logging memory now credits to all ancestors

Use classname in object for object name when calling PetscObjectPrintClassNamePrefixType() instead of some string with less precise name passed in

DMMesh: Removed all trace and salted the earth, Carthago delenda est!

Modified interface for TS error norm calculation.

Renamed TSErrorNormWRMS to TSErrorWeightedNorm.
Implemented infinite weighted norm calculation.
Added option -ts_adapt_wnormtype to set the type of

Modified interface for TS error norm calculation.

Renamed TSErrorNormWRMS to TSErrorWeightedNorm.
Implemented infinite weighted norm calculation.
Added option -ts_adapt_wnormtype to set the type of norm computed.

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Merge branch 'dalcinl/ts-monitor'

* dalcinl/ts-monitor:
TS: remove last-step '-1 TS' monitor lines from output
TS: Remove last call to TSMonitor() with step=-1

Added functionality for setting IS for differential equations in a DAE.

TS: Remove last call to TSMonitor() with step=-1

* Call TSMonitor() at the beginning of each step.
* Update a some monitors to inspect ts->reason to detect the call after
the last (possibly interp

TS: Remove last call to TSMonitor() with step=-1

* Call TSMonitor() at the beginning of each step.
* Update a some monitors to inspect ts->reason to detect the call after
the last (possibly interpolated) step.
* TSSolve() requires users to pass a non NULL solution vector
when interpolation at the final time is set.
* Add error checking.

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TSGetAdapt: restore name from TSGetTSAdapt

This function was called TSGetAdapt in petsc-3.3 and was changed to
TSGetTSAdapt in:

commit ad6bc4219076b084d4a49a29c04a77944f238f10
Author: Barry Smi

TSGetAdapt: restore name from TSGetTSAdapt

This function was called TSGetAdapt in petsc-3.3 and was changed to
TSGetTSAdapt in:

commit ad6bc4219076b084d4a49a29c04a77944f238f10
Author: Barry Smith <bsmith@mcs.anl.gov>
Date: Sun Dec 9 18:14:24 2012 -0600

My first TS restart just 8 million other changes needed PETSc!
TSGetAdapt() changed to TSGetTSAdapt() because it gets a TSAdapt object, not an Adapt object
added TSAdapt binary view and load

This rationale does not match the more established convention used by
functions such as the following.

MatGetInfo
MatGetColoring
MatGetNullSpace
MatGetLocalToGlobalMapping
MatGetLocalToGlobalMappingBlock (31 characters)
SNESGetConvergedReason

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TSSSP: Fix to use proper TSSSPInitializePackage() system

The old code was lazy, relying on any unreferenced PetscFunctionList's
being silently cleaned up.

removed unnneeded and unused XXXRegisterDestroy() routines

removed PetscFunctionListDestroyAll() and put PetscFunctionListDestroy(&XXXList) into the package finalize

Merge branch 'jed/ts-eimex'

* jed/ts-eimex:
TSEIMEX: cleanup example and convergence tabulation
TSEIMEX: add basic test to nightlies, fix warning
Addressed Barry's comments from the EIMEX pull

Merge branch 'jed/ts-eimex'

* jed/ts-eimex:
TSEIMEX: cleanup example and convergence tabulation
TSEIMEX: add basic test to nightlies, fix warning
Addressed Barry's comments from the EIMEX pull request for the EIMEX tutorials
Addressed Barry's comments from the pull request for eimex.c
fixed the starting procedure in arkimex for DAEs to handle snes properly
fixed small ts typo
fixed ts typo
Updated and tested eimex examples
TSEIMEX: use makefile targets for running examples
Implementation of the Extrapolated IMEX schemes - initial push.
TSEIMEX: import extrapolated IMEX from mercurial repository

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PetscFunctionListAdd: use macro to hide (PetscVoidFunction) cast

Same rationale as the last commit:

Casting using PetscVoidFunction instead of (void(*)(void)) is needed
with C++ compilers that will

PetscFunctionListAdd: use macro to hide (PetscVoidFunction) cast

Same rationale as the last commit:

Casting using PetscVoidFunction instead of (void(*)(void)) is needed
with C++ compilers that will not implicitly convert C++ language linkage
to C language linkage. Since PetscFunctionListAdd() is meant to operate
on generic function pointers, we hide this language linkage detail
(which is inconsistently implemented) in a cast.

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PetscFunctionListFind: use macro to hide (PetscVoidFunction*) cast

Casting using PetscVoidFunction* instead of (void(**)(void)) is needed
with C++ compilers that will not implicitly convert C++ lang

PetscFunctionListFind: use macro to hide (PetscVoidFunction*) cast

Casting using PetscVoidFunction* instead of (void(**)(void)) is needed
with C++ compilers that will not implicitly convert C++ language linkage
to C language linkage. Since PetscFunctionListFind() is meant to operate
on generic function pointers, we hide this language linkage detail
(which is inconsistently implemented) in a cast.

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Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex

PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which

Merge branch 'barry/rm-xxxregisterdynamic' into jed/ts-eimex

PetscObjectComposeFunctionDynamic() and TSRegisterDynamic() were
replaced by PetscObjectComposeFunction() and TSRegister(), both of which
drop the string name argument.

* barry/rm-xxxregisterdynamic: (82 commits)
...

Conflicts:
src/ts/interface/tsregall.c

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removed string version of function name for XXXRegister(), PetscFunctionListAdd() and PetscObjectComposeFunction()

removed path and MPI_Comm arguments from PetscFunctionListFind/Add()

removed path argument to XXXInitializePackage() and XXXRegister()

removed XXXRegisterDynamic() but kept the APIs for everything else underneath the same
phase I of the update to handling registering function pointers

fixed ts typo

Merge branch 'master' into jed/ts-eimex

Sync to include Git conversion, PETSC_EXTERN, and minor API changes.

Conflicts:
src/ts/interface/tsregall.c