write restarts from stream runs and shock adapt

this may have some interleaving with previous commit

memory allocs for serial, Euler, and for parts with no boundary condition codes

this may have some interplay with IO but hopefully minimal

deallocate point2ilwork in serial runs

silence warnings

support posix files in sub-directories

return 1 if the posix file failed to open

MPI_BYTE not MPI_CHAR

compute the group from the rank

small cleanup

add a few assertions, add commas to header string

modify readilwork test for new command line args

using mpi io

write ilwork data in parallel... in a very crude way

silence warning - use c style comments

add argument to phIOreadIlwork to control writing of array

Merge branch 'master' of github.com:PHASTA/phasta

mkdir module to replace system(...) call from fortran

Compressible code gets an update on what it writes in terms of convergence history. Columns are, step, time, ||L^-1 b||, db, ||b|| db Krylov Sum_Krylov

Merge branch 'master' of github.com:PHASTA/phasta

My incomplete work in the itrdrv.f cleanup seems to have lead to a long stint of broken svLS code but now it produces the same results it did prior to the cleanup e.g., ab5b07a458969128644e941ce150fa

My incomplete work in the itrdrv.f cleanup seems to have lead to a long stint of broken svLS code but now it produces the same results it did prior to the cleanup e.g., ab5b07a458969128644e941ce150fa049270fdf1 on March 13, 2016

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remove unused memory region and pointers

Remove unused/outdated headers

Serial PETSc was broken for cases with periodicity and for scalar solves but now fixed for both

incompressible: fix build with svls solver and gcc5

Bug fixed when probes requested

Bug fixed with probes and xyzts.dat