forest - OpenGrok history log for /petsc/src/dm/impls/forest

Revision	Date	Author	Comments (<<< Hide modified files) (Show modified files >>>)
ba936b91	23-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	WIP: Simplify/correct adaptivity interface for DMForest /petsc/include/petsc/private/dmforestimpl.h /petsc/include/petscdmforest.h forest.c p4est/pforest.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/makefile
ebdf65a2	23-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMForest: switch adaptivity from an array of markers to label Now that labels are general, it makes more sense /petsc/include/petsc/private/dmforestimpl.h /petsc/include/petscdmforest.h forest.c
27d4645f	23-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMForest: added DMIsForest() and DMForestRegisterType() /petsc/include/petscdmforest.h forest.c p4est/petsc_p4est_package.c
eca41621	23-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMP4EST: c++ fixes /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petscdmplex.h /petsc/src/dm/dt/interface/dtds.c p4est/pforest.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/dm/impls/plex/plextree.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/makefile
50eeb1ca	16-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DM: added DMClearLocalVectors() /petsc/include/petscdm.h p4est/pforest.c /petsc/src/dm/interface/dmget.c
ca3eba1b	16-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	Fix reference counting in DMGlobalToLocalSolve() and DMProjectFieldLocal_Plex() p4est/pforest.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/ksp/ksp/utils/dmproject.c /petsc/src/snes/utils/dmplexsnes.c
1c58ffc4	16-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	Plex+Tree: small fixes to DMPlexComputeInterpolatorTree() /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MOAB.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/PaStiX.py /petsc/config/BuildSystem/config/packages/Trilinos.py /petsc/config/BuildSystem/config/packages/Zoltan.py /petsc/config/BuildSystem/config/packages/alquimia.py /petsc/config/BuildSystem/config/packages/amanzi.py /petsc/config/BuildSystem/config/packages/ascem-io.py /petsc/config/BuildSystem/config/packages/boost.py /petsc/config/BuildSystem/config/packages/concurrencykit.py /petsc/config/BuildSystem/config/packages/elemental.py /petsc/config/BuildSystem/config/packages/exodusii.py /petsc/config/BuildSystem/config/packages/make.py /petsc/config/BuildSystem/config/packages/mstk.py /petsc/config/BuildSystem/config/packages/pflotran.py /petsc/config/BuildSystem/config/packages/unittestcpp.py /petsc/config/BuildSystem/config/packages/viennacl.py /petsc/config/BuildSystem/config/programs.py /petsc/config/BuildSystem/config/sourceControl.py /petsc/config/BuildSystem/retrieval.py /petsc/config/PETSc/Configure.py /petsc/config/builder.py /petsc/config/configure.py /petsc/config/examples/arch-linux-gcc-ifc-cmplx.py /petsc/config/examples/arch-osx-xsdk-opt.py /petsc/config/examples/arch-pardiso.py /petsc/include/petsc/private/tsimpl.h /petsc/include/petscdmplex.h /petsc/include/petscpc.h /petsc/include/petscts.h /petsc/lib/petsc/conf/rules /petsc/src/dm/impls/da/dagetelem.c p4est/pforest.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plextree.c /petsc/src/docs/tex/petsc.bib /petsc/src/docs/website/documentation/linearsolvertable.html /petsc/src/docs/website/documentation/tutorials/index.html /petsc/src/docs/website/index.html /petsc/src/ksp/ksp/examples/tutorials/ex2.c /petsc/src/ksp/ksp/impls/cg/cgls.c /petsc/src/ksp/ksp/impls/lsqr/lsqr.c /petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c /petsc/src/mat/examples/tests/ex125.c /petsc/src/mat/examples/tests/ex9.c /petsc/src/mat/examples/tests/output/ex9_2.out /petsc/src/mat/examples/tests/output/ex9_3.out /petsc/src/mat/examples/tests/output/ex9_3_baij.out /petsc/src/mat/examples/tests/output/ex9_3_sbaij.out /petsc/src/mat/examples/tests/output/ex9_4_baij.out /petsc/src/mat/examples/tests/output/ex9_4_sbaij.out /petsc/src/mat/impls/aij/seq/umfpack/umfpack.c /petsc/src/snes/impls/vi/rs/virs.c /petsc/src/ts/examples/tutorials/makefile /petsc/src/ts/examples/tutorials/power_grid/ex3adj.c /petsc/src/ts/examples/tutorials/power_grid/ex3opt.c /petsc/src/ts/examples/tutorials/power_grid/ex3opt_fd.c /petsc/src/ts/examples/tutorials/power_grid/ex9adj.c /petsc/src/ts/examples/tutorials/power_grid/ex9opt.c /petsc/src/ts/examples/tutorials/power_grid/output/ex3opt_1.out /petsc/src/ts/examples/tutorials/power_grid/output/ex3opt_fd_1.out /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busopt.c /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/output/ex9busadj_1.out /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/output/ex9busopt_1.out /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/output/ex9busopt_fd_1.out /petsc/src/ts/impls/explicit/rk/rk.c /petsc/src/ts/impls/implicit/theta/theta.c /petsc/src/ts/interface/ts.c /petsc/src/ts/interface/tscreate.c /petsc/src/vec/is/is/utils/isdiff.c
6ecaa68a	13-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	WIP: DMPlexComputeInterpolatorTree() /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petscdmplex.h p4est/pforest.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plextree.c /petsc/src/ts/examples/tutorials/ex11.c
0bfe2a92	12-Feb-2016	Matthew G. Knepley <knepley@gmail.com>	Forest: Add an HDF5 viewer p4est/pforest.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/interface/dm.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex18.c
a6121fbd	11-Feb-2016	Matthew G. Knepley <knepley@gmail.com>	DMForest: Turn off -dm_refine for now forest.c /petsc/src/dm/impls/plex/plexsubmesh.c /petsc/src/ksp/ksp/utils/dmproject.c
646e8b9f	11-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMP4est: added childIds to GetTranserSF_Internal This will let me figure out which parts of the reference tree's constraint matrix to use. p4est/pforest.c
6281945f	11-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMP4est: Added DMPlexReferenceTreeGetChildSymmetry_p4est() This is needed to match up dofs when constructing interpolation/injection. p4est/pforest.c
61bbc431	11-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMP4est: move string declarations to function boilerplate p4est/pforest.c
61f0de6f	11-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMP4est: use a custom reference tree /petsc/include/petsc/private/dmpleximpl.h p4est/pforest.c /petsc/src/dm/impls/plex/plextree.c
90e2ccac	11-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMP4est: started DMCreateReferenceTree_p4est() This will simplify intergrid transfer. /petsc/include/petscdm.h p4est/pforest.c /petsc/src/dm/interface/dmget.c /petsc/src/ksp/ksp/utils/dmproject.c /petsc/src/ts/examples/tutorials/ex11.c
defc90f8	10-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMP4est: added bare-bones DMCoarsen_p4est() This just gets a reference to the coarseDM. We need to figure out the control flow for on-the-fly adaptive coarsening. /petsc/config/builder.py /petsc/include/petsc/private/petscdsimpl.h /petsc/include/petsc/private/petscfeimpl.h /petsc/include/petscdmplex.h /petsc/include/petscds.h /petsc/include/petscfe.h /petsc/include/petscfetypes.h /petsc/include/petscsnes.h /petsc/include/petscts.h /petsc/src/dm/dt/interface/dtds.c /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/dt/interface/dtfv.c p4est/pforest.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/interface/dm.c /petsc/src/snes/examples/tutorials/ex12.c /petsc/src/snes/examples/tutorials/ex62.c /petsc/src/snes/examples/tutorials/ex66.c /petsc/src/snes/examples/tutorials/ex69.c /petsc/src/snes/examples/tutorials/output/ex12_amr_0.out /petsc/src/snes/examples/tutorials/output/ex12_amr_1.out /petsc/src/snes/utils/dmlocalsnes.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/tao/examples/tutorials/ex1.c /petsc/src/tao/examples/tutorials/ex2.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex18.c /petsc/src/ts/examples/tutorials/output/ex11_p4est_advec_2d.out /petsc/src/ts/utils/dmlocalts.c /petsc/src/ts/utils/dmplexts.c
