| 7b63f5c6 | 19-Jun-2022 |
Jed Brown <jed@jedbrown.org> |
CeedOperatorAssemblePointBlockDiagonal: fix restriction sizes for subdomain integrals
Formerly would give errors such as
interface/ceed-elemrestriction.c:862 in CeedElemRestrictionApply(): Output v
CeedOperatorAssemblePointBlockDiagonal: fix restriction sizes for subdomain integrals
Formerly would give errors such as
interface/ceed-elemrestriction.c:862 in CeedElemRestrictionApply(): Output vector size 125050 not compatible with element restriction (124050, 6000)
(noted in https://github.com/CEED/libCEED/pull/994#discussion_r899808040)
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| ba6664ae | 22-May-2022 |
James Wright <james@jameswright.xyz> |
Fluids - Add STG inflow (#868)
* doc(fluids): Add STG equations
* doc(fluids): Add basic data flow for STG
* doc(fluids): Add Shur et al. 2014 STG paper to bib
* doc(fluids): Specify STG in
Fluids - Add STG inflow (#868)
* doc(fluids): Add STG equations
* doc(fluids): Add basic data flow for STG
* doc(fluids): Add Shur et al. 2014 STG paper to bib
* doc(fluids): Specify STG inputs files, misc additions
* doc(fluids): Add intro for STG section
* fix(fluids): Add #include ceed.h for qfunctions
- In the spirit of "include what you use"
* feat(fluids): Start work on stg_shur14.h
* doc-fix: Correct kappa_min definition
* Move STG setup functions to problems/stg_shur14
* feat: Add cholesky decomposition function
* fix: Correct stg_ctx malloc, reorganize creation
Co-authored-by: Jed Brown <jed@jedbrown.org>
* fix(fluids): Correct return values of functions
* style: Fix up style
* feat(fluids): Get file paths from PetscOptions
- Also convert SetupSTGContext to return PetscErrorCode
* fix(fluids): Correct stg_ctx dereferencing
- Also move to size_t for type of the offsets
* feat(fluids): Add funcs for processing STG*.dat files
* feat(fluids): Move to PetscOptions* for STG flags
* feat: Use `PetscMax` instead of macro
* fix(fluids): Correct/Refactor file reading functions
- Move to `PetscSynchronizedFGets`
- Remove `inline`
- Pass `comm` between functions
- Add `OpenPHASTADatFile` to DRY
* docs(fluids): Fix equation typo
* fix(fluids): Correct calculation of kappa
* feat(fluids): Complete STGShur14_Calc
* feat(fluids): Add InterpolateProfile helper func
* feat(fluids): Add CalcSpectrum helper func
* feat(fluids): Add to STGShur14_Calc qfunction
* fix: Add M_PI, Update SETERRQ functions
- Also update style
* fix: Correct interpolation outside of datarange
* fix: Add missing definition for ke in CalcSpectrum
* feat: Migrate context and func signatures, Misc
- Create SetupSTGContext to be run in another Setup_____Context
function
- Migrate STGShur14Context, CreateSTGContext, and SetupSTGContext
signatures to navierstokes.h
- Add STG contexts to Physics and CeedData
- Add missing CHKERRQ to PetscFClose
- Move to SPDX license headers
* examples/fluids: Pass solution time via context label
* feat: Implement STG boundary integral
- Add theta0 and implicit members to STGShur14Context
- Tested via implementation to the blasius BL problem (though this will
probably go against the code history)
* feat: Fix STG Stuff
* feat: Implement STG inflow for blasius BL
- Note that fluctuations are turned off in this case
* examples/fluids: Add stg_mean_only flag
* examples/fluids: Check cholesky decomp for nans
- Also correct locaiton of cholesky decomposition in ReadSTGInflow()
* examples/fluids: Correct STG documentation
- Missing a 2 sqrt(3/2) factor and didn't take square root of q
* examples/fluids: Fix STGShur14_Calc
- Given the calculated spectrum, calculation of v' and u' verified
against python implementation (which was validated previously against
PHASTA)
* examples/fluids: Calc dXdx for boundary QFunctions
- Also calculate h from the dXdx in STGShur14_Inflow
- Replace h[0] result with constant dx spacing
* examples/fluids: Fix STG Spectra calcualtion
* examples/fluids: Fix build errors
- Ran into an include cycle collision that resulted in over-defining
SetupContext in advection.c
- newtonian_types.h (which has SetupContext defined) ->
stg_shur14_type.h -> navierstokes.h -> advection.c
* examples/fluids: Update and fix documentation
* examples/fluids: Correct dXdx comment, leave TODO
Co-authored-by: Jed Brown <jed@jedbrown.org>
* examples/fluids: Minor bib citation edits
Co-authored-by: Jed Brown <jed@jedbrown.org>
* examples/fluids: Add STGInflow.dat, fix blasius.yaml
* examples/fluids: int -> PetscInt | CeedInt
* examples/fluids: Style
* examples/fluids: Make Boolean names verb_noun format
- Also changes the stg flag to `-stg_use`
* examples/fluids: Add STG test
* examples/fluids: Style fix up
* examples/fluids: Update docs
* examples/fluids: Implement weakT option for STG
* examples/fluids: Fix casting for ROCm
* examples/fluids: avoid PETSc dependency in qfunctions
* examples/fluids: header cleanup
* backends/hip: avoid redundant inline
* examples/fluids: avoid VLA in qfunctions
GPUs don't like VLA and some compilers reject it when targeting GPUs.
