History log of /petsc/src/dm/impls/forest/ (Results 201 – 225 of 492)
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b4cb36ea22-Mar-2019 Junchao Zhang <jczhang@mcs.anl.gov>

Use MPI_Type_create_resized to replace MPI_UB

MPI_Type_create_resized is portable and is the right method to replace MPI_UB

792b654f18-Mar-2019 Matthew G. Knepley <knepley@gmail.com>

DM: Expose creation functions for subdm and superdm from a Section


/petsc/config/BuildSystem/config/packages/MFEM.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/nargs.py
/petsc/config/PETSc/Configure.py
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/pcpatchimpl.h
/petsc/include/petsc/private/petscdsimpl.h
/petsc/include/petsc/private/sfimpl.h
/petsc/include/petsc/private/taoimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petsc/private/vecscatterimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/include/petscsf.h
/petsc/include/petscsys.h
/petsc/include/petscsystypes.h
/petsc/include/petsctao.h
/petsc/include/petscvec.h
/petsc/share/petsc/datafiles/matrices/m_05_05_crk.mtx
/petsc/share/petsc/datafiles/meshes/gmsh-3d-ascii-32.msh
/petsc/share/petsc/datafiles/meshes/gmsh-3d-ascii-64.msh
/petsc/share/petsc/datafiles/meshes/gmsh-3d-binary-32.msh
/petsc/share/petsc/datafiles/meshes/gmsh-3d-binary-64.msh
/petsc/share/petsc/datafiles/meshes/gmsh-3d.geo
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/field/examples/tutorials/output/ex1_ds.out
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/dacreate.c
forest.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex10.c
/petsc/src/dm/impls/plex/examples/tests/ex11.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/ex32.c
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_3d_32.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_3d_32_np2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_3d_64.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_3d_64_np2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_3d_legacy.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_10.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_11.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_16.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_17.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_18.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_19.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_6.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex26_9.out
/petsc/src/dm/impls/plex/examples/tests/output/ex32_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex32_1.out
/petsc/src/dm/impls/plex/examples/tests/output/ex32_2.out
/petsc/src/dm/impls/plex/examples/tests/output/ex32_3.out
/petsc/src/dm/impls/plex/examples/tests/output/ex32_4.out
/petsc/src/dm/impls/plex/examples/tests/output/ex32_5.out
/petsc/src/dm/impls/plex/examples/tests/output/ex32_6.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexglvis.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexpreallocate.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/impls/stag/examples/tests/ex1.c
/petsc/src/dm/impls/stag/examples/tests/output/ex1_stencil_none_1.out
/petsc/src/dm/impls/stag/examples/tests/output/ex1_stencil_none_2.out
/petsc/src/dm/impls/stag/stag2d.c
/petsc/src/dm/impls/stag/stag3d.c
/petsc/src/dm/impls/swarm/examples/tests/makefile
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmget.c
/petsc/src/dm/interface/dmi.c
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/docs/website/features/gpus.html
/petsc/src/ksp/f90-mod/petsckspdefmod.F
/petsc/src/ksp/f90-mod/petsckspmod.F
/petsc/src/ksp/f90-mod/petscpcmod.F
/petsc/src/ksp/ksp/examples/tests/ex11.c
/petsc/src/ksp/ksp/examples/tutorials/ex5.c
/petsc/src/ksp/ksp/examples/tutorials/ex52f.F90
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/ex73.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex43_6.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex49_hypre_nullspace.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex50_tut_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex59_bddc_fetidp_approximate.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex63_2.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex63_2_alt.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_3lev.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_4lev.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_deluxe_layers.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_neu_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_fetidp_elast.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_par_nd_parmetis.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex72_bddc_par_nd_ptscotch.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex73_basic_dirichlet.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex73_basic_neumann.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex73_mg_2lv_2mg.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex73_mg_3lv_2mg.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex73_mg_3lv_2mg_customcommsize.out
