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1d27aa2204-Dec-2023 Barry Smith <bsmith@mcs.anl.gov>

Update references in the manual pages to use Sphinx citation processing


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/packages/mkl_pardiso.py
/petsc/config/BuildSystem/config/packages/netlib-lapack.py
/petsc/config/BuildSystem/config/packages/slepc.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/doc/build_classic_docs.py
/petsc/doc/build_man_impls_links.py
/petsc/doc/build_man_index.py
/petsc/doc/changes/35.rst
/petsc/doc/changes/36.rst
/petsc/doc/conf.py
/petsc/doc/developers/documentation.rst
/petsc/doc/developers/style.rst
/petsc/doc/install/download.rst
/petsc/doc/manual/ksp.rst
/petsc/doc/manual/mat.rst
/petsc/doc/manual/tao.rst
/petsc/doc/overview/linear_solve_table.rst
/petsc/doc/petsc.bib
/petsc/include/petsc/private/hashmap.h
/petsc/include/petsc/private/hashset.h
/petsc/include/petscdmforest.h
/petsc/include/petscdmtypes.h
/petsc/include/petscdualspace.h
/petsc/include/petscerror.h
/petsc/include/petsclog.h
/petsc/include/petscoptions.h
/petsc/include/petscpctypes.h
/petsc/include/petscsys.h
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/check-ci-settings.sh
/petsc/lib/petsc/bin/maint/check-each-commit.sh
/petsc/lib/petsc/bin/maint/check-merge-branch.sh
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/classes/_linter.py
/petsc/lib/petsc/bin/maint/rebuildtar
/petsc/share/petsc/matlab/generatePetscTestFiles.m
/petsc/src/binding/petsc4py/DESCRIPTION.rst
/petsc/src/binding/petsc4py/docs/source/citing.rst
/petsc/src/binding/petsc4py/docs/source/conf.py
/petsc/src/binding/petsc4py/docs/source/overview.rst
/petsc/src/binding/petsc4py/src/petsc4py/__init__.py
/petsc/src/dm/dt/fv/interface/fv.c
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtprob.c
/petsc/src/dm/impls/da/f90-custom/zda1f90.c
/petsc/src/dm/impls/da/fdda.c
/petsc/src/dm/impls/da/ftn-custom/zdaf.c
/petsc/src/dm/impls/moab/dmmbio.cxx
/petsc/src/dm/impls/moab/dmmbmat.cxx
/petsc/src/dm/impls/moab/dmmbutil.cxx
/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfluent.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexply.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/stag/stagutils.c
/petsc/src/dm/interface/dm.c
/petsc/src/ksp/ksp/guess/impls/fischer/fischer.c
/petsc/src/ksp/ksp/guess/impls/pod/pod.c
/petsc/src/ksp/ksp/impls/bcgs/bcgs.c
/petsc/src/ksp/ksp/impls/bcgs/fbcgs/fbcgs.c
/petsc/src/ksp/ksp/impls/bcgs/fbcgsr/fbcgsr.c
/petsc/src/ksp/ksp/impls/bcgs/pipebcgs/pipebcgs.c
/petsc/src/ksp/ksp/impls/bcgs/qmrcgs/qmrcgs.c
/petsc/src/ksp/ksp/impls/bcgsl/bcgsl.c
/petsc/src/ksp/ksp/impls/cg/cg.c
/petsc/src/ksp/ksp/impls/cg/cgls.c
/petsc/src/ksp/ksp/impls/cg/cgne/cgne.c
/petsc/src/ksp/ksp/impls/cg/cgtype.c
/petsc/src/ksp/ksp/impls/cg/gltr/gltr.c
/petsc/src/ksp/ksp/impls/cg/groppcg/groppcg.c
/petsc/src/ksp/ksp/impls/cg/nash/nash.c
/petsc/src/ksp/ksp/impls/cg/pipecg/pipecg.c
/petsc/src/ksp/ksp/impls/cg/pipecg2/pipecg2.c
/petsc/src/ksp/ksp/impls/cg/pipecgrr/pipecgrr.c
/petsc/src/ksp/ksp/impls/cg/pipelcg/pipelcg.c
/petsc/src/ksp/ksp/impls/cg/pipeprcg/pipeprcg.c
/petsc/src/ksp/ksp/impls/cg/stcg/stcg.c
/petsc/src/ksp/ksp/impls/cgs/cgs.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/cr/cr.c
/petsc/src/ksp/ksp/impls/cr/pipecr/pipecr.c
/petsc/src/ksp/ksp/impls/fcg/fcg.c
/petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c
/petsc/src/ksp/ksp/impls/fetidp/fetidp.c
/petsc/src/ksp/ksp/impls/gcr/gcr.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c
/petsc/src/ksp/ksp/impls/gmres/borthog.c
/petsc/src/ksp/ksp/impls/gmres/borthog2.c
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/fgmres.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/ftn-custom/zmodpcff.c
/petsc/src/ksp/ksp/impls/gmres/fgmres/modpcf.c
/petsc/src/ksp/ksp/impls/gmres/gmpre.c
/petsc/src/ksp/ksp/impls/gmres/gmres.c
/petsc/src/ksp/ksp/impls/gmres/gmres2.c
/petsc/src/ksp/ksp/impls/gmres/lgmres/lgmres.c
/petsc/src/ksp/ksp/impls/gmres/pgmres/pgmres.c
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/impls/hpddm/hpddm.cxx
/petsc/src/ksp/ksp/impls/ibcgs/ibcgs.c
/petsc/src/ksp/ksp/impls/lcd/lcd.c
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/impls/minres/minres.c
/petsc/src/ksp/ksp/impls/preonly/preonly.c
/petsc/src/ksp/ksp/impls/qcg/qcg.c
/petsc/src/ksp/ksp/impls/rich/rich.c
/petsc/src/ksp/ksp/impls/rich/richscale.c
/petsc/src/ksp/ksp/impls/symmlq/symmlq.c
/petsc/src/ksp/ksp/impls/tcqmr/tcqmr.c
/petsc/src/ksp/ksp/impls/tfqmr/tfqmr.c
/petsc/src/ksp/ksp/impls/tsirm/tsirm.c
/petsc/src/ksp/ksp/interface/dmksp.c
/petsc/src/ksp/ksp/interface/eige.c
/petsc/src/ksp/ksp/interface/ftn-custom/zitfuncf.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/tutorials/ex14f.F90
/petsc/src/ksp/ksp/utils/dmproject.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/amgx/amgx.cxx
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcscalingbasic.c
/petsc/src/ksp/pc/impls/bddc/bddcschurs.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/bjacobi/bjkokkos/bjkokkos.kokkos.cxx
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/impls/cp/cp.c
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/ksp/pc/impls/eisens/eisen.c
/petsc/src/ksp/pc/impls/factor/cholesky/cholesky.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/factor/icc/icc.c
/petsc/src/ksp/pc/impls/factor/ilu/ilu.c
/petsc/src/ksp/pc/impls/factor/lu/lu.c
/petsc/src/ksp/pc/impls/factor/qr/qr.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/galerkin/galerkin.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/classical.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gasm/gasm.c
/petsc/src/ksp/pc/impls/h2opus/pch2opus.c
/petsc/src/ksp/pc/impls/hmg/hmg.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/ksp/pc/impls/hypre/hypre.c
/petsc/src/ksp/pc/impls/is/nn/nn.c
/petsc/src/ksp/pc/impls/is/pcis.c
/petsc/src/ksp/pc/impls/jacobi/jacobi.c
/petsc/src/ksp/pc/impls/kaczmarz/kaczmarz.c
/petsc/src/ksp/pc/impls/ksp/pcksp.c
/petsc/src/ksp/pc/impls/lmvm/lmvmpc.c
/petsc/src/ksp/pc/impls/lsc/lsc.c
/petsc/src/ksp/pc/impls/mat/pcmat.c
/petsc/src/ksp/pc/impls/mg/mg.c
/petsc/src/ksp/pc/impls/mg/mgadapt.c
/petsc/src/ksp/pc/impls/mg/mgfunc.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/impls/none/none.c
/petsc/src/ksp/pc/impls/parms/parms.c
/petsc/src/ksp/pc/impls/patch/pcpatch.c
/petsc/src/ksp/pc/impls/pbjacobi/pbjacobi.c
/petsc/src/ksp/pc/impls/python/pythonpc.c
/petsc/src/ksp/pc/impls/redistribute/redistribute.c
/petsc/src/ksp/pc/impls/redundant/redundant.c
/petsc/src/ksp/pc/impls/rowscalingviennacl/rowscalingviennacl.cxx
/petsc/src/ksp/pc/impls/saviennacl/saviennacl.cxx
/petsc/src/ksp/pc/impls/shell/shellpc.c
/petsc/src/ksp/pc/impls/sor/sor.c
/petsc/src/ksp/pc/impls/spai/ispai.c
/petsc/src/ksp/pc/impls/svd/svd.c
/petsc/src/ksp/pc/impls/telescope/telescope.c
/petsc/src/ksp/pc/impls/tfs/tfs.c
/petsc/src/ksp/pc/impls/vpbjacobi/vpbjacobi.c
/petsc/src/ksp/pc/impls/wb/wb.c
/petsc/src/ksp/pc/interface/pcregis.c
/petsc/src/ksp/pc/interface/pcset.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/color/impls/greedy/greedy.c
/petsc/src/mat/color/impls/jp/jp.c
/petsc/src/mat/color/impls/minpack/color.c
/petsc/src/mat/f90-mod/petscmat.h90
/petsc/src/mat/impls/aij/mpi/mkl_cpardiso/mkl_cpardiso.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/mpi/strumpack/strumpack.c
/petsc/src/mat/impls/aij/seq/klu/klu.c
/petsc/src/mat/impls/aij/seq/mkl_pardiso/mkl_pardiso.c
/petsc/src/mat/impls/aij/seq/spqr/aijspqr.c
/petsc/src/mat/impls/aij/seq/superlu/superlu.c
/petsc/src/mat/impls/aij/seq/umfpack/umfpack.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/composite/mcomposite.c
/petsc/src/mat/impls/h2opus/cuda/math2opus.cu
/petsc/src/mat/impls/mffd/mffddef.c
/petsc/src/mat/impls/mffd/wp.c
/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/interface/ftn-custom/zmatrixf.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/partition/ftn-custom/zpartitionf.c
/petsc/src/mat/partition/impls/chaco/chaco.c
/petsc/src/mat/partition/impls/hierarchical/hierarchical.c
/petsc/src/mat/partition/impls/party/party.c
/petsc/src/mat/partition/impls/scotch/scotch.c
/petsc/src/mat/tests/ex152.c
/petsc/src/mat/tests/ex170.c
/petsc/src/mat/tests/ex219f.F90
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/petsc/src/mat/tests/output/ex262f_1.out
/petsc/src/mat/utils/matstash.c
/petsc/src/snes/impls/composite/snescomposite.c
/petsc/src/snes/impls/fas/fas.c
/petsc/src/snes/impls/fas/fasfunc.c
/petsc/src/snes/impls/fas/fasgalerkin.c
/petsc/src/snes/impls/gs/snesgs.c
/petsc/src/snes/impls/ksponly/ksponly.c
/petsc/src/snes/impls/ls/ls.c
/petsc/src/snes/impls/ms/ms.c
/petsc/src/snes/impls/multiblock/multiblock.c
/petsc/src/snes/impls/nasm/aspin.c
/petsc/src/snes/impls/nasm/nasm.c
/petsc/src/snes/impls/ncg/snesncg.c
/petsc/src/snes/impls/ngmres/anderson.c
/petsc/src/snes/impls/ngmres/snesngmres.c
/petsc/src/snes/impls/ntrdc/ntrdc.c
/petsc/src/snes/impls/patch/snespatch.c
/petsc/src/snes/impls/python/pythonsnes.c
/petsc/src/snes/impls/qn/qn.c
/petsc/src/snes/impls/richardson/snesrichardson.c
/petsc/src/snes/impls/shell/snesshell.c
/petsc/src/snes/impls/tr/tr.c
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/petsc/src/snes/interface/snesob.c
/petsc/src/snes/interface/snespc.c
/petsc/src/snes/interface/snesregi.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/linesearch/impls/basic/linesearchbasic.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/snes/linesearch/impls/nleqerr/linesearchnleqerr.c
/petsc/src/snes/linesearch/impls/shell/linesearchshell.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/linesearch/interface/linesearchregi.c
/petsc/src/snes/mf/snesmfj.c
/petsc/src/snes/tutorials/ex35.c
/petsc/src/snes/tutorials/ex69.c
/petsc/src/snes/utils/convest.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/snes/utils/dmdasnes.c
/petsc/src/snes/utils/dmlocalsnes.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/snes/utils/ftn-custom/zdmdasnesf.c
/petsc/src/sys/classes/draw/utils/bars.c
/petsc/src/sys/classes/draw/utils/hists.c
/petsc/src/sys/error/ftn-custom/zerrf.c
/petsc/src/sys/f90-src/f90_cwrap.c
/petsc/src/sys/ftn-custom/zsys.c
/petsc/src/sys/ftn-custom/zutils.c
plog.c
/petsc/src/sys/memory/ftn-custom/zmtrf.c
/petsc/src/sys/memory/mal.c
/petsc/src/sys/objects/aoptions.c
/petsc/src/sys/objects/device/interface/petscdevice_interface_internal.hpp
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/optionsyaml.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/utils/mathclose.c
/petsc/src/sys/utils/mpits.c
/petsc/src/sys/utils/sortso.c
/petsc/src/tao/complementarity/impls/asls/asfls.c
/petsc/src/tao/complementarity/impls/asls/asils.c
/petsc/src/tao/complementarity/impls/ssls/ssls.h
/petsc/src/tao/complementarity/tutorials/blackscholes.c
/petsc/src/tao/constrained/impls/admm/admm.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/linesearch/impls/armijo/armijo.c
/petsc/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.c
/petsc/src/tao/linesearch/impls/morethuente/morethuente.c
/petsc/src/tao/linesearch/impls/owarmijo/owarmijo.c
/petsc/src/tao/linesearch/impls/unit/unit.c
/petsc/src/tao/linesearch/interface/ftn-custom/ztaolinesearchf.c
/petsc/src/tao/unconstrained/tutorials/output/rosenbrock1_snes_ls_armijo.out
/petsc/src/ts/adapt/impls/dsp/adaptdsp.c
/petsc/src/ts/characteristic/interface/characteristic.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/eimex/eimex.c
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/explicit/ssp/ssp.c
/petsc/src/ts/impls/implicit/alpha/alpha1.c
/petsc/src/ts/impls/implicit/alpha/alpha2.c
/petsc/src/ts/impls/implicit/glle/glle.c
/petsc/src/ts/impls/pseudo/posindep.c
/petsc/src/ts/impls/rosw/rosw.c
/petsc/src/ts/impls/symplectic/basicsymplectic/basicsymplectic.c
/petsc/src/ts/interface/ftn-custom/ztsf.c
/petsc/src/ts/interface/tsmon.c
/petsc/src/ts/tutorials/hybrid/ex1adj.c
/petsc/src/ts/tutorials/hybrid/ex1fwd.c
/petsc/src/ts/utils/dmplexlandau/plexland.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/vecstash.c
cd791dc221-Nov-2023 Barry Smith <bsmith@mcs.anl.gov>

