History log of /petsc/src/ts/interface/ (Results 426 – 450 of 1476)
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220f922206-Mar-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'hongzh/update-ts-adjoint-api' [PR #870]

* hongzh/update-ts-adjoint-api:
Reorganizes TSAdjoint code.
Deprecates TSAdjointSetRHSJacobian() TSAdjointComputeDRDP() TSAdjointComputeDRDY()


/petsc/include/petsc/private/tsimpl.h
/petsc/include/petscts.h
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/ts/examples/tutorials/ex16adj.c
/petsc/src/ts/examples/tutorials/ex16opt_p.c
/petsc/src/ts/examples/tutorials/ex20adj.c
/petsc/src/ts/examples/tutorials/ex20fwd.c
/petsc/src/ts/examples/tutorials/ex20opt_p.c
/petsc/src/ts/examples/tutorials/hybrid/ex1adj.c
/petsc/src/ts/examples/tutorials/hybrid/ex1fwd.c
/petsc/src/ts/examples/tutorials/power_grid/ex3opt.c
/petsc/src/ts/examples/tutorials/power_grid/ex3sa.c
/petsc/src/ts/examples/tutorials/power_grid/ex9adj.c
/petsc/src/ts/examples/tutorials/power_grid/ex9opt.c
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/ex9busopt.c
makefile
ts.c
tssen.c
3281479506-Mar-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'denera/fix-tablevels-for-views' [PR #869]

* denera/fix-tablevels-for-views:
Instead of manual push-pop tab operations, views now inherit tablevels automatically.
This makes views consi

Merge branch 'denera/fix-tablevels-for-views' [PR #869]

* denera/fix-tablevels-for-views:
Instead of manual push-pop tab operations, views now inherit tablevels automatically.
This makes views consistent with default convergence monitors.

show more ...


/petsc/src/dm/impls/da/gr2.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/interface/dm.c
/petsc/src/ksp/ksp/examples/tutorials/ex10.c
/petsc/src/ksp/ksp/examples/tutorials/ex2.c
/petsc/src/ksp/ksp/examples/tutorials/output/ex2_sell_mumps.out
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/pc/examples/tests/ex3.c
/petsc/src/ksp/pc/impls/gamg/gamg.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/impls/aij/mpi/mumps/mumps.c
/petsc/src/mat/impls/aij/seq/superlu/superlu.c
/petsc/src/mat/impls/sell/seq/sell.c
/petsc/src/mat/impls/sell/seq/sell.h
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tutorials/ex19.c
/petsc/src/snes/examples/tutorials/ex5.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/tao/bound/examples/tutorials/output/plate2_1.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_2.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_3.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_4.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_5.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_6.out
/petsc/src/tao/bound/examples/tutorials/output/plate2_7.out
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/bound/impls/bqpip/bqpip.c
/petsc/src/tao/bound/impls/gpcg/gpcg.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/tao/complementarity/examples/tutorials/output/minsurf1_1.out
/petsc/src/tao/complementarity/examples/tutorials/output/minsurf1_2.out
/petsc/src/tao/complementarity/impls/asls/asfls.c
/petsc/src/tao/complementarity/impls/asls/asils.c
/petsc/src/tao/complementarity/impls/ssls/ssfls.c
/petsc/src/tao/complementarity/impls/ssls/ssils.c
/petsc/src/tao/constrained/impls/ipm/ipm.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/leastsquares/impls/pounders/pounders.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/tao/matrix/lmvmmat.c
/petsc/src/tao/pde_constrained/impls/lcl/lcl.c
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/minsurf2_3.out
/petsc/src/tao/unconstrained/impls/cg/taocg.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
/petsc/src/tao/unconstrained/impls/nls/nls.c
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/tao/unconstrained/impls/owlqn/owlqn.c
/petsc/src/ts/examples/tutorials/output/ex16opt_ic_1.out
/petsc/src/ts/examples/tutorials/output/ex16opt_p_1.out
/petsc/src/ts/examples/tutorials/output/ex20opt_ic_1.out
/petsc/src/ts/examples/tutorials/output/ex20opt_p_1.out
ts.c
/petsc/src/vec/vec/utils/vecglvis.c
1892711805-Mar-2018 Karl Rupp <me@karlrupp.net>

Merge branch 'hongzh/change-vecarray-to-mat-tlm'

* hongzh/change-vecarray-to-mat-tlm:
Uses a dense array instead of multiple vectors to store TLM sensitivity
and removes TSForwardSetRHSJacobianP (us

Merge branch 'hongzh/change-vecarray-to-mat-tlm'

* hongzh/change-vecarray-to-mat-tlm:
Uses a dense array instead of multiple vectors to store TLM sensitivity
and removes TSForwardSetRHSJacobianP (use TSAdjointSetRHSJacobian instead).

show more ...