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcgraph.c
/petsc/src/ksp/pc/impls/bddc/bddcnullspace.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.h
/petsc/src/ksp/pc/impls/bddc/bddcstructs.h
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/is/pcis.h
/petsc/src/ksp/pc/impls/ksp/pcksp.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/impls/patch/pcpatch.c
/petsc/src/ksp/pc/impls/telescope/makefile
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/impls/telescope/telescope.h
/petsc/src/ksp/pc/impls/telescope/telescope_coarsedm.c
/petsc/src/ksp/pc/impls/telescope/telescope_dmda.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/examples/tests/ex104.c
/petsc/src/mat/examples/tests/ex115.c
/petsc/src/mat/examples/tests/ex23.c
/petsc/src/mat/examples/tests/ex5.c
/petsc/src/mat/examples/tests/ex72.c
/petsc/src/mat/examples/tests/ex88.c
/petsc/src/mat/examples/tests/ex94.c
/petsc/src/mat/examples/tests/output/ex72_3.out
/petsc/src/mat/examples/tests/output/ex88_1.out
/petsc/src/mat/examples/tests/output/ex94_2.out
/petsc/src/mat/examples/tutorials/ex15.c
/petsc/src/mat/examples/tutorials/output/ex15_7.out
/petsc/src/mat/examples/tutorials/output/ex15_7_alt.out
/petsc/src/mat/impls/adj/mpi/mpiadj.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiaij.h
/petsc/src/mat/impls/aij/mpi/mpimatmatmult.c
/petsc/src/mat/impls/aij/mpi/mpiptap.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/mpi/superlu_dist/superlu_dist.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/mpi/mpidense.h
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/interface/matnull.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/impls/hierarchical/hierarchical.c
/petsc/src/mat/partition/impls/pmetis/pmetis.c
/petsc/src/mat/partition/partition.c
/petsc/src/mat/utils/multequal.c
/petsc/src/snes/examples/tutorials/ex62.c
/petsc/src/snes/examples/tutorials/ex69.c
/petsc/src/snes/examples/tutorials/output/ex12_p4est_solve_bddc.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_solve_bddc_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_solve_bddc_alt_2.out
/petsc/src/snes/examples/tutorials/output/ex56_0.out
/petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q1_p0_vanka_add.out
/petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q1_p0_vanka_add_unity.out
/petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q2_q1_vanka_add.out
/petsc/src/snes/examples/tutorials/output/ex62_2d_quad_q2_q1_vanka_add_unity.out
/petsc/src/snes/impls/tr/tr.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/fileio/sysio.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/objects/ptype.c
/petsc/src/sys/utils/sorti.c
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/bound/impls/bncg/bncg.c
/petsc/src/tao/bound/impls/bnk/bnk.c
/petsc/src/tao/bound/impls/bnk/bnls.c
/petsc/src/tao/bound/impls/bnk/bntl.c
/petsc/src/tao/bound/impls/bnk/bntr.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/tao/complementarity/impls/asls/asfls.c
/petsc/src/tao/complementarity/impls/asls/asils.c
/petsc/src/tao/complementarity/impls/ssls/ssfls.c
/petsc/src/tao/complementarity/impls/ssls/ssils.c
/petsc/src/tao/constrained/impls/ipm/ipm.c
/petsc/src/tao/interface/ftn-custom/ztaosolverf.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/interface/taosolver_fg.c
/petsc/src/tao/interface/taosolver_hj.c
/petsc/src/tao/leastsquares/impls/brgn/brgn.c
/petsc/src/tao/leastsquares/impls/pounders/pounders.c
/petsc/src/tao/pde_constrained/impls/lcl/lcl.c
/petsc/src/tao/quadratic/impls/bqpip/bqpip.c
/petsc/src/tao/quadratic/impls/gpcg/gpcg.c
/petsc/src/tao/unconstrained/impls/bmrm/bmrm.c
/petsc/src/tao/unconstrained/impls/cg/taocg.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
/petsc/src/tao/unconstrained/impls/neldermead/neldermead.c
/petsc/src/tao/unconstrained/impls/nls/nls.c
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/tao/unconstrained/impls/owlqn/owlqn.c
/petsc/src/ts/event/tsevent.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex11_sa.c
/petsc/src/ts/examples/tutorials/ex18.c
/petsc/src/ts/examples/tutorials/output/ex16opt_p_1.out
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/trajectory/interface/traj.c
/petsc/src/vec/is/sf/examples/tutorials/ex1.c
/petsc/src/vec/is/sf/examples/tutorials/output/ex1_bcastop_basic.out
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/is/sf/impls/window/sfwindow.c
/petsc/src/vec/is/sf/interface/dlregissf.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/sf/interface/sftype.c
/petsc/src/vec/vec/examples/tests/ex22.c
/petsc/src/vec/vec/examples/tests/ex29.c
/petsc/src/vec/vec/examples/tests/output/ex29_test_inv_error.out
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/vinv.c
/petsc/src/vec/vscat/impls/makefile
/petsc/src/vec/vscat/impls/mpi1/vpscat_mpi1.h
/petsc/src/vec/vscat/impls/sf/makefile
/petsc/src/vec/vscat/impls/sf/vscatsf.c
/petsc/src/vec/vscat/interface/dlregisvecscat.c
/petsc/src/vec/vscat/interface/vscatfce.c
b892f42d13-Mar-2019 Toby Isaac <tisaac@cc.gatech.edu>