Fix PetscOptionsGetViewer() so it works in a thread-safe way

When PetscOptionsGetViewer() returns, for example, PETSC_VIEWER_STDOUT_SELF the same object is shared
by all threads that call PetscOptio

Fix PetscOptionsGetViewer() so it works in a thread-safe way

When PetscOptionsGetViewer() returns, for example, PETSC_VIEWER_STDOUT_SELF the same object is shared
by all threads that call PetscOptionsGetViewer(). In the previous code PetscObjectReference() and
dereference (via PetscViewerDestroy() where called on the viewer by multiple threads after the viewer
was accessed thus corrupting the object.

This branch introduces a PetscOptionsRestoreViewer() that allows not doing the referencing and dereferencing
on persistant viewers, thus removing the specific race condition above.

Other possible solutions include

Use a lock on each PetscObjectReference/Dereference() just in case they are shared. Could be time consuming so one
could mark each object as either threadshared or independent and only do the locks on threadshared objects. This lowers
the cost but would require more extensive changes to PETSc infrastructure. And I do not know if this shared/not shared model
is what we need in the long run, though it might be.

show more ...


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/packages/X.py
/petsc/config/BuildSystem/config/packages/kokkos-kernels.py
/petsc/config/BuildSystem/config/packages/kokkos.py
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/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/examples/arch-alcf-polaris.py
/petsc/doc/build_classic_docs.py
/petsc/doc/changes/dev.rst
/petsc/doc/developers/style.rst
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/petsc/doc/petsc.bib
/petsc/gmakefile.test
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/petsc/include/petscis.h
/petsc/include/petscpctypes.h
/petsc/include/petscversion.h
/petsc/include/petscviewer.h
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/classes/_linter.py
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/petsc/src/binding/petsc4py/src/petsc4py/__init__.py
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/interface/dtprob.c
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/plex/plex.c
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/petsc/src/ksp/ksp/impls/cg/pipeprcg/pipeprcg.c
/petsc/src/ksp/ksp/impls/cg/stcg/stcg.c
/petsc/src/ksp/ksp/impls/cheby/cheby.c
/petsc/src/ksp/ksp/impls/cr/pipecr/pipecr.c
/petsc/src/ksp/ksp/impls/fcg/fcg.c
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/petsc/src/ksp/ksp/impls/fetidp/fetidp.c
/petsc/src/ksp/ksp/impls/gcr/gcr.c
/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c
/petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c
/petsc/src/ksp/ksp/impls/gmres/borthog.c
/petsc/src/ksp/ksp/impls/gmres/borthog2.c
/petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c
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/petsc/src/ksp/ksp/impls/gmres/fgmres/modpcf.c
/petsc/src/ksp/ksp/impls/gmres/gmpre.c
/petsc/src/ksp/ksp/impls/gmres/gmres.c
/petsc/src/ksp/ksp/impls/gmres/gmres2.c
/petsc/src/ksp/ksp/impls/gmres/lgmres/lgmres.c
/petsc/src/ksp/ksp/impls/gmres/pgmres/pgmres.c
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/impls/hpddm/hpddm.cxx
/petsc/src/ksp/ksp/impls/ibcgs/ibcgs.c
/petsc/src/ksp/ksp/impls/lcd/lcd.c
/petsc/src/ksp/ksp/impls/lsqr/lsqr.c
/petsc/src/ksp/ksp/impls/minres/minres.c
/petsc/src/ksp/ksp/impls/preonly/preonly.c
/petsc/src/ksp/ksp/impls/qcg/qcg.c
/petsc/src/ksp/ksp/impls/rich/rich.c
/petsc/src/ksp/ksp/impls/rich/richscale.c
/petsc/src/ksp/ksp/impls/symmlq/symmlq.c
/petsc/src/ksp/ksp/impls/tcqmr/tcqmr.c
/petsc/src/ksp/ksp/impls/tfqmr/tfqmr.c
/petsc/src/ksp/ksp/impls/tsirm/tsirm.c
/petsc/src/ksp/ksp/interface/dmksp.c
/petsc/src/ksp/ksp/interface/eige.c
/petsc/src/ksp/ksp/interface/iguess.c
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/petsc/src/ksp/ksp/interface/iterativ.c
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/petsc/src/ksp/ksp/tutorials/ex14f.F90
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/petsc/src/ksp/ksp/utils/dmproject.c
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.c
/petsc/src/ksp/pc/impls/amgx/amgx.cxx
/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
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/petsc/src/ksp/pc/impls/composite/composite.c
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/petsc/src/ksp/pc/impls/galerkin/galerkin.c
/petsc/src/ksp/pc/impls/gamg/agg.c
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/petsc/src/ksp/pc/impls/python/pythonpc.c
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/petsc/src/mat/utils/gcreate.c
/petsc/src/mat/utils/matstash.c
/petsc/src/snes/impls/composite/snescomposite.c
/petsc/src/snes/impls/fas/fas.c
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/petsc/src/snes/impls/fas/fasgalerkin.c
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/petsc/src/snes/interface/saws/snessaws.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesj.c
/petsc/src/snes/interface/snesj2.c
/petsc/src/snes/interface/snesob.c
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/petsc/src/snes/interface/snesut.c
/petsc/src/snes/linesearch/impls/basic/linesearchbasic.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/snes/linesearch/impls/nleqerr/linesearchnleqerr.c
/petsc/src/snes/linesearch/impls/shell/linesearchshell.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/linesearch/interface/linesearchregi.c
/petsc/src/snes/mf/snesmfj.c
/petsc/src/snes/tests/ex15.c
/petsc/src/snes/tutorials/ex17.c
/petsc/src/snes/tutorials/ex35.c
/petsc/src/snes/tutorials/ex36.c
/petsc/src/snes/tutorials/ex56.c
/petsc/src/snes/tutorials/ex62.c
/petsc/src/snes/tutorials/ex69.c
/petsc/src/snes/utils/convest.c
/petsc/src/snes/utils/dmadapt.c
/petsc/src/snes/utils/dmdasnes.c
/petsc/src/snes/utils/dmlocalsnes.c
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/sys/classes/bag/bag.c
/petsc/src/sys/classes/viewer/interface/view.c
/petsc/src/sys/classes/viewer/interface/viewreg.c
/petsc/src/sys/classes/viewer/tests/ex4.c
/petsc/src/sys/classes/viewer/tests/ex5.c
/petsc/src/sys/classes/viewer/tests/ex7.c
/petsc/src/sys/classes/viewer/tutorials/ex2.c
plog.c
/petsc/src/sys/objects/destroy.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/tests/ex50.c
/petsc/src/sys/tests/ex52.c
/petsc/src/sys/tests/options/ex55.c
/petsc/src/ts/impls/implicit/alpha/alpha1.c
/petsc/src/ts/impls/implicit/alpha/alpha2.c
/petsc/src/ts/impls/implicit/glle/glle.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/interface/tsmon.c
/petsc/src/ts/tutorials/ex53.c
/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/is/tests/ex10.c
/petsc/src/vec/is/is/tests/ex9.c
/petsc/src/vec/is/is/tests/output/ex10_1.out
/petsc/src/vec/is/is/tests/output/ex10_2.out
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/is/sf/tests/ex18.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/tagger/tutorials/ex1.c
/petsc/src/vec/vec/utils/vecstash.c
f77274b727-Nov-2023 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/release'


