interface - OpenGrok history log for /petsc/src/ts/interface

Revision	Date	Author	Comments (<<< Hide modified files) (Show modified files >>>)
d0c080ab	02-Apr-2021	Joseph Pusztay <josephpu@buffalo.edu>	TS examples for simple collision operators with PIC /petsc/.gitignore /petsc/.gitlab-ci.yml /petsc/.mailmap /petsc/LICENSE /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/exodusii.py /petsc/config/BuildSystem/config/packages/gmsh.py /petsc/config/BuildSystem/config/packages/mpi4py.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/PETSc/Configure.py /petsc/config/PETSc/options/libraryOptions.py /petsc/config/petsc_harness.sh /petsc/include/petsc/private/dmpleximpl.h /petsc/include/petsc/private/dmswarmimpl.h /petsc/include/petsc/private/matimpl.h /petsc/include/petsc/private/tsimpl.h /petsc/include/petscdmswarm.h /petsc/include/petsclandau.h /petsc/include/petscmat.h /petsc/include/petscsystypes.h /petsc/include/petscts.h /petsc/include/petscversion.h /petsc/include/petscviewer.h /petsc/lib/petsc/bin/maint/builddist /petsc/lib/petsc/bin/maint/rebuildtar /petsc/lib/petsc/bin/maint/update-docs.py /petsc/lib/petsc/bin/maint/xclude /petsc/lib/petsc/bin/petscmpiexec /petsc/makefile /petsc/setup.py /petsc/src/binding/petsc4py/CHANGES.rst /petsc/src/binding/petsc4py/DESCRIPTION.rst /petsc/src/binding/petsc4py/docs/index.rst /petsc/src/binding/petsc4py/docs/source/citing.rst /petsc/src/binding/petsc4py/docs/source/overview.rst /petsc/src/binding/petsc4py/src/PETSc/Mat.pyx /petsc/src/binding/petsc4py/src/PETSc/petscmat.pxi /petsc/src/binding/petsc4py/src/__init__.py /petsc/src/binding/petsc4py/test/test_dmda.py /petsc/src/binding/petsc4py/test/test_mat_py.py /petsc/src/dm/dt/dualspace/interface/dualspace.c /petsc/src/dm/dt/fe/interface/fe.c /petsc/src/dm/dt/space/interface/space.c /petsc/src/dm/impls/plex/plexdistribute.c /petsc/src/dm/impls/plex/plexfem.c /petsc/src/dm/impls/plex/plexnatural.c /petsc/src/dm/impls/plex/plexrefine.c /petsc/src/dm/impls/swarm/data_bucket.c /petsc/src/dm/impls/swarm/swarm.c /petsc/src/dm/impls/swarm/tests/ex3.c 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/petsc/src/mat/impls/aij/mpi/mumps/mumps.c /petsc/src/mat/impls/aij/mpi/pastix/pastix.c /petsc/src/mat/impls/aij/mpi/strumpack/strumpack.c /petsc/src/mat/impls/aij/seq/aijfact.c /petsc/src/mat/impls/aij/seq/bas/basfactor.c /petsc/src/mat/impls/aij/seq/cholmod/aijcholmod.c /petsc/src/mat/impls/aij/seq/essl/essl.c /petsc/src/mat/impls/aij/seq/klu/klu.c /petsc/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx /petsc/src/mat/impls/aij/seq/seqcusparse/aijcusparse.cu /petsc/src/mat/impls/aij/seq/seqcusparse/cusparsematimpl.h /petsc/src/mat/impls/aij/seq/umfpack/umfpack.c /petsc/src/mat/impls/baij/seq/baijfact.c /petsc/src/mat/impls/dense/seq/cuda/densecuda.cu /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/impls/sbaij/seq/cholmod/sbaijcholmod.c /petsc/src/mat/impls/sbaij/seq/sbaij.c /petsc/src/mat/interface/matrix.c /petsc/src/mat/order/sorder.c /petsc/src/mat/order/spnd.c /petsc/src/snes/tutorials/ex19.c /petsc/src/sys/classes/draw/utils/hists.c /petsc/src/sys/classes/viewer/impls/adios/adios.c /petsc/src/sys/classes/viewer/impls/adios2/adios2.c /petsc/src/sys/classes/viewer/impls/ascii/filev.c /petsc/src/sys/classes/viewer/impls/binary/binv.c /petsc/src/sys/classes/viewer/impls/hdf5/hdf5v.c /petsc/src/sys/classes/viewer/impls/matlab/vmatlab.c /petsc/src/sys/classes/viewer/impls/vtk/vtkv.c /petsc/src/sys/classes/viewer/impls/vu/petscvu.c /petsc/src/sys/logging/xmllogevent.c /petsc/src/sys/tests/ex55.py /petsc/src/sys/tests/makefile /petsc/src/sys/tests/output/ex55_1.testout makefile ts.c tsmon.c /petsc/src/ts/tests/ex27.c /petsc/src/ts/tests/ex28.c /petsc/src/ts/tests/output/ex27_midpoint.out /petsc/src/ts/tests/output/ex28_1.out /petsc/src/ts/tests/output/ex28_2.out /petsc/src/ts/utils/dmplexlandau/plexland.c /petsc/src/vec/is/sf/impls/basic/neighbor/sfneighbor.c /petsc/src/vec/is/sf/interface/vscat.c
