330         loTriFactor->csrMat->column_indices = new THRUSTINTARRAY32(nzLower);  in MatSeqAIJHIPSPARSEBuildILULowerTriMatrix()
334         loTriFactor->csrMat->column_indices->assign(AjLo, AjLo + nzLower);  in MatSeqAIJHIPSPARSEBuildILULowerTriMatrix()
341 …loTriFactor->csrMat->row_offsets->data().get(), loTriFactor->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEBuildILULowerTriMatrix()
346 …loTriFactor->csrMat->row_offsets->data().get(), loTriFactor->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEBuildILULowerTriMatrix()
447         upTriFactor->csrMat->column_indices = new THRUSTINTARRAY32(nzUpper);  in MatSeqAIJHIPSPARSEBuildILUUpperTriMatrix()
450         upTriFactor->csrMat->column_indices->assign(AjUp, AjUp + nzUpper);  in MatSeqAIJHIPSPARSEBuildILUUpperTriMatrix()
457 …upTriFactor->csrMat->row_offsets->data().get(), upTriFactor->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEBuildILUUpperTriMatrix()
462 …upTriFactor->csrMat->row_offsets->data().get(), upTriFactor->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEBuildILUUpperTriMatrix()
608         upTriFactor->csrMat->column_indices = new THRUSTINTARRAY32(a->nz);  in MatSeqAIJHIPSPARSEBuildICCTriMatrices()
611         upTriFactor->csrMat->column_indices->assign(AjUp, AjUp + a->nz);  in MatSeqAIJHIPSPARSEBuildICCTriMatrices()
621 …upTriFactor->csrMat->row_offsets->data().get(), upTriFactor->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEBuildICCTriMatrices()
626 …upTriFactor->csrMat->row_offsets->data().get(), upTriFactor->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEBuildICCTriMatrices()
654         loTriFactor->csrMat->column_indices = new THRUSTINTARRAY32(a->nz);  in MatSeqAIJHIPSPARSEBuildICCTriMatrices()
657         loTriFactor->csrMat->column_indices->assign(AjUp, AjUp + a->nz);  in MatSeqAIJHIPSPARSEBuildICCTriMatrices()
664 …loTriFactor->csrMat->row_offsets->data().get(), loTriFactor->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEBuildICCTriMatrices()
669 …loTriFactor->csrMat->row_offsets->data().get(), loTriFactor->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEBuildICCTriMatrices()
821   loTriFactorT->csrMat->column_indices = new THRUSTINTARRAY32(loTriFactorT->csrMat->num_entries);  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
836 …     loTriFactor->csrMat->column_indices->data().get(), loTriFactorT->csrMat->values->data().get(),  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
838 …oTriFactorT->csrMat->row_offsets->data().get(), loTriFactorT->csrMat->column_indices->data().get(),  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
841 …loTriFactorT->csrMat->column_indices->data().get(), loTriFactorT->csrMat->row_offsets->data().get(…  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
851 …TriFactorT->csrMat->row_offsets->data().get(), loTriFactorT->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
856 …TriFactorT->csrMat->row_offsets->data().get(), loTriFactorT->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
894   upTriFactorT->csrMat->column_indices = new THRUSTINTARRAY32(upTriFactorT->csrMat->num_entries);  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
908 …     upTriFactor->csrMat->column_indices->data().get(), upTriFactorT->csrMat->values->data().get(),  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
910 …pTriFactorT->csrMat->row_offsets->data().get(), upTriFactorT->csrMat->column_indices->data().get(),  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
913 …upTriFactorT->csrMat->column_indices->data().get(), upTriFactorT->csrMat->row_offsets->data().get(…  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
