| /petsc/src/sys/classes/viewer/impls/hdf5/ |
| H A D | hdf5v.c | 71 PetscViewer_HDF5 *hdf5 = (PetscViewer_HDF5 *)v->data; in PetscViewerSetFromOptions_HDF5() local
75 …get 2 dimensions in HDF5", "PetscViewerHDF5SetBaseDimension2", hdf5->basedimension2, &hdf5->basedi… in PetscViewerSetFromOptions_HDF5()
76 …to be written in single precision", "PetscViewerHDF5SetSPOutput", hdf5->spoutput, &hdf5->spoutput,… in PetscViewerSetFromOptions_HDF5()
82 …f5_compress", "Enable compression", "PetscViewerHDF5SetCompress", hdf5->compress, &hdf5->compress,… in PetscViewerSetFromOptions_HDF5()
89 PetscViewer_HDF5 *hdf5 = (PetscViewer_HDF5 *)v->data; in PetscViewerView_HDF5() local
93 if (hdf5->filename) PetscCall(PetscViewerASCIIPrintf(viewer, "Filename: %s\n", hdf5->filename)); in PetscViewerView_HDF5()
94 …(viewer, "Vectors with blocksize 1 saved as 2D datasets: %s\n", PetscBools[hdf5->basedimension2])); in PetscViewerView_HDF5()
95 …scViewerASCIIPrintf(viewer, "Enforce single precision storage: %s\n", PetscBools[hdf5->spoutput])); in PetscViewerView_HDF5()
98 …PetscCall(PetscViewerASCIIPrintf(viewer, "Default timestepping: %s\n", PetscBools[hdf5->defTimeste… in PetscViewerView_HDF5()
99 PetscCall(PetscViewerASCIIPrintf(viewer, "Compression: %s\n", PetscBools[hdf5->compress])); in PetscViewerView_HDF5()
[all …]
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| /petsc/config/BuildSystem/config/packages/ |
| H A D | cgns.py | 18 self.hdf5 = framework.require('config.packages.HDF5', self)
20 self.deps = [self.hdf5]
30 if self.hdf5.directory:
31 args.append('-DHDF5_ROOT:PATH={}'.format(self.hdf5.directory))
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| H A D | ascem-io.py | 20 self.hdf5 = framework.require('config.packages.HDF5',self)
21 self.deps = [self.mpi,self.hdf5]
27 if self.hdf5.include:
28 …'+self.updatePackageCFlags(self.getCompilerFlags())+'" HDF5_INCLUDE_DIR="'+self.hdf5.include[0]+'"'
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| H A D | Chombo.py | 22 self.hdf5 = self.framework.require('config.packages.HDF5',self)
25 self.deps = [self.mpi,self.blasLapack,self.hdf5]
60 g.write('HDFINCFLAGS='+self.headers.toString(self.hdf5.include)+'\n')
61 g.write('HDFLIBFLAGS='+self.libraries.toString(self.hdf5.lib)+'\n')
62 g.write('HDFMPIINCFLAGS='+self.headers.toString(self.hdf5.include)+'\n')
63 g.write('HDFMPILIBFLAGS='+self.libraries.toString(self.hdf5.lib)+'\n')
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| H A D | alquimia.py | 23 self.hdf5 = framework.require('config.packages.HDF5', self)
25 self.deps = [self.mpi, self.hdf5, self.pflotran]
56 plibs = self.hdf5.lib
67 …ETSC_INCLUDE_DIRS="'+os.path.join(self.petscdir.dir,'include')+';'+';'.join(self.hdf5.include)+'"')
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| H A D | MOAB.py | 31 self.hdf5 = framework.require('config.packages.HDF5', self)
39 …self.odeps = [self.szlib,self.eigen,self.hdf5,self.netcdf,self.metis,self.parmetis,self.p…
58 if self.hdf5.found:
59 args.append('--with-hdf5="'+self.hdf5.directory+'"')
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| H A D | ADIOS.py | 19 self.hdf5 = framework.require('config.packages.HDF5', self)
24 self.odeps = [self.hdf5,self.netcdf,self.zlib]
47 if self.hdf5.found:
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| H A D | SAMRAI.py | 17 self.hdf5 = framework.require('config.packages.HDF5', self)
19 self.deps = [self.mpi, self.hdf5, self.silo]
48 args.append('--with-hdf5='+self.hdf5.directory)
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| H A D | ExodusII.py | 24 self.hdf5 = framework.require('config.packages.HDF5', self)
25 self.deps = [self.hdf5,self.netcdf,self.pnetcdf]
69 args.append('-DHDF5_DIR:PATH='+self.hdf5.directory)
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| H A D | Firedrake.py | 26 self.hdf5 = framework.require('config.packages.HDF5',self)
41 …asLapack,self.petsc4py,self.slepc,self.slepc4py,self.fftw,self.hwloc,self.hdf5,self.metis,self.pne…
48 self.env['HDF5_DIR'] = self.hdf5.directory
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| H A D | Trilinos.py | 32 self.hdf5 = framework.require('config.packages.HDF5',self)
45 ….superlu,self.superlu_dist,self.parmetis,self.metis,self.ptscotch,self.boost,self.netcdf,self.hdf5]
