Section: Damn Damn Damn
Section: Somehow everything about that first commit was wrong
Section: Added binding for PetscSFDistributeSection()- Fortran is not allowed to pass in an array right now
Merge branch 'haplav/feature-mataij-load-from-hdf5' [PR #1232]* haplav/feature-mataij-load-from-hdf5:MatLoad() implementation for HDF5.This PR done with cooperation with @Mari Pecha brings the HD
Merge branch 'haplav/feature-mataij-load-from-hdf5' [PR #1232]* haplav/feature-mataij-load-from-hdf5:MatLoad() implementation for HDF5.This PR done with cooperation with @Mari Pecha brings the HDF5 matrix loader.Its impact is twofold: - It introduces a truly parallel reader where each rank reads its chunk of the matrix. - It can directly read MATLAB's native MAT-file format (version 7.3) which is in fact an HDF5 flavor.
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PetscLayoutSetUp: don't mention "matrix" in the error message
minor fixes
PetscSection: move 3 fortran stubs to the proper file
PetscLayoutSetUp: compute sizes from range if it exists
fix 'next' test fail: Change visibility of PetscViewerHDF5Load_Internal to PETSC_EXTERN.Since it is possibly used across multiple shared libraries. Renamed to PetscViewerHDF5Load.
minor formatting
PetscViewerHDF5Load_Internal employed in ISLoad_HDF5,VecLoad_HDF5
ISLoad_HDF5,VecLoad_HDF5 rewritten using new helper functions
Merge branch 'haplav/feature-dmplex-check-interface-cone-conformance' [PR #1164]* haplav/feature-dmplex-check-interface-cone-conformance:DMPlex: check for interface cone conformanceNew DMPlexChec
Merge branch 'haplav/feature-dmplex-check-interface-cone-conformance' [PR #1164]* haplav/feature-dmplex-check-interface-cone-conformance:DMPlex: check for interface cone conformanceNew DMPlexCheckConesConformOnInterfaces() checks that cones of points on inter-partition interfaces have conforming order.This check is now called in DMPlex test ex18.c. To reproduce the failed check, one can remove requires: TODO from tests.This merge also adds DMGetCoordinatesLocalSetUp() and DMGetCoordinatesLocalNoncollective() as I needed a non-collective version of DMGetCoordinatesLocal(), and fixes several notes on collectiveness in DMPlex documention.
Section: Fix bad merge
Merge branch 'master' into arcowie-rem/feature-error-logging* master: (393 commits) Bib: Update reference Mat: Doc fix Bib: Updated ref PetscDS: Doc fixes PC+LU: Do not try to refactor an
Merge branch 'master' into arcowie-rem/feature-error-logging* master: (393 commits) Bib: Update reference Mat: Doc fix Bib: Updated ref PetscDS: Doc fixes PC+LU: Do not try to refactor an already factored matrix Mat: Small fix for checking and docs Mat: Added MatSetFactorType() - Needed it when making a shell matrix look factored PetscDS: Added PetscDSUpdateBoundary() - Lets the user change the boundary condition single precision produces different convergence history p4est: has a dependency on zlib - so handle it correctly Add -mat_mffd_complex to use the Lyness complex number trick to compute J_u * v instead of differencing. Replace VecWAXPY by VecAXPY if needed Revert "Replace VecWAXPY by VecAXPY if needed" Replace VecWAXPY by VecAXPY if needed MatHermitianTransposeGetMat and MatCreateVecs ex19: Updated test filter to avoid false positives. DM: Improved Global-To-Natural docs Suggested-by: Josh L <ysjosh.lo@gmail.com> Do not build shared openblas when doing static build Upgrade OpenBLAS to 0.3.3 test: add alt output file for changes in OSX-10.14 and Xcode-10.0 [perhaps related to ML] ...Conflicts: src/vec/is/utils/vsectionis.c
PetscSectionExtractDofsFromArray: fix missing { }
PetscSectionExtractDofsFromArray: convert 'switch' to 'if' as MPI_Datatype is not necessarily constant
PetscSectionExtractDofsFromArray doc: mention currently supported MPI types
Do some housekeeping and add missing CHKERRQ calls
PetscLayoutSetBlockSize: the error is local, not collective!
IS: ISGlobalToLocalMappingApplyIS should return a sequential ISUpdate man pages
PetscSectionExtractDofsFromArray() impl.
Merge branch 'knepley/feature-section-field-major' [PR #1131]* knepley/feature-section-field-major:PetscSection: Cleanup point iteration in SetUp()Section: Add a point major flag to allow differe
Merge branch 'knepley/feature-section-field-major' [PR #1131]* knepley/feature-section-field-major:PetscSection: Cleanup point iteration in SetUp()Section: Add a point major flag to allow different dog orderings Does not do anything right nowSection: Added PetscSectionSetFromOptions()Plex: When Plex creates a section automatically, call SetFromOptions Could condition this on whether the DM has been set from optionsSection: During SetUp(), change dog ordering based on the pointMajor flag Plex ex27: Check Section dof ordering
Section: Use correct format string for PetscInt
Remove memory leaks of XXXRegister() is called but XXX object is never usedThis means adding YYYInitialPackage() at the beginning of XXXRegister() routinesMinor fixes of missing prototypesCommi
Remove memory leaks of XXXRegister() is called but XXX object is never usedThis means adding YYYInitialPackage() at the beginning of XXXRegister() routinesMinor fixes of missing prototypesCommit-type: style-fixReported-by: Jed Brown <jed@jedbrown.org>Thanks-to: Fande Kong <fande.kong@inl.gov>
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