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plog.c
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/petsc/src/tao/shell/taoshell.c
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/petsc/src/tao/unconstrained/impls/bmrm/bmrm.c
/petsc/src/tao/util/tao_util.c
/petsc/src/ts/event/tsevent.c
/petsc/src/ts/impls/implicit/discgrad/tsdiscgrad.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/tests/ex26.c
/petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex3_1.out
/petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex3_1_alt_2.out
/petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex3_1_alt_3.out
/petsc/src/ts/tutorials/ex11.c
/petsc/src/ts/tutorials/ex18.c
/petsc/src/ts/tutorials/output/ex11_5.out
/petsc/src/ts/tutorials/output/ex11_tut_2.out
/petsc/src/ts/utils/dmplexlandau/kokkos/makefile
/petsc/src/ts/utils/dmplexlandau/makefile
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/is/sf/impls/basic/neighbor/sfneighbor.c
/petsc/src/vec/vec/impls/seq/cupm/cuda/vecseqcupm.cu
/petsc/src/vec/vec/impls/seq/cupm/hip/vecseqcupm.hip.cpp
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/tests/ex24.c
4b7c4d4d27-Nov-2023 Pierre Jolivet <pierre@joliv.et>

Docs: fix some typos


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/base.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/packages/Matlab.py
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/petsc/doc/changes/2024.rst
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/petsc/src/ksp/ksp/tests/ex11.c
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_2_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tests/output/ex11_harmonic_overlap_1.out
/petsc/src/ksp/ksp/tests/output/ex11_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-0_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tests/output/ex11_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-0.out
/petsc/src/ksp/ksp/tests/output/ex11_test_fs-0_fc_pc_fieldsplit_off_diag_use_amat-1_fc_pc_fieldsplit_diag_use_amat-1.out
/petsc/src/ksp/ksp/tutorials/ex41.m
/petsc/src/ksp/ksp/tutorials/ex60.c
/petsc/src/ksp/ksp/tutorials/ex72.c
/petsc/src/ksp/ksp/tutorials/ex76.c
/petsc/src/ksp/ksp/tutorials/output/ex60_1_eigs.out
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/factor/factor.c
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/ksp/pc/impls/spai/dspai.c
/petsc/src/ksp/pc/impls/tfs/comm.c
/petsc/src/ksp/pc/interface/pcset.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqhipsparse/aijhipsparse.hip.cpp
/petsc/src/mat/impls/mffd/mffd.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex233.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/impls/ngmres/anderson.c
/petsc/src/snes/impls/ngmres/snesngmres.c
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/snes/impls/vi/vi.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/interface/snesut.c
/petsc/src/snes/tutorials/ex20.c
/petsc/src/snes/tutorials/ex29view.m
/petsc/src/snes/tutorials/ex5m.m
/petsc/src/snes/utils/dmdasnes.c
/petsc/src/snes/utils/dmlocalsnes.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/sys/classes/matlabengine/matlab.c
/petsc/src/sys/classes/viewer/impls/matlab/vmatlab.c
plog.c
/petsc/src/sys/objects/pinit.c
/petsc/src/tao/constrained/tutorials/tomographyADMM.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/interface/taosolver_hj.c
/petsc/src/tao/leastsquares/tutorials/cs1.c
/petsc/src/tao/leastsquares/tutorials/matlab/README
/petsc/src/tao/leastsquares/tutorials/matlab/TestingInitialize.m
/petsc/src/tao/leastsquares/tutorials/matlab/TestingPlot.m
/petsc/src/tao/leastsquares/tutorials/matlab/more_wild_probs/dfovec.m
/petsc/src/tao/leastsquares/tutorials/matlab/more_wild_probs/dfoxs.m
/petsc/src/tao/leastsquares/tutorials/tomographyGenerateData.m
/petsc/src/tao/shell/taoshell.c
/petsc/src/tao/unconstrained/impls/bmrm/bmrm.c
/petsc/src/ts/impls/implicit/discgrad/tsdiscgrad.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/utils/iscoloring.c
/petsc/src/vec/vec/impls/seq/cupm/cuda/vecseqcupm.cu
/petsc/src/vec/vec/impls/seq/cupm/hip/vecseqcupm.hip.cpp
/petsc/src/vec/vec/interface/rvector.c
9baa572403-Nov-2023 Satish Balay <balay@mcs.anl.gov>

Merge branch 'barry/2023-07-30/doc-better-blas-thread-usage' into 'main'

Start of PETSc benchmarking object

See merge request petsc/petsc!6772


/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/blis.py
/petsc/config/BuildSystem/config/packages/hpl.py
/petsc/config/BuildSystem/nargs.py
/petsc/doc/changes/dev.rst
/petsc/doc/manual/blas-lapack.rst
/petsc/include/petsc/finclude/petscsys.h
/petsc/include/petsc/private/bmimpl.h
/petsc/include/petscbm.h
/petsc/include/petscdm.h
/petsc/include/petscdmtypes.h
/petsc/include/petscmat.h
/petsc/include/petscsys.h
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/checks/_register.py
/petsc/lib/petsc/conf/bfort-petsc.txt
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/DM.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscdm.pxi
/petsc/src/dm/f90-mod/petscdm.h
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexdistribute.c
/petsc/src/dm/impls/plex/transform/interface/plextransform.c
/petsc/src/dm/interface/dm.c
/petsc/src/ksp/ksp/tutorials/ex2.c
/petsc/src/ksp/ksp/tutorials/output/ex2_help.out
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/mat/tests/ex182.c
/petsc/src/mat/tests/output/tmpbench_1.out
/petsc/src/mat/tests/tmpbench.c
/petsc/src/mat/tutorials/ex7.c
/petsc/src/mat/utils/hpl/hplcreate.c
/petsc/src/mat/utils/hpl/makefile
/petsc/src/sys/classes/bm/interfaces/bm.c
/petsc/src/sys/classes/bm/interfaces/ftn-custom/makefile
/petsc/src/sys/classes/bm/interfaces/ftn-custom/zbmf.c
/petsc/src/sys/classes/bm/interfaces/makefile
/petsc/src/sys/classes/bm/makefile
/petsc/src/sys/f90-mod/petscsys.h
plog.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/objects/version.c
ecceeb7d02-Nov-2023 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/release'


/petsc/config/BuildSystem/config/packages/Matlab.py
/petsc/config/PETSc/Configure.py
/petsc/config/examples/arch-ci-linux-matlab-ilp64.py
/petsc/doc/changes/2024.rst
/petsc/doc/changes/2029.rst
/petsc/doc/changes/220.rst
/petsc/doc/changes/300.rst
/petsc/doc/changes/35.rst
/petsc/doc/changes/dev.rst
/petsc/doc/developers/style.rst
/petsc/doc/manual/dmplex.rst
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscmatcoarsen.h
/petsc/include/petscsys.h
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/classes/_linter.py
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/classes/docs/_doc_section.py
/petsc/lib/petsc/bin/petsc_tas_analysis.py
/petsc/share/petsc/matlab/PetscBinaryRead.m
/petsc/share/petsc/matlab/PetscBinaryWrite.m
/petsc/share/petsc/matlab/PetscReadBinaryMatlab.m
/petsc/share/petsc/matlab/PetscReadBinaryTrajectory.m
/petsc/share/petsc/matlab/UFgetPetscMat.m
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/tests/ex1.c
/petsc/src/dm/impls/plex/tests/ex26f90.F90
/petsc/src/dm/impls/plex/tests/ex62f90.F90
/petsc/src/dm/impls/plex/tests/output/ex1_ball_2.out
/petsc/src/dm/impls/plex/tests/output/ex1_sphere_4.out
/petsc/src/dm/impls/plex/tutorials/ex8.c
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q1_discontinuous.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q1_q1_discontinuous.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q2_p0_discontinuous.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q2_q1.out
/petsc/src/dm/impls/swarm/tests/ex7.c
/petsc/src/dm/tests/ex12.m
/petsc/src/ksp/ksp/impls/bcgs/fbcgsr/fbcgsr.c
/petsc/src/ksp/ksp/impls/cg/cgimpl.h
/petsc/src/ksp/ksp/impls/fcg/fcg.c
/petsc/src/ksp/ksp/impls/fcg/fcgimpl.h
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/impls/minres/minres.c
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/ksp/interface/dmksp.c
/petsc/src/ksp/ksp/interface/eige.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/tutorials/bench_kspsolve.c
/petsc/src/ksp/ksp/tutorials/ex41.m
/petsc/src/ksp/ksp/tutorials/ex54.c
/petsc/src/ksp/ksp/tutorials/ex54f.F90
/petsc/src/ksp/ksp/tutorials/ex55.c
/petsc/src/ksp/ksp/tutorials/ex56.c
/petsc/src/ksp/ksp/tutorials/ex60.c
/petsc/src/ksp/ksp/tutorials/ex61f.F90
/petsc/src/ksp/ksp/tutorials/output/ex54_hem.out
/petsc/src/ksp/ksp/tutorials/output/ex54f_hem.out
/petsc/src/ksp/ksp/tutorials/output/ex54f_mis.out
/petsc/src/ksp/ksp/tutorials/output/ex54f_misk.out
/petsc/src/ksp/ksp/tutorials/output/ex56_2.out
/petsc/src/ksp/ksp/tutorials/output/ex60_1_eigs.out
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/mat/coarsen/impls/hem/hem.c
/petsc/src/mat/coarsen/impls/mis/mis.c
/petsc/src/mat/coarsen/impls/misk/misk.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/aij/seq/seqhipsparse/aijhipsparse.hip.cpp
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex69.c
/petsc/src/snes/f90-mod/petscsnes.h
/petsc/src/snes/impls/vi/rs/virs.c
/petsc/src/snes/tutorials/ex29view.m
/petsc/src/snes/tutorials/ex5m.m
/petsc/src/sys/classes/matlabengine/matlab.c
/petsc/src/sys/classes/random/interface/randreg.c
/petsc/src/sys/classes/viewer/impls/matlab/vmatlab.c
/petsc/src/sys/classes/viewer/impls/socket/send.c
plog.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/tests/ex6f.F90
/petsc/src/sys/tests/linter/output/testValidFunctionDocStrings.out
/petsc/src/sys/utils/sortso.c
/petsc/src/sys/yaml/include/yaml.h
/petsc/src/tao/constrained/tutorials/tomographyADMM.c
/petsc/src/tao/leastsquares/tutorials/cs1.c
/petsc/src/tao/leastsquares/tutorials/matlab/README
/petsc/src/tao/leastsquares/tutorials/matlab/TestingInitialize.m
/petsc/src/tao/leastsquares/tutorials/matlab/TestingPlot.m
/petsc/src/tao/leastsquares/tutorials/matlab/more_wild_probs/dfovec.m
/petsc/src/tao/leastsquares/tutorials/matlab/more_wild_probs/dfoxs.m
/petsc/src/tao/leastsquares/tutorials/tomographyGenerateData.m
/petsc/src/vec/is/sf/interface/vscat.c
/petsc/src/vec/vec/tutorials/ex7f.F90
b8004f3402-Nov-2023 Barry Smith <bsmith@mcs.anl.gov>

