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/petsc/config/BuildSystem/config/packages/
H A DTriangle.py122 … && make libtriangle.'+self.setCompilers.AR_LIB_SUFFIX+' && make clean', timeout=2500, log = self.…
126 …age.executeShellCommand('mkdir -p '+os.path.join(self.installDir,'lib'), timeout=2500, log=self.lo…
127 …executeShellCommand('mkdir -p '+os.path.join(self.installDir,'include'), timeout=2500, log=self.lo…
128 …age.executeShellCommand('mkdir -p '+os.path.join(self.installDir,'bin'), timeout=2500, log=self.lo…
129 …elf.setCompilers.AR_LIB_SUFFIX)+' '+os.path.join(self.installDir,'lib'), timeout=60, log = self.lo…
130 … -f '+os.path.join(self.packageDir, 'src', 'triangle.h')+' '+includeDir, timeout=60, log = self.lo…
133 …flags+' -DNO_PETSC_MALLOC src/triangle.c -o triangle -lm && make clean', timeout=2500, log = self.…
136 …oin(self.packageDir,'triangle')+' '+os.path.join(self.installDir,'bin'), timeout=60, log = self.lo…
H A Dhpl.py73 …clean && make libhpl.'+self.setCompilers.AR_LIB_SUFFIX+' && make clean', timeout=250, log = self.l…
77 …kage.executeShellCommand('mkdir -p '+os.path.join(self.installDir,'lib'), timeout=25, log=self.log)
78 ….executeShellCommand('mkdir -p '+os.path.join(self.installDir,'include'), timeout=25, log=self.log)
79 …elf.setCompilers.AR_LIB_SUFFIX)+' '+os.path.join(self.installDir,'lib'), timeout=60, log = self.lo…
80 …'cp -f '+os.path.join(self.packageDir, 'include', '*.h')+' '+includeDir, timeout=60, log = self.lo…
H A DPython.py41 …elf.pyexe,'-c','import sysconfig;print(sysconfig.get_python_version())'],timeout=60, log = self.lo…
46 …mand([self.pyexe,'-c','import setuptools;print(setuptools.__version__)'],timeout=60, log = self.lo…
52 …ShellCommand([self.pyexe,'-c','import cython;print(cython.__version__)'],timeout=60, log = self.lo…
62 …ig.package.Package.executeShellCommand(self.pyexe + ' -c "import numpy"',timeout=60, log = self.lo…
H A Dspai.py44 …age.executeShellCommand('mkdir -p '+os.path.join(self.installDir,'lib'), timeout=2500, log=self.lo…
45 …ake && cp -f libspai.a '+os.path.join(self.installDir,'lib','libspai.a'),timeout=250, log = self.l…
46 …ckageDir,'lib')+' && cp -f *.h '+os.path.join(self.installDir,'include'),timeout=250, log = self.l…
48 …etCompilers.RANLIB+' '+os.path.join(self.installDir,'lib')+'/libspai.a', timeout=250, log = self.l…
H A DTetGen.py79 …age.executeShellCommand('mkdir -p '+os.path.join(self.installDir,'lib'), timeout=2500, log=self.lo…
80 …executeShellCommand('mkdir -p '+os.path.join(self.installDir,'include'), timeout=2500, log=self.lo…
81 …AGS="' + predcflags + '" tetlib && cp *.a ' + libDir + ' && rm *.a *.o', timeout=2500, log = self.…
83 …S="' + predcflags + '" tetgen && cp tetgen ' + binDir + ' && rm tetgen', timeout=2500, log = self.…
86 …mmand('cp -f '+os.path.join(self.packageDir, 'tetgen.h')+' '+includeDir, timeout=60, log = self.lo…
H A DMAGMA.py189 …g.package.Package.executeShellCommand('make clean', cwd=self.packageDir, timeout=60, log = self.lo…
196 …d(self.make.make_jnp + self.makerulename + codegen, cwd=self.packageDir, timeout=2500, log = self.…
207 …ecuteShellCommand(self.make.make + ' install_dirs', cwd=self.packageDir, timeout=2500, log = self.…
208 ….executeShellCommand(self.make.make + ' pkgconfig', cwd=self.packageDir, timeout=2500, log = self.…
209 …lCommand('cp '+os.path.join(self.packageDir,'include','*.h')+' '+incDir, timeout=100, log=self.log)
210 …ommand('cp '+os.path.join(self.packageDir,'include','*.mod')+' '+incDir, timeout=100, log=self.log)
211 …mmand('cp '+os.path.join(self.packageDir,'lib','libmagma.*')+' '+libDir, timeout=100, log=self.log)