/petsc/config/BuildSystem/config/packages/exodusii.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/examples/arch-mswin-gnu.py
/petsc/config/install.py
/petsc/include/makefile
/petsc/include/petsc/private/tsimpl.h
/petsc/include/petsccuda.h
/petsc/include/petsccusp.h
/petsc/include/petscmat.h
/petsc/include/petscsys.h
/petsc/include/petscts.h
/petsc/lib/petsc/conf/test
/petsc/src/dm/impls/da/gr2.c
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexexodusii.c
/petsc/src/dm/impls/plex/plexhdf5.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/website/documentation/changes/38.html
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/ksp/ksp/examples/tests/ex43.c
/petsc/src/ksp/ksp/examples/tutorials/ex1.c
/petsc/src/ksp/ksp/examples/tutorials/ex46.c
/petsc/src/ksp/ksp/examples/tutorials/ex52.c
/petsc/src/ksp/ksp/examples/tutorials/ex7.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/pc/impls/bddc/bddcprivate.c
/petsc/src/mat/examples/tests/ex192.c
/petsc/src/mat/examples/tests/ex2.c
/petsc/src/mat/examples/tests/ex218.c
/petsc/src/mat/examples/tests/ex5.c
/petsc/src/mat/examples/tests/ex72.c
/petsc/src/mat/impls/aij/mpi/mpicusp/mpiaijcusp.cu
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baij.h
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/baij/seq/baijfact2.c
/petsc/src/mat/impls/baij/seq/baijfact3.c
/petsc/src/mat/impls/baij/seq/baijfact81.c
/petsc/src/mat/impls/baij/seq/dgefa2.c
/petsc/src/mat/impls/baij/seq/makefile
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/mat/interface/matrix.c
/petsc/src/snes/examples/tutorials/ex10d/ex10.c
/petsc/src/snes/examples/tutorials/ex12.c
/petsc/src/snes/examples/tutorials/ex69.c
/petsc/src/snes/interface/noise/snesmfj2.c
/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/bag/bag.c
/petsc/src/sys/classes/draw/interface/drawreg.c
/petsc/src/sys/classes/draw/interface/dsave.c
/petsc/src/sys/classes/draw/utils/image.c
/petsc/src/sys/classes/matlabengine/matlab.c
/petsc/src/sys/classes/viewer/impls/ascii/filev.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/dll/dl.c
/petsc/src/sys/dll/reg.c
/petsc/src/sys/fileio/fdir.c
/petsc/src/sys/fileio/fpath.c
/petsc/src/sys/fileio/grpath.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/utils/pdisplay.c
/petsc/src/sys/utils/str.c
/petsc/src/sys/webclient/client.c
/petsc/src/tao/constrained/examples/tutorials/maros.c
/petsc/src/ts/examples/tutorials/ex11.c
/petsc/src/ts/examples/tutorials/ex20adj.c
/petsc/src/ts/examples/tutorials/ex20fwd.c
/petsc/src/ts/examples/tutorials/hybrid/ex1fwd.c
/petsc/src/ts/examples/tutorials/output/ex18_adv_0.out
/petsc/src/ts/examples/tutorials/output/ex20fwd_1.out
/petsc/src/ts/examples/tutorials/output/ex20fwd_2.out
/petsc/src/ts/examples/tutorials/power_grid/ex3opt.c
/petsc/src/ts/examples/tutorials/power_grid/ex3sa.c
/petsc/src/ts/examples/tutorials/power_grid/makefile
/petsc/src/ts/examples/tutorials/power_grid/output/ex3sa_1.out
/petsc/src/ts/examples/tutorials/power_grid/output/ex3sa_2.out
/petsc/src/ts/impls/implicit/theta/theta.c
ts.c
tsfwdsen.c
/petsc/src/vec/vec/impls/mpi/mpicusp/mpicusp.cu
/petsc/src/vec/vec/impls/mpi/pvec2.c
/petsc/src/vec/vec/impls/seq/dvec2.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcusp/veccusp2.cu
/petsc/src/vec/vec/interface/rvector.c
/petsc/src/vec/vec/utils/vecglvis.c
a05bf03e27-Feb-2018 Hong Zhang <hongzhang@anl.gov>

Reorganize TSAdjoint and deprecate some functions

The derivative routines are independent of integration methods, thus can be shared by adjoint and TLM.

Funded-by:
Project: FASTMATH
Time: 1.0 hours

Reorganize TSAdjoint and deprecate some functions

The derivative routines are independent of integration methods, thus can be shared by adjoint and TLM.

Funded-by:
Project: FASTMATH
Time: 1.0 hours
Reported-by:
Thanks-to:

show more ...


/petsc/include/petsc/private/tsimpl.h
/petsc/include/petscts.h
/petsc/src/mat/impls/dense/mpi/mpidense.c
/petsc/src/mat/impls/dense/seq/dense.c
/petsc/src/ts/examples/tutorials/ex20adj.c
/petsc/src/ts/examples/tutorials/ex20fwd.c
/petsc/src/ts/examples/tutorials/hybrid/ex1fwd.c
/petsc/src/ts/examples/tutorials/output/ex20fwd_2.out
/petsc/src/ts/examples/tutorials/power_grid/ex3opt.c
/petsc/src/ts/examples/tutorials/power_grid/ex3sa.c
/petsc/src/ts/examples/tutorials/power_grid/makefile
/petsc/src/ts/examples/tutorials/power_grid/output/ex3sa_1.out
/petsc/src/ts/examples/tutorials/power_grid/output/ex3sa_2.out
makefile
ts.c
tssen.c
63b1541527-Feb-2018 Alp Dener <adener@mcs.anl.gov>

Wrapping up for a pull request


/petsc/src/dm/interface/dm.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/ksp/interface/iterativ.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/snes/interface/snes.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/tao/bound/impls/blmvm/blmvm.c
/petsc/src/tao/bound/impls/bqpip/bqpip.c
/petsc/src/tao/bound/impls/gpcg/gpcg.c
/petsc/src/tao/bound/impls/tron/tron.c
/petsc/src/tao/complementarity/impls/asls/asfls.c
/petsc/src/tao/complementarity/impls/asls/asils.c
/petsc/src/tao/complementarity/impls/ssls/ssfls.c
/petsc/src/tao/complementarity/impls/ssls/ssils.c
/petsc/src/tao/constrained/impls/ipm/ipm.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/leastsquares/impls/pounders/pounders.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/tao/matrix/lmvmmat.c
/petsc/src/tao/pde_constrained/impls/lcl/lcl.c
/petsc/src/tao/unconstrained/impls/cg/taocg.c
/petsc/src/tao/unconstrained/impls/lmvm/lmvm.c
/petsc/src/tao/unconstrained/impls/nls/nls.c
/petsc/src/tao/unconstrained/impls/ntl/ntl.c
/petsc/src/tao/unconstrained/impls/ntr/ntr.c
/petsc/src/tao/unconstrained/impls/owlqn/owlqn.c
ts.c
19b5c10127-Feb-2018 Alp Dener <adener@mcs.anl.gov>

All views changed to inherit tab levels from associated objects


/petsc/include/petsccuda.h
/petsc/include/petsccusp.h
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/interface/dm.c
/petsc/src/docs/website/documentation/changes/38.html
/petsc/src/ksp/ksp/examples/tests/ex43.c
/petsc/src/ksp/ksp/examples/tutorials/ex1.c
/petsc/src/ksp/ksp/examples/tutorials/ex46.c
/petsc/src/ksp/ksp/examples/tutorials/ex7.c
/petsc/src/ksp/ksp/interface/itcreate.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/examples/tests/ex2.c
/petsc/src/mat/examples/tests/ex5.c
/petsc/src/mat/impls/aij/mpi/mpicusp/mpiaijcusp.cu
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/baij/seq/baij.h
/petsc/src/mat/impls/baij/seq/baij2.c
/petsc/src/mat/impls/baij/seq/baijfact2.c
/petsc/src/mat/impls/baij/seq/baijfact3.c
/petsc/src/mat/impls/baij/seq/baijfact81.c
/petsc/src/mat/impls/baij/seq/dgefa2.c
/petsc/src/mat/impls/baij/seq/makefile
/petsc/src/snes/interface/snes.c
/petsc/src/snes/linesearch/interface/linesearch.c
/petsc/src/snes/utils/dmsnes.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/linesearch/interface/taolinesearch.c
/petsc/src/ts/examples/tutorials/output/ex18_adv_0.out
ts.c
/petsc/src/vec/vec/impls/mpi/mpicusp/mpicusp.cu
/petsc/src/vec/vec/impls/mpi/pvec2.c
/petsc/src/vec/vec/impls/seq/dvec2.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcusp/veccusp2.cu
e50c9f0b27-Feb-2018 Barry Smith <bsmith@mcs.anl.gov>