Trivial fixes for logging manual pages


/petsc/config/BuildSystem/nargs.py
/petsc/doc/changes/dev.rst
/petsc/doc/manual/dmplex.rst
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscmatcoarsen.h
/petsc/lib/petsc/bin/petsc_tas_analysis.py
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/tests/ex1.c
/petsc/src/dm/impls/plex/tests/output/ex1_ball_2.out
/petsc/src/dm/impls/plex/tests/output/ex1_sphere_4.out
/petsc/src/dm/impls/plex/tutorials/ex8.c
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q1_discontinuous.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q1_q1_discontinuous.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q2_p0_discontinuous.out
/petsc/src/dm/impls/plex/tutorials/output/ex8_2d_q2_q1.out
/petsc/src/ksp/ksp/impls/bcgs/fbcgsr/fbcgsr.c
/petsc/src/ksp/ksp/impls/cg/cgimpl.h
/petsc/src/ksp/ksp/impls/fcg/fcg.c
/petsc/src/ksp/ksp/impls/fcg/fcgimpl.h
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/tutorials/bench_kspsolve.c
/petsc/src/ksp/ksp/tutorials/ex54.c
/petsc/src/ksp/ksp/tutorials/ex54f.F90
/petsc/src/ksp/ksp/tutorials/ex55.c
/petsc/src/ksp/ksp/tutorials/ex56.c
/petsc/src/ksp/ksp/tutorials/ex60.c
/petsc/src/ksp/ksp/tutorials/output/ex54_hem.out
/petsc/src/ksp/ksp/tutorials/output/ex54f_hem.out
/petsc/src/ksp/ksp/tutorials/output/ex54f_mis.out
/petsc/src/ksp/ksp/tutorials/output/ex54f_misk.out
/petsc/src/ksp/ksp/tutorials/output/ex56_2.out
/petsc/src/ksp/ksp/tutorials/output/ex60_1_eigs.out
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/mat/coarsen/impls/hem/hem.c
/petsc/src/mat/coarsen/impls/mis/mis.c
/petsc/src/mat/coarsen/impls/misk/misk.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex69.c
/petsc/src/sys/classes/random/interface/randreg.c
/petsc/src/sys/classes/viewer/impls/socket/send.c
plog.c
/petsc/src/sys/yaml/include/yaml.h
dd01b7e502-Nov-2023 Barry Smith <bsmith@mcs.anl.gov>

Fix capitalization of fortran

Commit-type: housekeeping


/petsc/config/examples/arch-ci-linux-gcc-pkgs-opt.py
/petsc/doc/install/download.rst
/petsc/doc/manual/dmplex.rst
/petsc/gmakefile
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petscmat.h
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/classes/_linter.py
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/classes/docs/_doc_section.py
/petsc/lib/petsc/bin/petsc_tas_analysis.py
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Mat.pyx
/petsc/src/binding/petsc4py/src/petsc4py/__init__.py
/petsc/src/dm/impls/da/da.c
/petsc/src/dm/impls/plex/tests/ex26f90.F90
/petsc/src/dm/impls/plex/tests/ex62f90.F90
/petsc/src/dm/impls/swarm/swarm.c
/petsc/src/ksp/ksp/impls/bcgs/fbcgsr/fbcgsr.c
/petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/ksp/interface/dmksp.c
/petsc/src/ksp/ksp/interface/eige.c
/petsc/src/ksp/ksp/interface/iguess.c
/petsc/src/ksp/ksp/interface/itcl.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/ksp/interface/itfunc.c
/petsc/src/ksp/ksp/tutorials/bench_kspsolve.c
/petsc/src/ksp/ksp/tutorials/ex61f.F90
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/deflation/deflation.c
/petsc/src/mat/color/impls/greedy/greedy.c
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiptap.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/h2opus/cuda/math2opus.cu
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/tests/ex123.c
/petsc/src/mat/tests/ex231.cxx
/petsc/src/mat/tests/ex69.c
/petsc/src/mat/tests/output/ex66_view.out
/petsc/src/mat/tests/output/ex66_view_cuda.out
/petsc/src/snes/f90-mod/petscsnes.h
/petsc/src/snes/tutorials/ex10d/ex10.c
/petsc/src/sys/classes/random/impls/curand/curand.c
/petsc/src/sys/classes/random/impls/rand/rand.c
/petsc/src/sys/classes/random/impls/rand48/rand48.c
/petsc/src/sys/classes/random/impls/rander48/rander48.c
/petsc/src/sys/classes/random/impls/random123/random123.c
/petsc/src/sys/classes/random/impls/sprng/sprng.c
/petsc/src/sys/classes/random/interface/dlregisrand.c
/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/random/interface/randreg.c
/petsc/src/sys/classes/viewer/impls/socket/send.c
plog.c
/petsc/src/sys/objects/ftn-custom/zstart.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/tests/ex6f.F90
/petsc/src/sys/tests/linter/output/testValidFunctionDocStrings.out
/petsc/src/sys/utils/sortso.c
/petsc/src/sys/yaml/include/yaml.h
/petsc/src/ts/impls/multirate/mprk.c
/petsc/src/vec/is/sf/interface/vscat.c
/petsc/src/vec/vec/tutorials/ex7f.F90
294d477b31-Oct-2023 Satish Balay <balay@mcs.anl.gov>

Merge branch 'release'


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/config/BuildSystem/config/packages/slepc.py
/petsc/config/examples/arch-ci-linux-cmplx-single-arm.py
/petsc/config/examples/arch-ci-linux-gcc-pkgs-opt.py
/petsc/config/examples/arch-ci-linux-opt-arm.py
/petsc/config/examples/arch-ci-osx-arm.py
/petsc/config/examples/arch-ci-osx-cxx-pkgs-opt-arm.py
/petsc/doc/changes/dev.rst
/petsc/doc/install/download.rst
/petsc/doc/manual/getting_started.rst
/petsc/doc/manual/vec.rst
/petsc/gmakefile
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/mpiutils.h
/petsc/include/petsc/private/sfimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmceed.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmplexceed.h
/petsc/include/petscmat.h
/petsc/include/petscmatcoarsen.h
/petsc/include/petscvec.h
/petsc/include/petscversion.h
/petsc/share/petsc/suppressions/valgrind
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/DM.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Mat.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscdm.pxi
/petsc/src/binding/petsc4py/src/petsc4py/__init__.py
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/petsc/src/dm/impls/plex/tests/ex98.c
/petsc/src/dm/impls/plex/tests/ex98f90.F90
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/petsc/src/dm/impls/plex/tests/output/ex49_fv_0.out
/petsc/src/dm/impls/plex/tutorials/ex8.c
/petsc/src/dm/impls/plex/tutorials/ex9.c
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/impls/swarm/swarm.c
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/petsc/src/dm/impls/swarm/tests/output/ex4_bsi_2d_2_alt.out
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/petsc/src/dm/interface/dm.c
/petsc/src/dm/interface/dmceed.c
/petsc/src/dm/interface/dmcoordinates.c
/petsc/src/dm/interface/dmget.c
/petsc/src/dm/label/tutorials/ex1.c
/petsc/src/dm/label/tutorials/ex1f90.F90
/petsc/src/ksp/f90-mod/makefile
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/petsc/src/ksp/ksp/tutorials/ex54.c
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/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/classical.c
/petsc/src/ksp/pc/impls/gamg/geo.c
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/coarsen/coarsen.c
/petsc/src/mat/coarsen/impls/hem/hem.c
/petsc/src/mat/coarsen/impls/misk/misk.c
/petsc/src/mat/color/impls/greedy/greedy.c
/petsc/src/mat/f90-mod/petscmat.h90
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiptap.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/h2opus/cuda/math2opus.cu
/petsc/src/mat/impls/hypre/mhypre.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/interface/f90-custom/zmatrixf90.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/order/makefile
/petsc/src/mat/tests/ex123.c
/petsc/src/mat/tests/ex231.cxx
/petsc/src/mat/tests/output/ex66_view.out
/petsc/src/mat/tests/output/ex66_view_cuda.out
/petsc/src/snes/impls/ngmres/anderson.c
/petsc/src/snes/impls/ngmres/ngmresfunc.c
/petsc/src/snes/impls/ngmres/snesngmres.c
/petsc/src/snes/impls/ngmres/snesngmres.h
/petsc/src/snes/linesearch/impls/basic/linesearchbasic.c
/petsc/src/snes/linesearch/impls/bt/linesearchbt.c
/petsc/src/snes/linesearch/impls/cp/linesearchcp.c
/petsc/src/snes/linesearch/impls/l2/linesearchl2.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/tutorials/ex10d/ex10.c
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/petsc/src/sys/classes/draw/interface/dtri.c
/petsc/src/sys/classes/draw/interface/dviewp.c
/petsc/src/sys/classes/draw/utils/bars.c
/petsc/src/sys/classes/random/impls/curand/curand.c
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/petsc/src/sys/classes/random/impls/rand48/rand48.c
/petsc/src/sys/classes/random/impls/rander48/rander48.c
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/petsc/src/sys/classes/random/impls/sprng/sprng.c
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/petsc/src/sys/classes/random/interface/randomc.c
/petsc/src/sys/classes/viewer/utils/btview.c
/petsc/src/sys/dll/reg.c
handler/interface/loghandler.c
plog.c
/petsc/src/sys/objects/inherit.c
/petsc/src/tao/snes/taosnes.c
/petsc/src/tao/unconstrained/tutorials/minsurf2.c
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/petsc/src/tao/unconstrained/tutorials/output/minsurf2_4_snes_ngmres_snes_ngmres_select_type-difference.out
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/petsc/src/ts/impls/multirate/mprk.c
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/petsc/src/ts/tutorials/output/ex11_euler_ceed.out
/petsc/src/ts/tutorials/output/ex11_sw_ceed.out
/petsc/src/ts/utils/dmplexts.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/is/sf/impls/basic/allgather/sfallgather.c
/petsc/src/vec/is/sf/impls/basic/allgatherv/sfallgatherv.c
/petsc/src/vec/is/sf/impls/basic/alltoall/sfalltoall.c
/petsc/src/vec/is/sf/impls/basic/gather/sfgather.c
/petsc/src/vec/is/sf/impls/basic/gatherv/sfgatherv.c
/petsc/src/vec/is/sf/impls/basic/neighbor/sfneighbor.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/is/sf/impls/basic/sfbasic.h
/petsc/src/vec/is/sf/impls/basic/sfmpi.c
/petsc/src/vec/is/sf/impls/basic/sfpack.c
/petsc/src/vec/is/sf/impls/basic/sfpack.h
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/sf/tests/ex9.c
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/impls/mpi/pvecimpl.h
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/tutorials/ex9.c
/petsc/src/vec/vec/tutorials/output/ex9_5.out
/petsc/src/vec/vec/tutorials/output/ex9_6.out
/petsc/src/vec/vec/utils/tagger/interface/tagger.c
8f14a04127-Oct-2023 Barry Smith <bsmith@mcs.anl.gov>

