Updated style to obey 'Do not put a blank line immediately after PetscFunctionBegin;'

Hg-commit: 5408b9ce2402ad624305b7a7a323ab3ae5e0c3f1

Reformatting: 'No space after a '(' or before a ')''

Hg-commit: 797341a7bfba18bb97e6da668b36bad2e5977356

if, for, while, switch now have consistently a space prior to the opening parenthesis.

Hg-commit: cf69a5905ee4efb938b2bdd2762f87854175a6c5

Replaced '#ifdef' and '#ifndef' with '#if defined()' and '#if !defined()'.

Hg-commit: b3ebae8b626a88c2ac067fd7c3f04f229b43f305

Fixed all violations of 'In function declaration the open bracket { should be on the next line, not on the same line as the function name and arguments'

Hg-commit: dcf94e40c4cd63bca3cd717b13d3be0d4e

Fixed all violations of 'In function declaration the open bracket { should be on the next line, not on the same line as the function name and arguments'

Hg-commit: dcf94e40c4cd63bca3cd717b13d3be0d4ebc15eb

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Carefully replaced more '){' by ') {', added checker script

Hg-commit: a0037010be00b56a68354d942365c8f8df63198a

Style improvements: braces around 'else', partial '){' -> ') {'

Hg-commit: adc31fe870178bcba56a29e10981c8f8716a006a

Eliminated all C++-style comment sequences '//'. Exception: src/dm/impls/mesh/* with all the Sieve stuff

Hg-commit: 2021722ddbb234169c3fed24a68346839472dd36

Carefully removed \t from src/sys/*

Hg-commit: 910eecdb2d9101d15fb5ee24738d9e5eca423f9a

removed silly abreviations

Hg-commit: 0641f9ef776cf11cc3336b494981da756bf9d14f

silly code formatting problems; some people still need to read the style guide

Hg-commit: 7a98cb06baf90914d565ea8801b6900bdc5a04c1

change PetscFListAdd() and PetscFListFind() arguments list to match PetscOpFListAdd/Find() args

Hg-commit: 07f9e01e040feeb4162253a60ca63556436f4135

some fixes to allow building docs
added manual page for SNESFunction as function pointer "typedef" for documentation

Hg-commit: 500030c17aeb246f96d2a50eef27de48702713c1

Update header file relative paths from src/sys/classes/

Hg-commit: e132f54d7dd57ff487f4fef2691fc7e4f4a92dd6

Add MPIU_BOOL and MPIU_ENUM to control clang-3.2 warnings when using MPI_INT directly

Hg-commit: 659ebb827654e17cd01d6fb5cf1a54155f4e77a7

Fix the most dangerous MPI type mismatches, still many with PetscBool/PetscEnum using MPI_INT

Hg-commit: 146d1df88e306d69e6ce797932b1c3352fd7851c

removed adic stuff

Hg-commit: 99933b6f66a48c78b00a3952edfaf6191df65340

removed trailing spaces from all files

Hg-commit: 1cfa55059afe46c5145e0e830cd797b97216abfb

DMDA 1d uses ofill to reduce the number of colors needed to compute Jacobian

Hg-commit: 9f0ebbc75c4af8a1c0218d034217009466841c99

fix to axis plotting for small values
flag to turn off reaction terms

Hg-commit: 105d03d19714ac021991d19efeba132ab17cd693

more fixes to axis

Hg-commit: a830ec8287c0819dbd5de5bcb82a5d8d633d3f3f

simplify formating of axis numbers in plots to avoid uglyness in many cases

Hg-commit: 2a458b57f00ba458f67eff531225049a559134d9

improve axis numbering for small values
improve accessing ray for DMDA Vector

Hg-commit: 160100bb0a5cf1fd7d317f4841a2e1bbea872ddb

double buffer x windows by default
error if dmda 2d with mirror and box stencil since not implemented
2d version of 1d void diffusion reaction code

Hg-commit: 153499f04454051a166b43c4c5c58e837bbc1396

better zero detector for axis plotting

Hg-commit: e1e6dc5ca9e2c642838356db41ccf5ef2e4e030a