1fb7b255	29-Mar-2021	Junchao Zhang <jczhang@mcs.anl.gov>	Fortran: re-init destroyed petsc objects so that they are different from null objects Reported-by: Jose E. Roman <jroman@dsic.upv.es> /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/compile/HIP.py /petsc/config/BuildSystem/config/compilerFlags.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/compilersFortran.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/NVSHMEM.py /petsc/config/BuildSystem/config/packages/OpenMPI.py /petsc/config/BuildSystem/config/packages/PTScotch.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/bamg.py /petsc/config/BuildSystem/config/packages/blis.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/hip.py /petsc/config/BuildSystem/config/packages/hpddm.py /petsc/config/BuildSystem/config/packages/kokkos-kernels.py 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e808b789	08-Mar-2021	Patrick Sanan <patrick.sanan@gmail.com>	TSSUNDIALS: update PETSC_HAVE_SUNDIALS to PETSC_HAVE_SUNDIALS2 /petsc/.travis.yml /petsc/CONTRIBUTING /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilersFortran.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/BlasLapack.py /petsc/config/BuildSystem/config/packages/MFEM.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/hpddm.py /petsc/config/BuildSystem/config/packages/magma.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/examples/arch-alcfci-theta-intel-opt.py /petsc/config/examples/arch-ci-freebsd-cxx-cmplx-64idx-dbg.py /petsc/config/examples/arch-ci-linux-pkgs-64idx.py /petsc/config/examples/arch-cray-xc40-knl-opt.py /petsc/include/petsc/mpiuni/mpif.h /petsc/include/petsc/private/kspimpl.h /petsc/include/petsc/private/matimpl.h /petsc/include/petsc/private/pcmgimpl.h 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f6b722a5	22-Feb-2021	Satish Balay <balay@mcs.anl.gov>	Merge remote-tracking branch 'origin/release' /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/ctetgen.py /petsc/config/BuildSystem/config/packages/hpddm.py /petsc/config/BuildSystem/config/packages/hypre.py /petsc/config/BuildSystem/config/packages/yaml.py /petsc/include/petsc/private/kspimpl.h /petsc/include/petsc/private/pcasmimpl.h /petsc/include/petsc/private/pcmgimpl.h /petsc/include/petsc/private/petschpddm.h /petsc/include/petscdm.h /petsc/include/petscksp.h /petsc/include/petscoptions.h /petsc/include/petscpc.h /petsc/include/petscsnes.h /petsc/include/petscviewer.h /petsc/lib/petsc/conf/rules /petsc/src/dm/dt/fe/interface/ftn-custom/zfef.c /petsc/src/dm/dt/fv/interface/ftn-custom/zfvf.c /petsc/src/dm/dt/interface/ftn-custom/zdsf.c /petsc/src/dm/f90-mod/petscdmplex.h90 /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/plex/plexvtu.c /petsc/src/dm/interface/dm.c 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b14c0cba	18-Feb-2021	Blaise Bourdin <bourdin@lsu.edu>	petscviewer: fix the fortran bindings of XXXViewFromOptions when called with obj=PETSC_NULL_XXX /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/include/petsc/private/petschpddm.h /petsc/src/dm/dt/fe/interface/ftn-custom/zfef.c /petsc/src/dm/dt/fv/interface/ftn-custom/zfvf.c /petsc/src/dm/dt/interface/ftn-custom/zdsf.c /petsc/src/dm/impls/plex/plexvtu.c /petsc/src/dm/interface/ftn-custom/zdmf.c /petsc/src/dm/partitioner/interface/ftn-custom/zpartitioner.c /petsc/src/ksp/ksp/interface/ftn-custom/zitcreatef.c /petsc/src/ksp/pc/impls/bddc/bddc.c /petsc/src/ksp/pc/impls/hpddm/hpddm.cxx /petsc/src/ksp/pc/interface/ftn-custom/zpreconf.c /petsc/src/mat/coarsen/ftn-custom/zcoarsenf.c /petsc/src/mat/interface/ftn-custom/zmatrixf.c /petsc/src/mat/partition/ftn-custom/zpartitionf.c /petsc/src/snes/interface/ftn-custom/zsnesf.c /petsc/src/sys/classes/draw/interface/ftn-custom/zdrawregf.c /petsc/src/sys/classes/random/interface/ftn-custom/zrandomf.c /petsc/src/sys/fileio/sysio.c /petsc/src/sys/objects/ftn-custom/zoptionsf.c /petsc/src/sys/objects/options.c /petsc/src/tao/interface/ftn-custom/ztaosolverf.c /petsc/src/tao/linesearch/interface/ftn-custom/ztaolinesearchf.c ftn-custom/ztsf.c /petsc/src/ts/trajectory/interface/ftn-custom/ztrajf.c /petsc/src/vec/is/ao/interface/ftn-custom/zaof.c /petsc/src/vec/is/is/interface/ftn-custom/zindexf.c /petsc/src/vec/is/is/utils/ftn-custom/ziscoloringf.c /petsc/src/vec/is/section/interface/ftn-custom/zsectionf.c /petsc/src/vec/is/sf/interface/ftn-custom/zsf.c /petsc/src/vec/is/utils/ftn-custom/zisltogf.c /petsc/src/vec/pf/interface/ftn-custom/zpff.c /petsc/src/vec/vec/impls/nest/vecnest.c /petsc/src/vec/vec/interface/ftn-custom/zvectorf.c
95b99692	16-Feb-2021	Satish Balay <balay@mcs.anl.gov>	Merge remote-tracking branch 'origin/release' /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/RDict.py /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/ColPack.py /petsc/config/BuildSystem/config/packages/MFEM.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MPICH.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/SuperLU.py /petsc/config/BuildSystem/config/packages/SuperLU_DIST.py /petsc/config/BuildSystem/config/packages/Trilinos.py /petsc/config/BuildSystem/config/packages/alquimia.py /petsc/config/BuildSystem/config/packages/blis.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/eigen.py /petsc/config/BuildSystem/config/packages/elemental.py 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1628793f	11-Feb-2021	Satish Balay <balay@mcs.anl.gov>	docs: fix typo Reported-by: Greg Vernon <greg@coreform.com> /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/petsc4py.py /petsc/config/BuildSystem/config/packages/python.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/BuildSystem/config/setCompilers.py /petsc/config/BuildSystem/nargs.py /petsc/config/configure.py /petsc/config/query_tests.py /petsc/config/report_tests.py /petsc/config/testparse.py /petsc/gmakefile /petsc/gmakefile.test /petsc/include/petscksp.h /petsc/include/petscsys.h /petsc/include/petscversion.h /petsc/lib/petsc/conf/rules /petsc/src/binding/petsc4py/.gitignore /petsc/src/binding/petsc4py/CHANGES.rst /petsc/src/binding/petsc4py/LICENSE.rst /petsc/src/binding/petsc4py/conf/cythonize.py /petsc/src/binding/petsc4py/conf/cythonize.sh /petsc/src/binding/petsc4py/docs/source/conf.py /petsc/src/binding/petsc4py/makefile /petsc/src/binding/petsc4py/setup.py /petsc/src/binding/petsc4py/src/__init__.py /petsc/src/docs/sphinx_docs/developers/testing.rst /petsc/src/docs/sphinx_docs/manual/snes.rst /petsc/src/docs/website/documentation/faq.html /petsc/src/docs/website/download/index.html /petsc/src/mat/impls/aij/mpi/fdmpiaij.c /petsc/src/mat/impls/baij/seq/baij.c /petsc/src/mat/impls/baij/seq/baij.h /petsc/src/mat/impls/baij/seq/baijfact81.c /petsc/src/mat/impls/dense/mpi/mpidense.c /petsc/src/mat/impls/sbaij/seq/sbaij.c /petsc/src/mat/interface/matrix.c /petsc/src/mat/matfd/fdmatrix.c /petsc/src/sys/fileio/mprint.c /petsc/src/sys/objects/aoptions.c /petsc/src/sys/objects/options.c /petsc/src/sys/python/pythonsys.c /petsc/src/sys/tests/options/ex55.c /petsc/src/sys/tests/options/output/ex55_6a.out /petsc/src/sys/tests/options/output/ex55_6b.out /petsc/src/sys/tests/options/output/ex55_6c.out /petsc/src/sys/tests/options/rc_help /petsc/src/sys/tests/options/rc_help_intro /petsc/src/sys/tests/options/rc_version ts.c /petsc/src/ts/tutorials/ex25.c /petsc/src/ts/utils/dmlocalts.c /petsc/src/ts/utils/dmplexlandau/plexland.c