Remove unneeded on in Collective statements and fix Collective over

Commit-type: documentation


/petsc/.gitlab-ci.yml
/petsc/config/BuildSystem/config/packages/hip.py
/petsc/config/BuildSystem/config/packages/hpddm.py
/petsc/config/BuildSystem/config/packages/mpi4py.py
/petsc/config/BuildSystem/config/packages/sycl.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/examples/arch-ci-linux-cmplx-single-arm.py
/petsc/config/examples/arch-ci-linux-opt-arm.py
/petsc/config/examples/arch-ci-osx-arm.py
/petsc/config/examples/arch-ci-osx-cxx-pkgs-opt-arm.py
/petsc/doc/community/meetings/meeting.rst
/petsc/doc/conf.py
/petsc/doc/faq/index.rst
/petsc/doc/manual/getting_started.rst
/petsc/doc/manual/ksp.rst
/petsc/doc/manual/mat.rst
/petsc/doc/manual/vec.rst
/petsc/doc/petsc.bib
/petsc/gmakefile
/petsc/gmakefile.test
/petsc/include/petscmat.h
/petsc/include/petscvec.h
/petsc/lib/petsc/conf/rules.doc
/petsc/makefile
/petsc/src/binding/petsc4py/conf/confpetsc.py
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/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Mat.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/PETSc.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/SNES.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Vec.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/libpetsc4py.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscdmda.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscmat.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscsnes.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscvec.pxi
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/petsc/src/dm/impls/moab/dmmoab.cxx
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/tests/output/ex13_0.out
/petsc/src/dm/impls/shell/dmshell.c
/petsc/src/dm/impls/stag/stagutils.c
/petsc/src/dm/impls/swarm/tests/output/ex4_bsi_2d_1_alt.out
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/petsc/src/ksp/ksp/tutorials/ex56.c
/petsc/src/ksp/ksp/tutorials/ex87.c
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/petsc/src/ksp/pc/impls/asm/asm.c
/petsc/src/ksp/pc/impls/bddc/bddc.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/ksp/pc/impls/ml/ml.c
/petsc/src/mat/f90-mod/petscmat.h90
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/seqhipsparse/aijhipsparse.hip.cpp
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/scatter/mscatter.c
/petsc/src/mat/impls/shell/ftn-custom/zshellf.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/interface/f90-custom/zmatrixf90.c
/petsc/src/mat/tutorials/ex20f.F90
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/petsc/src/mat/utils/axpy.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/tutorials/output/ex19_tut_3_alt.out
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/petsc/src/sys/classes/draw/interface/dtri.c
/petsc/src/sys/classes/draw/interface/dviewp.c
/petsc/src/sys/classes/draw/utils/bars.c
/petsc/src/sys/classes/viewer/utils/btview.c
/petsc/src/sys/dll/reg.c
/petsc/src/sys/fileio/sysio.c
handler/interface/loghandler.c
plog.c
/petsc/src/sys/objects/destroy.c
/petsc/src/sys/objects/inherit.c
/petsc/src/sys/objects/pgname.c
/petsc/src/sys/objects/pname.c
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/ts/interface/ts.c
/petsc/src/vec/is/is/interface/index.c
/petsc/src/vec/vec/impls/mpi/cupm/cuda/vecmpicupm.cu
/petsc/src/vec/vec/impls/mpi/cupm/hip/vecmpicupm.hip.cpp
/petsc/src/vec/vec/impls/seq/cupm/cuda/vecseqcupm.cu
/petsc/src/vec/vec/impls/seq/cupm/hip/vecseqcupm.hip.cpp
/petsc/src/vec/vec/impls/seq/cupm/vecseqcupm_impl.hpp
/petsc/src/vec/vec/tutorials/ex1.c
/petsc/src/vec/vec/tutorials/output/ex1_1.out
/petsc/src/vec/vec/utils/tagger/interface/tagger.c
cb5db24125-Oct-2023 Barry Smith <bsmith@mcs.anl.gov>

Rename rules.doc and rules.utils because GitLab treats the former as a MS Word document.

Thanks-to: Jed Brown


/petsc/config/BuildSystem/config/packages/hpddm.py
/petsc/config/BuildSystem/config/packages/libpng.py
/petsc/config/BuildSystem/config/setCompilers.py
/petsc/config/install.py
/petsc/doc/community/meetings/meeting.rst
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66af876218-Oct-2023 Barry Smith <bsmith@mcs.anl.gov>

Remove DIRS variable and unneeded tabs from all makefiles since no longer needed

Commit-type: housekeeping


/petsc/.dir-locals.el
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/petsc/config/BuildSystem/config/packages/mpi4py.py
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/petsc/config/BuildSystem/config/packages/zlib.py
/petsc/config/gmakegen.py
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/petsc/doc/changes/dev.rst
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/petsc/doc/faq/index.rst
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baca607604-Oct-2023 Pierre Jolivet <pierre@joliv.et>

Fix typos


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/petsc/config/BuildSystem/config/packages/MFEM.py
/petsc/config/BuildSystem/config/packages/MPI.py
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/petsc/src/mat/impls/aij/seq/inode.c
/petsc/src/mat/impls/aij/seq/seqhipsparse/aijhipsparse.hip.cpp
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/fft/fft.c
/petsc/src/mat/impls/normal/normmh.c
/petsc/src/mat/impls/sell/seq/sell.h
/petsc/src/mat/tests/ex261.c
/petsc/src/mat/tests/mmio.c
/petsc/src/snes/utils/dmlocalsnes.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/error/errabort.c
handler/impls/mpe/logmpe.c
handler/interface/loghandler.c
plog.c
/petsc/src/sys/objects/device/interface/dcontext.cxx
/petsc/src/sys/objects/device/interface/petscdevice_interface_internal.hpp
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/tests/ex68.c
/petsc/src/tao/constrained/tutorials/ex1.c
/petsc/src/ts/interface/sensitivity/tssen.c
/petsc/src/ts/interface/ts.c
/petsc/src/ts/tutorials/ex23fwdadj.c
/petsc/src/ts/tutorials/extchemfield.c
92bec4ee26-Sep-2023 Pierre Jolivet <pierre@joliv.et>

Remove first and last empty lines


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/petsc/src/vec/vec/tutorials/ex43f.F90
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/petsc/src/vec/vec/utils/tagger/impls/absolute.c
/petsc/src/vec/vec/utils/tagger/impls/and.c
/petsc/src/vec/vec/utils/tagger/impls/cdf.c
/petsc/src/vec/vec/utils/tagger/impls/or.c
/petsc/src/vec/vec/utils/tagger/impls/relative.c
/petsc/src/vec/vec/utils/tagger/impls/simple.c
/petsc/src/vec/vec/utils/tagger/tutorials/ex1.c
/petsc/src/vec/vec/utils/vecio.c
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/petsc/src/vec/vec/utils/vecstash.c
/petsc/src/vec/vec/utils/vinv.c
61cc744821-Sep-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Create PETSCLOGHANDLERNVTX