feea6839	05-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMP4est: introduce command line refinement options TODO: make them accessible via functions. examples/tutorials/ex1.c p4est/pforest.c /petsc/src/ts/examples/tutorials/ex11.c
92312bba	04-Feb-2016	Matthew G. Knepley <knepley@gmail.com>	Forest: Added simple viewer for pest p4est/pforest.c
d8984e3b	04-Feb-2016	Matthew G. Knepley <knepley@gmail.com>	Forest: Added DMCreateSubDM() support /petsc/config/builder.py /petsc/include/petscdm.h /petsc/include/petscfv.h /petsc/src/dm/dt/interface/dtfe.c forest.c /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexgenerate.c /petsc/src/dm/impls/plex/plexrefine.c /petsc/src/dm/interface/dm.c /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/output/ex11_sw_0.out /petsc/src/ts/examples/tutorials/output/ex18_adv_1.out /petsc/src/ts/examples/tutorials/output/ex18_adv_delta_yper_0.out /petsc/src/ts/examples/tutorials/output/ex18_adv_delta_yper_1.out /petsc/src/ts/examples/tutorials/output/ex18_adv_delta_yper_2.out /petsc/src/ts/examples/tutorials/output/ex18_adv_delta_yper_fim_0.out /petsc/src/ts/examples/tutorials/output/ex18_adv_delta_yper_fim_1.out /petsc/src/ts/examples/tutorials/output/ex18_adv_delta_yper_fim_2.out /petsc/src/ts/examples/tutorials/output/ex18_adv_gauss.out /petsc/src/ts/examples/tutorials/output/ex18_p1p1.out /petsc/src/ts/examples/tutorials/output/ex18_p1p1_xper.out /petsc/src/ts/examples/tutorials/output/ex18_p1p1_xper_ref.out /petsc/src/ts/examples/tutorials/output/ex18_p1p1_xyper.out /petsc/src/ts/examples/tutorials/output/ex18_p1p1_xyper_ref.out /petsc/src/ts/examples/tutorials/output/ex18_p2p1.out /petsc/src/ts/examples/tutorials/output/ex18_p2p1_xyper.out /petsc/src/ts/examples/tutorials/output/ex18_p2p1_xyper_ref.out
304e0063	03-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMP4est: pass periodicity p4est/pforest.c /petsc/src/dm/interface/dm.c /petsc/src/snes/examples/tutorials/output/ex12_42.out /petsc/src/snes/examples/tutorials/output/ex12_fas_newton_0.out /petsc/src/snes/examples/tutorials/output/ex12_tri_q2q1_asm_lu.out /petsc/src/snes/examples/tutorials/output/ex12_tri_q2q1_asm_sor.out /petsc/src/snes/examples/tutorials/output/ex12_tri_q2q1_msm_lu.out /petsc/src/snes/examples/tutorials/output/ex12_tri_q2q1_msm_sor.out /petsc/src/ts/examples/tutorials/ex11.c
01d9d024	03-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMForest: initialize more header functions when cloning /petsc/bin/petsc_gen_xdmf.py /petsc/include/petsc/private/dmforestimpl.h forest.c p4est/pforest.c /petsc/src/ts/examples/tutorials/ex11.c
6da023fc	02-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMP4est/DMPlex: Share DMSNES/DMTS information when converting This includes "A", "dmAux" and "dmCh" for now. p4est/pforest.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/interface/dm.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/ts/utils/dmplexts.c
1189c1ef	02-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMComputeL2FieldDiff(): fixes, DMP4EST implementation /petsc/bin/maint/checkBuilds.py /petsc/bin/maint/confignightly/grind3 /petsc/bin/maint/confignightly/ipro4 /petsc/bin/maint/wwwindex.py /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/Trilinos.py /petsc/config/BuildSystem/config/packages/boost.py /petsc/config/BuildSystem/config/packages/f2cblaslapack.py /petsc/config/BuildSystem/config/packages/fblaslapack.py /petsc/config/BuildSystem/config/packages/metis.py /petsc/config/BuildSystem/config/packages/parmetis.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/revolve.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/BuildSystem/retrieval.py /petsc/config/BuildSystem/script.