| 6006e8d2 | 23-Aug-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
fix ISLocalToGlobalMappingCreateIS() to respect the block size of the IS
Added test case for it
Reported-by: Glenn Hammond <gehammo@sandia.gov> |
| e86dd1c7 | 05-Aug-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-plex-coords-parallel'
* knepley/fix-plex-coords-parallel:
DMPlex: Incorrect periodicity information
KSP+SNES: Converged output now includes prefix
DMPlex ex4: Fixed t
Merge branch 'knepley/fix-plex-coords-parallel'
* knepley/fix-plex-coords-parallel:
DMPlex: Incorrect periodicity information
KSP+SNES: Converged output now includes prefix
DMPlex ex4: Fixed test output
Mat+Coloring: Greedy coloring fix - Use ocolors[] for off-diagonal piece
PetscSection: Added check for mismatch between SF and Section
DMPlex: DMPlexReplace_Static() fixes - Should share coordinateDM, not just the section, so we get correct SF - Pass on periodicity information
DMPlex: Refinement should create SF before coordinates, so coordinateDM gets correct SF - Also pass on periodicity information
DMPlex: Distribution should create SF before coordinates, so coordinateDM gets correct SF - Also pass on periodicity information
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| 2bc0d5c7 | 27-Jun-2014 |
Stefano Zampini <stefano.zampini@gmail.com> |
Merge branch 'stefano_zampini/pcbddc-maint' into stefano_zampini/pcbddc_deluxe |
| d4fe737e | 27-Jun-2014 |
Stefano Zampini <stefano.zampini@gmail.com> |
ISLocalToGlobalMapping: added ISGlobalToLocalMappingApplyIS |
| f5aeb5aa | 24-Jun-2014 |
Satish Balay <balay@mcs.anl.gov> |
zvsectionisf90.c: fix unused variables warnings. |
| 6ed041ae | 24-Jun-2014 |
Satish Balay <balay@mcs.anl.gov> |
remame sources in src/vec/is/utils/f90-custom/ to z*f90.c notation
zisltogf.c -> zisltogf90.c
zvsectionisf.c -> zvsectionisf90.c
Also add zvsectionisf90.c to makefile [and enable its compilation] |
| cf1aed2c | 24-Jun-2014 |
Satish Balay <balay@mcs.anl.gov> |
mv src/vec/is/is/utils/ftn-custom/zisltogf.c src/vec/is/utils/ftn-custom/zisltogf.c |
| a43ede97 | 15-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
PetscSection: Added check for mismatch between SF and Section |
| 9f892594 | 09-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/feature-problem-class'
* knepley/feature-problem-class: (40 commits)
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate
Merge branch 'knepley/feature-problem-class'
* knepley/feature-problem-class: (40 commits)
PetscDS: Renamed from PetscProblem
ftn-types: fix compilers errors with PetscSection [remove duplicate code from petscvec*.h90]
PetscSection: Fix Fortran datatypes support
DMPlex: Added quads to cell refiner transform support
DMPlex ex3: Updated to Problem interface
DMDA: Fixed FE projection functions
PetscSection: Fixes for Fortran stubs
DMPlex+TS+Doc: Function docs
PetscSection: Fortran bindings
DMPlex+HDF5: Had revered handedness of transformed periodic coordinates
DMPlex+HDF5: Preserve aspect ratio with remapping of periodic coordinates
DMPlex: Added missing declarations
Sys+DMDT: Added PetscValidFunction()
DMPlex: Fix for DMPlexProjectField()
DMPlex+HDF5: Selectively output fields for viz - Fields with NULL name are ignored
PetscSection: Allow NULL names
DMPlex: Fixes for DMPlexProjectField()
PetscProblem: Added scalar integral (objective function) - Added PetscProblemGet/SetObjective() - Used in PetscFEIntegrate() - Reworked PetscProblemEnlarge_Static()
DM+DT: Adding Fortran bindings
PetscViewer: Added HDF_VIZ format to names
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| 5afc7a3d | 05-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
PetscSection: Fortran bindings |
| 682a1eba | 03-Jun-2014 |
Matthew G. Knepley <knepley@gmail.com> |
PetscSection: Allow NULL names |
| 0157cb02 | 02-Jun-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'jed/dmda-memusage' |
| 732f65e3 | 31-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
allocated one more space than needed in indices array |
| 6a818285 | 31-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
fixed ISLocalToGlobalMappingGetInfo() to handle block and non-block cases |
| 9d90f715 | 30-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
added ISGlobalToLocalMappingApplyBlock() and fixed the ISGlobalToLocalMappingApply() to work for points
added simple test for these |
| e24637ba | 30-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Lisandro gave me this so it must be good |
