interface - OpenGrok history log for /petsc/src/dm/interface

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d13c9127	29-Mar-2018	Karl Rupp <me@karlrupp.net>	Merge branch 'karlrupp/feature-remove-cusp' * karlrupp/feature-remove-cusp: Removes VECCUSP vectors and AIJCUSP matrices, because they provide no added benefit over VECCUDA and AIJCUSPARSE. Also rem Merge branch 'karlrupp/feature-remove-cusp' * karlrupp/feature-remove-cusp: Removes VECCUSP vectors and AIJCUSP matrices, because they provide no added benefit over VECCUDA and AIJCUSPARSE. Also removes the CUSP-based preconditioners for now. SACUSP will be re-added later, after the new release is out. show more ... /petsc/.travis.yml /petsc/bitbucket-pipelines.yml /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/make.py /petsc/config/PETSc/Configure.py /petsc/config/cmakegen.py /petsc/config/example_template.py /petsc/config/gmakegen.py /petsc/config/gmakegentest.py /petsc/config/install.py /petsc/config/petsc_harness.sh /petsc/config/testparse.py /petsc/gmakefile /petsc/gmakefile.test /petsc/include/petsc/finclude/petscmat.h /petsc/include/petsc/finclude/petscpc.h /petsc/include/petsc/finclude/petscvec.h /petsc/include/petsc/private/dmdaimpl.h /petsc/include/petsc/private/dmswarmimpl.h /petsc/include/petsc/private/matimpl.h /petsc/include/petsc/private/petscimpl.h /petsc/include/petsc/private/vecimpl.h /petsc/include/petscdmda.h /petsc/include/petscdraw.h /petsc/include/petscmat.h /petsc/include/petscmath.h /petsc/include/petscpc.h /petsc/include/petscpctypes.h 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07504f36	27-Mar-2018	Karl Rupp <me@karlrupp.net>	Merge branch 'pr872/bourdin/dmplex-GlobalToNatural/master' * pr872/bourdin/dmplex-GlobalToNatural/master: Makes a subDM inherit the NaturalToGlobal SF from their parent upon creation. /petsc/.travis.yml /petsc/bitbucket-pipelines.yml /petsc/config/BuildSystem/config/packages/ctetgen.py /petsc/config/BuildSystem/config/packages/mkl_sparse_sp2m.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/installDir.py /petsc/config/PETSc/options/petscdir.py /petsc/config/examples/arch-cray-xc40-knl-opt.py /petsc/config/examples/arch-linux-knl.py /petsc/config/gmakegentest.py /petsc/config/install.py /petsc/include/petsc/private/dmimpl.h /petsc/include/petsc/private/kspimpl.h /petsc/include/petsc/private/sfimpl.h /petsc/include/petscdmplex.h /petsc/include/petscksp.h /petsc/include/petscsf.h /petsc/include/petscversion.h /petsc/lib/petsc/bin/maint/builddist 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e9e886b6	27-Mar-2018	Karl Rupp <me@karlrupp.net>	CUSP: Removed VECCUSP and AIJCUSP as well as preconditioners. 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6294108e	19-Mar-2018	Toby Isaac <tisaac@cc.gatech.edu>	Merge remote-tracking branch 'origin/knepley/fix-snes-ex69' into tisaac/feature-dmfield * origin/knepley/fix-snes-ex69: (311 commits) PetscFECreateDefault: fix custom Fortran interface to use MPI_ Merge remote-tracking branch 'origin/knepley/fix-snes-ex69' into tisaac/feature-dmfield * origin/knepley/fix-snes-ex69: (311 commits) PetscFECreateDefault: fix custom Fortran interface to use MPI_Comm SNES ex69: Updated test output SNES ex69: Removed all mantle stuff and change fields to constants - Also use dsymutil for executables SNES ex69: Removed special partition SNES ex69: Fixed null space creation - Null space locks its vectors PetscFE: PetscFECreateDefault() now takes MPI_Comm instead of DM cleanup very ugly PCGAMG manual page minor clarifications for VecScatterCreate() manual page gcov: PETSC_ARCH is required onlyfor -run_gcov - and not for -merge_gcov [where it doesn't exist] make clearer in help statements what --with-external-packages-dir is for. Website: Added news entry for PETSc User Meeting 2018 on main page. CUDA: Further test output fixes for mat_tests-ex2 Turn off elemental test for parmetis running since this does not work on batch systems. 3.8 Changes: KSPCHEBYSHEV CUDA: Fixed most test errors due to MatMultTranspose* website: update urls website: fix Jason's name to match pic. Also add Todd's pic Dev manual: copyedit DMPlexDistributeLabels: Propagate the output flag cuda/cusp: update minimum supported versions of cuda to 7.5 and cusp to 0.5.0 ... show more ... /petsc/.gitignore /petsc/.travis.yml /petsc/bitbucket-pipelines.yml /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/cusp.py /petsc/config/BuildSystem/config/packages/elemental.py /petsc/config/BuildSystem/config/packages/exodusii.