History log of /libCEED/examples/fluids/ (Results 851 – 875 of 875)
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84f4e65d28-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

NS: Add multiple test runs

These minimal tests test different configurations: the explicit formulation with default (RKF45), the implicit formulation with alpha method, and the implicit formulation

NS: Add multiple test runs

These minimal tests test different configurations: the explicit formulation with default (RKF45), the implicit formulation with alpha method, and the implicit formulation with alpha method + supg stabilization

show more ...

07af606924-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

NS: Default BCs are free-slip on all faces

If no boundary conditions are set at command line, there will be free-slip boundary conditions on velocity components on all faces

The use still has the p

NS: Default BCs are free-slip on all faces

If no boundary conditions are set at command line, there will be free-slip boundary conditions on velocity components on all faces

The use still has the possibility of imposing wall boundary conditions (which sets all three components of velocity to homogeneous Dirichelet condition)

If the user specify both conditions, slip and wall, on the same face sets, the program will error

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c063f47622-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

NS: Style and comments

ff62f74022-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

NS: Remove periodicity option

This option is temporarily removed since it is currently broken

40c555b922-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

NS: Add warning if CtauS is used without stabilization

35d2ed1b22-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

NS: Patch on BCs for different problem types and update docs

8c66223122-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

NS: Add warning if stabilization is used with explicit time integrators

380e0a5821-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

NS: Remove unused variables and some code cleanups and clarifications

32ed2d1116-Apr-2020 Jed Brown <jed@jedbrown.org>

fluids: fix missing CHKERRQ

7590432904-May-2020 valeriabarra <valeriabarra21@gmail.com>

NS solver: remove stray restrictxcoord restriction


/libCEED/Doxyfile
/libCEED/Makefile
/libCEED/backends/blocked/ceed-blocked-operator.c
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator-build.cpp
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator.c
/libCEED/backends/cuda-gen/ceed-cuda-gen-qfunction.c
/libCEED/backends/cuda-gen/ceed-cuda-gen.c
/libCEED/backends/cuda-reg/ceed-cuda-reg-basis.c
/libCEED/backends/cuda-reg/ceed-cuda-reg-restriction.c
/libCEED/backends/cuda-reg/ceed-cuda-reg.c
/libCEED/backends/cuda-reg/cuda-reg-basis.cu
/libCEED/backends/cuda-shared/ceed-cuda-shared-basis.c
/libCEED/backends/cuda-shared/ceed-cuda-shared.c
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/libCEED/backends/cuda/ceed-cuda-qfunction-load.cpp
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/libCEED/backends/cuda/ceed-cuda.c
/libCEED/backends/cuda/cuda-vector.cu
/libCEED/backends/magma/ceed-magma-restriction.c
/libCEED/backends/magma/ceed-magma.h
/libCEED/backends/magma/magma_drestrictApply.cu
/libCEED/backends/occa/ceed-occa-basis.c
/libCEED/backends/opt/ceed-opt-operator.c
/libCEED/backends/ref/ceed-ref-basis.c
/libCEED/backends/ref/ceed-ref-operator.c
/libCEED/backends/ref/ceed-ref-restriction.c
/libCEED/backends/ref/ceed-ref.h
/libCEED/doc/sphinx/requirements.txt
/libCEED/doc/sphinx/source/api/CeedElemRestriction.rst
/libCEED/doc/sphinx/source/conf.py
/libCEED/doc/sphinx/source/index.rst
/libCEED/doc/sphinx/source/releasenotes.rst
navierstokes.c
/libCEED/examples/nek/bps/bps.h
/libCEED/examples/petsc/qfunctions/bps/common.h
/libCEED/examples/petsc/setup.h
/libCEED/examples/petsc/setupsphere.h
/libCEED/examples/solids/src/misc.c
/libCEED/examples/solids/src/setuplibceed.c
/libCEED/include/ceed-backend.h
/libCEED/include/ceed-impl.h
/libCEED/include/ceed.h
/libCEED/include/ceedf.h
/libCEED/interface/ceed-basis.c
/libCEED/interface/ceed-elemrestriction.c
/libCEED/interface/ceed-operator.c
/libCEED/interface/ceed-qfunction.c
/libCEED/interface/ceed-vector.c
/libCEED/interface/ceed.c
/libCEED/tests/junit.py
/libCEED/tests/t214-elemrestriction.c
/libCEED/tests/t215-elemrestriction.c
/libCEED/tests/tap.sh
ec9acdb821-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

NS: Use non_zero_time=false for problem type avection

Since exact solution and error calculation is not currently provided for the 3D advection case, this flag should be set to false for now

With n

NS: Use non_zero_time=false for problem type avection

Since exact solution and error calculation is not currently provided for the 3D advection case, this flag should be set to false for now

With non_zero_time=true the program was always reporting Max Error: 0. for problem type advection

show more ...