Merge branch 'barry/fix-ts-view-push-tab'


/petsc/bitbucket-pipelines.yml
/petsc/config/PETSc/Configure.py
/petsc/include/petsc/private/pcimpl.h
/petsc/lib/petsc/bin/petsclogformat.py
/petsc/src/docs/website/index.html
/petsc/src/docs/website/miscellaneous/petscthreads.html
/petsc/src/ksp/ksp/interface/dlregisksp.c
/petsc/src/ksp/pc/impls/bjacobi/bjacobi.c
/petsc/src/ksp/pc/impls/composite/composite.c
/petsc/src/ksp/pc/interface/precon.c
/petsc/src/mat/impls/baij/seq/baij.c
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/interface/dlregismat.c
/petsc/src/snes/examples/tutorials/ex77.c
/petsc/src/ts/examples/tutorials/output/ex18_adv_1.out
/petsc/src/ts/examples/tutorials/output/ex18_adv_3_ex.out
/petsc/src/ts/impls/pseudo/posindep.c
ts.c
tsreg.c
/petsc/src/vec/vec/examples/tests/ex15.c
/petsc/src/vec/vec/examples/tests/ex16.c
/petsc/src/vec/vec/examples/tests/output/ex15_1.out
/petsc/src/vec/vec/examples/tests/output/ex16_1.out
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/impls/seq/bvec2.c
c3a89c1524-Feb-2018 Barry Smith <bsmith@mcs.anl.gov>

Remove/move all items from $PETSC_DIR/bin so that package maintainers don't have to deal with non-standard usage.

Commit-type: style-fix


/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/package.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/MPICH.py
/petsc/config/BuildSystem/config/packages/SuperLU_DIST.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/sowing.py
/petsc/config/PETSc/options/petscclone.py
/petsc/config/PETSc/options/petscdir.py
/petsc/config/configure.py
/petsc/config/examples/arch-cuda-double.py
/petsc/config/examples/arch-cuda-single.py
/petsc/config/examples/arch-mswin-borland.py
/petsc/config/examples/arch-mswin-cxx-cmplx.py
/petsc/config/examples/arch-mswin.py
/petsc/config/gmakegentest.py
/petsc/config/install.py
/petsc/config/petsc_harness.sh
/petsc/config/report_tests.py
/petsc/config/testparse.py
/petsc/gmakefile
/petsc/gmakefile.test
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsccuda.h
/petsc/include/petsccusp.h
/petsc/include/petscdmplex.h
/petsc/include/petscis.h
/petsc/include/petscmat.h
/petsc/include/petscpc.h
/petsc/include/petscsys.h
/petsc/lib/petsc/bin/PetscBinaryIO.py
/petsc/lib/petsc/bin/PetscBinaryIOTrajectory.py
/petsc/lib/petsc/bin/PetscBinaryIO_tests.py
/petsc/lib/petsc/bin/maint/PetscStaticFunctionCandidates.py
/petsc/lib/petsc/bin/maint/bk2darcs.py
/petsc/lib/petsc/bin/maint/bk2hg.py
/petsc/lib/petsc/bin/maint/branches.py
/petsc/lib/petsc/bin/maint/bugReport.py
/petsc/lib/petsc/bin/maint/buildconfigtest
/petsc/lib/petsc/bin/maint/builddist
/petsc/lib/petsc/bin/maint/buildremotes
/petsc/lib/petsc/bin/maint/buildtest
/petsc/lib/petsc/bin/maint/buildtest.py
/petsc/lib/petsc/bin/maint/checkBuilds.py
/petsc/lib/petsc/bin/maint/checkloc.py
/petsc/lib/petsc/bin/maint/confignightly/cg
/petsc/lib/petsc/bin/maint/confignightly/cg2
/petsc/lib/petsc/bin/maint/confignightly/cg3
/petsc/lib/petsc/bin/maint/confignightly/cg4
/petsc/lib/petsc/bin/maint/confignightly/churn
/petsc/lib/petsc/bin/maint/confignightly/churn2
/petsc/lib/petsc/bin/maint/confignightly/churn3
/petsc/lib/petsc/bin/maint/confignightly/crank
/petsc/lib/petsc/bin/maint/confignightly/crank2
/petsc/lib/petsc/bin/maint/confignightly/crank3
/petsc/lib/petsc/bin/maint/confignightly/crush
/petsc/lib/petsc/bin/maint/confignightly/crush2
/petsc/lib/petsc/bin/maint/confignightly/crush3
/petsc/lib/petsc/bin/maint/confignightly/default
/petsc/lib/petsc/bin/maint/confignightly/el6
/petsc/lib/petsc/bin/maint/confignightly/el6-2
/petsc/lib/petsc/bin/maint/confignightly/el6-3
/petsc/lib/petsc/bin/maint/confignightly/el6-4
/petsc/lib/petsc/bin/maint/confignightly/es
/petsc/lib/petsc/bin/maint/confignightly/es2
/petsc/lib/petsc/bin/maint/confignightly/es3
/petsc/lib/petsc/bin/maint/confignightly/es4
/petsc/lib/petsc/bin/maint/confignightly/grind
/petsc/lib/petsc/bin/maint/confignightly/grind2
/petsc/lib/petsc/bin/maint/confignightly/grind3
/petsc/lib/petsc/bin/maint/confignightly/ipro
/petsc/lib/petsc/bin/maint/confignightly/ipro2
/petsc/lib/petsc/bin/maint/confignightly/ipro3
/petsc/lib/petsc/bin/maint/confignightly/ipro4
/petsc/lib/petsc/bin/maint/confignightly/knl
/petsc/lib/petsc/bin/maint/confignightly/knl2
/petsc/lib/petsc/bin/maint/confignightly/n-gage
/petsc/lib/petsc/bin/maint/confignightly/n-gage2
/petsc/lib/petsc/bin/maint/confignightly/n-gage3
/petsc/lib/petsc/bin/maint/confignightly/petsc-mini4
/petsc/lib/petsc/bin/maint/confignightly/ps3
/petsc/lib/petsc/bin/maint/confignightly/ps3-2
/petsc/lib/petsc/bin/maint/confignightly/ps4
/petsc/lib/petsc/bin/maint/confignightly/ps4-2
/petsc/lib/petsc/bin/maint/confignightly/ps4-3
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/petsc/src/ts/examples/tutorials/output/ex11_adv_2d_quad_0.out
/petsc/src/ts/examples/tutorials/output/ex11_adv_2d_quad_1.out
/petsc/src/ts/examples/tutorials/output/ex50_1.out
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/petsc/src/ts/examples/tutorials/output/ex50_4.out
ts.c
/petsc/src/ts/trajectory/impls/visualization/trajvisualization.c
/petsc/src/vec/f90-mod/petscis.h
/petsc/src/vec/f90-mod/petscis.h90
/petsc/src/vec/is/is/interface/ftn-custom/zindexf.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/vec/examples/tests/ex11.c
/petsc/src/vec/vec/examples/tests/ex29.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqcusp/veccusp2.cu
825ab93524-Feb-2018 Barry Smith <bsmith@mcs.anl.gov>