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/Regression.py /petsc/config/PETSc/options/dataFilesPath.py /petsc/config/examples/arch-linux-xsdk-dbg.py /petsc/config/examples/arch-osx-xsdk-opt.py /petsc/include/petsc/finclude/ftn-custom/petscmat.h90 /petsc/include/petsc/mpiuni/mpi.h /petsc/include/petsc/private/dmimpl.h /petsc/include/petsc/private/dmnetworkimpl.h /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/kernels/blockinvert.h /petsc/include/petsc/private/petscfvimpl.h /petsc/include/petsc/private/tsimpl.h /petsc/include/petsc/private/viewerimpl.h /petsc/include/petscblaslapack.h /petsc/include/petscblaslapack_mangle.h /petsc/include/petsccusp.h /petsc/include/petscdm.h /petsc/include/petscdmplex.h /petsc/include/petscfv.h /petsc/include/petscksp.h /petsc/include/petscmat.h /petsc/include/petscmath.h /petsc/include/petscpc.h /petsc/include/petscts.h /petsc/include/petscvec.h /petsc/include/petscviewer.h /petsc/lib/petsc/conf/rules /petsc/lib/petsc/conf/test /petsc/share/petsc/saws/linearsolveroptions.html /petsc/src/dm/dt/interface/dt.c /petsc/src/dm/dt/interface/dtfv.c /petsc/src/dm/examples/tests/ex21.c /petsc/src/dm/examples/tests/ex23.c /petsc/src/dm/examples/tests/ex36.c /petsc/src/dm/examples/tutorials/ex7.c /petsc/src/dm/impls/da/gr2.c p4est/pforest.c /petsc/src/dm/impls/network/network.c /petsc/src/dm/impls/network/networkmonitor.c /petsc/src/dm/impls/plex/examples/tests/ex15.c /petsc/src/dm/impls/plex/examples/tutorials/ex1.c /petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexgeometry.c /petsc/src/dm/impls/plex/plexnatural.c /petsc/src/dm/impls/plex/plexrefine.c /petsc/src/dm/impls/plex/plexvtu.c /petsc/src/dm/interface/dm.c /petsc/src/docs/tex/manual/part2.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/docs/website/documentation/changes/34.html /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/docs/website/documentation/nonlinearsolvertable.html /petsc/src/ksp/ksp/examples/tests/ex17.c /petsc/src/ksp/ksp/examples/tests/ex22.c /petsc/src/ksp/ksp/examples/tests/makefile /petsc/src/ksp/ksp/examples/tests/output/ex17_1.out /petsc/src/ksp/ksp/examples/tests/output/ex17_superlu_dist.out /petsc/src/ksp/ksp/examples/tutorials/ex10.c /petsc/src/ksp/ksp/examples/tutorials/ex4.c /petsc/src/ksp/ksp/examples/tutorials/ex52.c /petsc/src/ksp/ksp/examples/tutorials/ex54.c /petsc/src/ksp/ksp/examples/tutorials/ex55.c /petsc/src/ksp/ksp/examples/tutorials/ex56.c /petsc/src/ksp/ksp/impls/bcgs/bcgs.c /petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c /petsc/src/ksp/ksp/impls/cg/cg.c /petsc/src/ksp/ksp/impls/cgs/cgs.c /petsc/src/ksp/ksp/impls/cr/cr.c /petsc/src/ksp/ksp/impls/fcg/fcg.c /petsc/src/ksp/ksp/impls/gcr/gcr.c /petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c /petsc/src/ksp/ksp/impls/gmres/gmres.c /petsc/src/ksp/ksp/impls/gmres/lgmres/lgmres.c /petsc/src/ksp/ksp/impls/lcd/lcd.c /petsc/src/ksp/ksp/impls/lsqr/lsqr.c /petsc/src/ksp/ksp/impls/qcg/qcg.c /petsc/src/ksp/ksp/impls/rich/rich.c /petsc/src/ksp/ksp/impls/tcqmr/tcqmr.c /petsc/src/ksp/ksp/impls/tfqmr/tfqmr.c /petsc/src/ksp/ksp/interface/iguess.c /petsc/src/ksp/ksp/interface/itcl.c /petsc/src/ksp/ksp/interface/itres.c /petsc/src/ksp/ksp/utils/dmproject.c /petsc/src/ksp/ksp/utils/schurm.c /petsc/src/ksp/pc/impls/asm/asm.c /petsc/src/ksp/pc/impls/bddc/bddcprivate.c /petsc/src/ksp/pc/impls/bicgstabcusp/bicgstabcusp.cu /petsc/src/ksp/pc/impls/factor/icc/icc.c /petsc/src/ksp/pc/impls/factor/ilu/ilu.c /petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c /petsc/src/ksp/pc/impls/gamg/agg.c /petsc/src/ksp/pc/impls/gamg/gamg.c /petsc/src/ksp/pc/impls/gasm/gasm.c 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5e76b9b5	01-Feb-2016	Matthew G. Knepley <knepley@gmail.com>	DMForest: Add specific Clone for pest p4est/pforest.c
6ca4f45b	01-Feb-2016	Toby Isaac <tisaac@uchicago.edu>	DMP4est: revamp operating without a base DM - Construct a ghost label in this case - Make reading a brick connectivity more full featured p4est/pforest.c /petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F /petsc/src/ts/examples/tutorials/ex11.c
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