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/pnetcdf.py /petsc/config/BuildSystem/config/packages/sowing.py 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/petsc/src/vec/is/is/interface/ftn-custom/zindexf.c /petsc/src/vec/is/is/utils/iscomp.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/vec/examples/tests/ex11.c /petsc/src/vec/vec/examples/tests/ex15.c /petsc/src/vec/vec/examples/tests/ex16.c /petsc/src/vec/vec/examples/tests/ex29.c /petsc/src/vec/vec/examples/tests/output/ex15_1.out /petsc/src/vec/vec/examples/tests/output/ex16_1.out /petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu /petsc/src/vec/vec/impls/mpi/mpicusp/mpicusp.cu /petsc/src/vec/vec/impls/mpi/pbvec.c /petsc/src/vec/vec/impls/mpi/pdvec.c /petsc/src/vec/vec/impls/seq/bvec2.c /petsc/src/vec/vec/impls/seq/dvec2.c /petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c /petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu /petsc/src/vec/vec/impls/seq/seqcusp/veccusp2.cu /petsc/src/vec/vec/interface/rvector.c /petsc/src/vec/vec/utils/vscat.c
46a3a80f	19-Mar-2018	Lisandro Dalcin <dalcinl@gmail.com>	DMGetCoordinatesLocalized(): Fix out-of-range access to section In passing, let's make that piece of code slightly more readable. Coordinate localization and periodicity should not be confused, thi DMGetCoordinatesLocalized(): Fix out-of-range access to section In passing, let's make that piece of code slightly more readable. Coordinate localization and periodicity should not be confused, this routine contains a hideous optimization assuming that non-periodic meshes don do not have localized coordinates. This has to be fixed! show more ... /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/cusp.py /petsc/config/BuildSystem/config/packages/elemental.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/arch.py /petsc/config/PETSc/options/installDir.py /petsc/config/configure.py /petsc/config/examples/arch-cuda-double.py /petsc/config/examples/arch-cuda-single.py /petsc/config/install.py /petsc/include/petsctao.h /petsc/lib/petsc/bin/maint/buildconfigtest /petsc/lib/petsc/bin/maint/builddist /petsc/lib/petsc/bin/maint/buildtest /petsc/lib/petsc/bin/maint/findvisibleprivatefunctions /petsc/lib/petsc/bin/maint/gcov.py /petsc/lib/petsc/bin/maint/htmltemplate.py /petsc/lib/petsc/bin/maint/runhtml.py /petsc/lib/petsc/bin/maint/startnightly /petsc/lib/petsc/bin/maint/startnightly.tao /petsc/makefile /petsc/src/benchmarks/benchmarkBatch.py /petsc/src/dm/impls/plex/examples/tutorials/ex5.c /petsc/src/dm/impls/plex/examples/tutorials/output/ex5_new_dm_view.out /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexdistribute.c /petsc/src/dm/impls/plex/plexhdf5.c dm.c /petsc/src/docs/tex/manual/developers.tex /petsc/src/docs/website/documentation/changes/38.html /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/docs/website/documentation/installation.html /petsc/src/docs/website/images/todd.jpg /petsc/src/docs/website/index.html /petsc/src/docs/website/miscellaneous/index.html /petsc/src/ksp/ksp/examples/tutorials/ex27.c /petsc/src/ksp/pc/impls/gamg/gamg.c /petsc/src/ksp/pc/interface/precon.c /petsc/src/mat/examples/tests/ex2.c /petsc/src/mat/examples/tests/ex5.c /petsc/src/mat/examples/tests/output/ex2_23.out /petsc/src/mat/examples/tests/output/ex5_11_A.out /petsc/src/mat/examples/tests/output/ex5_11_B.out /petsc/src/mat/examples/tests/output/ex5_21.out /petsc/src/mat/examples/tests/output/ex5_23.out /petsc/src/mat/examples/tests/output/ex5_31.out /petsc/src/mat/examples/tests/output/ex5_33.out /petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu /petsc/src/mat/impls/aij/seq/seqcusparse/cusparsematimpl.h /petsc/src/sys/classes/viewer/impls/binary/binv.c /petsc/src/sys/examples/tests/ex19.c /petsc/src/sys/fileio/sysio.c /petsc/src/tao/bound/examples/tutorials/jbearing2.c /petsc/src/tao/bound/examples/tutorials/output/jbearing2_5.out /petsc/src/tao/bound/examples/tutorials/output/plate2_8.out /petsc/src/tao/bound/examples/tutorials/plate2.c /petsc/src/tao/bound/impls/blmvm/blmvm.c /petsc/src/tao/bound/impls/bqpip/bqpip.c /petsc/src/tao/bound/impls/gpcg/gpcg.c /petsc/src/tao/bound/impls/makefile /petsc/src/tao/bound/impls/pgd/makefile /petsc/src/tao/bound/impls/pgd/pgd.c /petsc/src/tao/bound/impls/pgd/pgd.h /petsc/src/tao/bound/impls/tron/tron.c /petsc/src/tao/complementarity/examples/tutorials/output/minsurf1_2_alt.out /petsc/src/tao/complementarity/impls/asls/asfls.c /petsc/src/tao/complementarity/impls/asls/asils.c /petsc/src/tao/complementarity/impls/ssls/ssfls.c /petsc/src/tao/complementarity/impls/ssls/ssils.c /petsc/src/tao/constrained/examples/tutorials/output/toy_1.out /petsc/src/tao/constrained/examples/tutorials/output/toyf_1.out /petsc/src/tao/constrained/examples/tutorials/toy.c /petsc/src/tao/constrained/examples/tutorials/toyf.F90 /petsc/src/tao/constrained/impls/ipm/ipm.c /petsc/src/tao/interface/taosolver.c /petsc/src/tao/interface/taosolverregi.c /petsc/src/tao/leastsquares/impls/pounders/pounders.c /petsc/src/tao/pde_constrained/impls/lcl/lcl.c /petsc/src/tao/unconstrained/examples/tutorials/rosenbrock2.c /petsc/src/tao/unconstrained/impls/bmrm/bmrm.c /petsc/src/tao/unconstrained/impls/cg/taocg.c /petsc/src/tao/unconstrained/impls/lmvm/lmvm.c /petsc/src/tao/unconstrained/impls/neldermead/neldermead.c /petsc/src/tao/unconstrained/impls/nls/nls.c /petsc/src/tao/unconstrained/impls/ntl/ntl.c /petsc/src/tao/unconstrained/impls/ntr/ntr.c /petsc/src/tao/unconstrained/impls/owlqn/owlqn.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/vec/utils/vscat.c
3dcd263c	08-Mar-2018	Blaise Bourdin <bourdin@lsu.edu>	dmplex: construct sfNaturalToGlobal in DMCreateSuperDM_Plex if any of the input DM has useNatural set /petsc/src/dm/impls/plex/examples/tests/ex26.c /petsc/src/dm/impls/plex/plex.c dmi.c
736995cd	05-Mar-2018	Blaise Bourdin <bourdin@lsu.edu>	DM: only create sfMigration if useNatural is true Add reference counting on sfMigration so that it can be shared between subDMs /petsc/src/dm/impls/plex/examples/tests/ex26.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexdistribute.c /petsc/src/dm/impls/plex/plexnatural.c dm.c
8833efb5	05-Mar-2018	Blaise Bourdin <bourdin@lsu.edu>	DM: pass naturaltoglobal SF to sub and superDM fix bug with 64bit integers bugs in DMplex fix bug in exodus view /petsc/src/dm/impls/plex/examples/tests/ex26.c dm.c
d5af271a	06-Mar-2018	Matthew G. Knepley <knepley@gmail.com>	DM: DMCreateSubDM() should propagate the coarse mesh and DS properly /petsc/include/petsc/private/petscdsimpl.h /petsc/include/petscds.h /petsc/src/dm/dt/interface/dtds.c dmi.c /petsc/src/snes/utils/dmlocalsnes.c
18c5b227	12-Feb-2018	Matthew G. Knepley <knepley@gmail.com>	DM: Do not allow a locked vector to be restored /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/cusp.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/arch.py /petsc/config/PETSc/options/installDir.py /petsc/config/configure.py /petsc/config/examples/arch-cuda-double.py /petsc/config/install.py /petsc/include/petsctao.h /petsc/lib/petsc/bin/maint/buildconfigtest /petsc/lib/petsc/bin/maint/builddist /petsc/lib/petsc/bin/maint/buildtest /petsc/lib/petsc/bin/maint/findvisibleprivatefunctions /petsc/lib/petsc/bin/maint/htmltemplate.py /petsc/lib/petsc/bin/maint/runhtml.py /petsc/lib/petsc/bin/maint/startnightly /petsc/lib/petsc/bin/maint/startnightly.tao /petsc/makefile /petsc/src/benchmarks/benchmarkBatch.py /petsc/src/dm/impls/plex/examples/tutorials/ex5.c /petsc/src/dm/impls/plex/examples/tutorials/output/ex5_new_dm_view.out dmget.c /petsc/src/docs/tex/manual/developers.tex /petsc/src/docs/website/images/todd.jpg /petsc/src/docs/website/miscellaneous/index.html /petsc/src/ksp/ksp/examples/tutorials/ex27.c /petsc/src/sys/classes/viewer/impls/binary/binv.c /petsc/src/sys/examples/tests/ex19.c /petsc/src/sys/fileio/sysio.c /petsc/src/tao/bound/examples/tutorials/jbearing2.c /petsc/src/tao/bound/examples/tutorials/output/jbearing2_5.out /petsc/src/tao/bound/examples/tutorials/output/plate2_8.out /petsc/src/tao/bound/examples/tutorials/plate2.c /petsc/src/tao/bound/impls/makefile /petsc/src/tao/bound/impls/pgd/makefile /petsc/src/tao/bound/impls/pgd/pgd.c /petsc/src/tao/bound/impls/pgd/pgd.h /petsc/src/tao/bound/impls/tron/tron.c /petsc/src/tao/complementarity/examples/tutorials/output/minsurf1_2_alt.out /petsc/src/tao/interface/taosolverregi.c /petsc/src/tao/unconstrained/examples/tutorials/rosenbrock2.c /petsc/src/tao/unconstrained/impls/lmvm/lmvm.c /petsc/src/vec/is/sf/interface/sf.c
