Merge MR !129, 'jrwrigh/fix_monitor_cfl', into 'main'

fix(monitor_cfl): Give correctly sized QFCtx for advection case

See merge request phypid/honee!129

fix(monitor_cfl): Give correctly sized QFCtx for advection case

When the problem type is the advection-diffusion equations,
`MonitorCFL()` would interpret the QFunction context as
`NewtonianIdealGas

fix(monitor_cfl): Give correctly sized QFCtx for advection case

When the problem type is the advection-diffusion equations,
`MonitorCFL()` would interpret the QFunction context as
`NewtonianIdealGasContext`. This is functionally ok only if it is zero.
Otherwise this could lead to OOB memory access. The only
reason it hadn't up till now is that the members of
`NewtonianIdealGasContext` that were used by `StateFromQ()` were within
the memory bounds of `AdvectionContext`.

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Merge MR !122, 'jrwrigh/honee_petscobject', into 'main'

feat: Convert Honee to PetscObject, remove auxillary structs

See merge request phypid/honee!122

feat: Add Honee{Get,Set,Has}Container functions

This embeds some helpful checks into the container additions

refactor: Remove Print functions from navierstokes.h

refactor: Remove unused function signatures from navierstokes.h

feat: Move smartsim into Honee container

Merge MR !127, 'jrwrigh/matceed-sync', into 'main'

feat(matceed): Update matceed from Ratel updates

See merge request phypid/honee!127

feat(matceed): Update matceed from Ratel updates

Mostly adding in `MatGetCurrentMemType()` and a slight rearrangement of
how FLOPs are logged.

See Ratel !1149 and !1139

Merge MR !126, 'jrwrigh/git_describe_safedir', into 'main'

chore: Set safe.directory for git describe

See merge request phypid/honee!126

chore: Set safe.directory for git describe

style(smartsim): Move functions around

feat: Move differential filtering into separate header

feat: Remove diff_filter struct from Honee

style: Change qfctx -> ctx in SGS DD Training

feat: Move sgs_dd_train into Honee container

feat: Move sgs_dd_data into Honee container

feat: Move grad_velo_proj into Honee container

feat: Make NodalProjectionDataDestroy use pointer argument

This to align with `PetscCtxDestroyFn` signature

feat: Convert HONEE to PetscObject

Merge MR !125, 'jrwrigh/fix_qf_char_arrays', into 'main'

fix: Move enum strings to compilation units

See merge request phypid/honee!125

fix: Move enum strings to compilation units

Merge MR !124, 'jrwrigh/fix_petsc_breakage', into 'main'

fix: Latest PETSc changed `DMSetCoordinateDisc()` signature

See merge request phypid/honee!124

fix: Latest PETSc changed `DMSetCoordinateDisc()` signature

Changed in petsc!8353

Merge MR !123, 'jrwrigh/qf_char_arrays', into 'main'

feat: Move PetscOptionEnum char arrays to enum defs in QF files

See merge request phypid/honee!123