aee7a9fb	13-Jan-2021	Matthew G. Knepley <knepley@gmail.com>	TS: Can now cancel monitors and solution views use TS prefix /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/packages/PARTY.py /petsc/config/BuildSystem/config/packages/X.py /petsc/config/BuildSystem/config/packages/Zoltan.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/libjpeg.py /petsc/config/BuildSystem/config/packages/libpng.py /petsc/config/BuildSystem/config/packages/ml.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/BuildSystem/config/packages/szlib.py /petsc/config/BuildSystem/config/packages/zlib.py /petsc/config/PETSc/Configure.py /petsc/config/configure.py /petsc/config/petsc_harness.sh /petsc/gmakefile.test /petsc/include/petsc/finclude/petscmat.h /petsc/include/petsc/private/taoimpl.h /petsc/include/petsccublas.h /petsc/include/petscdmswarm.h /petsc/include/petscds.h /petsc/include/petscerror.h /petsc/include/petscis.h /petsc/include/petsclandau.h /petsc/include/petscmat.h /petsc/include/petscsf.h /petsc/include/petsctao.h /petsc/include/petscts.h /petsc/include/petscversion.h /petsc/lib/petsc/conf/variables /petsc/src/binding/petsc4py/demo/ode/bouncing_ball.py /petsc/src/binding/petsc4py/src/PETSc/TS.pyx /petsc/src/binding/petsc4py/src/PETSc/petscsct.pxi /petsc/src/binding/petsc4py/src/PETSc/petscts.pxi /petsc/src/binding/petsc4py/src/include/arraynpy.pxi /petsc/src/binding/petsc4py/src/include/petsc4py/numpy.h /petsc/src/dm/dt/interface/dtds.c /petsc/src/dm/impls/da/grvtk.c /petsc/src/dm/impls/plex/plex.c /petsc/src/dm/impls/swarm/swarm.c /petsc/src/dm/interface/dm.c /petsc/src/dm/interface/dmi.c /petsc/src/docs/tao_tex/manual/part3.tex /petsc/src/docs/tex/petsc.bib /petsc/src/docs/tex/petscapp.bib /petsc/src/docs/website/documentation/changes/dev.html /petsc/src/docs/website/download/index.html /petsc/src/ksp/ksp/impls/cg/cgls.c /petsc/src/ksp/ksp/impls/fcg/pipefcg/pipefcg.c /petsc/src/ksp/ksp/impls/gcr/pipegcr/pipegcr.c /petsc/src/ksp/ksp/impls/gmres/pipefgmres/pipefgmres.c /petsc/src/ksp/ksp/impls/ibcgs/ibcgs.c /petsc/src/ksp/ksp/impls/tsirm/tsirm.c /petsc/src/ksp/ksp/tutorials/output/ex7_gamg_kokkos_nsize-1.out /petsc/src/ksp/ksp/tutorials/output/ex7_gamg_kokkos_nsize-2.out /petsc/src/mat/impls/aij/seq/kokkos/aijkok.kokkos.cxx /petsc/src/mat/impls/aij/seq/seqcusparse/cusparsematimpl.h /petsc/src/mat/interface/dlregismat.c /petsc/src/mat/order/spectral.c /petsc/src/mat/tests/ex70.c /petsc/src/snes/interface/snesut.c /petsc/src/sys/classes/draw/utils/image.c /petsc/src/sys/objects/options.c /petsc/src/sys/python/pythonsys.c /petsc/src/sys/tests/options/ex55.c /petsc/src/sys/tests/options/output/ex55_6a.out /petsc/src/sys/tests/options/output/ex55_6b.out /petsc/src/sys/tests/options/output/ex55_6c.out /petsc/src/sys/tests/options/rc_help /petsc/src/sys/tests/options/rc_help_intro /petsc/src/sys/tests/options/rc_version /petsc/src/tao/bound/impls/bncg/bncg.c /petsc/src/tao/bound/impls/bncg/bncg.h /petsc/src/tao/bound/impls/bnk/bnk.c /petsc/src/tao/bound/impls/bnk/bnls.c /petsc/src/tao/bound/impls/bqnk/bqnk.c /petsc/src/tao/bound/impls/bqnk/bqnk.h /petsc/src/tao/bound/impls/bqnk/bqnkls.c /petsc/src/tao/bound/impls/bqnk/bqnktl.c /petsc/src/tao/bound/impls/bqnk/bqnktr.c /petsc/src/tao/bound/impls/bqnls/bqnls.c /petsc/src/tao/interface/taosolver.c /petsc/src/tao/unconstrained/tutorials/makefile /petsc/src/tao/unconstrained/tutorials/output/rosenbrock3_1.out /petsc/src/tao/unconstrained/tutorials/rosenbrock3.c /petsc/src/ts/event/tsevent.c ts.c /petsc/src/ts/utils/dmplexlandau/cuda/landaucu.cu /petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx /petsc/src/ts/utils/dmplexlandau/plexland.c /petsc/src/ts/utils/dmplexlandau/tutorials/ex1.c /petsc/src/ts/utils/dmplexlandau/tutorials/ex1f90.F90 /petsc/src/ts/utils/dmplexlandau/tutorials/ex2.c /petsc/src/ts/utils/dmplexlandau/tutorials/makefile /petsc/src/ts/utils/dmplexlandau/tutorials/output/ex1_0.out /petsc/src/ts/utils/dmplexlandau/tutorials/output/ex1f90_0.out /petsc/src/ts/utils/dmplexlandau/tutorials/output/ex2_0.out /petsc/src/ts/utils/dmplexlandau/tutorials/output/ex2_kokkos.out /petsc/src/vec/is/sf/impls/basic/allgather/sfallgather.c /petsc/src/vec/is/sf/impls/basic/allgatherv/sfallgatherv.c /petsc/src/vec/is/sf/impls/basic/hip/sfhip.hip.cpp /petsc/src/vec/is/sf/impls/basic/sfpack.c /petsc/src/vec/is/sf/impls/window/sfwindow.c /petsc/src/vec/is/sf/tests/ex2.c /petsc/src/vec/is/sf/tests/ex8.c /petsc/src/vec/is/sf/utils/sfutils.c /petsc/src/vec/is/utils/pmap.c /petsc/src/vec/vec/impls/mpi/mpihip/mpihip.hip.cpp /petsc/src/vec/vec/interface/rvector.c /petsc/src/vec/vec/tutorials/ex1.c /petsc/src/vec/vec/tutorials/performance.c