923 …TriFactorT->csrMat->row_offsets->data().get(), upTriFactorT->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
928 …TriFactorT->csrMat->row_offsets->data().get(), upTriFactorT->csrMat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEAnalyzeTransposeForSolve()
981       matrixT->column_indices = new THRUSTINTARRAY32(a->nz);  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
987 …, matrixT->num_entries, matrixT->row_offsets->data().get(), matrixT->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
997       temp->column_indices = new THRUSTINTARRAY32(a->nz);  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1000 …, temp->values->data().get(), temp->row_offsets->data().get(), temp->column_indices->data().get())…  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1007       tempT->column_indices = new THRUSTINTARRAY32(a->nz);  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1010 …, temp->values->data().get(), temp->row_offsets->data().get(), temp->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1011 …tempT->column_indices->data().get(), tempT->row_offsets->data().get(), HIPSPARSE_ACTION_NUMERIC, i…  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1017 …empT->values->data().get(), tempT->row_offsets->data().get(), tempT->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1025         if (tempT->column_indices) delete (THRUSTINTARRAY32 *)tempT->column_indices;  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1031         if (temp->column_indices) delete (THRUSTINTARRAY32 *)temp->column_indices;  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1042     PetscCheck(matrix->column_indices, PETSC_COMM_SELF, PETSC_ERR_GPU, "Missing CsrMatrix cols");  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1046     PetscCheck(matrixT->column_indices, PETSC_COMM_SELF, PETSC_ERR_GPU, "Missing CsrMatrixT cols");  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1062 …data().get(), hipsparsestruct->rowoffsets_gpu->data().get(), matrix->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1063 …matrixT->column_indices->data().get(), matrixT->row_offsets->data().get(), HIPSPARSE_ACTION_NUMERI…  in MatSeqAIJHIPSPARSEFormExplicitTranspose()
1117 …TriFactorT->csrMat->row_offsets->data().get(), upTriFactorT->csrMat->column_indices->data().get(),…  in MatSolveTranspose_SeqAIJHIPSPARSE()
1121 …TriFactorT->csrMat->row_offsets->data().get(), loTriFactorT->csrMat->column_indices->data().get(),…  in MatSolveTranspose_SeqAIJHIPSPARSE()
1161 …TriFactorT->csrMat->row_offsets->data().get(), upTriFactorT->csrMat->column_indices->data().get(),…  in MatSolveTranspose_SeqAIJHIPSPARSE_NaturalOrdering()
1165 …TriFactorT->csrMat->row_offsets->data().get(), loTriFactorT->csrMat->column_indices->data().get(),…  in MatSolveTranspose_SeqAIJHIPSPARSE_NaturalOrdering()
1199 …loTriFactor->csrMat->row_offsets->data().get(), loTriFactor->csrMat->column_indices->data().get(),…  in MatSolve_SeqAIJHIPSPARSE()
1203 …upTriFactor->csrMat->row_offsets->data().get(), upTriFactor->csrMat->column_indices->data().get(),…  in MatSolve_SeqAIJHIPSPARSE()
1232 …loTriFactor->csrMat->row_offsets->data().get(), loTriFactor->csrMat->column_indices->data().get(),…  in MatSolve_SeqAIJHIPSPARSE_NaturalOrdering()
1236 …upTriFactor->csrMat->row_offsets->data().get(), upTriFactor->csrMat->column_indices->data().get(),…  in MatSolve_SeqAIJHIPSPARSE_NaturalOrdering()
2001     *j = matrix->column_indices->data().get();  in MatSeqAIJGetCSRAndMemType_SeqAIJHIPSPARSE()
2082           mat->column_indices = new THRUSTINTARRAY32(nnz);  in MatSeqAIJHIPSPARSECopyToGPU()
2085           mat->column_indices->assign(a->j, a->j + nnz);  in MatSeqAIJHIPSPARSECopyToGPU()