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/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_deluxe_layers_adapt_cuda_approx_matis_localmat_type-seqaijcusparse.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_dir_approx.out
/petsc/src/ksp/ksp/tutorials/output/ex71_bddc_elast_neu_approx.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_cuda_nsize-1.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_cuda_nsize-2.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_kokkos_nsize-1.out
/petsc/src/ksp/ksp/tutorials/output/ex7_gamg_kokkos_nsize-2.out
/petsc/src/ksp/ksp/tutorials/output/ex87_1_system-elasticity.out
/petsc/src/ksp/ksp/tutorials/output/ex87_1_system-stokes.out
/petsc/src/ksp/pc/impls/bjacobi/bjkokkos/bjkokkos.kokkos.cxx
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/gamg/agg.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/impls/gamg/util.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/mat/coarsen/impls/hem/hem.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/baij/mpi/baijov.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/baij/mpi/mpibaij.h
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/cdiagonal/cdiagonal.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/diagonal/diagonal.c
/petsc/src/mat/impls/htool/htool.cxx
/petsc/src/mat/impls/kaij/kaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
/petsc/src/mat/impls/sbaij/mpi/sbaijov.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/sbaij/seq/sbaij2.c
/petsc/src/mat/impls/scalapack/matscalapack.c
/petsc/src/mat/interface/matrix.c
/petsc/src/mat/utils/axpy.c
/petsc/src/mat/utils/gcreate.c
/petsc/src/snes/tests/output/ex13_comparison.out
/petsc/src/snes/tutorials/ex13.c
/petsc/src/snes/tutorials/ex19.c
/petsc/src/snes/tutorials/ex56.c
/petsc/src/snes/tutorials/output/ex12_39.out
/petsc/src/snes/tutorials/output/ex13_2d_q1_ceed_conv.out
/petsc/src/snes/tutorials/output/ex13_2d_q2_ceed_conv.out
/petsc/src/snes/tutorials/output/ex13_2d_q3_ceed_conv.out
/petsc/src/snes/tutorials/output/ex19_hip_2.out
/petsc/src/snes/tutorials/output/ex20_2d_p1_scalable_rate.out
/petsc/src/snes/tutorials/output/ex56_0.out
/petsc/src/snes/tutorials/output/ex56_1.out
/petsc/src/snes/tutorials/output/ex56_2.out
/petsc/src/snes/tutorials/output/ex56_attach_mat_nearnullspace-0_bddc_approx_gamg.out
/petsc/src/snes/tutorials/output/ex56_attach_mat_nearnullspace-1_bddc_approx_gamg.out
/petsc/src/snes/utils/dmplexsnes.c
/petsc/src/sys/error/err.c
/petsc/src/sys/error/errtrace.c
handler/impls/default/logdefault.c
handler/impls/makefile
handler/impls/nvtx/lognvtx.c
handler/impls/nvtx/makefile
handler/interface/lhreg.c
plog.c
/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/tests/ex1.c
/petsc/src/sys/tests/ex30.c
/petsc/src/sys/tests/output/ex1_1.out
/petsc/src/sys/tests/output/ex30_10.out
/petsc/src/tao/tutorials/output/ex3_guess_pod.out
/petsc/src/ts/utils/dmlocalts.c
/petsc/src/vec/is/section/interface/section.c
/petsc/src/vec/is/sf/impls/basic/cupm/cuda/makefile
/petsc/src/vec/is/sf/impls/basic/cupm/cuda/sfcupm.cu
/petsc/src/vec/is/sf/impls/basic/cupm/hip/makefile
/petsc/src/vec/is/sf/impls/basic/cupm/hip/sfcupm.hip.cpp
/petsc/src/vec/is/sf/impls/basic/cupm/makefile
/petsc/src/vec/is/sf/impls/basic/cupm/sfcupm.hpp
/petsc/src/vec/is/sf/impls/basic/cupm/sfcupm_impl.hpp
/petsc/src/vec/is/sf/impls/basic/makefile
/petsc/src/vec/is/sf/tests/ex22.c
/petsc/src/vec/is/sf/tests/ex23.c
/petsc/src/vec/is/sf/tests/output/ex22.out
/petsc/src/vec/is/sf/tests/output/ex23.out
3e446a5e07-Sep-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: fix PetscLogHandlerEventsPause_Default()


/petsc/config/examples/arch-ci-linux-gcc-pkgs-opt.py
/petsc/config/examples/arch-ci-linux-xsdk-dbg.py
/petsc/doc/changes/dev.rst
/petsc/doc/petsc.bib
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/dmswarmimpl.h
/petsc/include/petsc/private/pcpatchimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmswarm.h
/petsc/include/petscksp.h
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/DM.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/DMSwarm.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscdm.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscdmswarm.pxi
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/tests/ex56.c
/petsc/src/dm/impls/swarm/data_bucket.h
/petsc/src/dm/impls/swarm/swarmpic.c
/petsc/src/dm/impls/swarm/swarmpic_da.c
/petsc/src/dm/impls/swarm/swarmpic_plex.c
/petsc/src/dm/impls/swarm/tests/ex2.c
/petsc/src/dm/impls/swarm/tutorials/ex1.c
/petsc/src/dm/impls/swarm/tutorials/output/ex1_0.out
/petsc/src/dm/impls/swarm/tutorials/output/ex1_bjacobi.out
/petsc/src/dm/interface/dm.c
/petsc/src/dm/label/dmlabel.c
/petsc/src/dm/tutorials/ex21.c
/petsc/src/dm/tutorials/output/ex20_2.out
/petsc/src/ksp/ksp/tutorials/ex70.c
/petsc/src/ksp/ksp/utils/dmproject.c
/petsc/src/ksp/pc/impls/patch/pcpatch.c
handler/impls/default/logdefault.c
/petsc/src/sys/tests/ex68.c
/petsc/src/sys/tests/ex72.c
/petsc/src/sys/tests/output/ex72_0.out
/petsc/src/ts/tests/ex17.c
6b2a052c05-Sep-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Try to unwind nested handler stack as much as possible

To avoid erroring in the log handler in the event that a log event doesn't end
for whatever reason


handler/impls/nested/lognested.c
handler/impls/nested/lognested.h
c244758e05-Sep-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Fix nested log handler performance data not being in tree order


/petsc/config/BuildSystem/config/packages/hpddm.py
/petsc/config/BuildSystem/config/packages/slepc.py
/petsc/doc/changes/dev.rst
/petsc/include/petsc/private/kspimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petscdt.h
/petsc/include/petscdualspace.h
/petsc/include/petscfe.h
/petsc/include/petscksp.h
/petsc/include/petscspace.h
/petsc/src/dm/dt/dualspace/impls/lagrange/dspacelagrange.c
/petsc/src/dm/dt/dualspace/impls/makefile
/petsc/src/dm/dt/dualspace/impls/sum/dualspacesum.c
/petsc/src/dm/dt/dualspace/impls/sum/makefile
/petsc/src/dm/dt/dualspace/interface/dualspace.c
/petsc/src/dm/dt/fe/impls/basic/febasic.c
/petsc/src/dm/dt/fe/impls/makefile
/petsc/src/dm/dt/fe/impls/vector/fevector.c
/petsc/src/dm/dt/fe/impls/vector/makefile
/petsc/src/dm/dt/fe/interface/fe.c
/petsc/src/dm/dt/space/impls/poly/spacepoly.c
/petsc/src/dm/dt/space/impls/subspace/spacesubspace.c
/petsc/src/dm/dt/space/impls/sum/spacesum.c
/petsc/src/dm/dt/tests/ex16.c
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/petsc/src/dm/impls/plex/tests/output/ex5_quad_t3_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tet_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tet_1.out
/petsc/src/dm/impls/plex/tests/output/ex5_tet_t1_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_1.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t1_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t2_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t3_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t4_0.out
/petsc/src/dm/impls/plex/tests/output/ex5_tri_t5_0.out
/petsc/src/dm/impls/plex/tests/output/ex65_ext_coord_space.out
/petsc/src/dm/impls/stag/tests/ex18.c
/petsc/src/dm/interface/dmregall.c
/petsc/src/ksp/ksp/impls/hpddm/hpddm.cxx
/petsc/src/ksp/ksp/impls/minres/minres.c
/petsc/src/ksp/ksp/impls/preonly/preonly.c
/petsc/src/ksp/ksp/tutorials/ex84.c
/petsc/src/ksp/ksp/tutorials/ex87.c
/petsc/src/ksp/ksp/tutorials/output/ex84_1.out
/petsc/src/ksp/ksp/tutorials/output/ex87_1_petsc_system-elasticity.out
/petsc/src/ksp/ksp/tutorials/output/ex87_1_system-elasticity.out
/petsc/src/ksp/ksp/tutorials/output/ex87_1_system-stokes.out
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/ksp/pc/impls/redistribute/redistribute.c
/petsc/src/mat/impls/baij/mpi/mpibaij.c
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.c
handler/impls/nested/lognested.c
/petsc/src/vec/vec/tests/ex2k.c
8025bc2502-Sep-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: Fix typo 'TAOSolve' -> 'TaoSolve'


/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/SuperLU.py
/petsc/config/BuildSystem/config/packages/butterflypack.py
/petsc/config/BuildSystem/config/packages/cmake.py
/petsc/config/BuildSystem/config/packages/hpddm.py
/petsc/config/BuildSystem/config/packages/slate.py
/petsc/config/BuildSystem/config/packages/slepc.py
/petsc/config/BuildSystem/config/packages/strumpack.py
/petsc/config/BuildSystem/config/packages/zfp.py
/petsc/config/examples/arch-ci-linux-cuda-pkgs.py
/petsc/config/petsc_harness.sh
/petsc/doc/changes/dev.rst
/petsc/doc/developers/style.rst
/petsc/doc/faq/index.rst
/petsc/doc/install/download.rst
/petsc/include/petsc/finclude/petscmat.h
/petsc/include/petsc/private/snesimpl.h
/petsc/include/petscdevice.h
/petsc/include/petscmat.h
/petsc/include/petscpctypes.h
/petsc/include/petscversion.h
/petsc/lib/petsc/bin/maint/check_header_guard.py
/petsc/lib/petsc/bin/petscmpiexec
/petsc/lib/petsc/conf/bfort-petsc.txt
/petsc/lib/petsc/conf/rules.utils
/petsc/share/petsc/suppressions/ubsan
/petsc/share/petsc/suppressions/valgrind
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/CAPI.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/Comm.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/PETSc.pyx
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/petscmpi.pxi
/petsc/src/binding/petsc4py/src/petsc4py/__init__.py
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexpreallocate.c
/petsc/src/ksp/ksp/tutorials/ex52.c
/petsc/src/ksp/ksp/tutorials/ex76.c
/petsc/src/ksp/ksp/tutorials/ex87.c
/petsc/src/ksp/ksp/tutorials/output/ex87_1_petsc_system-elasticity.out
/petsc/src/ksp/ksp/tutorials/output/ex87_1_petsc_system-stokes.out
/petsc/src/ksp/ksp/tutorials/output/ex87_1_system-elasticity.out
/petsc/src/ksp/ksp/tutorials/output/ex87_1_system-stokes.out
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/ksp/pc/impls/tfs/comm.c
/petsc/src/mat/coarsen/impls/hem/hem.c
/petsc/src/mat/f90-mod/petscmat.h
/petsc/src/mat/impls/aij/mpi/mpiaij.c
/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/mpi/strumpack/strumpack.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/matmatmult.c
/petsc/src/mat/impls/baij/mpi/baijov.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baij.h
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/impls/maij/maij.c
/petsc/src/mat/impls/mffd/wp.c
/petsc/src/mat/impls/sbaij/seq/sbaij.c
/petsc/src/mat/impls/sell/seq/seqcuda/sellcuda.cu
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/interface/noise/snesdnest.c
/petsc/src/snes/interface/snes.c
handler/impls/default/logdefault.c
/petsc/src/sys/objects/device/interface/dcontext.cxx
/petsc/src/sys/utils/mpimesg.c
/petsc/src/sys/utils/mpits.c
/petsc/src/sys/utils/segbuffer.c
/petsc/src/tao/bound/impls/bnk/bnk.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/unconstrained/impls/nls/nls.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/tests/ex5.c
/petsc/src/ts/tutorials/output/ex20adj_imex.out
/petsc/src/vec/is/sf/impls/basic/sfbasic.c
/petsc/src/vec/is/sf/impls/basic/sfmpi.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/sf/interface/vscat.c
a496304518-Aug-2023 Jacob Faibussowitsch <jacob.fai@gmail.com>