DMP4EST: remove MPI_UB


/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscksp.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/src/dm/dt/interface/dtds.c
p4est/pforest.c
/petsc/src/dm/impls/plex/examples/tests/ex10.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexpartition.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexreorder.c
/petsc/src/dm/impls/plex/plexsection.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/swarm/examples/tests/makefile
/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmi.c
/petsc/src/ksp/f90-mod/petsckspdefmod.F
/petsc/src/ksp/f90-mod/petsckspmod.F
/petsc/src/ksp/f90-mod/petscpcmod.F
/petsc/src/ksp/ksp/examples/tutorials/ex73.c
/petsc/src/ksp/ksp/examples/tutorials/makefile
/petsc/src/ksp/ksp/examples/tutorials/output/ex43_6.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex73_basic_dirichlet.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex73_basic_neumann.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex73_mg_2lv_2mg.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex73_mg_3lv_2mg.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex73_mg_3lv_2mg_customcommsize.out
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/pc/impls/telescope/makefile
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/impls/telescope/telescope.h
/petsc/src/ksp/pc/impls/telescope/telescope_coarsedm.c
/petsc/src/ksp/pc/impls/telescope/telescope_dmda.c
/petsc/src/mat/examples/tests/ex104.c
/petsc/src/mat/examples/tests/ex115.c
/petsc/src/mat/examples/tests/ex23.c
/petsc/src/mat/examples/tests/ex88.c
/petsc/src/mat/examples/tests/output/ex88_1.out
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/mpi/mpidense.h
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/utils/multequal.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex18.c
9969840108-Mar-2019 Matthew Knepley <knepley@gmail.com>

p4est needs extra function pointers


/petsc/Jenkinsfile
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/MFEM.py
/petsc/config/BuildSystem/config/packages/PaStiX.py
/petsc/config/BuildSystem/config/packages/SuperLU_DIST.py
/petsc/config/BuildSystem/config/packages/cuda.py
/petsc/config/BuildSystem/config/packages/elemental.py
/petsc/config/BuildSystem/config/packages/hypre.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/saws.py
/petsc/config/BuildSystem/config/packages/scalapack.py
/petsc/config/BuildSystem/nargs.py
/petsc/config/configure.py
/petsc/config/example_template.py
/petsc/config/examples/arch-freebsd-cxx-pkgs-opt.py
/petsc/config/examples/arch-jenkins-linux-gcc-complex-opt.py
/petsc/config/examples/arch-jenkins-linux-gcc-pkgs-opt.py
/petsc/config/examples/arch-jenkins-linux-gcc-quad-64idx-dbg.py
/petsc/config/examples/arch-jenkins-mswin-cxx-complex-dbg.py
/petsc/config/examples/arch-jenkins-mswin-double-opt.py
/petsc/config/gmakegen.py
/petsc/config/gmakegentest.py
/petsc/config/report_tests.py
/petsc/gmakefile.test
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/kspimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/pcpatchimpl.h
/petsc/include/petsc/private/snesimpl.h
/petsc/include/petsc/private/taoimpl.h
/petsc/include/petsc/private/tsimpl.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmplextypes.h
/petsc/include/petscerror.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/include/petscpctypes.h
/petsc/include/petscsnes.h
/petsc/include/petscsystypes.h
/petsc/include/petsctao.h
/petsc/include/petscts.h
/petsc/include/petscvec.h
/petsc/include/petscversion.h
/petsc/include/petscviewer.h
/petsc/include/petscviewerhdf5.h
/petsc/lib/petsc/bin/maint/generateetags.py
/petsc/lib/petsc/bin/maint/runhtml.py
/petsc/lib/petsc/bin/petsc_gen_xdmf.py
/petsc/lib/petsc/conf/rules
/petsc/share/petsc/datafiles/matrices/LFAT5.mtx
/petsc/share/petsc/datafiles/meshes/gmsh-3d-ascii.msh2
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/petsc/src/vec/vec/impls/nest/vecnest.c
/petsc/src/vec/vec/impls/seq/seqcuda/cudavecimpl.h
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
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/petsc/src/vec/vec/utils/vecstash.c
/petsc/src/vec/vscat/examples/ex6.c
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/petsc/src/vec/vscat/impls/mpi1/vpscat_mpi1.h
/petsc/src/vec/vscat/impls/mpi3/vpscat.h
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/petsc/src/vec/vscat/interface/vscreate.c
ad4e72aa19-Jan-2019 Matthew G. Knepley <knepley@gmail.com>