120 if not self.hdf5.found:
256 if self.hdf5.found:
258 args.append('-DTPL_HDF5_INCLUDE_DIRS="'+';'.join(self.hdf5.include)+'"')
259 args.append('-DTPL_HDF5_LIBRARIES="'+self.toStringNoDupes(self.hdf5.dlib)+'"')
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| H A D | netCDF.py | 22 self.hdf5 = framework.require('config.packages.HDF5', self)
24 self.deps = [self.mpi, self.hdf5,self.zlib]
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| H A D | FEniCS-DOLFINx.py | 31 self.hdf5 = framework.require('config.packages.HDF5',self)
38 …self.deps = [self.mpi4py,self.petsc4py,self.boost,self.basix,self.ffcx,self.hdf5,self…
46 args.append('-DHDF5_DIR=' + self.hdf5.include[0])
55 for l in self.hdf5.lib:
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| /petsc/src/vec/is/utils/hdf5/ |
| H A D | hdf5io.c | 20 PetscViewer_HDF5 *hdf5 = (PetscViewer_HDF5 *)viewer->data; in PetscViewerHDF5CheckTimestepping_Internal() local
24 …PetscCall(PetscViewerHDF5ReadAttribute(viewer, name, "timestepping", PETSC_BOOL, &hdf5->defTimeste… in PetscViewerHDF5CheckTimestepping_Internal()
25 if (timestepping != hdf5->timestepping) { in PetscViewerHDF5CheckTimestepping_Internal()
29 …s Timestepping pushed? %s", group, name, PetscBools[timestepping], PetscBools[hdf5->timestepping]); in PetscViewerHDF5CheckTimestepping_Internal()
36 PetscViewer_HDF5 *hdf5 = (PetscViewer_HDF5 *)viewer->data; in PetscViewerHDF5ReadInitialize_Private() local
47 if (!hdf5->horizontal) { in PetscViewerHDF5ReadInitialize_Private()
49 PetscCall(PetscViewerHDF5HasAttribute(viewer, name, "MATLAB_class", &hdf5->horizontal)); in PetscViewerHDF5ReadInitialize_Private()
77 PetscViewer_HDF5 *hdf5 = (PetscViewer_HDF5 *)viewer->data; in PetscViewerHDF5ReadSizes_Private() local
148 if (hdf5->timestepping) ++ctx->lenInd; in PetscViewerHDF5ReadSizes_Private()
162 if (hdf5->horizontal) { in PetscViewerHDF5ReadSizes_Private()
[all …]
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| /petsc/src/dm/impls/swarm/tests/ |
| H A D | makefile | 12 …scfe_default_quadrature_order ${ORDER} -dm_view hdf5:sol.h5 -fhat_view hdf5:sol.h5::append -rhs_vi…
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| /petsc/src/vec/vec/tests/output/ |
| H A D | ex51_2.out | 1 writing vector in hdf5 to vector.dat ...
2 reading vector in hdf5 from vector.dat ...
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| H A D | ex100cu_4.out | 25 writing vector in hdf5 to vector.dat ...
26 reading vector in hdf5 from vector.dat ...
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| H A D | ex100cu_6.out | 27 writing vector in hdf5 to vector.dat ...
28 reading vector in hdf5 from vector.dat ...
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| /petsc/src/vec/vec/tutorials/output/ |
| H A D | ex10_4.out | 25 writing vector in hdf5 to vector.dat ...
26 reading vector in hdf5 from vector.dat ...
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| H A D | ex10_6.out | 27 writing vector in hdf5 to vector.dat ...
28 reading vector in hdf5 from vector.dat ...
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| /petsc/src/sys/classes/viewer/tutorials/output/ |
| H A D | ex2_2a.out | 2 type: hdf5
4 Filename: my.hdf5
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| H A D | ex2_2b.out | 2 type: hdf5
4 Filename: my.hdf5
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| H A D | ex2_2b_alt.out | 3 type: hdf5
5 Filename: my.hdf5
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| /petsc/src/mat/impls/dense/seq/hdf5/ |
| H A D | densehdf5.c | 12 PetscViewer_HDF5 *hdf5; in MatLoad_Dense_HDF5() local
32 hdf5 = (PetscViewer_HDF5 *)viewer->data; in MatLoad_Dense_HDF5()
34 hdf5->horizontal = PETSC_TRUE; in MatLoad_Dense_HDF5()
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| /petsc/src/ksp/ksp/tutorials/ |
| H A D | ex27.c | 16 PetscBool hdf5 = PETSC_FALSE; in VecLoadIfExists_Private() local
19 PetscCall(PetscObjectTypeCompare((PetscObject)fd, PETSCVIEWERHDF5, &hdf5)); in VecLoadIfExists_Private()
20 if (hdf5) { in VecLoadIfExists_Private()
55 PetscBool hdf5 = PETSC_FALSE; in main() local
87 PetscCall(PetscOptionsGetBool(NULL, NULL, "-hdf5", &hdf5, NULL)); in main()
115 if (hdf5) { in main()
191 if (hdf5) { in main()
|