a66b5171	05-Jan-2021	Satish Balay <balay@mcs.anl.gov>	Merge remote-tracking branch 'origin/release' /petsc/.gitlab/CODEOWNERS /petsc/config/BuildSystem/config/packages/kokkos-kernels.py /petsc/include/petsc/private/matimpl.h /petsc/include/petsc/private/pcgamgimpl.h /petsc/include/petsc/private/petscimpl.h /petsc/include/petscerror.h /petsc/include/petscis.h /petsc/include/petsclog.h /petsc/include/petscmat.h /petsc/include/petscsystypes.h /petsc/lib/petsc/bin/petscdiff /petsc/lib/petsc/conf/rules /petsc/share/petsc/matlab/@PetscOpenSocket/read.m /petsc/share/petsc/matlab/@PetscOpenSocket/write.m /petsc/share/petsc/matlab/PetscBinaryRead.m /petsc/share/petsc/matlab/launch.m /petsc/src/binding/petsc4py/conf/cythonize.py /petsc/src/binding/petsc4py/conf/cythonize.sh /petsc/src/binding/petsc4py/makefile /petsc/src/binding/petsc4py/setup.py /petsc/src/dm/dt/fe/impls/basic/febasic.c /petsc/src/dm/dt/fe/impls/opencl/feopencl.c /petsc/src/dm/impls/composite/packm.c /petsc/src/dm/tests/ex12.m 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595c91d4	27-Dec-2020	Barry Smith <bsmith@mcs.anl.gov>	Add to manual pages the use of call XXXView(x,0) from the debugger Commit-type: documentation /spend 5m Development Tools: Vim, Emacs, Eclipse /petsc/.gitlab/CODEOWNERS /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/MUMPS.py /petsc/config/BuildSystem/config/packages/SuiteSparse.py /petsc/config/BuildSystem/config/packages/hpddm.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/examples/arch-ci-linux-intel-cmplx.py /petsc/config/examples/arch-ci-osx-cxx-pkgs-opt.py /petsc/config/petsc_harness.sh /petsc/config/query_tests.py /petsc/gmakefile.test /petsc/include/petsc/finclude/petscmat.h /petsc/include/petsc/finclude/petsctao.h /petsc/include/petsc/private/petscscalapack.h /petsc/include/petscdmda.h /petsc/include/petscdmplex.h /petsc/include/petscds.h /petsc/include/petscerror.h /petsc/include/petscksp.h /petsc/include/petscmat.h /petsc/include/petscmatcoarsen.h 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ffc4695b	08-Oct-2020	Barry Smith <bsmith@mcs.anl.gov>	Convert MPI error type to PETSc error with string message for all MPI calls Now PETSc examples will ONLY return PETSc error codes and never MPI error codes directly so we can understand and post-pro Convert MPI error type to PETSc error with string message for all MPI calls Now PETSc examples will ONLY return PETSc error codes and never MPI error codes directly so we can understand and post-process their errors better. The test harness will now automatically retry tests that fail with MPI, this may help with Intel MPI that produces seemingly random failures. Commit-type: error-checking /spend 30m show more ... /petsc/config/petsc_harness.sh /petsc/gmakefile.test /petsc/include/petsc/private/kspimpl.h /petsc/include/petsc/private/matimpl.h /petsc/include/petsc/private/pcmgimpl.h /petsc/include/petsc/private/petscimpl.h /petsc/include/petscaijdevice.h /petsc/include/petscdmpatch.h /petsc/include/petscdraw.h /petsc/include/petscerror.h /petsc/include/petscis.h /petsc/include/petscksp.h /petsc/include/petsclandau.h /petsc/include/petsclog.h /petsc/include/petscmat.h /petsc/include/petscpc.h /petsc/include/petscsys.h /petsc/lib/petsc/bin/maint/check-ci-settings.sh /petsc/lib/petsc/bin/maint/check-merge-branch.sh /petsc/lib/petsc/bin/petscdiff /petsc/lib/petsc/conf/rules /petsc/src/benchmarks/streams/CUDAVersion.cu /petsc/src/benchmarks/streams/SSEVersion.c /petsc/src/binding/petsc4py/src/PETSc/KSP.pyx /petsc/src/binding/petsc4py/src/PETSc/PC.pyx /petsc/src/binding/petsc4py/src/PETSc/Sys.pyx /petsc/src/binding/petsc4py/src/PETSc/petscpc.pxi 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a6ab3590	08-Sep-2020	Barry Smith <bsmith@mcs.anl.gov>	TSView now shows the number of i and rhs function and Jacobian evaluations Commit-type: feature /spend 30m Reported-by: Ed Bueler Thanks-to: Jed Brown jed@jedbrown.org /petsc/include/petsc/private/tsimpl.h /petsc/src/mat/utils/axpy.c ts.c /petsc/src/ts/tests/output/ex4_8.out /petsc/src/ts/tests/output/ex6_1.out /petsc/src/ts/tests/output/ex6_1_alt.out /petsc/src/ts/tests/output/ex7_1.out /petsc/src/ts/tests/output/ex7_1_alt.out /petsc/src/ts/tests/output/ex8_1.out /petsc/src/ts/tests/output/ex8_2.