History log of /petsc/src/dm/impls/forest/ (Results 426 – 450 of 492)
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ced2bf5431-Jan-2016 Toby Isaac <tisaac@uchicago.edu>

DMP4est: fix label/ghost interaction with internal plex representation

We have to create labels for the internal plex, construct the ghost
cells, and then copy the labels back from the ghosted plex.

95109d7d29-Jan-2016 Toby Isaac <tisaac@uchicago.edu>

DMP4est: add Vec viewers and loaders via plex

These can be replaced with p4est native vtk routines if need be, but
that would require my digging into the layout of dofs to vertices,
cells, etc., whi

DMP4est: add Vec viewers and loaders via plex

These can be replaced with p4est native vtk routines if need be, but
that would require my digging into the layout of dofs to vertices,
cells, etc., which I don't want to do right now.

show more ...

da20d33029-Jan-2016 Toby Isaac <tisaac@uchicago.edu>

DMP4est: cleanup

9892fe0529-Jan-2016 Toby Isaac <tisaac@uchicago.edu>

DMP4est: also share value map in DMShareDiscretization()

084eabfa29-Jan-2016 Toby Isaac <tisaac@uchicago.edu>

DMP4est: stop using DMPlex to get global vectors.

It creates confusion in VecGetDM(), and it's only advantage right now is
the ability to piggyback off of the VecView*() routines that plex
implement

DMP4est: stop using DMPlex to get global vectors.

It creates confusion in VecGetDM(), and it's only advantage right now is
the ability to piggyback off of the VecView*() routines that plex
implements. We can put those back in later if needed.

show more ...

939f4e2929-Jan-2016 Toby Isaac <tisaac@uchicago.edu>

DMP4est: share point sf of ghosted plex back to p4est

Even though the ghosted cells aren't really present for the p4est, right
now all numbering has to coordinate between the two.

254abd1826-Jan-2016 Toby Isaac <tisaac@uchicago.edu>

DMP4est: share application context with ghosted plex

In ts ex11, I now have to address the fact that there is plex specific
stuff in SetInitialCondition(). Work on that tomorrow.

d2f4456326-Jan-2016 Toby Isaac <tisaac@uchicago.edu>

DMP4est: use DMLabelGetValue, since this doesn't need to build the index

1f40fbf725-Jan-2016 Toby Isaac <tisaac@uchicago.edu>

DMP4est: do not loop over ghost support cells

a3eda1ea25-Jan-2016 Toby Isaac <tisaac@uchicago.edu>

DMP4est: first pass at accounting for ghost cells

6aa884bb25-Jan-2016 Toby Isaac <tisaac@uchicago.edu>

ts ex11: start mesh conversion code

Doesn't work yet. All plex<->p4est code has assumed no ghost cells thus
far. I still conjecture the FV can be implemented just as efficiently
without ghost cell

ts ex11: start mesh conversion code

Doesn't work yet. All plex<->p4est code has assumed no ghost cells thus
far. I still conjecture the FV can be implemented just as efficiently
without ghost cells, but my options right now are (a) try to replace
ghost cells, then address plex<->p4est fv concerns, or (b) make
plex<->p4est fv work for ghost cells. Given the time constraints, I'm
going to go for the latter and hope that I can convince people that
removing ghost cells is worthwhile in the future.

show more ...

8cbeb62e14-Jan-2016 Matthew G. Knepley <knepley@gmail.com>

Forest: Fixed memory leak


/petsc/bin/maint/builddist
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/petsc/src/dm/impls/da/dacreate.c
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p4est/pforest.c
/petsc/src/dm/impls/plex/examples/tests/ex2f90.F
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/petsc/src/ksp/ksp/impls/cg/cgls.c
/petsc/src/ksp/ksp/impls/cg/cgne/cgne.c
/petsc/src/ksp/ksp/impls/cg/makefile
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/petsc/src/ts/impls/arkimex/arkimex.c
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/petsc/src/ts/interface/dlregists.c
/petsc/src/ts/interface/ftn-custom/ztsf.c
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36cda41c20-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMP4est: fix symmetry operations

- DMP8est face orientation table had a missing minus sign
- I had the order of the DihedralCompose operands reversed. It's tough
to keep track of covariant/contra

DMP4est: fix symmetry operations

- DMP8est face orientation table had a missing minus sign
- I had the order of the DihedralCompose operands reversed. It's tough
to keep track of covariant/contravariant sometimes.

show more ...

ba07f42519-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMP4est: fix uninitialized roots in PetscSFReduce

0a6bd6be18-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMP8est: fix indexing in DMPforestLabelsInitialize()

917ccca418-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMP8est: fix bad indexing when creating connectivity

0709b2fe15-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

Merge remote-tracking branch 'origin/knepley/feature-plex-add-time' into tisaac/dmforest

Both branches changeds DM projection behavior, so I wanted to sort it
out before merging

* origin/knepley/fe

Merge remote-tracking branch 'origin/knepley/feature-plex-add-time' into tisaac/dmforest

Both branches changeds DM projection behavior, so I wanted to sort it
out before merging