27dd567e21-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

NS: Rename ICs_PetscMultiplicity() -> ICs_FixMultiplicity()

The name ICs_PetscMultiplicity was misleading, since the multiplicity is not related to PETSc

357222b321-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

NS: Fix memory leak

Reported-by @jedbrown

8142698021-Apr-2020 jeremylt <jeremy.thompson@colorado.edu>

Fluids - fix omitted indices correction in fluids version of CreateRestrictionFromPlex

d979a05114-Apr-2020 jeremylt <jeremy.thompson@colorado.edu>

Restriction - convert restiction to use offsets instead of interlace mode. CPU and Python impl only, CUDA and MAGMA left to do.


/libCEED/.travis.yml
/libCEED/backends/blocked/ceed-blocked-operator.c
/libCEED/backends/occa/ceed-occa-restrict.c
/libCEED/backends/occa/ceed-occa-restrict.okl
/libCEED/backends/opt/ceed-opt-operator.c
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/libCEED/examples/ceed/ex2-surface.c
navierstokes.c
/libCEED/examples/mfem/bp1.hpp
/libCEED/examples/mfem/bp3.hpp
/libCEED/examples/nek/bps/bps.usr
/libCEED/examples/petsc/area.c
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/libCEED/examples/solids/elasticity.c
/libCEED/examples/solids/elasticity.h
/libCEED/examples/solids/index.rst
/libCEED/examples/solids/qfunctions/constantForce.h
/libCEED/examples/solids/qfunctions/hyperFS.h
/libCEED/examples/solids/qfunctions/hyperSS.h
/libCEED/examples/solids/qfunctions/linElas.h
/libCEED/examples/solids/qfunctions/manufacturedForce.h
/libCEED/examples/solids/src/boundary.c
/libCEED/examples/solids/src/cloptions.c
/libCEED/examples/solids/src/matops.c
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/libCEED/tests/tap.sh
90c3b38a15-Apr-2020 Jed Brown <jed@jedbrown.org>

Merge pull request #511 from CEED/valeria/viz-refine

Add support for level of refinements for viz

ff6701fc12-Apr-2020 Jed Brown <jed@jedbrown.org>

fluids: fix -viz_refine by composing interpolation matrices

This also changes -petscspace_degree to -degree (using
PetscFECreateLagrange, which is now available).

Example parallel run with -viz_ref

fluids: fix -viz_refine by composing interpolation matrices

This also changes -petscspace_degree to -degree (using
PetscFECreateLagrange, which is now available).

Example parallel run with -viz_refine:

mpiexec -n 2 ./navierstokes -degree 3 -qextra 1 -problem density_current -dm_plex_box_faces 12,1,12 -lx 4000 -ly 200 -lz 4000 -bc_wall 1,2 -bc_slip_x 5,6 -bc_slip_y 3,4 -center 0,0,2000 -dc_axis 0,1,0 -ts_adapt_monitor -ts_adapt_safety 0.8 -implicit -pc_type bjacobi -stab supg -snes_atol 1e-3 -ksp_atol 1e-4 -ksp_rtol 1e-3 -ts_type alpha -ts_dt 5e-3 -ksp_type bcgs -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -viz_refine 2

show more ...

1392168511-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

Remove inclusion of ceed.h in examples/ header files

450bb77710-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

Make style

2e7702f510-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

Refactor wJ -> wdetJ in petsc/ and fluids/ examples

88c612bc10-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

Include ceed.h in examples/fluids header files

This avoid 'unknown type' warnings and is safe under the double inclusion guard


/libCEED/.readthedocs.yml
/libCEED/.travis.yml
/libCEED/Makefile
/libCEED/doc/sphinx/requirements.txt
/libCEED/doc/sphinx/source/conf.py
/libCEED/examples/ceed/ex1-volume.h
/libCEED/examples/ceed/ex2-surface.h
advection.h
advection2d.h
common.h
densitycurrent.h
/libCEED/examples/petsc/qfunctions/area/areacube.h
/libCEED/examples/petsc/qfunctions/area/areasphere.h
/libCEED/examples/petsc/qfunctions/bps/bp1.h
/libCEED/examples/petsc/qfunctions/bps/bp1sphere.h
/libCEED/examples/petsc/qfunctions/bps/bp2.h
/libCEED/examples/petsc/qfunctions/bps/bp2sphere.h
/libCEED/examples/petsc/qfunctions/bps/bp3.h
/libCEED/examples/petsc/qfunctions/bps/bp3sphere.h
/libCEED/examples/petsc/qfunctions/bps/bp4.h
/libCEED/examples/petsc/qfunctions/bps/bp4sphere.h
/libCEED/examples/petsc/qfunctions/bps/common.h
/libCEED/examples/petsc/setup.h
/libCEED/examples/petsc/setupsphere.h
/libCEED/examples/solids/Makefile
/libCEED/examples/solids/elasticity.c
/libCEED/examples/solids/qfunctions/hyperFS.h
/libCEED/examples/solids/src/cloptions.c
/libCEED/examples/solids/src/misc.c
/libCEED/examples/solids/src/setupdm.c
/libCEED/pyproject.toml
/libCEED/python/build_ceed_cffi.py
/libCEED/python/ceed.py
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/libCEED/python/ceed_constants.py
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/libCEED/python/ceed_operator.py
/libCEED/python/ceed_qfunction.py
/libCEED/python/ceed_vector.py
/libCEED/requirements-test.txt
/libCEED/setup.py
/libCEED/tests/python/buildmats.py
/libCEED/tests/python/check.py
/libCEED/tests/python/conftest.py
/libCEED/tests/python/setup-qfunctions.py
/libCEED/tests/python/test-0-ceed.py
/libCEED/tests/python/test-1-vector.py
/libCEED/tests/python/test-2-elemrestriction.py
/libCEED/tests/python/test-3-basis.py
/libCEED/tests/python/test-4-qfunction.py
/libCEED/tests/python/test-5-operator.py
cb3e268909-Apr-2020 valeriabarra <valeriabarra21@gmail.com>