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex1_1.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex2_1.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex2_1_alt.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex2_1_alt_2.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex2_1_alt_3.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex2_1_alt_4.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex3_1.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex3_1_alt.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex3_1_alt_2.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex3_1_alt_3.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex3_1_alt_4.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex3_1_alt_5.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex4_1.out /petsc/src/ts/tutorials/advection-diffusion-reaction/output/ex5_1.out /petsc/src/ts/tutorials/output/ex18_adv_1.out /petsc/src/ts/tutorials/output/ex18_adv_3.out /petsc/src/ts/tutorials/output/ex18_adv_3_ex.out /petsc/src/ts/tutorials/output/ex19_pi42.out /petsc/src/ts/tutorials/output/ex3_1.out /petsc/src/ts/tutorials/output/ex3_2.out /petsc/src/ts/tutorials/output/ex3_3.out /petsc/src/ts/tutorials/output/ex3_4.out /petsc/src/ts/tutorials/output/ex3_5.out /petsc/src/ts/tutorials/output/ex3_fischer_guess.out /petsc/src/ts/tutorials/output/ex3_fischer_guess_2.out /petsc/src/ts/tutorials/output/ex3_pod_guess.out /petsc/src/ts/tutorials/output/ex3_pod_guess_Ainner.out /petsc/src/ts/tutorials/output/ex43_a.out /petsc/src/ts/tutorials/output/ex4_1.out /petsc/src/ts/tutorials/output/ex4_2.out /petsc/src/ts/tutorials/output/ex4_3.out /petsc/src/ts/tutorials/output/ex4_4.out /petsc/src/ts/tutorials/output/ex50_3.out /petsc/src/ts/tutorials/output/ex50_4.out /petsc/src/ts/tutorials/output/ex5_1.out /petsc/src/ts/tutorials/output/ex5_nox.out /petsc/src/ts/tutorials/output/ex6_1.out
d60b7d5c	17-Sep-2020	Barry Smith <bsmith@mcs.anl.gov>	Introduce UNKNOW_NONZERO_PATTERN for MatAXPY() make it the default for TS when using both IJacobian and RHSJacobian Provide TSSetMatStructure() to allows users to indicate the nonzero structure rela Introduce UNKNOW_NONZERO_PATTERN for MatAXPY() make it the default for TS when using both IJacobian and RHSJacobian Provide TSSetMatStructure() to allows users to indicate the nonzero structure relationship between the RHS and I Jacobian When the RHS Jacobian matrix is not set and is obtained with a MatDuplicate() from the I Jacobian set the flag to SAME_NONZERO_PATTERN Add MatStructures and update SLEPc to compile with no warning message after the new MatStructure MAT_UNKNOWN_PATTERN was introduced Commit-type: optimization /spend 25m Thanks-to: Ed Buler /spend 35m Update SLEPc branch to support new enum type show more ... /petsc/.gitignore /petsc/.gitlab-ci.yml /petsc/.gitlab/CODEOWNERS /petsc/CONTRIBUTING /petsc/LICENSE 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b458e8f1	05-Nov-2020	Jose E. Roman <jroman@dsic.upv.es>	Fix warnings in NVIDIA compilers (formerly PGI): unreachable statement /petsc/.gitignore /petsc/.gitlab-ci.yml /petsc/.gitlab/CODEOWNERS /petsc/.travis.yml /petsc/CONTRIBUTING /petsc/LICENSE /petsc/config/BuildSystem/config/compilerOptions.py /petsc/config/BuildSystem/config/compilers.