DMForest ex2: Fix example for new DS interface


/petsc/config/BuildSystem/config/packages/exodusii.py
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/petsc/config/BuildSystem/config/packages/petsc4py.py
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39b1977e05-Jan-2019 Matthew G. Knepley <knepley@gmail.com>

Forest ex2: Updated to new interface

e5e5263804-Jan-2019 Matthew G. Knepley <knepley@gmail.com>

DM+DS: Reorganized DS handling completely do that multiple regions can be supported
- A region is labeled portion of the mesh which has the same approximation space for the solution. Note that this i

DM+DS: Reorganized DS handling completely do that multiple regions can be supported
- A region is labeled portion of the mesh which has the same approximation space for the solution. Note that this is NOT the same as the label indicating the support of a field. Regions are the refinement of the field supports into unique approximation space pieces. Right now, we only support a single strategy, namely one space on the regular mesh and one on the hybrid cells, but we only have to change DMCreateDS() to extend the capability.
- Now instead of using PetscDSSetDiscretization() and DMSetDS(), you use DMSetField() and DMCreateDS(). Also, you now must use DMCopyDisc(), instead of DMSetDS(), which copies both the field and DS structure to another DM. These changes have been made in all examples.
- DMGetCellDS() returns the approximation space for that cell
- DMGetDS() return the default space since most people will not use regions. There is still a lot of work left t generalize all methods to multiple DSes, but all old code still functions.
- DMGetRegion/RegionNumDS() gets spaces by label and region number
- DMCreateDS() is the setup method which makes the regions and corresponding DSes. With some work, this could be converted to a lazy initialization.
- Cleaned up access to DS since now we can have more than one
- Projection was improved to extract the DS for the particular cells it is iterating over
- The DS are set from options during Section creation. The idea is that people using DS would also use automatic Section creation, or they would manage things themselves and call SetFromOptions manually.
- I updated the subDM and superDM constructors, but they only work for a single region

show more ...

49be454904-Jan-2019 Matthew G. Knepley <knepley@gmail.com>

DM: Moved the flag indicating options were set to DM


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4c298f3820-Dec-2018 Matthew G. Knepley <knepley@gmail.com>

Forest ex2: Fixed DMLabelCreate()

d67d17b120-Dec-2018 Matthew G. Knepley <knepley@gmail.com>

DMLabel: Make it a PetscObject
- Add a CLASSID
- Constructor takes an MPI_Comm
- Remove interface that is in Object
- Update interface in library
- Fixed location of destruct in DMPlexCreateSubmeshGe

DMLabel: Make it a PetscObject
- Add a CLASSID
- Constructor takes an MPI_Comm
- Remove interface that is in Object
- Update interface in library
- Fixed location of destruct in DMPlexCreateSubmeshGeneric_Interpolated()
- Added DMLabelReset()

show more ...


