Merged in barry/update-collective-on (pull request #1744)

Update the use of Collective on in the manual pages to reflect the new style

Merged in knepley/fix-subdm-multiple-ds (pull request #1701)

Knepley/fix subdm multiple ds

Merged in knepley/feature-dualspace-bdm (pull request #1699)

Knepley/feature dualspace bdm

Update the use of Collective on in the manual pages to reflect the new style

Commit-type: style-fix, documentation
Thanks-to: Patrick Sanan <patrick.sanan@gmail.com>

Man pages: remove .keywords: fields

This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),
but it doesn't seem to be unif

Man pages: remove .keywords: fields

This field is recognized by doctext from Sowing (http://wgropp.cs.illinois.edu/projects/software/sowing/doctext/node20.htm#Node20),
but it doesn't seem to be uniformly used or maintained.

Thus, remove all .keywords: fields, and a following blank line, if present.

This is accomplished with GNU sed (gsed on OS X), with the following commands.
*Warning* that this type of command can corrupt a .git directory,
so be cautious in reusing or modifying these commands. They first look
for and delete matching lines with a following line consisting of only whitespace,
and then delete any remaining matching lines.

find src/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} +
find src/ -type f -exec gsed -i '/keywords:/d' {} +
find include/ -type f -exec gsed -i '/keywords:/ {N; /\n\s*$/d}' {} +
find include/ -type f -exec gsed -i '/keywords:/d' {} +

Hints on the sed command obtained from: https://unix.stackexchange.com/questions/100754/how-to-delete-a-specific-line-and-the-following-blank-line-using-gnu-sed

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DM: Fix bug with out of range access

DM: Add field table to hybrid DS

DM: Translate for fields to field indices in CreateSubDM()

Merged in Patrick-Sanan/dmc-edited-online-with-bitbucket-1558528830874 (pull request #1694)

DM docs: remove DMHasFunction from man page .seealso fields

Approved-by: Satish Balay <balay@mcs.anl.gov>

DM docs: remove DMHasFunction from man page .seealso fields

PetscDualSpace: Add a BDM implementation

Fixed out-dated URLS using make checkbadURLS REPLACE=1

One manual fix of https://en.wikipedia.org/wiki/Buckingham_π_theorem since the automatic tool dropped the first _ for some reason
Manual fix of

Fixed out-dated URLS using make checkbadURLS REPLACE=1

One manual fix of https://en.wikipedia.org/wiki/Buckingham_π_theorem since the automatic tool dropped the first _ for some reason
Manual fix of //faq.html since the automatic tool incorrectly replaced /faq.html to //faq.html in some locations

These are largely updates of http to https but have a variety of other website location changes

Once this branch is in master individual developers can run make checkbadURLS and fix URLs related to their projects manually

Commit-type: bug-fix, documentation

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DMPLEX: add few missing events to help optimizing the code

DMGetDimPoints man page: output parameters format fix

Doc+Plex: Added notes on function use
- Added collective doc

DM: Add ability to specify different global and local bases
- The global basis is for solving and applying BC
- The local basis is for assembly
- We transform bases in DMLocalToGlobal() and DMGlobalT

DM: Add ability to specify different global and local bases
- The global basis is for solving and applying BC
- The local basis is for assembly
- We transform bases in DMLocalToGlobal() and DMGlobalToLocal()
- Added a default implementation which does a rotation
- Transform functions used in BC and exact solutions, which we assume operate in the global basis
- Transform functions used in projection, which we assume operate in the global basis
- Transform Jacobian values to the global basis before insertion
- Transform coordinates to global basis when calling out projection, BC, and exact solution functions
- Copy transforms when forming a hierarchy
- Added many tiny LA things (Eigen is no longer a good dependency)

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DM: Don't let this little IS get caught up in the dragnet of -is_view

DM: Fixed selecting DS equations in DMCreateSubDM()

DM: Add translation between DM field numbers and DS field numbers
- Changed interface for DMGet/SetRegionDS(), DMGetRegionNumDS()

Merge branch 'maint'

Docs: DMGetCompatibility man page typo fixes

Merged in florianwechsung/petsc/fw/vertexrebalancing (pull request #1421)

DMPLEX/PCPATCH: Rebalancing shared points on parallel interfaces

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
Approved-by:

Merged in florianwechsung/petsc/fw/vertexrebalancing (pull request #1421)

DMPLEX/PCPATCH: Rebalancing shared points on parallel interfaces

Approved-by: BarryFSmith <bsmith@mcs.anl.gov>
Approved-by: Lawrence Mitchell <wence@gmx.li>

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add ability to perform the rebalancing in serial, add timings

DM: Expose creation functions for subdm and superdm from a Section

Merge remote-tracking branch 'origin/jczhang/vecscat-in-sf' [PR #1396]