a6216909	22-Feb-2018	Toby Isaac <tisaac@cc.gatech.edu>	wip: implement DMFieldEvaluate_DS() /petsc/include/petsc/private/dmfieldimpl.h /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/petscfeimpl.h /petsc/include/petscdmplex.h /petsc/include/petscfe.h /petsc/include/petscsnes.h /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/field/examples/tutorials/output/ex1_ds.out /petsc/src/dm/field/impls/ds/dmfieldds.c /petsc/src/dm/field/interface/dmfield.c /petsc/src/dm/impls/da/dalocal.c /petsc/src/dm/impls/plex/examples/tests/ex3.c /petsc/src/dm/impls/plex/examples/tests/output/ex3_q1_2d_plex_6.out /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexgeometry.c /petsc/src/dm/impls/plex/plexproject.c /petsc/src/dm/impls/plex/plextree.c /petsc/src/dm/impls/swarm/examples/tests/ex1.c dm.c /petsc/src/snes/utils/dmplexsnes.c /petsc/src/ts/utils/dmplexts.c
034e9169	09-Mar-2018	Karl Rupp <me@karlrupp.net>	Merge branch 'pr874/mapdes/pcmg-inject/master' * pr874/mapdes/pcmg-inject/master: This hooks everything up so that if the DM provides an injection we remember it in PCMG. * Add DMHasCreateInjection Merge branch 'pr874/mapdes/pcmg-inject/master' * pr874/mapdes/pcmg-inject/master: This hooks everything up so that if the DM provides an injection we remember it in PCMG. * Add DMHasCreateInjection: Will be needed in PCMG. * FAS: guard DMCreateInjection with DMHasCreateInjection * PCMG: Use injection if the DM provides it The mass-lumped scaling of the restriction is complete nonsense for most discretisations. If the DM provides an injection, use it. This injection is now used by DMRestrictHook_SNESVecSol for transferring the current state to the coarse grid. show more ... /petsc/.gitignore /petsc/.travis.yml /petsc/include/petsc/private/dmimpl.h /petsc/include/petsc/private/kernels/petscaxpy.h /petsc/include/petsc/private/pcmgimpl.h /petsc/include/petscdm.h /petsc/include/petscpc.h /petsc/lib/petsc/bin/maint/buildtest /petsc/lib/petsc/bin/maint/gcov.py /petsc/lib/petsc/bin/maint/runhtml.py /petsc/lib/petsc/conf/rules /petsc/lib/petsc/conf/test /petsc/makefile /petsc/src/dm/impls/da/dacreate.c /petsc/src/dm/impls/forest/p4est/pforest.c /petsc/src/dm/impls/plex/plexcreate.c /petsc/src/dm/impls/shell/dmshell.c dm.c /petsc/src/docs/tao_tex/manual/cover.tex /petsc/src/ksp/ksp/examples/tutorials/ex27.c /petsc/src/ksp/ksp/examples/tutorials/output/ex27_2.out /petsc/src/ksp/pc/impls/mg/mg.c /petsc/src/ksp/pc/impls/mg/mgfunc.c /petsc/src/snes/examples/tutorials/output/ex12_tri_bddc_parmetis.out /petsc/src/snes/examples/tutorials/output/ex16_1.out /petsc/src/snes/examples/tutorials/output/ex16_2.out /petsc/src/snes/examples/tutorials/output/ex48_3.out /petsc/src/snes/examples/tutorials/output/ex48_4.out /petsc/src/snes/impls/fas/fas.c /petsc/src/snes/impls/vi/rs/virs.c /petsc/src/sys/classes/viewer/impls/draw/ftn-custom/zdrawvf.c /petsc/src/sys/f90-mod/petscviewer.h /petsc/src/sys/fileio/sysio.c /petsc/src/tao/matrix/lmvmmat.c /petsc/src/tao/matrix/lmvmmat.h /petsc/src/tao/unconstrained/examples/tutorials/makefile /petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_1.out /petsc/src/tao/unconstrained/examples/tutorials/output/rosenbrock2_1.out /petsc/src/tao/unconstrained/examples/tutorials/rosenbrock2.c /petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
713d6c57	07-Mar-2018	Karl Rupp <me@karlrupp.net>	Merge branch 'pr838/haplav/haplav/feature-petscpartitionermatpartitioning-rb/master' * pr838/haplav/haplav/feature-petscpartitionermatpartitioning-rb/master: Implemented wrapper of MatPartitioning i Merge branch 'pr838/haplav/haplav/feature-petscpartitionermatpartitioning-rb/master' * pr838/haplav/haplav/feature-petscpartitionermatpartitioning-rb/master: Implemented wrapper of MatPartitioning into PetscPartitioner. show more ... /petsc/config/BuildSystem/config/compilerOptions.py /petsc/include/petsc/private/tsimpl.h /petsc/include/petscdmplex.h /petsc/include/petscis.h /petsc/include/petscmat.h /petsc/include/petscts.h /petsc/lib/petsc/bin/maint/buildtest /petsc/src/dm/impls/plex/examples/tests/ex24.c /petsc/src/dm/impls/plex/examples/tests/makefile /petsc/src/dm/impls/plex/examples/tests/output/ex24_0.out /petsc/src/dm/impls/plex/examples/tests/output/ex24_1.out /petsc/src/dm/impls/plex/examples/tests/output/ex24_3.out /petsc/src/dm/impls/plex/examples/tests/output/ex24_4.out /petsc/src/dm/impls/plex/makefile /petsc/src/dm/impls/plex/petscpartmatpart.c /petsc/src/dm/impls/plex/plexpartition.c dmregall.c /petsc/src/docs/tex/manual/part2.tex /petsc/src/mat/impls/adj/mpi/mpiadj.c /petsc/src/mat/interface/dlregismat.c /petsc/src/mat/partition/impls/chaco/chaco.c /petsc/src/mat/partition/impls/scotch/scotch.c /petsc/src/mat/partition/partition.c /petsc/src/snes/examples/tutorials/ex12.c /petsc/src/snes/examples/tutorials/ex62.c /petsc/src/snes/examples/tutorials/ex77.c /petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_conformal_parallel_parmetis.out /petsc/src/snes/examples/tutorials/output/ex12_p4est_exact_q2_nonconformal_parallel_parmetis.out /petsc/src/snes/examples/tutorials/output/ex12_p4est_test_q2_conformal_parallel_parmetis.out /petsc/src/snes/examples/tutorials/output/ex12_p4est_test_q2_nonconformal_parallel_parmetis.out /petsc/src/snes/examples/tutorials/output/ex12_tri_bddc_parmetis.out /petsc/src/snes/examples/tutorials/output/ex62_20_parmetis.out /petsc/src/ts/examples/tutorials/ex16adj.c /petsc/src/ts/examples/tutorials/ex16opt_p.c /petsc/src/ts/examples/tutorials/ex20adj.c /petsc/src/ts/examples/tutorials/ex20fwd.c /petsc/src/ts/examples/tutorials/ex20opt_p.c /petsc/src/ts/examples/tutorials/hybrid/ex1adj.c /petsc/src/ts/examples/tutorials/hybrid/ex1fwd.c /petsc/src/ts/examples/tutorials/power_grid/ex3opt.c /petsc/src/ts/examples/tutorials/power_grid/ex3sa.c /petsc/src/ts/examples/tutorials/power_grid/ex9adj.c /petsc/src/ts/examples/tutorials/power_grid/ex9opt.c /petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busopt.c /petsc/src/ts/interface/makefile /petsc/src/ts/interface/ts.c /petsc/src/ts/interface/tssen.c /petsc/src/vec/is/is/utils/iscomp.c /petsc/src/vec/is/utils/vsectionis.c /petsc/src/vec/vec/impls/mpi/pvec2.c /petsc/src/vec/vec/impls/seq/dvec2.c
4a7a4c06	06-Mar-2018	Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk>	Make DMHasCreateInjection overrideable by subclasses Default to PETSC_FALSE. It's only provided by Plex, Pforest, and DA in (if using DMDA_Q1 as interpolation type). /petsc/include/petsc/private/dmimpl.h /petsc/include/petsc/private/pcmgimpl.h /petsc/include/petscpc.h /petsc/src/dm/impls/da/dacreate.c /petsc/src/dm/impls/forest/p4est/pforest.c /petsc/src/dm/impls/plex/plexcreate.c dm.c /petsc/src/ksp/pc/impls/mg/mg.c /petsc/src/ksp/pc/impls/mg/mgfunc.c /petsc/src/snes/impls/fas/fas.c /petsc/src/snes/impls/vi/rs/virs.c
32814795	06-Mar-2018	Karl Rupp <me@karlrupp.net>	Merge branch 'denera/fix-tablevels-for-views' [PR #869] * denera/fix-tablevels-for-views: Instead of manual push-pop tab operations, views now inherit tablevels automatically. This makes views consi Merge branch 'denera/fix-tablevels-for-views' [PR #869] * denera/fix-tablevels-for-views: Instead of manual push-pop tab operations, views now inherit tablevels automatically. This makes views consistent with default convergence monitors. show more ... /petsc/include/petsc/private/tsimpl.h /petsc/include/petscmat.h /petsc/include/petscts.h /petsc/src/dm/impls/da/gr2.c /petsc/src/dm/impls/plex/plex.c dm.c /petsc/src/ksp/ksp/examples/tutorials/ex10.c /petsc/src/ksp/ksp/examples/tutorials/ex2.c /petsc/src/ksp/ksp/examples/tutorials/output/ex2_sell_mumps.out /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/ksp/interface/iterativ.c /petsc/src/ksp/pc/examples/tests/ex3.c /petsc/src/ksp/pc/impls/gamg/gamg.c /petsc/src/ksp/pc/interface/precon.c /petsc/src/mat/impls/aij/mpi/mumps/mumps.c /petsc/src/mat/impls/aij/seq/superlu/superlu.c /petsc/src/mat/impls/dense/mpi/mpidense.c /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/impls/sell/seq/sell.c /petsc/src/mat/impls/sell/seq/sell.h /petsc/src/mat/impls/shell/shell.c /petsc/src/mat/interface/matrix.c /petsc/src/snes/examples/tutorials/ex19.c /petsc/src/snes/examples/tutorials/ex5.c /petsc/src/snes/interface/snes.c /petsc/src/snes/linesearch/interface/linesearch.c /petsc/src/snes/utils/dmsnes.c /petsc/src/tao/bound/examples/tutorials/output/plate2_1.out /petsc/src/tao/bound/examples/tutorials/output/plate2_2.out /petsc/src/tao/bound/examples/tutorials/output/plate2_3.out /petsc/src/tao/bound/examples/tutorials/output/plate2_4.out /petsc/src/tao/bound/examples/tutorials/output/plate2_5.out /petsc/src/tao/bound/examples/tutorials/output/plate2_6.out /petsc/src/tao/bound/examples/tutorials/output/plate2_7.out /petsc/src/tao/bound/impls/blmvm/blmvm.c /petsc/src/tao/bound/impls/bqpip/bqpip.c /petsc/src/tao/bound/impls/gpcg/gpcg.c /petsc/src/tao/bound/impls/tron/tron.c /petsc/src/tao/complementarity/examples/tutorials/output/minsurf1_1.out /petsc/src/tao/complementarity/examples/tutorials/output/minsurf1_2.out /petsc/src/tao/complementarity/impls/asls/asfls.c /petsc/src/tao/complementarity/impls/asls/asils.c /petsc/src/tao/complementarity/impls/ssls/ssfls.c /petsc/src/tao/complementarity/impls/ssls/ssils.c /petsc/src/tao/constrained/impls/ipm/ipm.c /petsc/src/tao/interface/taosolver.c /petsc/src/tao/leastsquares/impls/pounders/pounders.c /petsc/src/tao/linesearch/interface/taolinesearch.c /petsc/src/tao/matrix/lmvmmat.c /petsc/src/tao/pde_constrained/impls/lcl/lcl.c /petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_1.out /petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_2.out /petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_3.out /petsc/src/tao/unconstrained/impls/cg/taocg.c /petsc/src/tao/unconstrained/impls/lmvm/lmvm.c /petsc/src/tao/unconstrained/impls/nls/nls.c /petsc/src/tao/unconstrained/impls/ntl/ntl.c /petsc/src/tao/unconstrained/impls/ntr/ntr.c /petsc/src/tao/unconstrained/impls/owlqn/owlqn.c /petsc/src/ts/examples/tutorials/ex20adj.c /petsc/src/ts/examples/tutorials/ex20fwd.c /petsc/src/ts/examples/tutorials/hybrid/ex1fwd.c /petsc/src/ts/examples/tutorials/output/ex16opt_ic_1.out /petsc/src/ts/examples/tutorials/output/ex16opt_p_1.out /petsc/src/ts/examples/tutorials/output/ex20fwd_1.out /petsc/src/ts/examples/tutorials/output/ex20fwd_2.out /petsc/src/ts/examples/tutorials/output/ex20opt_ic_1.out /petsc/src/ts/examples/tutorials/output/ex20opt_p_1.out /petsc/src/ts/examples/tutorials/power_grid/ex3opt.c /petsc/src/ts/examples/tutorials/power_grid/ex3sa.c /petsc/src/ts/examples/tutorials/power_grid/makefile /petsc/src/ts/examples/tutorials/power_grid/output/ex3sa_1.out /petsc/src/ts/examples/tutorials/power_grid/output/ex3sa_2.out /petsc/src/ts/impls/implicit/theta/theta.c /petsc/src/ts/interface/ts.c /petsc/src/ts/interface/tsfwdsen.c /petsc/src/vec/vec/interface/rvector.c /petsc/src/vec/vec/utils/vecglvis.c
72de04e6	05-Mar-2018	Jed Brown <jed@jedbrown.org>	Merge branch 'bourdin/dmplex-exodusiiView' of bitbucket:bourdin/petsc-dmplex-exodusiiview [PR #863] * 'bourdin/dmplex-exodusiiView' of bitbucket:bourdin/petsc-dmplex-exodusiiview: BuildSystem: bug Merge branch 'bourdin/dmplex-exodusiiView' of bitbucket:bourdin/petsc-dmplex-exodusiiview [PR #863] * 'bourdin/dmplex-exodusiiView' of bitbucket:bourdin/petsc-dmplex-exodusiiview: BuildSystem: bug fixes in pnetcdf dm: changed DMGetLabelIdIS to return an empty IS instead of NULL if the label is empty BuildSystem: upgraded exodusII, removed fortran library dmplex: bug fixes in exodus viewer, write side sets show more ... /petsc/config/BuildSystem/config/packages/exodusii.py /petsc/config/BuildSystem/config/packages/pnetcdf.py /petsc/config/install.py /petsc/src/dm/impls/plex/plexexodusii.c dm.c /petsc/src/mat/examples/tests/ex72.c /petsc/src/sys/utils/pdisplay.c /petsc/src/vec/vec/impls/seq/dvec2.c
a126751e	03-Mar-2018	Barry Smith <bsmith@mcs.anl.gov>	Change PetscStrncat() to PetscStrlcat() to match BSD API where l represents total length Update many uses of PetscStrcpy() and PetscStrcat() to the safer PetscStrncpy() and PetscStrlcat() Commit-ty Change PetscStrncat() to PetscStrlcat() to match BSD API where l represents total length Update many uses of PetscStrcpy() and PetscStrcat() to the safer PetscStrncpy() and PetscStrlcat() Commit-type: style-fix, feature Thanks-to: Jed Brown show more ... /petsc/bitbucket-pipelines.yml /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/libmesh.py 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a7058e45	02-Mar-2018	Lawrence Mitchell <lawrence.mitchell@imperial.ac.uk>	Add DMHasCreateInjection Will be needed in PCMG. /petsc/bitbucket-pipelines.yml /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/libmesh.py /petsc/config/BuildSystem/config/packages/mkl_sparse.py /petsc/config/BuildSystem/config/packages/moose.