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2bba3ffa17-Jun-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Op - change LinearAssemble* to accept CeedVector instead of pointer to CeedVector, allows for less memory movement and interfaces with parent code better


/libCEED/backends/cuda/ceed-cuda-operator.c
/libCEED/backends/ref/ceed-ref-operator.c
/libCEED/doc/sphinx/source/releasenotes.rst
/libCEED/examples/petsc/setup.h
src/matops.c
/libCEED/include/ceed-impl.h
/libCEED/include/ceed.h
/libCEED/interface/ceed-fortran.c
/libCEED/interface/ceed-operator.c
/libCEED/tests/t533-operator-f.f90
/libCEED/tests/t533-operator.c
/libCEED/tests/t534-operator-f.f90
/libCEED/tests/t534-operator.c
/libCEED/tests/t535-operator-f.f90
/libCEED/tests/t535-operator.c
/libCEED/tests/t536-operator-f.f90
/libCEED/tests/t536-operator.c
/libCEED/tests/t537-operator.c
/libCEED/tests/t538-operator.c
80ac2e4315-Jun-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

style - rename AssembleLinear* to LinearAssemble*


/libCEED/.mailmap
/libCEED/.travis.yml
/libCEED/AUTHORS
/libCEED/Makefile
/libCEED/README.rst
/libCEED/azure-pipelines.yml
/libCEED/backends/blocked/ceed-blocked-operator.c
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator-build.cpp
/libCEED/backends/cuda-gen/ceed-cuda-gen-operator.c
/libCEED/backends/cuda-gen/ceed-cuda-gen.c
/libCEED/backends/cuda-reg/ceed-cuda-reg-basis.c
/libCEED/backends/cuda-reg/ceed-cuda-reg-restriction.c
/libCEED/backends/cuda-shared/ceed-cuda-shared-basis.c
/libCEED/backends/cuda/ceed-cuda-basis.c
/libCEED/backends/cuda/ceed-cuda-operator.c
/libCEED/backends/cuda/ceed-cuda-restriction.c
/libCEED/backends/cuda/ceed-cuda.h
/libCEED/backends/magma/ceed-magma-basis.c
/libCEED/backends/magma/ceed-magma-restriction.c
/libCEED/backends/magma/ceed-magma.c
/libCEED/backends/magma/ceed-magma.h
/libCEED/backends/magma/grad_1d.cu
/libCEED/backends/magma/grad_device.cuh
/libCEED/backends/magma/grad_generic.cu
/libCEED/backends/magma/gradn_2d.cu
/libCEED/backends/magma/gradn_3d.cu
/libCEED/backends/magma/gradt_2d.cu
/libCEED/backends/magma/gradt_3d.cu
/libCEED/backends/magma/interp_1d.cu
/libCEED/backends/magma/interp_2d.cu
/libCEED/backends/magma/interp_3d.cu
/libCEED/backends/magma/interp_device.cuh
/libCEED/backends/magma/interp_generic.cu
/libCEED/backends/magma/magma_check_cudaerror.h
/libCEED/backends/magma/magma_common_device.cuh
/libCEED/backends/magma/magma_dgemm_nontensor.c
/libCEED/backends/magma/magma_drestrictApply.cu
/libCEED/backends/magma/magma_grad.c
/libCEED/backends/magma/magma_interp.c
/libCEED/backends/magma/magma_weight.c
/libCEED/backends/magma/weight_1d.cu
/libCEED/backends/magma/weight_2d.cu
/libCEED/backends/magma/weight_3d.cu
/libCEED/backends/magma/weight_device.cuh
/libCEED/backends/magma/weight_generic.cu
/libCEED/backends/occa/ceed-occa-operator.c
/libCEED/backends/occa/ceed-occa-qfunction-op.c
/libCEED/backends/occa/ceed-occa-restrict.c
/libCEED/backends/opt/ceed-opt-operator.c
/libCEED/backends/ref/ceed-ref-basis.c
/libCEED/backends/ref/ceed-ref-operator.c
/libCEED/backends/ref/ceed-ref-restriction.c
/libCEED/backends/ref/ceed-ref.c
/libCEED/backends/ref/ceed-ref.h
/libCEED/backends/xsmm/ceed-xsmm-tensor.c
/libCEED/benchmarks/benchmark.sh
/libCEED/benchmarks/petsc-bps.sh
/libCEED/benchmarks/petsc-bpsraw.sh
/libCEED/benchmarks/postprocess_base.py
/libCEED/benchmarks/postprocess_plot.py
/libCEED/benchmarks/postprocess_table.py
/libCEED/doc/sphinx/requirements.txt
/libCEED/doc/sphinx/source/libCEEDapi.rst
/libCEED/doc/sphinx/source/libCEEDdev.rst
/libCEED/examples/ceed/ex1-volume.c
/libCEED/examples/ceed/ex2-surface.c
/libCEED/examples/petsc/README.md
/libCEED/examples/petsc/bps.c
/libCEED/examples/petsc/bpsraw.c
/libCEED/examples/petsc/setup.h
src/matops.c
/libCEED/examples/tutorials/tutorial-1-vector.ipynb
/libCEED/examples/tutorials/tutorial-2-elemrestriction.ipynb
/libCEED/examples/tutorials/tutorial-3-basis.ipynb
/libCEED/examples/tutorials/tutorial-4-qfunction.ipynb
/libCEED/examples/tutorials/tutorial-5-operator.ipynb
/libCEED/include/ceed-backend.h
/libCEED/include/ceed-impl.h
/libCEED/include/ceed.h
/libCEED/interface/ceed-basis.c
/libCEED/interface/ceed-elemrestriction.c
/libCEED/interface/ceed-fortran.c
/libCEED/interface/ceed-operator.c
/libCEED/interface/ceed-qfunction.c
/libCEED/interface/ceed.c
/libCEED/python/ceed_vector.py
/libCEED/requirements-gpu.txt
/libCEED/setup.py
/libCEED/tests/python/test-1-vector.py
/libCEED/tests/t201-elemrestriction-f.f90
/libCEED/tests/t201-elemrestriction.c
/libCEED/tests/t204-elemrestriction.c
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/libCEED/tests/t530-operator-f.f90
/libCEED/tests/t530-operator.c
/libCEED/tests/t531-operator-f.f90
/libCEED/tests/t531-operator.c
/libCEED/tests/t532-operator-f.f90
/libCEED/tests/t532-operator.c
/libCEED/tests/t533-operator-f.f90
/libCEED/tests/t533-operator.c
/libCEED/tests/t534-operator-f.f90
/libCEED/tests/t534-operator.c
/libCEED/tests/t535-operator-f.f90
/libCEED/tests/t535-operator.c
/libCEED/tests/t536-operator-f.f90
/libCEED/tests/t536-operator.c
/libCEED/tests/t537-operator.c
/libCEED/tests/t537-operator.h
/libCEED/tests/t537-operator.okl
/libCEED/tests/t538-operator.c
/libCEED/tests/tap.sh
86a4273e19-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - use Pa in docs table