Fixes for TSView to add proper tabbing

1) add PetscViewerASCIIPushTab() PetscViewerASCIIPopTab() for SNESView inside TSView()
2) make sure usessnes is properly set and unset depending on if the TS m

Fixes for TSView to add proper tabbing

1) add PetscViewerASCIIPushTab() PetscViewerASCIIPopTab() for SNESView inside TSView()
2) make sure usessnes is properly set and unset depending on if the TS method uses SNES
3) fix output for two TS examples that do not use SNES

Commit-type: bug-fix
Reported-by: Alp Dener <adener@anl.gov>
Thanks-to: Todd Munson <tmunson@mcs.anl.gov>

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/petsc/src/snes/impls/tr/tr.c
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/petsc/src/sys/objects/pinit.c
/petsc/src/tao/bound/examples/tutorials/jbearing2.c
/petsc/src/tao/examples/tutorials/ex3.c
/petsc/src/tao/matrix/adamat.c
/petsc/src/tao/matrix/submatfree.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex2.c
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/petsc/src/ts/examples/tutorials/output/ex50_4.out
/petsc/src/ts/impls/pseudo/posindep.c
ts.c
tsreg.c
/petsc/src/vec/f90-mod/petscis.h
/petsc/src/vec/f90-mod/petscis.h90
/petsc/src/vec/is/is/interface/ftn-custom/zindexf.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/vec/examples/tests/ex11.c
/petsc/src/vec/vec/examples/tests/ex29.c
/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/mpi/pbvec.c
/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/impls/seq/seqcusp/veccusp2.cu
f3b1f45c13-Feb-2018 Barry Smith <bsmith@mcs.anl.gov>

Add code for automatically checking if shell matrix vector and transpose matrix vector products work with TS

Added MatShellTestMult(), MatShellTestMultTranspose(), TSRHSJacobianTest(), and TSRHSJaco

Add code for automatically checking if shell matrix vector and transpose matrix vector products work with TS

Added MatShellTestMult(), MatShellTestMultTranspose(), TSRHSJacobianTest(), and TSRHSJacobianTestTranspose()

Commit-type: feature

show more ...


/petsc/include/petsc/private/tsimpl.h
/petsc/include/petscgll.h
/petsc/include/petscmat.h
/petsc/include/petscts.h
/petsc/src/docs/tex/manual/part2.tex
/petsc/src/docs/website/documentation/changes/dev.html
/petsc/src/mat/examples/tests/ex214.c
/petsc/src/mat/examples/tests/makefile
/petsc/src/mat/examples/tests/output/ex214_1.out
/petsc/src/mat/impls/shell/shell.c
/petsc/src/mat/utils/axpy.c
/petsc/src/sys/classes/gll/petscgll.c
/petsc/src/tao/unconstrained/examples/tutorials/burgers_spectral.c
/petsc/src/tao/unconstrained/examples/tutorials/output/burgers_spectral.out
/petsc/src/tao/unconstrained/examples/tutorials/output/burgers_spectral_2.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5.c
/petsc/src/ts/examples/tutorials/ex16adj.c
/petsc/src/ts/examples/tutorials/ex16opt_ic.c
/petsc/src/ts/examples/tutorials/ex50.c
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/petsc/src/ts/examples/tutorials/output/ex50_1.out
/petsc/src/ts/examples/tutorials/output/ex50_2.out
ts.c
edbaebb311-Feb-2018 Barry Smith <bsmith@mcs.anl.gov>

-ts_monitor_error can now draw error as well as print the 2-norm

Commit-type: feature


/petsc/bin/maint/buildtest
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/petsc/share/petsc/datafiles/meshes/cube_periodic.msh
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/petsc/share/petsc/datafiles/meshes/square_periodic.msh
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ts.c
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1fd2f6ed02-Feb-2018 Hong Zhang <hongzhang@anl.gov>

Require users to provide the sensitivity matrix

Funded-by:
Project: FASTMath
Time: 1.0 hours
Reported-by:
Thanks-to:


tsfwdsen.c
13b1b0ff01-Feb-2018 Hong Zhang <hongzhang@anl.gov>

Refactor the TLM model

- The forward sensitivities are now stored in dense matrices. ex20fwd is modified to test the change.
- TSForwardSetRHSJacobianP has been removed. TSForward uses the JacobianP

Refactor the TLM model

- The forward sensitivities are now stored in dense matrices. ex20fwd is modified to test the change.
- TSForwardSetRHSJacobianP has been removed. TSForward uses the JacobianP matrix that one provides via the TSAdjoint interface.

Funded-by:
Project: FASTMath
Time: 8.0 hours
Reported-by:
Thanks-to:

show more ...