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/BuildSystem/config/packages/sowing.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/BuildSystem/script.py /petsc/config/PETSc/Configure.py 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f94b4a02	01-Mar-2018	Blaise Bourdin <bourdin@lsu.edu>	DM: make subDM inherit the GlobaltoNatural flag and SF /petsc/bitbucket-pipelines.yml /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/libmesh.py /petsc/config/BuildSystem/config/packages/mkl_sparse.py /petsc/config/BuildSystem/config/packages/moose.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/BuildSystem/config/packages/sowing.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/BuildSystem/script.py /petsc/config/PETSc/Configure.py 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55784310	01-Mar-2018	Alp Dener <adener@mcs.anl.gov>	Replaced leftover AddTab call with SetTab dm.c /petsc/src/mat/impls/shell/shell.c /petsc/src/tao/bound/examples/tutorials/output/plate2_1.out /petsc/src/tao/bound/examples/tutorials/output/plate2_2.out /petsc/src/tao/bound/examples/tutorials/output/plate2_3.out /petsc/src/tao/bound/examples/tutorials/output/plate2_4.out /petsc/src/tao/bound/examples/tutorials/output/plate2_5.out /petsc/src/tao/bound/examples/tutorials/output/plate2_6.out /petsc/src/tao/bound/examples/tutorials/output/plate2_7.out /petsc/src/tao/complementarity/examples/tutorials/output/minsurf1_1.out /petsc/src/tao/complementarity/examples/tutorials/output/minsurf1_2.out /petsc/src/tao/interface/taosolver.c /petsc/src/tao/leastsquares/impls/pounders/pounders.c /petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_1.out /petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_2.out /petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_3.out /petsc/src/ts/examples/tutorials/output/ex20opt_ic_1.out /petsc/src/ts/examples/tutorials/output/ex20opt_p_1.out
63b15415	27-Feb-2018	Alp Dener <adener@mcs.anl.gov>	Wrapping up for a pull request dm.c /petsc/src/ksp/ksp/interface/itcreate.c /petsc/src/ksp/ksp/interface/iterativ.c /petsc/src/ksp/pc/interface/precon.c /petsc/src/snes/interface/snes.c /petsc/src/snes/linesearch/interface/linesearch.c /petsc/src/tao/bound/impls/blmvm/blmvm.c /petsc/src/tao/bound/impls/bqpip/bqpip.c /petsc/src/tao/bound/impls/gpcg/gpcg.c /petsc/src/tao/bound/impls/tron/tron.c /petsc/src/tao/complementarity/impls/asls/asfls.c /petsc/src/tao/complementarity/impls/asls/asils.c /petsc/src/tao/complementarity/impls/ssls/ssfls.c /petsc/src/tao/complementarity/impls/ssls/ssils.c /petsc/src/tao/constrained/impls/ipm/ipm.c /petsc/src/tao/interface/taosolver.c /petsc/src/tao/leastsquares/impls/pounders/pounders.c /petsc/src/tao/linesearch/interface/taolinesearch.c /petsc/src/tao/matrix/lmvmmat.c /petsc/src/tao/pde_constrained/impls/lcl/lcl.c /petsc/src/tao/unconstrained/impls/cg/taocg.c /petsc/src/tao/unconstrained/impls/lmvm/lmvm.c /petsc/src/tao/unconstrained/impls/nls/nls.c /petsc/src/tao/unconstrained/impls/ntl/ntl.c /petsc/src/tao/unconstrained/impls/ntr/ntr.c /petsc/src/tao/unconstrained/impls/owlqn/owlqn.c /petsc/src/ts/interface/ts.c
19b5c101	27-Feb-2018	Alp Dener <adener@mcs.anl.gov>	All views changed to inherit tab levels from associated objects /petsc/bitbucket-pipelines.yml /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/libmesh.py /petsc/config/BuildSystem/config/packages/mkl_sparse.py /petsc/config/BuildSystem/config/packages/moose.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/BuildSystem/config/packages/sowing.