/libCEED/examples/mfem/bp1.cpp
README.rst
7ab18feb19-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - rename diagnostic output volumentric strain


README.rst
elasticity.c
6a0f6e4119-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - notational consistency


README.rst
285cb7fe19-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Soilds - minor README style updates


README.rst
b6054f3719-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - explict about only compressible at this time in README


README.rst
bd9bac2019-May-2020 Jeremy L Thompson <25011573+jeremylt@users.noreply.github.com>

Solids - bold E in documentation

Co-authored-by: Jed Brown <jed@jedbrown.org>


README.rst
bca55b9e19-May-2020 Jeremy L Thompson <25011573+jeremylt@users.noreply.github.com>

Solids - typo fix

Co-authored-by: Valeria Barra <39932030+valeriabarra@users.noreply.github.com>


README.rst
6d4f1eca19-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - add table of diagnostic quantities formualations


README.rst
f81c27ea16-May-2020 Jed Brown <jed@jedbrown.org>

examples/solids: skip autoassigned object name for cleaner viz


elasticity.c
src/misc.c
08f6bc8115-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - swap sign on pressure for viz


qfunctions/hyperFS.h
qfunctions/hyperSS.h
qfunctions/linElas.h
379387d415-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - condensed pressure -> pressure


elasticity.c
qfunctions/hyperFS.h
qfunctions/hyperSS.h
qfunctions/linElas.h
226336a015-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - update gitignore


.gitignore
13fdad4b15-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - add stress tensor invariants


elasticity.c
qfunctions/hyperFS.h
qfunctions/hyperSS.h
qfunctions/linElas.h
src/setuplibceed.c
8ca58ff315-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - combine final solution output with diagnostics


elasticity.c
qfunctions/hyperFS.h
qfunctions/hyperSS.h
qfunctions/linElas.h
src/setuplibceed.c
f7b4142e14-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - add nu_smoother option


README.rst
elasticity.c
elasticity.h
src/cloptions.c
src/matops.c
src/misc.c
src/setuplibceed.c
084ed6c613-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - update comment, currently scaling to Pa, though we may want to actually scale to GPa


src/cloptions.c
18fde98c13-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - small inline function to compute detC_m1 from E2work


qfunctions/hyperFS.h
17fd649a13-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - fix bad spelling


elasticity.c
b8eaa5f013-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

make style


elasticity.c
elasticity.h
src/setuplibceed.c
5c25879a13-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - add output of diagnostic variables for viewing


elasticity.c
elasticity.h
qfunctions/hyperFS.h
qfunctions/hyperSS.h
qfunctions/linElas.h
src/matops.c
src/misc.c
src/setuplibceed.c
a3c02c4013-May-2020 Jeremy L Thompson <thompson.jeremy.luke@gmail.com>