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/petsc/src/ts/examples/tutorials/output/ex49_1.out
/petsc/src/ts/examples/tutorials/power_grid/stability_9bus/output/ex9bus_semiexplicit_alt_2.out
/petsc/src/ts/impls/bdf/bdf.c
/petsc/src/ts/impls/implicit/alpha/alpha1.c
/petsc/src/ts/impls/implicit/alpha/alpha2.c
/petsc/src/ts/impls/implicit/radau5/radau5.c
/petsc/src/ts/impls/implicit/theta/theta.c
ts.c
tsfwdsen.c
/petsc/src/vec/pf/impls/string/cstring.c
/petsc/src/vec/vec/examples/tests/ex46.c
/petsc/src/vec/vec/examples/tutorials/ex5.c
/petsc/src/vec/vec/utils/projection.c
/petsc/src/vec/vec/utils/vpscat.c
/petsc/src/vec/vec/utils/vpscat_mpi1.c
d249a78f13-Jan-2018 Barry Smith <bsmith@mcs.anl.gov>

Start implementation of Radau5 interface

Reproduce Radau5 result for simple test case

Commit-type: feature


/petsc/bin/maint/buildtest
/petsc/bin/maint/confignightly/steamroller3
/petsc/bin/maint/examplesMkParse.py
/petsc/bin/maint/testharness_util.py
/petsc/bin/petscmpiexec
/petsc/config/BuildSystem/config/compilerOptions.py
/petsc/config/BuildSystem/config/compilers.py
/petsc/config/BuildSystem/config/framework.py
/petsc/config/BuildSystem/config/headers.py
/petsc/config/BuildSystem/config/packages/BlasLapack.py
/petsc/config/BuildSystem/config/packages/MPI.py
/petsc/config/BuildSystem/config/packages/OpenMPI.py
/petsc/config/BuildSystem/config/packages/Trilinos.py
/petsc/config/BuildSystem/config/packages/exodusii.py
/petsc/config/BuildSystem/config/packages/hwloc.py
/petsc/config/BuildSystem/config/packages/make.py
/petsc/config/BuildSystem/config/packages/netcdf.py
/petsc/config/BuildSystem/config/packages/openblas.py
/petsc/config/BuildSystem/config/packages/petsc4py.py
/petsc/config/BuildSystem/config/packages/pnetcdf.py
/petsc/config/BuildSystem/config/packages/radau5.py
/petsc/config/BuildSystem/config/packages/yaml.py
/petsc/config/PETSc/Configure.py
/petsc/config/PETSc/options/scalarTypes.py
/petsc/config/examples/arch-c-exodus-dbg-builder.py
/petsc/config/examples/arch-freebsd-cxx-pkgs-opt.csh
/petsc/config/examples/arch-linux-cmplx-gcov.csh
/petsc/config/examples/arch-linux-cmplx-single.py
/petsc/config/examples/arch-linux-knl.py
/petsc/config/examples/arch-linux-pkgs-gcov.py
/petsc/config/examples/arch-osx-10.6-cxx-pkgs-opt.csh
/petsc/config/gmakegentest.py
/petsc/config/install.py
/petsc/config/petsc_harness.sh
/petsc/config/report_tests.py
/petsc/config/testparse.py
/petsc/gmakefile.test
/petsc/include/petsc/finclude/petscdm.h
/petsc/include/petsc/finclude/petscsys.h
/petsc/include/petsc/finclude/petscts.h
/petsc/include/petsc/mpiuni/mpi.h
/petsc/include/petsc/private/dmadaptorimpl.h
/petsc/include/petsc/private/dmdaimpl.h
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/dmpleximpl.h
/petsc/include/petsc/private/matimpl.h
/petsc/include/petsc/private/petscdsimpl.h
/petsc/include/petsc/private/petscfeimpl.h
/petsc/include/petsc/private/petscimpl.h
/petsc/include/petsc/private/vecimpl.h
/petsc/include/petscblaslapack.h
/petsc/include/petscblaslapack_mangle.h
/petsc/include/petscblaslapack_stdcall.h
/petsc/include/petscdm.h
/petsc/include/petscdmadaptor.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmshell.h
/petsc/include/petscdmtypes.h
/petsc/include/petscds.h
/petsc/include/petscerror.h
/petsc/include/petscfe.h
/petsc/include/petscis.h
/petsc/include/petscmat.h
/petsc/include/petscmath.h
/petsc/include/petscpctypes.h
/petsc/include/petscsnes.h
/petsc/include/petscsys.h
/petsc/include/petsctao.h
/petsc/include/petscts.h
/petsc/include/petscvec.h
/petsc/include/petscversion.h
/petsc/lib/petsc/conf/bfort-petsc.txt
/petsc/lib/petsc/conf/rules
/petsc/lib/petsc/conf/test
/petsc/makefile
/petsc/share/petsc/datafiles/meshes/FourBrickHex-large.exo
/petsc/share/petsc/datafiles/meshes/FourBrickTet-large.exo
/petsc/share/petsc/datafiles/meshes/FourSquareH-large.exo
/petsc/share/petsc/datafiles/meshes/FourSquareQ-large.exo
/petsc/share/petsc/datafiles/meshes/FourSquareT-large.exo
/petsc/share/petsc/datafiles/meshes/TwoQuads.exo
/petsc/src/benchmarks/streams/MPIVersion.c
/petsc/src/benchmarks/streams/makefile
/petsc/src/benchmarks/streams/process.py
/petsc/src/dm/dt/interface/dt.c
/petsc/src/dm/dt/interface/dtds.c
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/dt/interface/dtfv.c
/petsc/src/dm/examples/tests/ex1.c
/petsc/src/dm/examples/tests/ex11.c
/petsc/src/dm/examples/tests/ex16.c
/petsc/src/dm/examples/tests/ex2.c
/petsc/src/dm/examples/tests/ex24.c
/petsc/src/dm/examples/tests/ex25.c
/petsc/src/dm/examples/tests/ex3.c
/petsc/src/dm/examples/tests/ex30.c
/petsc/src/dm/examples/tests/ex31.c
/petsc/src/dm/examples/tests/ex32.c
/petsc/src/dm/examples/tests/ex34.c
/petsc/src/dm/examples/tests/ex36.c
/petsc/src/dm/examples/tests/ex37.c
/petsc/src/dm/examples/tests/ex39.c
/petsc/src/dm/examples/tests/ex4.c
/petsc/src/dm/examples/tests/ex40.c
/petsc/src/dm/examples/tests/ex41.c
/petsc/src/dm/examples/tests/ex42.c
/petsc/src/dm/examples/tests/ex43.c
/petsc/src/dm/examples/tests/ex44.c
/petsc/src/dm/examples/tests/ex45.c
/petsc/src/dm/examples/tests/ex5.c
/petsc/src/dm/examples/tests/ex6.c
/petsc/src/dm/examples/tests/ex7.c
/petsc/src/dm/examples/tests/makefile
/petsc/src/dm/examples/tests/output/ex11_1.out
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/petsc/src/dm/examples/tests/output/ex11_3.out
/petsc/src/dm/examples/tests/output/ex1_1.out
/petsc/src/dm/examples/tests/output/ex1_cusp1.out
/petsc/src/dm/examples/tests/output/ex1_cusp2.out
/petsc/src/dm/examples/tests/output/ex24_1.out
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/petsc/src/dm/examples/tests/output/ex39_1.out
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/petsc/src/dm/examples/tests/output/ex3_1.out
/petsc/src/dm/examples/tests/output/ex40_1.out
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/petsc/src/dm/examples/tests/output/ex6_1.out
/petsc/src/dm/examples/tests/output/ex7_1.out
/petsc/src/dm/examples/tutorials/ex1.c
/petsc/src/dm/examples/tutorials/ex10.c
/petsc/src/dm/examples/tutorials/ex11f90.F90
/petsc/src/dm/examples/tutorials/ex12.c
/petsc/src/dm/examples/tutorials/ex13f90.F90
/petsc/src/dm/examples/tutorials/ex15.c
/petsc/src/dm/examples/tutorials/ex19.c
/petsc/src/dm/examples/tutorials/ex2.c
/petsc/src/dm/examples/tutorials/ex20.c
/petsc/src/dm/examples/tutorials/ex3.c
/petsc/src/dm/examples/tutorials/ex4.c
/petsc/src/dm/examples/tutorials/ex5.c
/petsc/src/dm/examples/tutorials/ex51.c
/petsc/src/dm/examples/tutorials/ex6.c
/petsc/src/dm/examples/tutorials/ex7.c
/petsc/src/dm/examples/tutorials/ex9.c
/petsc/src/dm/examples/tutorials/makefile
/petsc/src/dm/examples/tutorials/output/ex10_1.out
/petsc/src/dm/examples/tutorials/output/ex11f90_1.out
/petsc/src/dm/examples/tutorials/output/ex12_1.out
/petsc/src/dm/examples/tutorials/output/ex19_1.out
/petsc/src/dm/examples/tutorials/output/ex1_1.out
/petsc/src/dm/examples/tutorials/output/ex20_1.out
/petsc/src/dm/examples/tutorials/output/ex20_2.out
/petsc/src/dm/examples/tutorials/output/ex2_1.out
/petsc/src/dm/examples/tutorials/output/ex4_1.out
/petsc/src/dm/examples/tutorials/output/ex7_1.out
/petsc/src/dm/examples/tutorials/output/ex9_1.out
/petsc/src/dm/examples/tutorials/output/swarm_ex1.out
/petsc/src/dm/examples/tutorials/output/swarm_ex1_2.out
/petsc/src/dm/examples/tutorials/output/swarm_ex1_3.out
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/petsc/src/dm/examples/tutorials/output/swarm_ex2.out
/petsc/src/dm/examples/tutorials/output/swarm_ex3.out
/petsc/src/dm/examples/tutorials/swarm_ex1.c
/petsc/src/dm/examples/tutorials/swarm_ex2.c
/petsc/src/dm/examples/tutorials/swarm_ex3.c
/petsc/src/dm/f90-mod/petscdm.h
/petsc/src/dm/impls/da/da2.c
/petsc/src/dm/impls/da/da3.c
/petsc/src/dm/impls/da/dacreate.c
/petsc/src/dm/impls/da/dadist.c
/petsc/src/dm/impls/da/dagtol.c
/petsc/src/dm/impls/da/gr2.c
/petsc/src/dm/impls/da/hypre/mhyp.c
/petsc/src/dm/impls/forest/forest.c
/petsc/src/dm/impls/forest/p4est/pforest.c
/petsc/src/dm/impls/network/network.c
/petsc/src/dm/impls/patch/patch.c
/petsc/src/dm/impls/patch/patchcreate.c
/petsc/src/dm/impls/plex/examples/tests/ex1.c
/petsc/src/dm/impls/plex/examples/tests/ex18.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex20.c
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/petsc/src/dm/impls/plex/examples/tests/ex3.c
/petsc/src/dm/impls/plex/examples/tests/ex4.c
/petsc/src/dm/impls/plex/examples/tests/ex5.c
/petsc/src/dm/impls/plex/examples/tests/ex7.c
/petsc/src/dm/impls/plex/examples/tests/ex8.c
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/petsc/src/vec/vec/impls/mpi/mpicuda/mpicuda.cu
/petsc/src/vec/vec/impls/mpi/pvecimpl.h
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda.c
/petsc/src/vec/vec/impls/seq/seqcuda/veccuda2.cu
/petsc/src/vec/vec/interface/dlregisvec.c
/petsc/src/vec/vec/interface/ftn-custom/zvectorf.c
/petsc/src/vec/vec/interface/vector.c
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/petsc/src/vec/vec/utils/vscat.c
e34fd82d07-Dec-2017 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/barry/ssisc-spectral-adjoint'