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/BuildSystem/script.py /petsc/config/PETSc/Configure.py 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dab2e251	23-Feb-2018	Blaise Bourdin <bourdin@lsu.edu>	dm: changed DMGetLabelIdIS to return an empty IS instead of NULL if the label is empty /petsc/bin/maint/buildtest /petsc/bin/maint/confignightly/cg /petsc/bin/maint/confignightly/cg2 /petsc/bin/maint/confignightly/cg3 /petsc/bin/maint/confignightly/cg4 /petsc/bin/maint/confignightly/churn /petsc/bin/maint/confignightly/churn2 /petsc/bin/maint/confignightly/churn3 /petsc/bin/maint/confignightly/crank /petsc/bin/maint/confignightly/crank2 /petsc/bin/maint/confignightly/crank3 /petsc/bin/maint/confignightly/crush /petsc/bin/maint/confignightly/crush2 /petsc/bin/maint/confignightly/crush3 /petsc/bin/maint/confignightly/default /petsc/bin/maint/confignightly/el6 /petsc/bin/maint/confignightly/el6-2 /petsc/bin/maint/confignightly/el6-3 /petsc/bin/maint/confignightly/el6-4 /petsc/bin/maint/confignightly/es /petsc/bin/maint/confignightly/es2 /petsc/bin/maint/confignightly/es3 /petsc/bin/maint/confignightly/es4 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/petsc/src/tao/bound/examples/tutorials/jbearing2.c /petsc/src/tao/examples/tutorials/ex3.c /petsc/src/tao/leastsquares/examples/tutorials/chwirut1f.F90 /petsc/src/tao/matrix/adamat.c /petsc/src/tao/matrix/submatfree.c /petsc/src/tao/unconstrained/examples/tutorials/burgers_spectral.c /petsc/src/tao/unconstrained/examples/tutorials/output/burgers_spectral.out /petsc/src/tao/unconstrained/examples/tutorials/output/burgers_spectral_2.out /petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1f.F90 /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex2.c /petsc/src/ts/examples/tutorials/advection-diffusion-reaction/shashi.F90 /petsc/src/ts/examples/tutorials/eimex/allen_cahn.c /petsc/src/ts/examples/tutorials/eimex/output/allen_cahn.out /petsc/src/ts/examples/tutorials/ex11.c /petsc/src/ts/examples/tutorials/ex16adj.c /petsc/src/ts/examples/tutorials/ex16opt_ic.c /petsc/src/ts/examples/tutorials/ex31.c /petsc/src/ts/examples/tutorials/ex45.c 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/petsc/src/vec/vec/examples/tests/ex11.c /petsc/src/vec/vec/examples/tests/ex29.c /petsc/src/vec/vec/examples/tutorials/ex14f.F90 /petsc/src/vec/vec/examples/tutorials/ex9f.F90 /petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu /petsc/src/vec/vec/impls/mpi/pbvec.c /petsc/src/vec/vec/impls/seq/bvec2.c /petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c /petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu /petsc/src/vec/vec/impls/seq/seqcusp/veccusp2.cu
9042c34a	15-Feb-2018	Toby Isaac <tisaac@cc.gatech.edu>	PetscFE: remove nonaffine as separate implementation Dual space application and integration will be able to handle affine and general geometry independent of the fe used /petsc/include/petsc/private/petscfeimpl.h /petsc/include/petscfe.h /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/impls/plex/examples/tests/ex3.c /petsc/src/dm/impls/plex/plexproject.c dmregall.c
f19dbd58	15-Feb-2018	Toby Isaac <tisaac@cc.gatech.edu>	Added DMGetCoordinateField() /petsc/include/petsc/private/dmimpl.h /petsc/include/petscdm.h /petsc/include/petscdmfield.h /petsc/include/petscfe.h /petsc/src/dm/dt/interface/dtfe.c /petsc/src/dm/field/examples/makefile /petsc/src/dm/field/examples/tutorials/ex1.c /petsc/src/dm/field/examples/tutorials/makefile /petsc/src/dm/field/examples/tutorials/output/ex1_da.out /petsc/src/dm/field/examples/tutorials/output/ex1_da_1.out /petsc/src/dm/field/examples/tutorials/output/ex1_da_2.out /petsc/src/dm/field/examples/tutorials/output/ex1_da_3.out /petsc/src/dm/field/examples/tutorials/output/ex1_ds.out /petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_0.out /petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_1.out /petsc/src/dm/field/examples/tutorials/output/ex1_ds_simplex_2.out /petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_2_0.out /petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_2_1.out /petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_2_2.out /petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_0.out /petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_1.out /petsc/src/dm/field/examples/tutorials/output/ex1_ds_tensor_3_2.out /petsc/src/dm/field/impls/da/dmfieldda.c /petsc/src/dm/field/impls/da/makefile /petsc/src/dm/field/impls/ds/dmfieldds.c /petsc/src/dm/field/impls/ds/makefile /petsc/src/dm/field/impls/makefile /petsc/src/dm/field/impls/shell/dmfieldshell.c /petsc/src/dm/field/impls/shell/makefile /petsc/src/dm/field/interface/dmfield.c /petsc/src/dm/field/makefile /petsc/src/dm/impls/da/dacorn.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexcreate.c dm.c
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