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/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesj2.c
/petsc/src/snes/interface/snesregi.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/sys/classes/draw/impls/makefile
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/draw/interface/drawregall.c
/petsc/src/sys/classes/viewer/impls/draw/drawv.c
/petsc/src/sys/classes/viewer/impls/hdf5/ftn-custom/zhdf5f.c
/petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/examples/tests/ex23.c
/petsc/src/sys/examples/tests/ex23options
/petsc/src/sys/examples/tests/ex39.c
/petsc/src/sys/examples/tests/makefile
/petsc/src/sys/examples/tests/output/ex23_1.out
/petsc/src/sys/examples/tests/output/ex39.out
/petsc/src/sys/f90-mod/petscsys.h
/petsc/src/sys/logging/plog.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/objects/pname.c
/petsc/src/sys/objects/ptype.c
/petsc/src/sys/utils/makefile
/petsc/src/sys/utils/mathclose.c
/petsc/src/tao/unconstrained/examples/tutorials/burgers_spectral.c
/petsc/src/tao/unconstrained/examples/tutorials/spectraladjointassimilation.c
/petsc/src/ts/adapt/impls/basic/adaptbasic.c
/petsc/src/ts/adapt/impls/history/adapthist.c
/petsc/src/ts/adapt/impls/history/makefile
/petsc/src/ts/adapt/impls/makefile
/petsc/src/ts/adapt/interface/tsadapt.c
/petsc/src/ts/examples/tests/ex12.c
/petsc/src/ts/examples/tests/ex13.c
/petsc/src/ts/examples/tests/makefile
/petsc/src/ts/examples/tests/output/ex13_1.out
/petsc/src/ts/examples/tests/output/ex13_2.out
/petsc/src/ts/examples/tests/output/ex13_3.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex3.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5adj.c
/petsc/src/ts/examples/tutorials/autodiff/adolc-utils/contexts.cxx
/petsc/src/ts/examples/tutorials/autodiff/adolc-utils/drivers.cxx
/petsc/src/ts/examples/tutorials/autodiff/adolc-utils/init.cxx
/petsc/src/ts/examples/tutorials/autodiff/adolc-utils/matfree.cxx
/petsc/src/ts/examples/tutorials/autodiff/adolc-utils/sparse.cxx
/petsc/src/ts/examples/tutorials/autodiff/adr_ex1.cxx
/petsc/src/ts/examples/tutorials/autodiff/adr_ex5adj.cxx
/petsc/src/ts/examples/tutorials/autodiff/adr_ex5adj_mf.cxx
/petsc/src/ts/examples/tutorials/autodiff/ex16adj.cxx
/petsc/src/ts/examples/tutorials/autodiff/ex16adj_tl.cxx
/petsc/src/ts/examples/tutorials/autodiff/ex16opt_ic.cxx
/petsc/src/ts/examples/tutorials/autodiff/makefile
/petsc/src/ts/examples/tutorials/autodiff/output/adr_ex1_1.out
/petsc/src/ts/examples/tutorials/autodiff/output/adr_ex1_2.out
/petsc/src/ts/examples/tutorials/autodiff/output/adr_ex5adj_1.out
/petsc/src/ts/examples/tutorials/autodiff/output/adr_ex5adj_2.out
/petsc/src/ts/examples/tutorials/autodiff/output/adr_ex5adj_3.out
/petsc/src/ts/examples/tutorials/autodiff/output/adr_ex5adj_4.out
/petsc/src/ts/examples/tutorials/autodiff/output/adr_ex5adj_5.out
/petsc/src/ts/examples/tutorials/autodiff/output/adr_ex5adj_6.out
/petsc/src/ts/examples/tutorials/autodiff/output/adr_ex5adj_mf_1.out
/petsc/src/ts/examples/tutorials/autodiff/output/adr_ex5adj_mf_2.out
/petsc/src/ts/examples/tutorials/autodiff/output/ex16adj_1.out
/petsc/src/ts/examples/tutorials/autodiff/output/ex16adj_2.out
/petsc/src/ts/examples/tutorials/autodiff/output/ex16adj_3.out
/petsc/src/ts/examples/tutorials/autodiff/output/ex16adj_4.out
/petsc/src/ts/examples/tutorials/autodiff/output/ex16adj_tl_1.out
/petsc/src/ts/examples/tutorials/autodiff/output/ex16adj_tl_2.out