2091 …at->num_cols, mat->num_entries, mat->row_offsets->data().get(), mat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSECopyToGPU()
2100           mat->column_indices = new THRUSTINTARRAY32(nnz);  in MatSeqAIJHIPSPARSECopyToGPU()
2103           mat->column_indices->assign(a->j, a->j + nnz);  in MatSeqAIJHIPSPARSECopyToGPU()
2109 …scr, mat->values->data().get(), mat->row_offsets->data().get(), mat->column_indices->data().get(),…  in MatSeqAIJHIPSPARSECopyToGPU()
2115             if (mat->column_indices) delete (THRUSTINTARRAY32 *)mat->column_indices;  in MatSeqAIJHIPSPARSECopyToGPU()
2308 …ols, csrmat->num_entries, csrmat->row_offsets->data().get(), csrmat->column_indices->data().get(),…  in MatProductNumeric_SeqAIJHIPSPARSE_SeqDENSEHIP()
2501 …, Acsr->values->data().get(), Acsr->row_offsets->data().get(), Acsr->column_indices->data().get(),…  in MatProductNumeric_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2502 …, Bcsr->values->data().get(), Bcsr->row_offsets->data().get(), Bcsr->column_indices->data().get(),…  in MatProductNumeric_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2503                                           Ccsr->column_indices->data().get()));  in MatProductNumeric_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2651     Ccsr->column_indices = new THRUSTINTARRAY32(c->nz);  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2668     Bcsr->column_indices = cBcsr->column_indices;  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2678 …>num_cols, Bcsr->num_entries, Bcsr->row_offsets->data().get(), Bcsr->column_indices->data().get(),…  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2741     Ccsr->column_indices = new THRUSTINTARRAY32(c->nz);  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2747 …srSetPointers(Cmat->matDescr, Ccsr->row_offsets->data().get(), Ccsr->column_indices->data().get(),…  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2778   Ccsr->column_indices = new THRUSTINTARRAY32(c->nz);  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2782 …srSetPointers(Cmat->matDescr, Ccsr->row_offsets->data().get(), Ccsr->column_indices->data().get(),…  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2787 …at->descr, Acsr->num_entries, Acsr->row_offsets->data().get(), Acsr->column_indices->data().get(),…  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2788 …Bcsr->row_offsets->data().get(), Bcsr->column_indices->data().get(), Cmat->descr, Ccsr->row_offset…  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2790   Ccsr->column_indices = new THRUSTINTARRAY32(c->nz);  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2799 …, Acsr->values->data().get(), Acsr->row_offsets->data().get(), Acsr->column_indices->data().get(),…  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2800 …, Bcsr->values->data().get(), Bcsr->row_offsets->data().get(), Bcsr->column_indices->data().get(),…  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2801                                           Ccsr->column_indices->data().get()));  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2813     THRUSTINTARRAY jj(Ccsr->column_indices->size());  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2815     jj = *Ccsr->column_indices;  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2818 …PetscCallHIP(hipMemcpy(c->j, jj.data().get(), Ccsr->column_indices->size() * sizeof(PetscInt), hip…  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2823 …PetscCallHIP(hipMemcpy(c->j, Ccsr->column_indices->data().get(), Ccsr->column_indices->size() * si…  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
