1 #pragma once 2 3 #include <petscdmmoab.h> /*I "petscdmmoab.h" I*/ 4 #include "petsc/private/dmimpl.h" 5 6 /* This is an integer map, in addition it is also a container class 7 Design points: 8 - Low storage is the most important design point 9 - We want flexible insertion and deletion 10 - We can live with O(log) query, but we need O(1) iteration over strata 11 */ 12 typedef struct { 13 moab::Interface *mbiface; 14 #ifdef MOAB_HAVE_MPI 15 moab::ParallelComm *pcomm; 16 #endif 17 moab::Range *tag_range; /* entities to which this tag applies */ 18 moab::Tag tag; 19 PetscInt tag_size; 20 PetscBool new_tag; 21 PetscBool is_global_vec; 22 PetscBool is_native_vec; 23 Vec local; 24 } Vec_MOAB; 25 26 namespace moab 27 { 28 class NestedRefine; 29 } // namespace moab 30 31 typedef struct { 32 /* common data */ 33 PetscInt dim; /* Current topological dimension handled by DMMoab */ 34 PetscInt bs; /* Block size that controls the strided vs interlaced configuration in discrete systems - 35 This affects the layout and hence the degree-of-freedom of the different fields (components) */ 36 37 PetscInt *dfill, *ofill; /* The diagonal and off-diagonal block-fill to indicate coupling between components */ 38 PetscInt *materials; /* The array that caches the material data for each element */ 39 40 PetscInt numFields; 41 const char **fieldNames; 42 43 /* level specific data */ 44 PetscInt n, nloc, nghost; /* Number of global, local only and shared vertices for current partition */ 45 PetscInt nele, neleloc, neleghost; /* Number of global, local only and shared elements for current partition */ 46 PetscInt *gsindices; /* Global ID for all local+ghosted vertices */ 47 PetscInt *gidmap, *lidmap; /* Global ID indices, Local ID indices, field-based local map, field-based global map */ 48 PetscInt seqstart, seqend; /* Local start and end entity IDs for vertices */ 49 PetscInt vstart, vend; /* Global start and end index for distributed Vec */ 50 PetscInt nghostrings; /* Number of ghost ring layers */ 51 PetscInt gminmax[2], lminmax[2]; /* Local and global min/max in the ID sequence */ 52 PetscInt refct; 53 54 /* store the mapping information */ 55 ISLocalToGlobalMapping ltog_map; 56 VecScatter ltog_sendrecv; 57 58 /* MOAB objects cached internally in DMMoab */ 59 60 /* common data */ 61 moab::Interface *mbiface; /* MOAB Interface/Core reference */ 62 #ifdef MOAB_HAVE_MPI 63 moab::ParallelComm *pcomm; /* MOAB ParallelComm reference */ 64 #endif 65 moab::Tag ltog_tag; /* MOAB supports "global id" tags */ 66 moab::Tag material_tag; /* MOAB supports "material_set" tags */ 67 PetscBool icreatedinstance; /* true if DM created moab instance internally, will destroy instance in DMDestroy */ 68 69 /* store options to customize DMMoab I/O */ 70 PetscInt rw_dbglevel; 71 PetscBool partition_by_rank; 72 char extra_read_options[PETSC_MAX_PATH_LEN]; 73 char extra_write_options[PETSC_MAX_PATH_LEN]; 74 MoabReadMode read_mode; 75 MoabWriteMode write_mode; 76 77 /* level specific data */ 78 moab::Range *vowned, *vghost, *vlocal; /* Vertex entities: strictly owned, strictly ghosted, owned+ghosted */ 79 moab::Range *elocal, *eghost; /* Topological dimensional entities: strictly owned, strictly ghosted */ 80 moab::Range *bndyvtx, *bndyfaces, *bndyelems; /* Boundary entities: skin vertices, skin faces and elements on the outer skin */ 81 moab::EntityHandle fileset; /* The Global set to which all local entities belong */ 82 83 /* level hierarchy in MOAB */ 84 moab::NestedRefine *hierarchy; 85 PetscInt nhlevels, hlevel; 86 moab::EntityHandle *hsets; 87 88 /* Sub-mesh level data-strucuture */ 89 DM *parent; 90 91 } DM_Moab; 92 93 typedef struct { 94 DM_Moab *pdmmoab; 95 moab::NestedRefine *hierarchy; 96 PetscInt nhlevels, hlevel; 97 moab::EntityHandle *hsets; 98 } SubDM_MOAB; 99