Convert all header guards to pragma once


/petsc/.clang-format
/petsc/doc/changes/dev.rst
/petsc/include/petsc.h
/petsc/include/petsc/private/bagimpl.h
/petsc/include/petsc/private/characteristicimpl.h
/petsc/include/petsc/private/cpp/array.hpp
/petsc/include/petsc/private/cpp/crtp.hpp
/petsc/include/petsc/private/cpp/functional.hpp
/petsc/include/petsc/private/cpp/macros.hpp
/petsc/include/petsc/private/cpp/memory.hpp
/petsc/include/petsc/private/cpp/object_pool.hpp
/petsc/include/petsc/private/cpp/register_finalize.hpp
/petsc/include/petsc/private/cpp/tuple.hpp
/petsc/include/petsc/private/cpp/type_traits.hpp
/petsc/include/petsc/private/cpp/unordered_map.hpp
/petsc/include/petsc/private/cpp/utility.hpp
/petsc/include/petsc/private/cpputil.hpp
/petsc/include/petsc/private/cupmatomics.hpp
/petsc/include/petsc/private/cupmblasinterface.hpp
/petsc/include/petsc/private/cupminterface.hpp
/petsc/include/petsc/private/cupmobject.hpp
/petsc/include/petsc/private/cupmsolverinterface.hpp
/petsc/include/petsc/private/deviceimpl.h
/petsc/include/petsc/private/dmadaptorimpl.h
/petsc/include/petsc/private/dmdaimpl.h
/petsc/include/petsc/private/dmfieldimpl.h
/petsc/include/petsc/private/dmforestimpl.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmlabelimpl.h
/petsc/include/petsc/private/dmmbimpl.h
/petsc/include/petsc/private/dmnetworkimpl.h
/petsc/include/petsc/private/dmpatchimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/dmplextransformimpl.h
/petsc/include/petsc/private/dmproductimpl.h
/petsc/include/petsc/private/dmstagimpl.h
/petsc/include/petsc/private/dmswarmimpl.h
/petsc/include/petsc/private/drawimpl.h
/petsc/include/petsc/private/dtimpl.h
/petsc/include/petsc/private/f90impl.h
/petsc/include/petsc/private/fortranimpl.h
/petsc/include/petsc/private/garbagecollector.h
/petsc/include/petsc/private/glvisvecimpl.h
/petsc/include/petsc/private/glvisviewerimpl.h
/petsc/include/petsc/private/hashijkey.h
/petsc/include/petsc/private/hashijkkey.h
/petsc/include/petsc/private/hashijklkey.h
/petsc/include/petsc/private/hashmap.h
/petsc/include/petsc/private/hashmapi.h
/petsc/include/petsc/private/hashmapij.h
/petsc/include/petsc/private/hashmapijk.h
/petsc/include/petsc/private/hashmapijkl.h
/petsc/include/petsc/private/hashmapijv.h
/petsc/include/petsc/private/hashmapiv.h
/petsc/include/petsc/private/hashmapobj.h
/petsc/include/petsc/private/hashset.h
/petsc/include/petsc/private/hashseti.h
/petsc/include/petsc/private/hashsetij.h
/petsc/include/petsc/private/hashtable.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petsc/private/kernels/blockinvert.h
/petsc/include/petsc/private/kernels/blockmatmult.h
/petsc/include/petsc/private/kernels/blocktranspose.h
/petsc/include/petsc/private/kernels/petscaxpy.h
/petsc/include/petsc/private/kspimpl.h
/petsc/include/petsc/private/linesearchimpl.h
/petsc/include/petsc/private/loghandlerimpl.h
/petsc/include/petsc/private/logimpl.h
/petsc/include/petsc/private/logimpldeprecated.h
/petsc/include/petsc/private/matdensecupmimpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/matisimpl.h
/petsc/include/petsc/private/matorderimpl.h
/petsc/include/petsc/private/mempoison.h
/petsc/include/petsc/private/mpiutils.h
/petsc/include/petsc/private/partitionerimpl.h
/petsc/include/petsc/private/pcasmimpl.h
/petsc/include/petsc/private/pcbddcimpl.h
/petsc/include/petsc/private/pcbddcprivateimpl.h
/petsc/include/petsc/private/pcbddcstructsimpl.h
/petsc/include/petsc/private/pcbjkokkosimpl.h
/petsc/include/petsc/private/pcgamgimpl.h
/petsc/include/petsc/private/pcimpl.h
/petsc/include/petsc/private/pcisimpl.h
/petsc/include/petsc/private/pcmgimpl.h
/petsc/include/petsc/private/pcpatchimpl.h
/petsc/include/petsc/private/petscadvancedmacros.h
/petsc/include/petsc/private/petscconvestimpl.h
/petsc/include/petsc/private/petscdsimpl.h
/petsc/include/petsc/private/petscelemental.h
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petsc/private/petscfptimpl.h
/petsc/include/petsc/private/petscfvimpl.h
/petsc/include/petsc/private/petschpddm.h
/petsc/include/petsc/private/petschypre.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/petsclegacycupmblas.h
/petsc/include/petsc/private/petscscalapack.h
/petsc/include/petsc/private/randomimpl.h
/petsc/include/petsc/private/sectionimpl.h
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/petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcrimpl.h
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/petsc/src/ksp/ksp/impls/lcd/lcdimpl.h
/petsc/src/ksp/ksp/impls/qcg/qcgimpl.h
/petsc/src/ksp/ksp/impls/rich/richardsonimpl.h
/petsc/src/ksp/ksp/impls/tcqmr/tcqmrimpl.h
/petsc/src/ksp/ksp/tests/raja/memoryManager.hpp
/petsc/src/ksp/ksp/tutorials/amrex/MyEB.H
/petsc/src/ksp/ksp/tutorials/amrex/MyTest.H
/petsc/src/ksp/ksp/tutorials/ex43-solcx.h
/petsc/src/ksp/ksp/utils/lmvm/brdn/brdn.h
/petsc/src/ksp/ksp/utils/lmvm/diagbrdn/diagbrdn.h
/petsc/src/ksp/ksp/utils/lmvm/lmvm.h
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.h
/petsc/src/ksp/ksp/utils/schurm/schurm.h
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.h
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/petsc/src/ksp/pc/impls/is/nn/nn.h
/petsc/src/ksp/pc/impls/pbjacobi/pbjacobi.h
/petsc/src/ksp/pc/impls/spai/petscspai.h
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/petsc/src/ksp/pc/impls/tfs/tfs.h
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/petsc/src/mat/color/impls/minpack/color.h
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/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.h
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/petsc/src/mat/impls/aij/seq/kokkos/aijkok.hpp
/petsc/src/mat/impls/aij/seq/seqcusparse/cusparsematimpl.h
/petsc/src/mat/impls/aij/seq/seqhipsparse/hipsparsematimpl.h
/petsc/src/mat/impls/aij/seq/seqviennacl/viennaclmatimpl.h
/petsc/src/mat/impls/baij/mpi/mpibaij.h
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/petsc/src/mat/impls/dense/mpi/cupm/matmpidensecupm.hpp
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/petsc/src/mat/impls/dense/seq/cupm/matseqdensecupm.hpp
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/petsc/src/mat/impls/fft/fft.h
/petsc/src/mat/impls/h2opus/math2opussampler.hpp
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/petsc/src/mat/impls/kaij/kaij.h
/petsc/src/mat/impls/maij/maij.h
/petsc/src/mat/impls/mffd/mffdimpl.h
/petsc/src/mat/impls/nest/matnestimpl.h
/petsc/src/mat/impls/sbaij/mpi/mpisbaij.h
/petsc/src/mat/impls/sbaij/seq/cholmod/cholmodimpl.h
/petsc/src/mat/impls/sbaij/seq/sbaij.h
/petsc/src/mat/impls/sell/mpi/mpicuda/mpicudamatimpl.h
/petsc/src/mat/impls/sell/mpi/mpisell.h
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/petsc/src/mat/tests/cJSON.h
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/petsc/src/mat/tests/mmloader.h
/petsc/src/mat/tutorials/ex18.h
/petsc/src/mat/utils/freespace.h
/petsc/src/snes/impls/fas/fasimpls.h
/petsc/src/snes/impls/gs/gsimpl.h
/petsc/src/snes/impls/ls/lsimpl.h
/petsc/src/snes/impls/ncg/snesncgimpl.h
/petsc/src/snes/impls/ngmres/snesngmres.h
/petsc/src/snes/impls/ntrdc/ntrdcimpl.h
/petsc/src/snes/impls/richardson/snesrichardsonimpl.h
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/petsc/src/snes/impls/vi/rs/virsimpl.h
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/petsc/src/snes/tutorials/network/water/water.h
/petsc/src/sys/classes/draw/impls/image/drawimage.h
/petsc/src/sys/classes/draw/impls/win32/win32draw.h
/petsc/src/sys/classes/draw/impls/x/ximpl.h
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/petsc/src/sys/classes/draw/utils/cmap/plasma.h
/petsc/src/sys/classes/draw/utils/cmap/viridis.h
/petsc/src/sys/classes/viewer/impls/ascii/asciiimpl.h
/petsc/src/sys/classes/viewer/impls/draw/vdraw.h
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.h
/petsc/src/sys/classes/viewer/impls/socket/socket.h
/petsc/src/sys/classes/viewer/impls/vtk/vtkvimpl.h
/petsc/src/sys/error/err.h
/petsc/src/sys/fileio/mprint.h
handler/impls/default/logdefault.h
handler/impls/nested/lognested.h
handler/impls/nested/xmlviewer.h
/petsc/src/sys/objects/device/impls/cupm/cupmallocator.hpp
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/petsc/src/sys/objects/device/impls/cupm/cupmevent.hpp
/petsc/src/sys/objects/device/impls/cupm/cupmstream.hpp
/petsc/src/sys/objects/device/impls/cupm/cupmthrustutility.hpp
/petsc/src/sys/objects/device/impls/cupm/kernels.hpp
/petsc/src/sys/objects/device/impls/host/hostdevice.hpp
/petsc/src/sys/objects/device/impls/impldevicebase.hpp
/petsc/src/sys/objects/device/impls/segmentedmempool.hpp
/petsc/src/sys/objects/device/impls/sycl/sycldevice.hpp
/petsc/src/sys/objects/device/interface/petscdevice_interface_internal.hpp
/petsc/src/sys/objects/device/tests/petscdevicetestcommon.h
/petsc/src/sys/tests/linter/testheader.h
/petsc/src/sys/totalview/tv_data_display.h
/petsc/src/sys/utils/ftn-kernels/fcopy.h
/petsc/src/tao/bound/impls/blmvm/blmvm.h
/petsc/src/tao/bound/impls/bncg/bncg.h
/petsc/src/tao/bound/impls/bnk/bnk.h
/petsc/src/tao/bound/impls/bqnk/bqnk.h
/petsc/src/tao/bound/impls/tron/tron.h
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/petsc/src/tao/leastsquares/impls/brgn/brgn.h
/petsc/src/tao/leastsquares/impls/pounders/pounders.h
/petsc/src/tao/linesearch/impls/armijo/armijo.h
/petsc/src/tao/linesearch/impls/gpcglinesearch/gpcglinesearch.h
/petsc/src/tao/linesearch/impls/morethuente/morethuente.h
/petsc/src/tao/linesearch/impls/owarmijo/owarmijo.h
/petsc/src/tao/matrix/submatfree.h
/petsc/src/tao/pde_constrained/impls/lcl/lcl.h
/petsc/src/tao/quadratic/impls/bqpip/bqpipimpl.h
/petsc/src/tao/quadratic/impls/gpcg/gpcg.h
/petsc/src/tao/unconstrained/impls/bmrm/bmrm.h
/petsc/src/tao/unconstrained/impls/cg/taocg.h
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.h
/petsc/src/tao/unconstrained/impls/neldermead/neldermead.h
/petsc/src/tao/unconstrained/impls/nls/nlsimpl.h
/petsc/src/tao/unconstrained/impls/ntl/ntlimpl.h
/petsc/src/tao/unconstrained/impls/ntr/ntrimpl.h
/petsc/src/tao/unconstrained/impls/owlqn/owlqn.h
/petsc/src/ts/characteristic/impls/da/slda.h
/petsc/src/ts/impls/explicit/rk/mrk.h
/petsc/src/ts/impls/explicit/rk/rk.h
/petsc/src/ts/impls/implicit/glle/glle.h
/petsc/src/ts/impls/implicit/sundials/sundials.h
/petsc/src/ts/tutorials/advection-diffusion-reaction/reaction_diffusion.h
/petsc/src/ts/tutorials/network/pipe.h
/petsc/src/ts/tutorials/network/wash.h
/petsc/src/ts/tutorials/power_grid/ex3.h
/petsc/src/ts/utils/dmplexlandau/land_tensors.h
/petsc/src/vec/is/ao/aoimpl.h
/petsc/src/vec/is/is/impls/general/general.h
/petsc/src/vec/is/sf/impls/basic/allgather/sfallgather.h
/petsc/src/vec/is/sf/impls/basic/allgatherv/sfallgatherv.h
/petsc/src/vec/is/sf/impls/basic/gatherv/sfgatherv.h
/petsc/src/vec/is/sf/impls/basic/sfbasic.h
/petsc/src/vec/is/sf/impls/basic/sfpack.h
/petsc/src/vec/is/utils/isltog.h
/petsc/src/vec/pf/pfimpl.h
/petsc/src/vec/vec/impls/dvecimpl.h
/petsc/src/vec/vec/impls/hypre/vhyp.h
/petsc/src/vec/vec/impls/mpi/cupm/vecmpicupm.hpp
/petsc/src/vec/vec/impls/mpi/cupm/vecmpicupm_impl.hpp
/petsc/src/vec/vec/impls/mpi/pvecimpl.h
/petsc/src/vec/vec/impls/nest/vecnestimpl.h
/petsc/src/vec/vec/impls/seq/cupm/vecseqcupm.hpp
/petsc/src/vec/vec/impls/seq/cupm/vecseqcupm_impl.hpp
/petsc/src/vec/vec/impls/seq/ftn-kernels/faypx.h
/petsc/src/vec/vec/impls/seq/ftn-kernels/fmdot.h
/petsc/src/vec/vec/impls/seq/ftn-kernels/fnorm.h
/petsc/src/vec/vec/impls/seq/ftn-kernels/fwaxpy.h
/petsc/src/vec/vec/impls/seq/ftn-kernels/fxtimesy.h
/petsc/src/vec/vec/impls/seq/kokkos/veckokkosimpl.hpp
/petsc/src/vec/vec/impls/seq/seqviennacl/viennaclvecimpl.h
/petsc/src/vec/vec/utils/tagger/impls/andor.h
/petsc/src/vec/vec/utils/tagger/impls/simple.h
3ea9903617-Aug-2023 Jacob Faibussowitsch <jacob.fai@gmail.com>