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/ADOLC.py /petsc/config/BuildSystem/config/packages/Chaco.py /petsc/config/BuildSystem/config/packages/ColPack.py /petsc/config/BuildSystem/config/packages/Triangle.py /petsc/config/BuildSystem/config/packages/bamg.py /petsc/config/BuildSystem/config/packages/cuda.py /petsc/config/BuildSystem/config/packages/kokkos-kernels.py /petsc/config/BuildSystem/config/packages/kokkos.py /petsc/config/BuildSystem/config/packages/med.py /petsc/config/BuildSystem/config/packages/revolve.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/BuildSystem/config/setCompilers.py 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9265a0a7	28-Sep-2020	Satish Balay <balay@mcs.anl.gov>	Merge branch 'danfinn/feature-ts-discrete-gradients' into 'master' TS: Adding discrete gradients method. See merge request petsc/petsc!2835 /petsc/include/petscts.h /petsc/src/dm/impls/swarm/tests/ex4.c /petsc/src/dm/impls/swarm/tests/output/ex4_1.out /petsc/src/dm/impls/swarm/tests/output/ex4_2.out /petsc/src/dm/impls/swarm/tests/output/ex4_3.out /petsc/src/dm/impls/swarm/tests/output/ex4_4.out /petsc/src/dm/impls/swarm/tests/output/ex4_5.out /petsc/src/dm/impls/swarm/tests/output/ex4_6.out /petsc/src/ts/impls/implicit/discgrad/makefile /petsc/src/ts/impls/implicit/discgrad/tsdiscgrad.c /petsc/src/ts/impls/implicit/makefile tsregall.c
b9588c04	28-Sep-2020	Satish Balay <balay@mcs.anl.gov>	Merge branch 'hongzh/2020-09-05/fix-computejacobian' into 'master' Reworked: Move TS shift processing from TSComputeRHSJacobian See merge request petsc/petsc!3237 /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/packages/ADIOS2.py /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/adblaslapack.py /petsc/config/BuildSystem/config/packages/googletest.py /petsc/config/BuildSystem/config/packages/kokkos-kernels.py /petsc/config/BuildSystem/config/packages/kokkos.py /petsc/config/BuildSystem/config/packages/libmesh.py /petsc/config/BuildSystem/config/packages/moose.py /petsc/config/BuildSystem/config/packages/radau5.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/config/BuildSystem/config/packages/thrust.py /petsc/config/examples/arch-ci-linux-cuda-double.py /petsc/config/petsc_harness.sh /petsc/include/petsc/private/kernels/blockinvert.h /petsc/include/petsc/private/matimpl.h 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40be0ff1	29-Aug-2019	Matthew G. Knepley <knepley@gmail.com>	TS: Added new discrete gradients TS - Added accessors for Discrete Gradient formulation - Registered TSDISCGRAD /petsc/config/BuildSystem/config/packages/MPI.py /petsc/config/BuildSystem/config/packages/slepc.py /petsc/include/petsc/private/kernels/blockinvert.h /petsc/include/petscsys.h /petsc/include/petscts.h /petsc/lib/petsc/bin/maint/builddist /petsc/lib/petsc/conf/test /petsc/lib/petsc/conf/variables /petsc/makefile /petsc/src/dm/impls/swarm/tests/ex4.c /petsc/src/dm/impls/swarm/tests/output/ex4_1.out /petsc/src/dm/impls/swarm/tests/output/ex4_2.out /petsc/src/dm/impls/swarm/tests/output/ex4_3.out /petsc/src/dm/impls/swarm/tests/output/ex4_4.out /petsc/src/dm/impls/swarm/tests/output/ex4_5.out /petsc/src/dm/impls/swarm/tests/output/ex4_6.out /petsc/src/dm/interface/dm.c /petsc/src/dm/partitioner/tests/ex33.c /petsc/src/docs/sphinx_docs/Makefile /petsc/src/docs/sphinx_docs/conf.py /petsc/src/docs/sphinx_docs/ext/html5_petsc.py /petsc/src/docs/sphinx_docs/manual/anl_tech_report/first.inc /petsc/src/docs/sphinx_docs/manual/getting_started.rst /petsc/src/docs/sphinx_docs/manual/index.rst /petsc/src/docs/sphinx_docs/manual/profiling.rst /petsc/src/docs/sphinx_docs/manual/tests.rst /petsc/src/docs/sphinx_docs/manual/ts.rst /petsc/src/docs/tex/petscapp.bib /petsc/src/docs/website/dmnetwork/publications.html /petsc/src/docs/website/download/index.html /petsc/src/ksp/f90-mod/petscksp.h90 /petsc/src/ksp/ksp/impls/gmres/agmres/agmres.c /petsc/src/ksp/ksp/impls/gmres/agmres/agmresleja.c /petsc/src/ksp/ksp/impls/gmres/dgmres/dgmres.c /petsc/src/ksp/ksp/impls/gmres/gmres.c /petsc/src/ksp/pc/impls/asm/ftn-custom/zasmf.c /petsc/src/ksp/pc/impls/gasm/ftn-custom/zgasmf.c /petsc/src/mat/impls/aij/mpi/mpiaij.c /petsc/src/mat/impls/aij/seq/aij.c /petsc/src/mat/impls/baij/mpi/mpibaij.c /petsc/src/mat/impls/dense/mpi/mpidense.c /petsc/src/mat/impls/dense/seq/dense.c /petsc/src/mat/interface/matrix.c /petsc/src/mat/order/spectral.c /petsc/src/mat/tests/ex114.c /petsc/src/mat/tests/output/ex114.out /petsc/src/mat/tests/output/ex114_3.out /petsc/src/mat/tests/output/ex114_4.out /petsc/src/mat/tests/output/ex114_5.out /petsc/src/mat/tests/output/ex114_6.out /petsc/src/mat/tests/output/ex114_7.out /petsc/src/mat/tests/output/ex114_8.out /petsc/src/snes/interface/snesut.c /petsc/src/sys/error/signal.c /petsc/src/sys/memory/mtr.c /petsc/src/ts/adapt/impls/basic/adaptbasic.c /petsc/src/ts/adapt/impls/dsp/adaptdsp.c /petsc/src/ts/adapt/impls/glee/adaptglee.c /petsc/src/ts/impls/implicit/discgrad/makefile /petsc/src/ts/impls/implicit/discgrad/tsdiscgrad.c /petsc/src/ts/impls/implicit/makefile tsregall.c /petsc/src/ts/utils/dmnetworkts.c /petsc/src/vec/is/sf/interface/sf.c /petsc/src/vec/vec/impls/mpi/pvec2.c /petsc/src/vec/vec/impls/seq/bvec1.c /petsc/src/vec/vec/impls/seq/bvec2.c /petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
03c97d52	25-Sep-2020	Hong Zhang <hongzhang@anl.gov>	Add safeguards in TSRecoverRHSJacobian ts.c
34d322a1	23-Sep-2020	Hong Zhang <hongzhang@anl.gov>	Shift B matrix if not same as A ts.c
ae692cf2	08-Jul-2020	Hong Zhang <hongzhang@anl.gov>	Error out when users call TSComputeRHSJacobian on a shifted matrix ts.c
cfa8a9a2	07-Jul-2020	Hong Zhang <hongzhang@anl.gov>	Use TSRecoverRHSJacobian to avoid code duplication Funded-by: Project: FASTMath adjoint Time: 2.0 hours Reported-by: Thanks-to: ts.c
097a96a2	17-May-2019	Hong Zhang <hongzhang@anl.gov>	Support smart shifting for TSComputeRHSJacobianConstant Since the SNES Jacobian matrices and the TS Jacobian matrices are different, we can safely shift the SNES Jacobians. The TS Jacobian is used o Support smart shifting for TSComputeRHSJacobianConstant Since the SNES Jacobian matrices and the TS Jacobian matrices are different, we can safely shift the SNES Jacobians. The TS Jacobian is used only for generating RHS (u'=A*u). Funded-by: Project: FASTMath adjoint Time: 0.5 hours Reported-by: Thanks-to: show more ... ts.c
f23ba4b3	07-Jul-2020	Hong Zhang <hongzhang@anl.gov>	No need to set reuse flag for TSComputeRHSJacobianConstant ts.c /petsc/src/ts/tests/ex24.c /petsc/src/ts/tests/output/ex24_1.out
2663174e	07-Jul-2020	Hong Zhang <hongzhang@anl.gov>	Improve handling of the shift and scale factors in TSComputeRHSJacobian - TSComputeRHSJacobian does not need to shift or unshift the Jacobian matrix; logically it should be TSComputeIJacobian's resp Improve handling of the shift and scale factors in TSComputeRHSJacobian - TSComputeRHSJacobian does not need to shift or unshift the Jacobian matrix; logically it should be TSComputeIJacobian's responsibility. Funded-by: Project: FASTMath adjoint Time: 4.0 hours Reported-by: Thanks-to: show more ... ts.c
e8b1e424	07-Jul-2020	Hong Zhang <hongzhang@anl.gov>	Improve handling of the shift and scale factors in TSComputeIJacobian - Unshifting/rescaling the old matrix and then applying a new shift can be done with a single shift for better performance Fund Improve handling of the shift and scale factors in TSComputeIJacobian - Unshifting/rescaling the old matrix and then applying a new shift can be done with a single shift for better performance Funded-by: Project: FASTMath adjoint Time: 4.0 hours Reported-by: Thanks-to: show more ... /petsc/.gitlab-ci.yml /petsc/config/BuildSystem/config/base.py /petsc/config/BuildSystem/config/framework.py /petsc/config/BuildSystem/config/libraries.py /petsc/config/BuildSystem/config/package.py /petsc/config/BuildSystem/config/packages/ADIOS.py /petsc/config/BuildSystem/config/packages/AMReX.py /petsc/config/BuildSystem/config/packages/Chaco.py /petsc/config/BuildSystem/config/packages/Chombo.py /petsc/config/BuildSystem/config/packages/GLVis.py 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