Solids - clean up strain energy computation, prep for plotting stress, strain energy, etc


/libCEED/backends/cuda-gen/ceed-cuda-gen-qfunction.c
elasticity.c
elasticity.h
src/matops.c
src/setupdm.c
src/setuplibceed.c
/libCEED/include/ceedf.h
/libCEED/tests/t000-ceed-f.f90
/libCEED/tests/t001-ceed-f.f90
/libCEED/tests/t003-ceed-f.f90
/libCEED/tests/t100-vector-f.f90
/libCEED/tests/t101-vector-f.f90
/libCEED/tests/t102-vector-f.f90
/libCEED/tests/t103-vector-f.f90
/libCEED/tests/t104-vector-f.f90
/libCEED/tests/t105-vector-f.f90
/libCEED/tests/t106-vector-f.f90
/libCEED/tests/t107-vector-f.f90
/libCEED/tests/t108-vector-f.f90
/libCEED/tests/t200-elemrestriction-f.f90
/libCEED/tests/t201-elemrestriction-f.f90
/libCEED/tests/t202-elemrestriction-f.f90
/libCEED/tests/t208-elemrestriction-f.f90
/libCEED/tests/t209-elemrestriction-f.f90
/libCEED/tests/t210-elemrestriction-f.f90
/libCEED/tests/t211-elemrestriction-f.f90
/libCEED/tests/t212-elemrestriction-f.f90
/libCEED/tests/t300-basis-f.f90
/libCEED/tests/t301-basis-f.f90
/libCEED/tests/t302-basis-f.f90
/libCEED/tests/t304-basis-f.f90
/libCEED/tests/t305-basis-f.f90
/libCEED/tests/t306-basis-f.f90
/libCEED/tests/t313-basis-f.f90
/libCEED/tests/t314-basis-f.f90
/libCEED/tests/t320-basis-f.f90
/libCEED/tests/t322-basis-f.f90
/libCEED/tests/t323-basis-f.f90
/libCEED/tests/t400-qfunction-f.f90
/libCEED/tests/t401-qfunction-f.f90
/libCEED/tests/t402-qfunction-f.f90
/libCEED/tests/t410-qfunction-f.f90
/libCEED/tests/t411-qfunction-f.f90
/libCEED/tests/t412-qfunction-f.f90
/libCEED/tests/t413-qfunction-f.f90
/libCEED/tests/t500-operator-f.f90
/libCEED/tests/t501-operator-f.f90
/libCEED/tests/t503-operator-f.f90
/libCEED/tests/t504-operator-f.f90
/libCEED/tests/t505-operator-f.f90
/libCEED/tests/t506-operator-f.f90
/libCEED/tests/t510-operator-f.f90
/libCEED/tests/t511-operator-f.f90
/libCEED/tests/t520-operator-f.f90
/libCEED/tests/t521-operator-f.f90
/libCEED/tests/t522-operator-f.f90
/libCEED/tests/t523-operator-f.f90
/libCEED/tests/t524-operator-f.f90
/libCEED/tests/t530-operator-f.f90
/libCEED/tests/t531-operator-f.f90
/libCEED/tests/t532-operator-f.f90
/libCEED/tests/t533-operator-f.f90
/libCEED/tests/t534-operator-f.f90
/libCEED/tests/t535-operator-f.f90
/libCEED/tests/t536-operator-f.f90
/libCEED/tests/t540-operator-f.f90
3edc4e6414-May-2020 Jed Brown <jed@jedbrown.org>

examples: support for PETSc-3.14 DMPlexGetClosureIndices


/libCEED/.travis.yml
/libCEED/examples/fluids/navierstokes.c
/libCEED/examples/petsc/setup.h
/libCEED/examples/petsc/setuparea.h
/libCEED/examples/petsc/setupsphere.h
src/setuplibceed.c
9e9355a014-May-2020 Jed Brown <jed@jedbrown.org>

examples/solids: extern global in header to avoid duplicate symbols


/libCEED/.gitignore
/libCEED/examples/fluids/README.md
/libCEED/examples/fluids/advection.h
/libCEED/examples/fluids/advection2d.h
/libCEED/examples/fluids/densitycurrent.h
/libCEED/examples/fluids/index.rst
/libCEED/examples/fluids/navierstokes.c
/libCEED/examples/fluids/tests-output/fluids-navierstokes-explicit.bin
/libCEED/examples/fluids/tests-output/fluids-navierstokes-implicit-stab-none.bin
/libCEED/examples/fluids/tests-output/fluids-navierstokes-implicit-stab-supg.bin
/libCEED/examples/petsc/area.c
/libCEED/examples/petsc/bpssphere.c
/libCEED/examples/petsc/setuparea.h
/libCEED/examples/petsc/setupsphere.h
elasticity.h
/libCEED/tests/tap.sh

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