213 …ge.executeShellCommand(self.make.make + ' install', cwd=self.packageDir, timeout=2500, log = self.…
H A DKS.py111 … clean && make libks.'+self.setCompilers.AR_LIB_SUFFIX+' && make clean', timeout=2500, log = self.…
115 …age.executeShellCommand('mkdir -p '+os.path.join(self.installDir,'lib'), timeout=2500, log=self.lo…
116 …executeShellCommand('mkdir -p '+os.path.join(self.installDir,'include'), timeout=2500, log=self.lo…
117 …elf.setCompilers.AR_LIB_SUFFIX)+' '+os.path.join(self.installDir,'lib'), timeout=60, log = self.lo…
118 ….join(self.packageDir, 'src', 'KolmogorovSmirnovDist.h')+' '+includeDir, timeout=60, log = self.lo…
H A DZoltan.py64 …igure.executeShellCommand('rm -rf '+packageDir+' && mkdir '+packageDir, timeout=2000, log = self.…
67 …Configure.executeShellCommand('cd '+packageDir+' && ../configure '+args, timeout=2000, log = self.…
73 …xecuteShellCommand('cd '+packageDir+' && '+self.make.make+' everything', timeout=6000, log = self.…
75 …e.executeShellCommand('cd '+packageDir+' && '+self.make.make+' install', timeout=300, log = self.l…
H A Dlibflame.py51 …mand(os.path.join('.',self.configureName)+' '+args, cwd=self.packageDir, timeout=2000, log = self.…
78 …figure.executeShellCommand(self.make.make+' clean', cwd=self.packageDir, timeout=200, log = self.l…
79 …ase.Configure.executeShellCommand(pmake+' V=1 all', cwd=self.packageDir, timeout=6000, log = self.…
81 …gure.executeShellCommand(self.make.make+' install', cwd=self.packageDir, timeout=1000, log = self.…
H A Dboost.py39 config.base.Configure.executeShellCommand(cmd, timeout=6000, log=self.log)
76 …out, err, ret = config.base.Configure.executeShellCommand(bootstrap_cmd, timeout=6000, log=self.lo…
79 … out, err, ret = config.base.Configure.executeShellCommand(build_cmd, timeout=6000, log=self.log)
82 … out, err, ret = config.base.Configure.executeShellCommand(install_cmd, timeout=6000, log=self.log)
H A Dtchem.py46 …Package.executeShellCommand(['./configure'] + args, cwd=self.packageDir, timeout=300, log = self.l…
51 …onfig.package.Package.executeShellCommand(['make'], cwd=self.packageDir, timeout=500, log = self.l…
57 ], timeout=500, log = self.log)
H A Dsprng.py55 …age.executeShellCommand('mkdir -p '+os.path.join(self.installDir,'lib'), timeout=2500, log=self.lo…
56 …executeShellCommand('mkdir -p '+os.path.join(self.installDir,'include'), timeout=2500, log=self.lo…
57 …&& cp -f include/*.h '+os.path.join(self.installDir,self.includedir,''), timeout=2500, log = self.…
H A Dpflotran.py63 …d('cd '+self.packageDir+' && '+PARCH+' '+PDIR+' ./configure all '+PREFIX,timeout=60, log = self.lo…
67 …kage.GNUPackage.executeShellCommand('cd '+self.packageDir+' && make all',timeout=1000, log = self.…
71 ….GNUPackage.executeShellCommand('cd '+self.packageDir+' && make install',timeout=100, log = self.l…
H A DpARMS.py78 …output,err,ret = config.package.Package.executeShellCommand('mkdir -p '+libDir, timeout=2500, log=…
79 …output,err,ret = config.package.Package.executeShellCommand('mkdir -p '+incDir, timeout=2500, log=…
80 …l && make OBJ3="" && cp -f include/*.h '+incDir +' && cp lib/* '+libDir, timeout=2500, log = self.…
H A DGLVis.py72 …'+self.make.make_jnp+' serial '+mfem_flags, cwd=self.packageDir+'/mfem', timeout=2500, log = self.…
73 …f.make.make_jnp+' GLVIS_CONFIG_MK=glvis_config.mk', cwd=self.packageDir, timeout=2500, log = self.…
80 ], cwd=self.packageDir, timeout=60, log = self.log)
H A Dradau5.py25 …&& make AR=ar FC=\''+self.getCompiler()+' '+self.getCompilerFlags()+'\'',timeout=2500,log = self.l…
29 …oin(self.packageDir,'libradau5.a')+' '+os.path.join(self.confDir,'lib'), timeout=60, log = self.lo…