/petsc/src/ts/examples/tutorials/autodiff/output/ex16adj_tl_3.out
/petsc/src/ts/examples/tutorials/autodiff/output/ex16adj_tl_4.out
/petsc/src/ts/examples/tutorials/autodiff/output/ex16opt_ic_1.out
/petsc/src/ts/examples/tutorials/eimex/ct_vdp_imex.c
/petsc/src/ts/examples/tutorials/ex10.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex12.c
/petsc/src/ts/examples/tutorials/ex16opt_ic.c
/petsc/src/ts/examples/tutorials/ex16opt_p.c
/petsc/src/ts/examples/tutorials/ex18.c
/petsc/src/ts/examples/tutorials/ex1f.F
/petsc/src/ts/examples/tutorials/ex2.c
/petsc/src/ts/examples/tutorials/ex20adj.c
/petsc/src/ts/examples/tutorials/ex20opt_ic.c
/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/ex21.c
/petsc/src/ts/examples/tutorials/ex22.c
/petsc/src/ts/examples/tutorials/ex24.c
/petsc/src/ts/examples/tutorials/ex3.c
/petsc/src/ts/examples/tutorials/ex4.c
/petsc/src/ts/examples/tutorials/ex48.c
/petsc/src/ts/examples/tutorials/ex5.c
/petsc/src/ts/examples/tutorials/ex6.c
/petsc/src/ts/examples/tutorials/ex8.c
/petsc/src/ts/examples/tutorials/ex9.c
/petsc/src/ts/examples/tutorials/extchem.c
/petsc/src/ts/examples/tutorials/extchem.example.1
/petsc/src/ts/examples/tutorials/extchemfield.c
/petsc/src/ts/examples/tutorials/gasoline.inp
/petsc/src/ts/examples/tutorials/h2_10sp.inp
/petsc/src/ts/examples/tutorials/meth_ethanol.inp
/petsc/src/ts/examples/tutorials/output/ex16opt_ic_2.out
/petsc/src/ts/examples/tutorials/output/ex20adj_3.out
/petsc/src/ts/examples/tutorials/output/ex20adj_4.out
/petsc/src/ts/examples/tutorials/phasefield/biharmonic.c
/petsc/src/ts/examples/tutorials/phasefield/biharmonictest.m
/petsc/src/ts/examples/tutorials/phasefield/heat.c
/petsc/src/ts/examples/tutorials/phasefield/heattest.m
/petsc/src/ts/examples/tutorials/power_grid/ex3opt.c
/petsc/src/ts/examples/tutorials/power_grid/petscopt_ex7
/petsc/src/ts/examples/tutorials/power_grid/petscopt_ex8
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/output/ex9busadj_1.out
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/glee/glee.c
/petsc/src/ts/interface/dlregists.c
/petsc/src/ts/interface/makefile
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tshistory.c
/petsc/src/ts/trajectory/impls/basic/trajbasic.c
/petsc/src/ts/trajectory/impls/memory/trajmemory.c
/petsc/src/ts/trajectory/impls/singlefile/singlefile.c
/petsc/src/ts/trajectory/impls/visualization/trajvisualization.c
/petsc/src/ts/trajectory/interface/traj.c
/petsc/src/ts/trajectory/makefile
/petsc/src/ts/trajectory/utils/makefile
/petsc/src/ts/trajectory/utils/reconstruct.c
/petsc/src/vec/is/ao/examples/tests/ex5.c
/petsc/src/vec/is/ao/examples/tests/makefile
/petsc/src/vec/is/ao/examples/tests/output/ex5_1.out
/petsc/src/vec/is/ao/impls/memscalable/aomemscalable.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/utils/pmap.c
/petsc/src/vec/vec/examples/tutorials/ex18.c
/petsc/src/vec/vec/examples/tutorials/ex19.c
/petsc/src/vec/vec/examples/tutorials/output/ex18_1.out
/petsc/src/vec/vec/examples/tutorials/output/ex18_2.out
/petsc/src/vec/vec/examples/tutorials/output/ex19_1.out
/petsc/src/vec/vec/examples/tutorials/output/ex19_2.out
/petsc/src/vec/vec/examples/tutorials/output/ex19_3.out
/petsc/src/vec/vec/examples/tutorials/output/ex19_4.out
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/interface/vector.c
b9962b3a22-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest: fix compiler warning