* examples/fluids: Create STG_NMODES_MAX
* examples/fluids: Refactor stg setup out of blasius.c
* examples/fluids: Fix misc GPU bugs
Co-authored-by: Jed Brown <jed@jedbrown.org>
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| 019b7682 | 05-May-2022 |
Timothy Aiken <55306867+tt-aiken@users.noreply.github.com> |
Shock Tube + YZB Discontinuity Capturing (#851)
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the
Shock Tube + YZB Discontinuity Capturing (#851)
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Changed variable name midpt to mid_point, removed redundant slip BC declarations.
* Fixed style error, made variable names clearer, and removed dead code.
* Missed a style fix
* Rebased with main
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Fixed style error, made variable names clearer, and removed dead code.
* Missed a style fix
* Implemented fixes to the flux jacobians
* Updated documentation, tau definition in SU, and recommended fixes to the flux Jacobian.
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Missed a style fix
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Fixes to style and documentation.
* Fixing unnecessary problem->dim declaration and missing field in comment describing initial condition density.
* Added warnings for incompatible user input combinations.
* Added comments on beta to documentation, fixed j_gradn style issues.
* Compilation errors on my end. Committing to see if it's local or not.
* Style fixes
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Changed variable name midpt to mid_point, removed redundant slip BC declarations.
* Fixed style error, made variable names clearer, and removed dead code.
* Missed a style fix
* Rebased with main
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Fixed style error, made variable names clearer, and removed dead code.
* Missed a style fix
* Implemented fixes to the flux jacobians
* Updated documentation, tau definition in SU, and recommended fixes to the flux Jacobian.
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Missed a style fix
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Fixes to style and documentation.
* Fixing unnecessary problem->dim declaration and missing field in comment describing initial condition density.
* Added warnings for incompatible user input combinations.
* Added comments on beta to documentation, fixed j_gradn style issues.
* Compilation errors on my end. Committing to see if it's local or not.
* Fluids: SETERRQ1 -> SETERRQ to be compatible with PETSc 3.17
* Fluids - Update shock-tube with #881
* Small fix to mid_point definition and removed repeat entries for Shock Tube problem in README.md.
* Including test output.
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Changed variable name midpt to mid_point, removed redundant slip BC declarations.
* Fixed style error, made variable names clearer, and removed dead code.
* Missed a style fix
* Rebased with main
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Fixed style error, made variable names clearer, and removed dead code.
* Missed a style fix
* Implemented fixes to the flux jacobians
* Updated documentation, tau definition in SU, and recommended fixes to the flux Jacobian.
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Missed a style fix
* Implemented the Sod Shock Tube problem with YZB discontinuity capturing. for the explicit formulation. SU stabilization is also implemented for the explicit formulation.
* Fixes to style and documentation.
* Fixing unnecessary problem->dim declaration and missing field in comment describing initial condition density.
* Added warnings for incompatible user input combinations.
* Added comments on beta to documentation, fixed j_gradn style issues.
* Compilation errors on my end. Committing to see if it's local or not.
* Fluids: SETERRQ1 -> SETERRQ to be compatible with PETSc 3.17
* Fluids - Update shock-tube with #881
* Fluids - added test output file for shocktube
* Small fix to mid_point definition and removed repeat entries for Shock Tube problem in README.md.
* Including test output.
* Update doc/sphinx/source/references.bib
Co-authored-by: Jed Brown <jed@jedbrown.org>
* Update examples/fluids/README.md
Co-authored-by: Jed Brown <jed@jedbrown.org>
* Update examples/fluids/index.md
Co-authored-by: Jed Brown <jed@jedbrown.org>
* Update examples/fluids/navierstokes.h
Co-authored-by: Jed Brown <jed@jedbrown.org>
* Update examples/fluids/problems/shocktube.c
Co-authored-by: Jed Brown <jed@jedbrown.org>
* Update examples/fluids/qfunctions/shocktube.h
Co-authored-by: Jed Brown <jed@jedbrown.org>
* Removed unused IFunction
* Added shocktube variables to SetupContext in advection.h, advection2d.h, and densitycurrent.h
* Missed some merge conflicts that have now been cleared up.
* Added helper function for covariant element length along a given vector.
* Added SetupContext to shocktube.h
* Fix to regression test path
* remove variable transpose of the Jacobian
* Fix index swap in implicit SUPG
* examples/fluids shocktube: fix stab summation and transpose
* delete IFunction
* example/fluids- updates reference solution
Co-authored-by: Timothy Aiken <timothyaiken@Timothys-MacBook-Pro.local>
Co-authored-by: Timothy Aiken <timothyaiken@cu-biot-10-10.203.167.69.int.colorado.edu>
Co-authored-by: Leila Ghaffari <Leila.Ghaffari@colorado.edu>
Co-authored-by: Jed Brown <jed@jedbrown.org>
Co-authored-by: Timothy Aiken <timothyaiken@cu-genvpn-tcom-10.180.164.177.int.colorado.edu>
Co-authored-by: AdelekeBankole <adeleke.bankole@colorado.edu>
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