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/petsc/config/PETSc/Configure.py
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/petsc/config/examples/arch-linux-pkgs-cxx-mlib.py
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/petsc/include/petsctao.h
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/petsc/lib/petsc/conf/bfort-petsc.txt
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/petsc/src/mat/impls/aij/mpi/fdmpiaij.c
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/petsc/src/mat/impls/aij/mpi/mpiov.c
/petsc/src/mat/impls/aij/mpi/strumpack/strumpack.c
/petsc/src/mat/impls/aij/seq/aij.c
/petsc/src/mat/impls/aij/seq/bas/spbas.c
/petsc/src/mat/impls/aij/seq/fdaij.c
/petsc/src/mat/impls/composite/mcomposite.c
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/petsc/src/mat/impls/nest/matnest.c
/petsc/src/mat/impls/sell/makefile
/petsc/src/mat/impls/sell/mpi/makefile
/petsc/src/mat/impls/sell/mpi/mmsell.c
/petsc/src/mat/impls/sell/mpi/mpisell.c
/petsc/src/mat/impls/sell/mpi/mpisell.h
/petsc/src/mat/impls/sell/seq/fdsell.c
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/petsc/src/mat/impls/sell/seq/sell.c
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/petsc/src/mat/interface/matregis.c
/petsc/src/mat/partition/partition.c
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/petsc/src/snes/interface/snes.c
/petsc/src/sys/classes/draw/impls/x/ximpl.h
/petsc/src/sys/classes/draw/utils/lgc.c
/petsc/src/sys/classes/gll/petscgll.c
/petsc/src/sys/classes/viewer/impls/binary/binv.c
/petsc/src/sys/classes/viewer/impls/vtk/vtkv.c
/petsc/src/sys/examples/tests/ex13f.F90
/petsc/src/sys/examples/tutorials/ex4f.F
/petsc/src/sys/f90-src/f90_cwrap.c
/petsc/src/sys/fileio/sysio.c
/petsc/src/tao/interface/fdtest.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/leastsquares/examples/tutorials/chwirut1f.F90
/petsc/src/tao/unconstrained/examples/tutorials/adjointreads.m
/petsc/src/tao/unconstrained/examples/tutorials/burgers_spectral.c
/petsc/src/tao/unconstrained/examples/tutorials/convergencestudy.m
/petsc/src/tao/unconstrained/examples/tutorials/convergencestudyburger.m
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/petsc/src/tao/unconstrained/examples/tutorials/output/spectraladjointassimilation_cn.out
/petsc/src/tao/unconstrained/examples/tutorials/rosenbrock1f.F90
/petsc/src/tao/unconstrained/examples/tutorials/spectraladjointassimilation.c
/petsc/src/ts/examples/tests/ex1.c
/petsc/src/ts/examples/tests/ex2.c
/petsc/src/ts/examples/tests/ex25.c
/petsc/src/ts/examples/tests/ex3.c
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/petsc/src/ts/examples/tests/output/ex2_beuler.out
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/petsc/src/ts/examples/tutorials/extchem.c
/petsc/src/ts/examples/tutorials/hybrid/ex1.c
/petsc/src/ts/examples/tutorials/hybrid/ex1adj.c
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/petsc/src/ts/examples/tutorials/output/ex5_nox.out
/petsc/src/ts/examples/tutorials/output/extchem_1.out
/petsc/src/ts/examples/tutorials/power_grid/ex6.c
/petsc/src/ts/examples/tutorials/power_grid/ex9adj.c
/petsc/src/ts/impls/explicit/rk/rk.c
ts.c
/petsc/src/ts/trajectory/impls/basic/trajbasic.c
/petsc/src/ts/trajectory/interface/traj.c
/petsc/src/ts/utils/dmts.c
/petsc/src/vec/f90-mod/petscis.h
/petsc/src/vec/f90-mod/petscvec.h90
/petsc/src/vec/f90-mod/petscvecmod.F
/petsc/src/vec/is/is/examples/tests/ex1f.F90
/petsc/src/vec/is/is/examples/tests/ex2f.F90
/petsc/src/vec/is/sf/examples/tutorials/ex1.c
/petsc/src/vec/is/sf/examples/tutorials/ex1f.F90
/petsc/src/vec/is/sf/examples/tutorials/makefile
/petsc/src/vec/is/sf/examples/tutorials/output/ex1f_1.out
/petsc/src/vec/is/sf/interface/ftn-custom/zsf.c
/petsc/src/vec/is/sf/interface/sf.c
/petsc/src/vec/is/utils/isltog.c
/petsc/src/vec/is/utils/isltog.h
/petsc/src/vec/vec/examples/tutorials/ex11f.F
/petsc/src/vec/vec/examples/tutorials/ex14f.F90
/petsc/src/vec/vec/examples/tutorials/ex1f.F
/petsc/src/vec/vec/examples/tutorials/ex1f90.F90
/petsc/src/vec/vec/examples/tutorials/ex20f90.F90
/petsc/src/vec/vec/examples/tutorials/ex9f.F90
/petsc/src/vec/vec/examples/tutorials/output/ex1f90_1.out
/petsc/src/vec/vec/examples/tutorials/output/ex20f90_1.out
/petsc/src/vec/vec/impls/mpi/pdvec.c
/petsc/src/vec/vec/utils/vsection.c
7cf37e6427-Nov-2017 Barry Smith <bsmith@mcs.anl.gov>