Fix some malformed if !defined() header guards


/petsc/config/BuildSystem/config/packages/amgx.py
/petsc/config/BuildSystem/config/packages/hpddm.py
/petsc/doc/build_man_impls_links.py
/petsc/doc/build_man_index.py
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/petsc/include/petsc/private/bagimpl.h
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/petsc/include/petsc/private/kspimpl.h
/petsc/include/petsc/private/pcbjkokkosimpl.h
/petsc/include/petsc/private/veccupmimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscmat.h
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/cyclicgc.pxi
/petsc/src/binding/petsc4py/src/petsc4py/PETSc/dlpack.pxi
/petsc/src/dm/impls/forest/p4est/pforest.h
/petsc/src/dm/impls/plex/gmshlex.h
/petsc/src/ksp/ksp/impls/tcqmr/tcqmrimpl.h
/petsc/src/ksp/ksp/tutorials/ex43-solcx.h
/petsc/src/ksp/ksp/utils/lmvm/brdn/brdn.h
/petsc/src/ksp/ksp/utils/lmvm/diagbrdn/diagbrdn.h
/petsc/src/ksp/ksp/utils/lmvm/symbrdn/symbrdn.h
/petsc/src/ksp/ksp/utils/schurm/schurm.h
/petsc/src/ksp/pc/impls/fieldsplit/fieldsplit.c
/petsc/src/ksp/pc/impls/hpddm/pchpddm.cxx
/petsc/src/ksp/pc/impls/spai/petscspai.h
/petsc/src/mat/impls/aij/seq/aijmkl/aijmkl.h
/petsc/src/mat/impls/aij/seq/bas/spbas.h
/petsc/src/mat/impls/aij/seq/bas/spbas_cholesky.h
/petsc/src/mat/impls/aij/seq/crl/crl.h
/petsc/src/mat/impls/aij/seq/crl/ftn-kernels/fmultcrl.h
/petsc/src/mat/impls/aij/seq/ftn-kernels/fmult.h
/petsc/src/mat/impls/aij/seq/ftn-kernels/fmultadd.h
/petsc/src/mat/impls/aij/seq/ftn-kernels/frelax.h
/petsc/src/mat/impls/aij/seq/ftn-kernels/fsolve.h
/petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu
/petsc/src/mat/impls/baij/seq/baijmkl/baijmkl.h
/petsc/src/mat/impls/baij/seq/ftn-kernels/fsolvebaij.h
/petsc/src/mat/impls/dense/mpi/mpidense.h
/petsc/src/mat/impls/htool/htool.hpp
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/petsc/src/sys/classes/viewer/impls/ascii/asciiimpl.h
/petsc/src/sys/classes/viewer/impls/mathematica/mathematica.h
/petsc/src/sys/classes/viewer/impls/socket/socket.h
/petsc/src/sys/error/signal.c
handler/impls/default/logdefault.h
handler/impls/nested/lognested.h
/petsc/src/sys/objects/garbage.c
/petsc/src/sys/totalview/tv_data_display.h
/petsc/src/tao/bound/impls/bncg/bncg.h
/petsc/src/tao/matrix/submatfree.h
/petsc/src/ts/impls/explicit/rk/mrk.h
/petsc/src/ts/impls/explicit/rk/rk.h
/petsc/src/ts/tutorials/advection-diffusion-reaction/reaction_diffusion.h
/petsc/src/ts/tutorials/power_grid/ex3.h
/petsc/src/ts/utils/dmplexlandau/land_tensors.h
/petsc/src/vec/vec/impls/mpi/cupm/vecmpicupm_impl.hpp
/petsc/src/vec/vec/impls/seq/cupm/vecseqcupm.hpp
/petsc/src/vec/vec/impls/seq/cupm/vecseqcupm_impl.hpp
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/interface/vector.c
/petsc/src/vec/vec/utils/vinv.c
95b375eb19-Aug-2023 Satish Balay <balay@mcs.anl.gov>

Merge branch 'jczhang/2023-08-17/fix-log-view-gpu-time' into 'main'

No need to register a finalizer for log_view_gpu_time

See merge request petsc/petsc!6824


plog.c
/petsc/src/sys/objects/pinit.c
/petsc/src/sys/tests/ex71.c
/petsc/src/sys/tests/output/ex71_0.out
473903fc18-Aug-2023 Junchao Zhang <jczhang@mcs.anl.gov>

Sys: no need to register a finalizer for log_view_gpu_time

otherwise, PetscObjectRegisterDestroyAll() will change PetscLogGpuTimeFlag to false before PetscLogViewFromOptions(), causing "nan " in out

Sys: no need to register a finalizer for log_view_gpu_time

otherwise, PetscObjectRegisterDestroyAll() will change PetscLogGpuTimeFlag to false before PetscLogViewFromOptions(), causing "nan " in output.

show more ...


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0ba5dad918-Aug-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: use non-erroring behavior when default log handler is not running

The assumption is users would rather collect zero statistics than error
their program if they have hard-coded function ca

Profiling: use non-erroring behavior when default log handler is not running

The assumption is users would rather collect zero statistics than error
their program if they have hard-coded function calls to
PetscLogEventGetPerfInfo() or PetscLogStageGetPerfInfo() that assume the
default log handler is running.

show more ...


plog.c
1943a74918-Aug-2023 Toby Isaac <toby.isaac@gmail.com>

Profiling: fix non-existence check in PetscLogGetHandler()


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