In file included from /nfs2/szampini/src/petsc/src/dm/impls/forest/p4est/pforest.c:8:0,
from /nfs2/szampini/src/petsc/src/dm/impls/forest/p4est/dmp4es

DMForest: fix compiler warning

In file included from /nfs2/szampini/src/petsc/src/dm/impls/forest/p4est/pforest.c:8:0,
from /nfs2/szampini/src/petsc/src/dm/impls/forest/p4est/dmp4est.c:13:
/nfs2/szampini/src/petsc/src/dm/impls/forest/p4est/pforest.c: In function ‘DMPforestGetTransferSF_Internal’:
/nfs2/szampini/src/petsc/src/dm/impls/forest/p4est/petsc_p4est_package.h:38:7: warning: ‘quadCoarse’ may be used uninitialized in this function [-Wmaybe-uninitialized]
ret = func args; \
^
In file included from /nfs2/szampini/src/petsc/src/dm/impls/forest/p4est/dmp4est.c:13:0:
/nfs2/szampini/src/petsc/src/dm/impls/forest/p4est/pforest.c:2620:27: note: ‘quadCoarse’ was declared here
p4est_quadrant_t *quadCoarse;
^

show more ...

18b41abc16-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest: Minor fixes for coding style


p4est/pforest.c
/petsc/src/ksp/ksp/examples/tutorials/ex71.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_both_approx.out
/petsc/src/ksp/ksp/examples/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel_parmetis.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel_parmetis_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_serial.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_serial_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_nonconformal_parallel_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_nonconformal_serial_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_fas_q2_conformal_serial.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddc_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_parallel_bddcfas_alt.out
/petsc/src/snes/examples/tutorials/output/ex12_p4est_full_q2_nonconformal_serial.out
/petsc/src/snes/examples/tutorials/output/ex12_quad_q1_adapt_0.out
/petsc/src/ts/examples/tutorials/ex11.c
cd56b79801-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest ex2: added few tests

Add multiple adaptivity steps in 3D

activate transfer from base tests including the case where the final forest is non-conforming

fix for quad precision

disable sing

DMForest ex2: added few tests

Add multiple adaptivity steps in 3D

activate transfer from base tests including the case where the final forest is non-conforming

fix for quad precision

disable single precision tests

add test case with no adapt label

flag cases where transfer vec fails with non-cartesian meshes

add two cases with transferfrombase with more complicated meshes

show more ...

a753915101-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest tutorials ex1: added few tests

added sphere and shell conversions topology (broken)

disable VTK output for complex runs


/petsc/include/petscdmplex.h
examples/tutorials/ex1.c
examples/tutorials/output/ex1_brick_periodic_glvis.out
examples/tutorials/output/ex1_sphere.out
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/output/ex1_glvis_3d_tet.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_glvis_3d_tet_per.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_7.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_gmsh_8.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_bug_overlapsf.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_s2t_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_s2t_3d_hash.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_gmsh_surface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_hyb_2d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_hyb_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_s2t_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_s2t_3d_hash.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_gmsh_surface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_s2t_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_s2t_3d_hash.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_gmsh_surface.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_hyb_2d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_hyb_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_ovl_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_par_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_periodic.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_periodic_3d.out
/petsc/src/dm/impls/plex/examples/tests/output/ex1_p4est_s2t_bugfaces_3d.out
/petsc/src/dm/impls/plex/plex.c
14c9189614-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMP4est: fix transfer bad cids in serial

We were setting cids assuming that the root would be
updated, but it wasn't always, so we
compute the cids but only set when the root updates

I missed that

DMP4est: fix transfer bad cids in serial

We were setting cids assuming that the root would be
updated, but it wasn't always, so we
compute the cids but only set when the root updates

I missed that when a parent is identified with a coarse point,
it is unconditionally accepted

show more ...

e3b5de9714-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest: no need for P4estCoordDim, as the geometry always gets 3 components

this is still broken

ac34a06f12-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest: add transfer from base

0bb9c5e812-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest: allow to derefine also the patterns set from the command line

bf2d5fbb12-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest: added DM_ADAPT_COARSEN_LAST to refine quadrants at the last level only

322bdd6012-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForestTransferVec: add missing cases

c1f5032608-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest: use custom DMCreateLocalVector to which provides the VECVIEW_OP

42eddcf801-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest: namespace tests with p4est so that they can be run with globsearch= queries

a13df41b07-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMPlex: Add PetscSF* return argument in DMPlexGetGatherDM() and DMPlexGetRedundantDM() as in DMPlexDistribute()

Added DMPlexGetGatherDM() to the public API

DMPlexGetRedundantDM: stratify SF

c13c09df20-Nov-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest: labels must be propagated even if the adaptLabel is not present

c98b175531-Oct-2018 Stefano Zampini <stefano.zampini@gmail.com>

DMForest: silent label error if a point with zero support which is not a cell is found in the star

Added option to print details
This seems a benign case, but probably may harm with very large runs?

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