add TSMonitorError() and -tao_view_solution

Commit-type: feature


/petsc/include/petsctao.h
/petsc/include/petscts.h
/petsc/src/tao/interface/fdtest.c
/petsc/src/tao/interface/taosolver.c
/petsc/src/tao/unconstrained/examples/tutorials/adjointreads.m
/petsc/src/tao/unconstrained/examples/tutorials/burgers_spectral.c
/petsc/src/tao/unconstrained/examples/tutorials/convergencestudy.m
/petsc/src/tao/unconstrained/examples/tutorials/makefile
/petsc/src/tao/unconstrained/examples/tutorials/output/spectraladjointassimilation_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/spectraladjointassimilation_2.out
/petsc/src/tao/unconstrained/examples/tutorials/output/spectraladjointassimilation_cn.out
/petsc/src/tao/unconstrained/examples/tutorials/spectraladjointassimilation.c
ts.c
0ed3bfb617-Nov-2017 Barry Smith <bsmith@mcs.anl.gov>

Clean up simple spectral adjoint example, add advection term

Add crosslinks for some TS example and additional monitor functions

Commit-type: testing-fix,style-fix, feature


/petsc/include/petscdraw.h
/petsc/include/petscts.h
/petsc/src/docs/tex/petsc.bib
/petsc/src/sys/classes/draw/impls/x/ximpl.h
/petsc/src/sys/classes/draw/utils/lgc.c
/petsc/src/sys/classes/gll/petscgll.c
/petsc/src/tao/unconstrained/examples/tutorials/makefile
/petsc/src/tao/unconstrained/examples/tutorials/output/spectraladjointassimilation_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/spectraladjointassimilation_cn.out
/petsc/src/tao/unconstrained/examples/tutorials/spectraladjointassimilation.c
ts.c
/petsc/src/ts/utils/dmts.c
4a7a867920-Nov-2017 Stefano Zampini <stefano.zampini@gmail.com>

Merge remote-tracking branch 'origin/maint'