Add support for level of refinements for viz

Now -viz_refine is not a PetscBool anymore, but a PetscInt

f6d735e906-Apr-2020 Valeria Barra <39932030+valeriabarra@users.noreply.github.com>

Small doc fixes (#499)

* A small shift in notation

* Docs: Clarify ex2-surface mathematical description

* Refactor \boldsymbol -> \bm

* Refactor \mathbf -> \bm

* Sphinx: clear html_stati

Small doc fixes (#499)

* A small shift in notation

* Docs: Clarify ex2-surface mathematical description

* Refactor \boldsymbol -> \bm

* Refactor \mathbf -> \bm

* Sphinx: clear html_static_path

This is needed to avoid the 'html_static_path entry '_static' does not exist' warning

https://github.com/readthedocs/readthedocs.org/issues/1776

* Fix some incosistencies

* Invert inner products (u,v) -> (v,u)

* Add SVG figure for coordinates on the sphere

* doc: use dirhtml on readthedocs

* Improve caption of sphere coords figure

* Add reference to figure in the bps on the cubed-sphere section

Co-authored-by: Jed Brown <jed@jedbrown.org>

show more ...


/libCEED/.readthedocs.yml
/libCEED/Doxyfile
/libCEED/Makefile
/libCEED/README.rst
/libCEED/backends/blocked/ceed-blocked-operator.c
/libCEED/backends/magma/gccm.py
/libCEED/backends/opt/ceed-opt-operator.c
/libCEED/backends/ref/ceed-ref-operator.c
/libCEED/backends/ref/ceed-ref-restriction.c
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index.rst
/libCEED/examples/notation.rst
/libCEED/examples/petsc/Makefile
/libCEED/examples/petsc/bps.c
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/libCEED/examples/tutorials/tutorial-1-vector.ipynb
/libCEED/examples/tutorials/tutorial-2-elemrestriction.ipynb
/libCEED/examples/tutorials/tutorial-3-basis.ipynb
/libCEED/examples/tutorials/tutorial-4-qfunction.ipynb
/libCEED/examples/tutorials/tutorial-5-operator.ipynb
/libCEED/examples/tutorials/tutorial-6-shell.ipynb
/libCEED/interface/ceed-basis.c
/libCEED/interface/ceed-operator.c
/libCEED/interface/ceed.c
/libCEED/python/README.md
/libCEED/python/ceed_basis.py
/libCEED/python/ceed_vector.py
/libCEED/tests/python/check.py
/libCEED/tests/python/conftest.py
/libCEED/tests/python/test-1-vector.py
/libCEED/tests/python/test-2-elemrestriction.py
/libCEED/tests/python/test-3-basis.py
/libCEED/tests/python/test-4-qfunction.py
/libCEED/tests/python/test-5-operator.py
/libCEED/tests/t506-operator-f.f90
843fcb4b27-Mar-2020 Jed Brown <jed@jedbrown.org>

make: support CEED_LDFLAGS for things like -dynamic on Cray

ccaff03026-Mar-2020 Jeremy L Thompson <25011573+jeremylt@users.noreply.github.com>

Solid Mechanics Example (#474)

libCEED + PETSc Solid Mechanics example

Co-authored-by: Jeremy L Thompson <jeremy.thompson@colorado.edu>
Co-authored-by: Arash Mehraban <arashm81@gmail.com>
Co-au

Solid Mechanics Example (#474)

libCEED + PETSc Solid Mechanics example

Co-authored-by: Jeremy L Thompson <jeremy.thompson@colorado.edu>
Co-authored-by: Arash Mehraban <arashm81@gmail.com>
Co-authored-by: Jed Brown <jed@jedbrown.org>
Co-authored-by: Valeria Barra <valeriabarra21@gmail.com>


