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/petsc/lib/petsc/bin/
H A Dpetsc_gen_xdmf.py245 h5 = h5py.File(hdfFilename, 'r')
246 if 'viz' in h5 and 'geometry' in h5['viz']:
248 geom = h5['viz']['geometry']
251 geom = h5['geometry']
252 if 'viz' in h5 and 'topology' in h5['viz']:
254 topo = h5['viz']['topology']
257 topo = h5['topology']
258 if 'viz' in h5 and 'hybrid_topology' in h5['viz']:
260 htopo = h5['viz']['hybrid_topology']
278 if 'time' in h5:
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/petsc/src/ts/tutorials/output/
H A Dex30_restart_simplex_nsize-2_dm_refine_hierarchy-0.out2 rank 0 saving to test_ex30_seq_0.h5
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H A Dex30_restart_refonly_nsize-2.out2 rank 0 saving to test_ex30_seq_0.h5
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H A Dex30_restart_nsize-2_dm_refine_hierarchy-1.out2 rank 0 saving to test_ex30_seq_0.h5
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H A Dex30_restart_simplex_refonly_nsize-2.out2 rank 0 saving to test_ex30_seq_0.h5
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H A Dex30_restart_nsize-2_dm_refine_hierarchy-0.out2 rank 0 saving to test_ex30_seq_0.h5
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H A Dex30_restart_simplex_refonly_nsize-1.out2 rank 0 saving to test_ex30_seq_0.h5
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H A Dex30_restart_simplex_nsize-1_dm_refine_hierarchy-0.out2 rank 0 saving to test_ex30_seq_0.h5
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H A Dex30_restart_nsize-1_dm_refine_hierarchy-0.out2 rank 0 saving to test_ex30_seq_0.h5
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H A Dex30_restart_nsize-1_dm_refine_hierarchy-1.out2 rank 0 saving to test_ex30_seq_0.h5
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H A Dex30_restart_refonly_nsize-1.out2 rank 0 saving to test_ex30_seq_0.h5
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/petsc/src/dm/impls/swarm/tests/
H A Dmakefile12 …ault_quadrature_order ${ORDER} -dm_view hdf5:sol.h5 -fhat_view hdf5:sol.h5::append -rhs_view hdf5:…
13 -@${PETSC_DIR}/lib/petsc/bin/petsc_gen_xdmf.py sol.h5
/petsc/src/sys/classes/viewer/impls/hdf5/
H A Dhdf5v.c1185 hid_t h5, dataspace, obj, attribute, dtype; in PetscViewerHDF5WriteAttribute() local
1203 PetscCall(PetscViewerHDF5GetFileId(viewer, &h5)); in PetscViewerHDF5WriteAttribute()
1205 PetscCallHDF5Return(obj, H5Oopen, (h5, parentAbsPath, H5P_DEFAULT)); in PetscViewerHDF5WriteAttribute()
1291 hid_t h5, obj, attribute, dtype; in PetscViewerHDF5ReadAttribute() local
1319 PetscCall(PetscViewerHDF5GetFileId(viewer, &h5)); in PetscViewerHDF5ReadAttribute()
1320 PetscCallHDF5Return(obj, H5Oopen, (h5, parentAbsPath, H5P_DEFAULT)); in PetscViewerHDF5ReadAttribute()
1375 static PetscErrorCode PetscViewerHDF5Traverse_Inner_Internal(hid_t h5, const char name[], PetscBool… in PetscViewerHDF5Traverse_Inner_Internal() argument
1381 PetscCallHDF5Return(exists, H5Lexists, (h5, name, H5P_DEFAULT)); in PetscViewerHDF5Traverse_Inner_Internal()
1382 if (exists) PetscCallHDF5Return(exists, H5Oexists_by_name, (h5, name, H5P_DEFAULT)); in PetscViewerHDF5Traverse_Inner_Internal()
1384 PetscCallHDF5Return(group, H5Gcreate2, (h5, name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)); in PetscViewerHDF5Traverse_Inner_Internal()
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/petsc/doc/tutorials/meshing/
H A Dguide_to_subsurface.md39 …rch="dm_impls_plex_tutorials-ex10_1" EXTRA_OPTIONS="-dm_view hdf5:$PETSC_DIR/mesh.h5 -dm_extrude 3"
40 $ $PETSC_DIR/lib/petsc/bin/petsc_gen_xmdf.py mesh.h5
52 …_impls_plex_tutorials-ex10_2" EXTRA_OPTIONS="-dm_view hdf5:$PETSC_DIR/mesh.h5 -dm_partition_view -…
53 $ $PETSC_DIR/lib/petsc/bin/petsc_gen_xmdf.py mesh.h5
92 …_impls_plex_tutorials-ex10_3" EXTRA_OPTIONS="-dm_view hdf5:$PETSC_DIR/mesh.h5 -dm_partition_view -…
93 $ $PETSC_DIR/lib/petsc/bin/petsc_gen_xmdf.py mesh.h5
/petsc/src/vec/vec/tests/
H A Dmakefile10 …-${QUIET}H5OUT=`mktemp -t petsc.h5.XXXXXX`; ${MPIEXEC} -n 1 ${MPIEXEC_TAIL} ./ex47 -filename $${H5…
/petsc/doc/manual/
H A Ddmplex.md396 $ ./myprog -dm_view hdf5:myprog.h5 -vec_view hdf5:myprog.h5::append
401 To save data to "example.h5" file, we can first create a `PetscViewer` of type `PETSCVIEWERHDF5` in…
406 PetscViewerHDF5Open(PETSC_COMM_WORLD, "example.h5", FILE_MODE_WRITE, &viewer);
471 The output file "example.h5" now looks like the following:
474 $ h5dump --contents example.h5
475 HDF5 "example.h5" {
512 $ h5dump -a /dmplex_storage_version example.h5
520 $ h5dump --contents example.h5
521 HDF5 "example.h5" {
559 To load data from "example.h5" file, we create a `PetscViewer`
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/petsc/
H A D.gitignore13 *.h5
/petsc/doc/tutorials/physics/
H A Dguide_to_stokes.md244 … -dm_view hdf5:$PETSC_DIR/sol.h5 -snes_view_solution hdf5:$PETSC_DIR/sol.h5::append -exact_vec_vie…
245 … -dm_view hdf5:$PETSC_DIR/sol.h5 -snes_view_solution hdf5:$PETSC_DIR/sol.h5::append -exact_vec_vie…