/petsc/config/BuildSystem/config/packages/szlib.py
/petsc/config/configure.py
/petsc/config/examples/arch-pardiso.py
/petsc/include/petsc/private/dmimpl.h
/petsc/include/petsc/private/glvisviewerimpl.h
/petsc/include/petsc/private/isimpl.h
/petsc/include/petscdm.h
/petsc/include/petscdmplex.h
/petsc/include/petscdmswarm.h
/petsc/include/petsclog.h
/petsc/include/petscsys.h
/petsc/include/petscts.h
/petsc/include/petscviewer.h
/petsc/makefile
/petsc/src/dm/dt/interface/dtfe.c
/petsc/src/dm/examples/tutorials/ex10.c
/petsc/src/dm/examples/tutorials/ex20.c
/petsc/src/dm/impls/composite/pack.c
/petsc/src/dm/impls/da/dageometry.c
/petsc/src/dm/impls/da/dalocal.c
/petsc/src/dm/impls/da/grglvis.c
/petsc/src/dm/impls/plex/examples/tests/ex19.c
/petsc/src/dm/impls/plex/examples/tests/ex22.c
/petsc/src/dm/impls/plex/examples/tests/output/ex19_proj_0.out
/petsc/src/dm/impls/plex/examples/tests/output/ex19_proj_1.out
/petsc/src/dm/impls/plex/plex.c
/petsc/src/dm/impls/plex/plexcreate.c
/petsc/src/dm/impls/plex/plexfem.c
/petsc/src/dm/impls/plex/plexfvm.c
/petsc/src/dm/impls/plex/plexgenerate.c
/petsc/src/dm/impls/plex/plexgeometry.c
/petsc/src/dm/impls/plex/plexglvis.c
/petsc/src/dm/impls/plex/plexgmsh.c
/petsc/src/dm/impls/plex/plexinterpolate.c
/petsc/src/dm/impls/plex/plexorient.c
/petsc/src/dm/impls/plex/plexproject.c
/petsc/src/dm/impls/plex/plexrefine.c
/petsc/src/dm/impls/plex/plexsubmesh.c
/petsc/src/dm/impls/plex/plextree.c
/petsc/src/dm/impls/redundant/dmredundant.c
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/petsc/src/sys/objects/init.c
/petsc/src/sys/objects/options.c
/petsc/src/sys/utils/str.c
/petsc/src/tao/constrained/impls/ipm/ipm.c
/petsc/src/ts/adapt/impls/basic/adaptbasic.c
/petsc/src/ts/adapt/impls/cfl/adaptcfl.c
/petsc/src/ts/adapt/impls/glee/adaptglee.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5adj.c
/petsc/src/ts/examples/tutorials/ex14.c
/petsc/src/ts/examples/tutorials/output/ex18_adv_3_ex.out
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/glee/glee.c
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ts.c
/petsc/src/vec/is/is/impls/general/general.c
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/petsc/src/vec/vec/impls/seq/bvec2.c
/petsc/src/vec/vec/utils/vecglvis.c
e91eccc220-Nov-2017 Stefano Zampini <stefano.zampini@gmail.com>

Fix typos and whitespaces already fixed in stefano_zampini/feature-continuousadjoint


/petsc/config/BuildSystem/config/compilers.py
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/petsc/src/ts/adapt/impls/basic/adaptbasic.c
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ts.c
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11e1d5c315-Nov-2017 Barry Smith <bsmith@mcs.anl.gov>

New generation of initial conditions and solution for Tao/TS heat example

Add support for generating and loading reference solutions
Commit-type: feature


/petsc/include/petsc/private/tsimpl.h
/petsc/src/tao/unconstrained/examples/tutorials/heat-data-assimulation.c
/petsc/src/tao/unconstrained/examples/tutorials/makefile
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ts.c
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1585b41214-Nov-2017 Barry Smith <bsmith@mcs.anl.gov>

Fix handling of TSTrajectory file templates, fix heat-data-assimulation.c computation of gradient

Code assumed TSTrajectorySetFromOptions() was called after one set the trajectory filename and templ

Fix handling of TSTrajectory file templates, fix heat-data-assimulation.c computation of gradient

Code assumed TSTrajectorySetFromOptions() was called after one set the trajectory filename and template
and built the final template in TSTrajectorySetFromOptions(). Thus calling the routines
TSTrajectorySetDirname() after calling TSTrajectorySetFromOptions() meant it was ignored.
Also the -ts_trajectory_file name is the incorrect translation of TSTrajectorySetFiletemplate()

Added large comment to heat-data-assimulation.c explain how to handle adjoint computation with mass matrix

Commit-type: bug-fix, style-fix, documentation, example

show more ...


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/petsc/src/tao/constrained/impls/ipm/ipm.c
/petsc/src/tao/unconstrained/examples/tutorials/heat-data-assimulation.c
/petsc/src/tao/unconstrained/examples/tutorials/output/heat-data-assimulation_1.out
/petsc/src/tao/unconstrained/examples/tutorials/output/heat-data-assimulation_cn.out
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/ex5adj.c
/petsc/src/ts/examples/tutorials/advection-diffusion-reaction/makefile
/petsc/src/ts/examples/tutorials/ex14.c
/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/glee/glee.c
/petsc/src/ts/impls/rosw/rosw.c
ts.c
/petsc/src/ts/trajectory/impls/basic/trajbasic.c
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/petsc/src/vec/is/is/impls/general/general.c
/petsc/src/vec/is/is/impls/stride/stride.c
/petsc/src/vec/is/utils/vsectionis.c
/petsc/src/vec/vec/utils/vecglvis.c
92f6fe9a11-Nov-2017 Satish Balay <balay@mcs.anl.gov>

Merge remote-tracking branch 'origin/hongzh/add-tstraj-filename'


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/petsc/src/ts/impls/arkimex/arkimex.c
/petsc/src/ts/impls/explicit/rk/rk.c
/petsc/src/ts/impls/glee/glee.c
/petsc/src/ts/impls/implicit/glle/glle.c
/petsc/src/ts/impls/implicit/theta/theta.c
/petsc/src/ts/impls/rosw/rosw.c
ts.c
/petsc/src/ts/trajectory/impls/basic/trajbasic.c
/petsc/src/ts/trajectory/interface/ftn-custom/makefile
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/petsc/src/vec/is/is/impls/f90-custom/zblockf90.c
/petsc/src/vec/is/is/interface/f90-custom/zindexf90.c
/petsc/src/vec/is/is/utils/f90-custom/ziscoloringf90.c
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/petsc/src/vec/vec/interface/f90-custom/zvectorf90.c
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e03a659c02-Nov-2017 Jed Brown <jed@jedbrown.org>

KSPSetDM, SNESSetDM, and TSSetDM: documentation

A DM can only be used to solve one problem at a time because information
about the problem is stored on the DM.

Reported-by: Blaise A Bourdin <bourdi

KSPSetDM, SNESSetDM, and TSSetDM: documentation

A DM can only be used to solve one problem at a time because information
about the problem is stored on the DM.

Reported-by: Blaise A Bourdin <bourdin@lsu.edu>

show more ...


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/petsc/src/ts/adapt/impls/dsp/adaptdsp.c
/petsc/src/ts/adapt/impls/dsp/ftn-custom/makefile
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ts.c
beaf1e4631-Oct-2017 Hong Zhang <hongzhang@anl.gov>

Remove duplicated call to TSTrajectorySetFromOptions


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ts.c
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/petsc/src/vec/vec/interface/vector.c
303f9b2101-Aug-2017 Stefano Zampini <stefano.zampini@gmail.com>

TS: added missing check for NULL B in TSComputeRHSJacobian


/petsc/include/petscsys.h
/petsc/src/sys/objects/inherit.c
ts.c

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