* origin/knepley/feature-plex-add-time: (59 commits)
SNES ex69: Updated to new function API, fixed test output
SNES ex75: Fixed for new function API
add fortran stub for TSMonitorLGSetTransform() and fix TSMonitorLG for multiple fields but no names provided for fields
add -binary_write_double so __float128 precision can save as double to binary files
TSClone() did not clone Fortran function pointers hence some TS methods would fail if functions provided in Fortan
petsc4py: update to snapshot with 'barry/petscoptions-object' changes
fix bad merge that introduced 2 copies of the MPI_Comm_free()
update example to use MAT_INPLACE_MATRIX, not REUSE
incorrect addition of float to PetscInt
update for new PetscOptions API
TS ex18: Fixed function API and test output
Function now takes PetscOptions as first argument, this was missed during the first round of updates
bugfix for MatSetOption_Elemental()
fix test example no change output that was missing a line
fixes for new PetscOptions.. API that are needed based on problems with nightly build
Plex ex3: Use new function API
SNES ex62: Use new function API
SNES ex12: Use new function API
Plex: Fixed unused options in examples
Plex+DMDA: Add time to signatures
...

show more ...


/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/builder.py
/petsc/include/petsc/finclude/petscsysdef.h
/petsc/include/petsc/private/dmforestimpl.h
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/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/kspimpl.h
/petsc/include/petsc/private/linesearchimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/pcgamgimpl.h
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/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/sfimpl.h
/petsc/include/petsc/private/snesimpl.h
/petsc/include/petsc/private/taoimpl.h
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/petsc/include/petscdm.h
/petsc/include/petscdmda.h
/petsc/include/petscdmplex.h
/petsc/include/petscfe.h
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/petsc/include/petscvec.h
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/petsc/lib/petsc/conf/bfort-petsc.txt
/petsc/src/benchmarks/PetscVecNorm.c
/petsc/src/benchmarks/streams/SSEVersion.c
/petsc/src/contrib/fun3d/comp/flow.c
/petsc/src/contrib/fun3d/incomp/flow.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfe.c
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/petsc/src/dm/examples/tests/ex1.c
/petsc/src/dm/examples/tests/ex10.c
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/petsc/src/dm/examples/tests/ex17.c
/petsc/src/dm/examples/tests/ex19.c
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/petsc/src/dm/examples/tests/ex21.c
/petsc/src/dm/examples/tests/ex22.c
/petsc/src/dm/examples/tests/ex23.c
/petsc/src/dm/examples/tests/ex27.c
/petsc/src/dm/examples/tests/ex28.c
/petsc/src/dm/examples/tests/ex3.c
/petsc/src/dm/examples/tests/ex33.c
/petsc/src/dm/examples/tests/ex34.c
/petsc/src/dm/examples/tests/ex35.c
/petsc/src/dm/examples/tests/ex36.c
/petsc/src/dm/examples/tests/ex38.c
/petsc/src/dm/examples/tests/ex39.c
/petsc/src/dm/examples/tests/ex4.c
/petsc/src/dm/examples/tests/ex40.c
/petsc/src/dm/examples/tests/ex41.c
/petsc/src/dm/examples/tests/ex6.c
/petsc/src/dm/examples/tests/ex7.c
/petsc/src/dm/examples/tests/ex8.c
/petsc/src/dm/examples/tests/ex9.c
/petsc/src/dm/examples/tutorials/ex1.c
/petsc/src/dm/examples/tutorials/ex12.c
/petsc/src/dm/examples/tutorials/ex13f90.F90
/petsc/src/dm/examples/tutorials/ex14.c
/petsc/src/dm/examples/tutorials/ex15.c
/petsc/src/dm/examples/tutorials/ex2.c
/petsc/src/dm/examples/tutorials/ex3.c
/petsc/src/dm/examples/tutorials/ex5.c
/petsc/src/dm/examples/tutorials/output/ex13f90.out
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/composite/packm.c
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/da/da1.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/dapreallocate.c
/petsc/src/dm/impls/da/gr1.c
/petsc/src/dm/impls/da/gr2.c
forest.c
p4est/petsc_p4est_package.c
p4est/pforest.c
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/network/networkcreate.c
/petsc/src/dm/impls/patch/patchcreate.c
/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/output/ex16_0.out
/petsc/src/dm/impls/plex/examples/tutorials/ex1.c
/petsc/src/dm/impls/plex/examples/tutorials/ex1f90.F
/petsc/src/dm/impls/plex/examples/tutorials/ex3f90.F
/petsc/src/dm/impls/plex/examples/tutorials/output/ex2_4.out
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8fe44a9b11-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMP4est: Set internal plex from options

7a8872f411-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMP4est: fix DMPforestLabelsInitialize()

For non-cells, I was always taking the "it's on the outside of the tree"
path, instead of checking whether the points were in the interior of the
tree first.

bcc5ffd910-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMBoundary: Give the link list a reference counter like DMLabel

This allows behind the scenes sharing of boundaries in DMP4est with a
DMPlex representation.

4f2dab7610-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMPforestLabelsInitialize(): don't transfer depth label

6b847ec609-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMForest: aliases for -dm_refine and -dm_refine_hierarchy to match DMPlex

d3a56ea509-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMP4est: label transfer does not throw an error (in serial in 2D)

remove code that was accidentally left commented out

155051c909-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMP4est: share constraint matrix with plex

e0b3996a09-Dec-2015 Toby Isaac <tisaac@uchicago.edu>

DMP4est: fix P4estFaceToPetscFace

Was not the inverse permutation of PetscFaceToP4estFace before, now it
is.

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