* Solids - initial commit of elasticity example

Co-authored-by: Jeremy L Thompson <jeremy.thompson@colorado.edu>
Co-authored-by: Arash Mehraban <arashm81@gmail.com>

* Solids - add VLA macro

* Solids - fix test for mesh file output string

* Solids - update documentation

Co-authored-by: Jeremy L Thompson <jeremy.thompson@colorado.edu>
Co-authored-by: Arash Mehraban <arashm81@gmail.com>

* Solids - update README

* Solids - update ctx struct and casting for CUDA

* Tests - clean up test conditions for GPU backends

* GPU - fix falbacks identified

* CUDA - whitelist FDM Inverse

* make style

* doc: solids editing/correctness

* Solids - separate FE boilerplate into its own function

* Solids - clean up double includes

* doc: add more complete explanation of hyperelasticity and formulation

* Solids - Use ISGetSize for global number of face sets (had no effect on PETSc bug in MR 2615)

* edited docs for hyperFS

* Improve doc of solids example with some constitent notation and fonts

* HyperSS docs modified

* edited typo

* linearization added

* fixed a typo

* Improved doc

* doc: more writing on hyperelasticity and implementation tradeoffs

* Solids - fix typo

* Solids - compute and store C, Cinv, and S as symmetric

* Solids - use new Newton linearization, but its not converging

* Solids - update BC handling

* Solids - update README with new BC options

* removed old notation

* Solids - whitespace changes only in documentation

* doc: adjust differential notation and derive dP(dF)

* Solids - small documentation flow edits

* Solids - simplify setting BCs

* Solids - Symmetritize e in SS

* Solids - set more reasonable default number of steps for nonlinear

* Solids - fix documentation typo

* Solids - clean up computation of deltaS

* Solids - fix sample runs

* Solids - fix hyperSS jacobian

* Solids - fix hyperSS documentation

* Solids - clean up code for hyperSS

* Solids - add file and function docstrings

* doc: commutative diagram of linearization and stable stress expression

* Solids - update hyperSS documentation with linearization

* doc: further tips on stable computation

* Solids - fix typo with trace in hyperSS

* Solids - intro and hyperSS documentation updates

* Solids - update hyperFS for numerical stability with small E and nearly incompressible

* examples/solids: simpler C = I + 2E

* Solids - more compact/readable E computation

* Solids - minor style consistency change

* Solids - replace log1p with series approximation, log1p is not vectorized in libc

* Solids - refactor common components between hyperFSF and hyperFSdF

* examples/solids: use PETSc dependency flags for incremental rebuild

* examples/solids: extend range of log1p_series via shift/scale

* Solids - add bc_clamp_max option to specify maximum displacement for clamped boundary

* make style

* Solids - update with sample run informantion and spellchecking

* Doc - typo fixes

* Solids - homogonize presentation of command line options

* examples/solids: fix -Wmisleading-indentation

* examples/fluids: PETSc 3.13 compatibility

* examples/solids: use log1p for numerical stability in hyperSS

* doc: copy editing in examples/solids

* Solids - update documentation on running the code

* Solids - convert README to rst and include in documentation

* Solids - clean dependency file

* Solids - use log1p approximation in hyperSS as well

* Solids - update README to explain mms

* Solids - switch range on hyperSS log1p series approximation

* Solids - update README to clarify mandatory options

* Solids - add link to sample meshes

* Solids - simplify listing of mesh options

* Travis - use newer PETSc

* Solids - update sample run to list [.exo file] instead of name of sample mesh

* Solids - update make clean to remove src/*.d

* examples/solids: makefile cleanup

* make style

* doc examples/solids: clean up and explain nondimensionalization

* examples/solids: document algebraic solver

* examples/solids: use CG for Chebyshev eig estimation

* doc: fix references to examples/fluids

* Solids - remove mesh folder

* Solids - drop expicit ExodusII requirement, PETSc supports many types of meshes

* doc: mention PETSc --download-exodusii for Exodus

* doc: fix latexpdf

* Fix \longrightarrow rendering in PDF

* Solids - fix toctree link to README for pdflatex

* Examples and BPs Docs: Homogenize math with dS and dV and other tiny esthetics

* Solids - fix unshifted series for hyperSS log1p

* Improve doc of bpssphere: Add differential for consistency with all other examples and explain domain for clarity

* Solids - include sample mesh image

* Move mesh figure after note and slightly rename inclusion marker

Co-authored-by: Arash Mehraban <arashm81@gmail.com>
Co-authored-by: Jed Brown <jed@jedbrown.org>
Co-authored-by: valeriabarra <valeriabarra21@gmail.com>

show more ...


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