2835 …PetscCall(PetscLogGpuToCpu((Ccsr->column_indices->size() + Ccsr->row_offsets->size()) * sizeof(Pet…  in MatProductSymbolic_SeqAIJHIPSPARSE_SeqAIJHIPSPARSE()
3121 …scr, mat->values->data().get(), mat->row_offsets->data().get(), mat->column_indices->data().get(),…  in MatMultAddKernel_SeqAIJHIPSPARSE()
3286 … = thrust::equal(thrust::device, csry->column_indices->begin(), csry->column_indices->end(), csrx-…  in MatAXPY_SeqAIJHIPSPARSE()
3302 …a, cx->mat->descr, x->nz, ax, csrx->row_offsets->data().get(), csrx->column_indices->data().get(),…  in MatAXPY_SeqAIJHIPSPARSE()
3303 …csry->column_indices->data().get(), cy->mat->descr, ay, csry->row_offsets->data().get(), csry->col…  in MatAXPY_SeqAIJHIPSPARSE()
3306 …a, cx->mat->descr, x->nz, ax, csrx->row_offsets->data().get(), csrx->column_indices->data().get(),…  in MatAXPY_SeqAIJHIPSPARSE()
3307 …csry->column_indices->data().get(), cy->mat->descr, ay, csry->row_offsets->data().get(), csry->col…  in MatAXPY_SeqAIJHIPSPARSE()
3313 …a, cx->mat->descr, x->nz, ax, csrx->row_offsets->data().get(), csrx->column_indices->data().get(),…  in MatAXPY_SeqAIJHIPSPARSE()
3314 …csry->column_indices->data().get(), cy->mat->descr, ay, csry->row_offsets->data().get(), csry->col…  in MatAXPY_SeqAIJHIPSPARSE()
3575     delete (*mat)->column_indices;  in CsrMatrix_Destroy()
3865   if (j) *j = csr->column_indices->data().get();  in MatSeqAIJHIPSPARSEGetIJ()
4148     Annz                 = (PetscInt)Acsr->column_indices->size();  in MatSeqAIJHIPSPARSEMergeMats()
4149     Bnnz                 = (PetscInt)Bcsr->column_indices->size();  in MatSeqAIJHIPSPARSEMergeMats()
4152     Ccsr->column_indices = new THRUSTINTARRAY32(c->nz);  in MatSeqAIJHIPSPARSEMergeMats()
4184 …    auto Bcib  = thrust::make_transform_iterator(Bcsr->column_indices->begin(), Shift(A->cmap->n));  in MatSeqAIJHIPSPARSEMergeMats()
4185       auto Bcie  = thrust::make_transform_iterator(Bcsr->column_indices->end(), Shift(A->cmap->n));  in MatSeqAIJHIPSPARSEMergeMats()
4187 …auto Azb   = thrust::make_zip_iterator(thrust::make_tuple(Acoo->begin(), Acsr->column_indices->beg…  in MatSeqAIJHIPSPARSEMergeMats()
4188 …auto Aze   = thrust::make_zip_iterator(thrust::make_tuple(Acoo->end(), Acsr->column_indices->end()…  in MatSeqAIJHIPSPARSEMergeMats()
4191 …auto Czb   = thrust::make_zip_iterator(thrust::make_tuple(Ccoo->begin(), Ccsr->column_indices->beg…  in MatSeqAIJHIPSPARSEMergeMats()
4211 …>num_cols, Ccsr->num_entries, Ccsr->row_offsets->data().get(), Ccsr->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEMergeMats()
4231         CcsrT->column_indices         = new THRUSTINTARRAY32(c->nz);  in MatSeqAIJHIPSPARSEMergeMats()
4245         auto cT = CcsrT->column_indices->begin();  in MatSeqAIJHIPSPARSEMergeMats()
4246         if (AT) cT = thrust::copy(AcsrT->column_indices->begin(), AcsrT->column_indices->end(), cT);  in MatSeqAIJHIPSPARSEMergeMats()
4247         if (BT) thrust::copy(BcsrT->column_indices->begin(), BcsrT->column_indices->end(), cT);  in MatSeqAIJHIPSPARSEMergeMats()
4263 …m_cols, CcsrT->num_entries, CcsrT->row_offsets->data().get(), CcsrT->column_indices->data().get(),…  in MatSeqAIJHIPSPARSEMergeMats()
4274       THRUSTINTARRAY jj(Ccsr->column_indices->size());  in MatSeqAIJHIPSPARSEMergeMats()
4276       jj = *Ccsr->column_indices;  in MatSeqAIJHIPSPARSEMergeMats()
4278 …PetscCallHIP(hipMemcpy(c->j, jj.data().get(), Ccsr->column_indices->size() * sizeof(PetscInt), hip…  in MatSeqAIJHIPSPARSEMergeMats()
4281 …PetscCallHIP(hipMemcpy(c->j, Ccsr->column_indices->data().get(), Ccsr->column_indices->size() * si…  in MatSeqAIJHIPSPARSEMergeMats()
4283 …PetscCall(PetscLogGpuToCpu((Ccsr->column_indices->size() + Ccsr->row_offsets->size()) * sizeof(Pet…  in MatSeqAIJHIPSPARSEMergeMats()