H A DChombo.py99 …age.executeShellCommand('mkdir -p '+os.path.join(self.installDir,'lib'), timeout=2500, log=self.lo…
100 …executeShellCommand('mkdir -p '+os.path.join(self.installDir,'include'), timeout=2500, log=self.lo…
103 …xecuteShellCommand('make vars', cwd=os.path.join(self.packageDir,'lib'), timeout=2500, log = self.…
118 ], cwd=os.path.join(self.packageDir,'lib'), timeout=2500, log = self.log)
H A Drevolve.py44 …e.executeShellCommand('cd '+self.packageDir+' && make clean && make lib',timeout=500, log = self.l…
45 …ge.Package.executeShellCommand('cd '+self.packageDir+' && make install ',timeout=250, log = self.l…
H A DBLIS.py92 … config.package.Package.executeShellCommand(args, cwd=self.packageDir, timeout=60, log=self.log)
97 …ackage.executeShellCommand(self.make.make_jnp_list, cwd=self.packageDir, timeout=500, log=self.log)
98 …eShellCommand(self.make.make_jnp_list + ['install'], cwd=self.packageDir, timeout=30, log=self.log)
H A Dadblaslapack.py37 …ke_jnp_list + ['clean', 'all'], cwd=os.path.join(self.packageDir,'src'), timeout=60, log = self.lo…
44 ], cwd=self.packageDir, timeout=60, log = self.log)
/petsc/config/
H A Dpetsc_harness.sh4 TIMEOUT=60
56 -t ................ Override the default timeout (default=$TIMEOUT sec)
95 t ) TIMEOUT=$OPTARG ;;
115 export MPIEXEC_TIMEOUT=$((TIMEOUT*timeoutfactor))
228 …grep -F -q -s 'APPLICATION TERMINATED WITH THE EXIT STRING: job ending due to timeout' "$2" "$3" |…
229 grep -q -s "Timeout after [0-9]* seconds. Terminating job" "$2" "$3"; then
247 comment="Exceeded timeout limit of $MPIEXEC_TIMEOUT s"
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/classes/
H A D_pool.py18 from ..util._timeout import timeout, TimeoutError
249 @timeout(seconds=10)
293 packet = return_q.get(timeout=1)
361 @timeout(seconds=3)
370 # OK if we timeout, likely there is a problem so this join is a deadlock
383 @timeout(seconds=60)
392 worker.join(timeout=1)
436 exception = self.error_queue.get(timeout=.5)
/petsc/lib/petsc/bin/maint/petsclinter/petsclinter/util/
H A D_timeout.py22 def timeout(seconds: int = 10, error_message: Optional[str] = None) -> Callable[[Callable[_P, _T]],… function
30 the error message to attach to the timeout
/petsc/config/BuildSystem/
H A Dscript.py209 …def executeShellCommand(command, checkCommand = None, timeout = 600.0, log = None, lineLimit = 0, … argument
212 '''The timeout is ignored unless the threads values is nonzero'''
213 …return Script.executeShellCommandSeq([command], checkCommand=checkCommand, timeout=timeout, log=lo…
216 …def executeShellCommandSeq(commandseq, checkCommand = None, timeout = 600.0, log = None, lineLimit… argument
239 log.write('Running Executable with threads to time it out at '+str(timeout)+'\n')
250 thread.join(timeout)
252 error = 'Runaway process exceeded time limit of '+str(timeout)+'\n'
/petsc/config/BuildSystem/config/
H A Dbase.py474 def preprocess(self, codeStr, timeout = 600.0): argument
487 …et) = Configure.executeShellCommand(command, checkCommand = report, timeout = timeout, log = self.…
497 def checkPreprocess(self, codeStr, timeout = 600.0): argument
500 (out, err, ret) = self.preprocess(codeStr, timeout = timeout)
646 …, cleanup = 1, defaultOutputArg = '', executor = None,linkLanguage=None, timeout = 60, threads = 1… argument
673 …r, status) = Configure.executeShellCommand(command, log = self.log, timeout = timeout, threads = t…
691 … = '', cleanup = 1, defaultArg = '', executor = None, linkLanguage=None, timeout = 60, threads = 1… argument
693 …des, body, cleanup, defaultArg, executor,linkLanguage=linkLanguage, timeout = timeout, threads = t…

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