley *subpointIS = mesh->subpointIS; 3798e6ccafaeSMatthew G Knepley PetscFunctionReturn(0); 3799e6ccafaeSMatthew G Knepley } 3800559a1558SMatthew G. Knepley 3801559a1558SMatthew G. Knepley /*@ 3802a6e0b375SMatthew G. Knepley DMGetEnclosureRelation - Get the relationship between dmA and dmB 3803559a1558SMatthew G. Knepley 3804559a1558SMatthew G. Knepley Input Parameters: 3805a6e0b375SMatthew G. Knepley + dmA - The first DM 3806a6e0b375SMatthew G. Knepley - dmB - The second DM 3807559a1558SMatthew G. Knepley 3808559a1558SMatthew G. Knepley Output Parameter: 3809a6e0b375SMatthew G. Knepley . rel - The relation of dmA to dmB 3810559a1558SMatthew G. Knepley 3811a6e0b375SMatthew G. Knepley Level: intermediate 3812559a1558SMatthew G. Knepley 3813a6e0b375SMatthew G. Knepley .seealso: DMPlexGetEnclosurePoint() 3814559a1558SMatthew G. Knepley @*/ 3815a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosureRelation(DM dmA, DM dmB, DMEnclosureType *rel) 3816559a1558SMatthew G. Knepley { 3817a6e0b375SMatthew G. Knepley DM plexA, plexB, sdm; 3818559a1558SMatthew G. Knepley DMLabel spmap; 3819a6e0b375SMatthew G. Knepley PetscInt pStartA, pEndA, pStartB, pEndB, NpA, NpB; 3820559a1558SMatthew G. Knepley PetscErrorCode ierr; 3821559a1558SMatthew G. Knepley 382244171101SMatthew G. Knepley PetscFunctionBegin; 3823a6e0b375SMatthew G. Knepley PetscValidPointer(rel, 3); 3824a6e0b375SMatthew G. Knepley *rel = DM_ENC_NONE; 3825a6e0b375SMatthew G. Knepley if (!dmA || !dmB) PetscFunctionReturn(0); 3826a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmA, DM_CLASSID, 1); 3827a6e0b375SMatthew G. Knepley PetscValidHeaderSpecific(dmB, DM_CLASSID, 1); 3828a6e0b375SMatthew G. Knepley if (dmA == dmB) {*rel = DM_ENC_EQUALITY; PetscFunctionReturn(0);} 3829a6e0b375SMatthew G. Knepley ierr = DMConvert(dmA, DMPLEX, &plexA);CHKERRQ(ierr); 3830a6e0b375SMatthew G. Knepley ierr = DMConvert(dmB, DMPLEX, &plexB);CHKERRQ(ierr); 3831a6e0b375SMatthew G. Knepley ierr = DMPlexGetChart(plexA, &pStartA, &pEndA);CHKERRQ(ierr); 3832a6e0b375SMatthew G. Knepley ierr = DMPlexGetChart(plexB, &pStartB, &pEndB);CHKERRQ(ierr); 3833a6e0b375SMatthew G. Knepley /* Assumption 1: subDMs have smaller charts than the DMs that they originate from 3834a6e0b375SMatthew G. Knepley - The degenerate case of a subdomain which includes all of the domain on some process can be treated as equality */ 3835a6e0b375SMatthew G. Knepley if ((pStartA == pStartB) && (pEndA == pEndB)) { 3836a6e0b375SMatthew G. Knepley *rel = DM_ENC_EQUALITY; 3837a6e0b375SMatthew G. Knepley goto end; 3838559a1558SMatthew G. Knepley } 3839a6e0b375SMatthew G. Knepley NpA = pEndA - pStartA; 3840a6e0b375SMatthew G. Knepley NpB = pEndB - pStartB; 3841a6e0b375SMatthew G. Knepley if (NpA == NpB) goto end; 3842a6e0b375SMatthew G. Knepley sdm = NpA > NpB ? plexB : plexA; /* The other is the original, enclosing dm */ 3843a6e0b375SMatthew G. Knepley ierr = DMPlexGetSubpointMap(sdm, &spmap);CHKERRQ(ierr); 3844a6e0b375SMatthew G. Knepley if (!spmap) goto end; 3845a6e0b375SMatthew G. Knepley /* TODO Check the space mapped to by subpointMap is same size as dm */ 3846a6e0b375SMatthew G. Knepley if (NpA > NpB) { 3847a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUPERMESH; 3848a6e0b375SMatthew G. Knepley } else { 3849a6e0b375SMatthew G. Knepley *rel = DM_ENC_SUBMESH; 3850a6e0b375SMatthew G. Knepley } 3851a6e0b375SMatthew G. Knepley end: 3852a6e0b375SMatthew G. Knepley ierr = DMDestroy(&plexA);CHKERRQ(ierr); 3853a6e0b375SMatthew G. Knepley ierr = DMDestroy(&plexB);CHKERRQ(ierr); 3854559a1558SMatthew G. Knepley PetscFunctionReturn(0); 3855559a1558SMatthew G. Knepley } 385644171101SMatthew G. Knepley 385744171101SMatthew G. Knepley /*@ 3858a6e0b375SMatthew G. Knepley DMGetEnclosurePoint - Get the point pA in dmA which corresponds to the point pB in dmB 385944171101SMatthew G. Knepley 386044171101SMatthew G. Knepley Input Parameters: 3861a6e0b375SMatthew G. Knepley + dmA - The first DM 3862a6e0b375SMatthew G. Knepley . dmB - The second DM 3863a6e0b375SMatthew G. Knepley . etype - The type of enclosure relation that dmA has to dmB 3864a6e0b375SMatthew G. Knepley - pB - A point of dmB 386544171101SMatthew G. Knepley 386644171101SMatthew G. Knepley Output Parameter: 3867a6e0b375SMatthew G. Knepley . pA - The corresponding point of dmA 386844171101SMatthew G. Knepley 3869a6e0b375SMatthew G. Knepley Level: intermediate 387044171101SMatthew G. Knepley 3871a6e0b375SMatthew G. Knepley .seealso: DMGetEnclosureRelation() 387244171101SMatthew G. Knepley @*/ 3873a6e0b375SMatthew G. Knepley PetscErrorCode DMGetEnclosurePoint(DM dmA, DM dmB, DMEnclosureType etype, PetscInt pB, PetscInt *pA) 387444171101SMatthew G. Knepley { 3875a6e0b375SMatthew G. Knepley DM sdm; 3876a6e0b375SMatthew G. Knepley IS subpointIS; 3877a6e0b375SMatthew G. Knepley const PetscInt *subpoints; 3878a6e0b375SMatthew G. Knepley PetscInt numSubpoints; 387944171101SMatthew G. Knepley PetscErrorCode ierr; 388044171101SMatthew G. Knepley 388144171101SMatthew G. Knepley PetscFunctionBegin; 3882a6e0b375SMatthew G. Knepley /* TODO Cache the IS, making it look like an index */ 3883a6e0b375SMatthew G. Knepley switch (etype) { 3884a6e0b375SMatthew G. Knepley case DM_ENC_SUPERMESH: 3885a6e0b375SMatthew G. Knepley sdm = dmB; 3886*97d8846cSMatthew Knepley ierr = DMPlexGetSubpointIS(sdm, &subpointIS);CHKERRQ(ierr); 3887a6e0b375SMatthew G. Knepley ierr = ISGetIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3888a6e0b375SMatthew G. Knepley *pA = subpoints[pB]; 3889a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3890a6e0b375SMatthew G. Knepley break; 3891a6e0b375SMatthew G. Knepley case DM_ENC_SUBMESH: 3892a6e0b375SMatthew G. Knepley sdm = dmA; 3893*97d8846cSMatthew Knepley ierr = DMPlexGetSubpointIS(sdm, &subpointIS);CHKERRQ(ierr); 3894a6e0b375SMatthew G. Knepley ierr = ISGetLocalSize(subpointIS, &numSubpoints);CHKERRQ(ierr); 3895a6e0b375SMatthew G. Knepley ierr = ISGetIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3896a6e0b375SMatthew G. Knepley ierr = PetscFindInt(pB, numSubpoints, subpoints, pA);CHKERRQ(ierr); 3897a6e0b375SMatthew G. Knepley if (*pA < 0) { 3898a6e0b375SMatthew G. Knepley ierr = DMViewFromOptions(dmA, NULL, "-dm_enc_A_view");CHKERRQ(ierr); 3899a6e0b375SMatthew G. Knepley ierr = DMViewFromOptions(dmB, NULL, "-dm_enc_B_view");CHKERRQ(ierr); 3900a6e0b375SMatthew G. Knepley SETERRQ1(PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Point %d not found in submesh", pB); 3901a6e0b375SMatthew G. Knepley } 3902a6e0b375SMatthew G. Knepley ierr = ISRestoreIndices(subpointIS, &subpoints);CHKERRQ(ierr); 3903a6e0b375SMatthew G. Knepley break; 3904a6e0b375SMatthew G. Knepley case DM_ENC_EQUALITY: 3905a6e0b375SMatthew G. Knepley case DM_ENC_NONE: 3906a6e0b375SMatthew G. Knepley *pA = pB;break; 3907a6e0b375SMatthew G. Knepley case DM_ENC_UNKNOWN: 3908a6e0b375SMatthew G. Knepley { 3909a6e0b375SMatthew G. Knepley DMEnclosureType enc; 391044171101SMatthew G. Knepley 3911a6e0b375SMatthew G. Knepley ierr = DMGetEnclosureRelation(dmA, dmB, &enc);CHKERRQ(ierr); 3912a6e0b375SMatthew G. Knepley ierr = DMGetEnclosurePoint(dmA, dmB, enc, pB, pA);CHKERRQ(ierr); 3913a6e0b375SMatthew G. Knepley } 3914a6e0b375SMatthew G. Knepley break; 3915a6e0b375SMatthew G. Knepley default: SETERRQ1(PetscObjectComm((PetscObject) dmA), PETSC_ERR_ARG_OUTOFRANGE, "Invalid enclosure type %d", (int) etype); 391644171101SMatthew G. Knepley } 391744171101SMatthew G. Knepley PetscFunctionReturn(0); 391844171101SMatthew G. Knepley } 3919