| 107e9a97 | 29-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
ISLocalToGlobalMappingGetSize() now returns total size, not size associated with blocks
added some Fortran and Fortran 90 interfaces for ISLocalToGlobalMapping |
| 565245c5 | 29-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
remove DMDAGetGlobalIndices() since handled by DMGetLocalToGlobalMapping() followed by ISLocalToGlobalMappingGetIndices()
fixed cases where bs of ISLocalToGlobalMapping in Mat did not match matrix bl
remove DMDAGetGlobalIndices() since handled by DMGetLocalToGlobalMapping() followed by ISLocalToGlobalMappingGetIndices()
fixed cases where bs of ISLocalToGlobalMapping in Mat did not match matrix block size
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| 021e0df4 | 23-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
Merge branch 'jed/dmda-memusage' |
| 6389a1a1 | 18-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
improve object memory logging for DA, ISLocalToGlobal and ISBLOCK |
| f26d699e | 18-May-2014 |
Matthew G. Knepley <knepley@gmail.com> |
Merge branch 'knepley/fix-pylith-parallel'
* knepley/fix-pylith-parallel: (22 commits)
DMPlex: In refinement, merge hybrid and non-hybrid SF creation (should be done for everything) - If missing,
Merge branch 'knepley/fix-pylith-parallel'
* knepley/fix-pylith-parallel: (22 commits)
DMPlex: In refinement, merge hybrid and non-hybrid SF creation (should be done for everything) - If missing, define *Max as *End - Fixed bound on hybrid 2D simplicial hybrid cell refinement - Fixes bug in which wrong remote point number was calculated if local process had no hybrid cells, but remote process did so refiners were mismatched
DMPlex: Fix for hybrid refinement - Must correct offsets when neighbor process has no hybrid points
DMPlex: Fix hex hybrid refinement SF - Fixed offset - Fixed number of cell faces - Fixed missing edge offset - Fixed number of cells faces - FIxed missing edge offset
PetscSection: Must initialize remoteOffsets
DMPlex: Fixed cohesive cell creation for clamped boundaries - Explicitly tag cross-edges (edges with two clamped endpoints) with 2 in boundary label - Add cross-edge to vertices when looking for things that need split points replaced - Remove extra check for boundary vertices
DMPlex: Fixes for marking cohesive submesh - Do not mark points as split which are in the boundary label - Mark boundary points from label as unsplit
DMPlex: Changing meaning of boundary label in DMPlexLabelCohesiveComplete() - Now it marks vertices already present in the original label - We mark these as unsplit, and ignore their stars - Remove old code
DMPlex: Fixed stupid typo
DMPlex: Fixed refinement to respect embedded manifolds
DMPlex: Fixed types in DMPlexOrient()
DMPlex: Fixed initialization in DMPlexLabelCohesiveComplete()
DMPlex: Fixed logic in hybrid cell tagging and added missing declaration
DMPlex Fixed huge error with last change set - Default cellHeight is 0
DMPlex: Allow cellHeight argument for DMPlexMarkBoundaryFaces()
DMPlex: Added blabel argument to DMPlexLabelCohesiveComplete() - Lets user designate the boundary of a dividing surface - Added GetSurfaceSize_Static()
DMPlex: Fix for DMPlexOrient() - I was not symmetrizing the orientation graph on processes
DMPlex: Added DMPlexAddConeSize()
DMPlex: Fixed memory overwrite at depth 0 for viewing
PC+Doc: Fixed FieldSplit doc
Sys: Replace Malloc1() in multiple mallocs (fix size)
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| a188d78d | 17-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
removed use of block mapping in moab dxx code and documentation |
| 45b6f7e9 | 17-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
removed blocked versions of ISLocalToGlobalMapping in Vec and Mat
the single ISLocalToGlobalMapping supports ISLocalToGlobalMappingApply and ISLocalToGlobalMappingApplyBlock
still some fixes need for
removed blocked versions of ISLocalToGlobalMapping in Vec and Mat
the single ISLocalToGlobalMapping supports ISLocalToGlobalMappingApply and ISLocalToGlobalMappingApplyBlock
still some fixes need for these extensive changes
show more ...
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| f0413b6f | 16-May-2014 |
Barry Smith <bsmith@mcs.anl.gov> |
added bs argument to ISLocalToGlobalMappingCreate(), not yet used for bs > 1 |
| 164dedda | 15-May-2014 |
Matthew G. Knepley <knepley@gmail.com> |
PetscSection: Must initialize remoteOffsets |