xref: /honee/examples/navierstokes.c (revision 60a7e45e7d0ee6b089729fd63c7fa0b9843ffb69)
1ae2b091fSJames Wright // SPDX-FileCopyrightText: Copyright (c) 2017-2024, HONEE contributors.
2ae2b091fSJames Wright // SPDX-License-Identifier: Apache-2.0 OR BSD-2-Clause
3149fb536SJames Wright 
415747f0fSJames Wright //                        HONEE - High-Order Navier-stokes Equation Evaluator
5149fb536SJames Wright // Sample runs:
6149fb536SJames Wright //
7149fb536SJames Wright //     ./navierstokes -ceed /cpu/self -options_file gaussianwave.yml
8149fb536SJames Wright //     ./navierstokes -ceed /gpu/cuda -problem advection -degree 1
9149fb536SJames Wright //
10149fb536SJames Wright 
1115747f0fSJames Wright const char help[] = "HONEE - High-Order Navier-stokes Equation Evaluator\n";
12149fb536SJames Wright 
13149fb536SJames Wright #include <navierstokes.h>
14149fb536SJames Wright #include <petscdevice.h>
15149fb536SJames Wright 
16149fb536SJames Wright #include <ceed.h>
17149fb536SJames Wright #include <petscdmplex.h>
18149fb536SJames Wright #include <petscts.h>
19149fb536SJames Wright 
20149fb536SJames Wright int main(int argc, char **argv) {
2115747f0fSJames Wright   AppCtx      app_ctx;
2215747f0fSJames Wright   ProblemData problem;
2315747f0fSJames Wright   Honee       honee;
2415747f0fSJames Wright   SimpleBC    bc;
2515747f0fSJames Wright   Physics     phys_ctx;
2615747f0fSJames Wright   Units       units;
2715747f0fSJames Wright   MPI_Comm    comm;
2815747f0fSJames Wright 
29149fb536SJames Wright   PetscCall(PetscInitialize(&argc, &argv, NULL, help));
30149fb536SJames Wright 
310c373b74SJames Wright   PetscCall(PetscCalloc1(1, &honee));
3215747f0fSJames Wright   PetscCall(PetscCalloc1(1, &app_ctx));
3315747f0fSJames Wright   PetscCall(PetscCalloc1(1, &problem));
34149fb536SJames Wright   PetscCall(PetscCalloc1(1, &bc));
35149fb536SJames Wright   PetscCall(PetscCalloc1(1, &phys_ctx));
36149fb536SJames Wright   PetscCall(PetscCalloc1(1, &units));
370c373b74SJames Wright   honee->app_ctx           = app_ctx;
380c373b74SJames Wright   honee->units             = units;
390c373b74SJames Wright   honee->phys              = phys_ctx;
40149fb536SJames Wright   problem->set_bc_from_ics = PETSC_TRUE;
4115747f0fSJames Wright   honee->comm = comm = PETSC_COMM_WORLD;
42149fb536SJames Wright 
43149fb536SJames Wright   PetscCall(RegisterLogEvents());
44149fb536SJames Wright 
45149fb536SJames Wright   // ---------------------------------------------------------------------------
46149fb536SJames Wright   // Process command line options
47149fb536SJames Wright   // ---------------------------------------------------------------------------
48149fb536SJames Wright   // -- Process general command line options
49149fb536SJames Wright   PetscCall(ProcessCommandLineOptions(comm, app_ctx, bc));
500c373b74SJames Wright   PetscCall(BoundaryConditionSetUp(honee, problem, app_ctx, bc));
51149fb536SJames Wright 
52149fb536SJames Wright   // ---------------------------------------------------------------------------
53149fb536SJames Wright   // Initialize libCEED
54149fb536SJames Wright   // ---------------------------------------------------------------------------
55149fb536SJames Wright   // -- Initialize backend
56149fb536SJames Wright   Ceed ceed;
57*60a7e45eSJames Wright   {  // Initialize Ceed
58149fb536SJames Wright     PetscCheck(CeedInit(app_ctx->ceed_resource, &ceed) == CEED_ERROR_SUCCESS, comm, PETSC_ERR_LIB, "Ceed initialization failed");
590c373b74SJames Wright     honee->ceed = ceed;
60149fb536SJames Wright     PetscCheck(CeedSetErrorHandler(ceed, CeedErrorStore) == CEED_ERROR_SUCCESS, comm, PETSC_ERR_LIB, "Setting libCEED error handler failed");
61149fb536SJames Wright 
62*60a7e45eSJames Wright     {  // For SYCL backend, get stream handle from PETSc
63149fb536SJames Wright       const char *resource;
64149fb536SJames Wright       PetscCallCeed(ceed, CeedGetResource(ceed, &resource));
65149fb536SJames Wright       if (strstr(resource, "/gpu/sycl")) {
66149fb536SJames Wright         PetscDeviceContext dctx;
67149fb536SJames Wright         PetscCall(PetscDeviceContextGetCurrentContext(&dctx));
68149fb536SJames Wright         void *stream_handle;
69149fb536SJames Wright         PetscCall(PetscDeviceContextGetStreamHandle(dctx, &stream_handle));
70149fb536SJames Wright         PetscCallCeed(ceed, CeedSetStream(ceed, stream_handle));
71149fb536SJames Wright       }
72149fb536SJames Wright     }
73*60a7e45eSJames Wright   }
74149fb536SJames Wright 
75149fb536SJames Wright   // ---------------------------------------------------------------------------
76149fb536SJames Wright   // Set up global mesh
77149fb536SJames Wright   // ---------------------------------------------------------------------------
78149fb536SJames Wright   // -- Create DM
79149fb536SJames Wright   DM      dm;
80149fb536SJames Wright   VecType vec_type = NULL;
81149fb536SJames Wright   MatType mat_type = NULL;
82*60a7e45eSJames Wright   CeedMemType mem_type_backend;
83*60a7e45eSJames Wright   PetscCallCeed(ceed, CeedGetPreferredMemType(ceed, &mem_type_backend));
84*60a7e45eSJames Wright 
85149fb536SJames Wright   switch (mem_type_backend) {
86149fb536SJames Wright     case CEED_MEM_HOST:
87149fb536SJames Wright       vec_type = VECSTANDARD;
88149fb536SJames Wright       break;
89149fb536SJames Wright     case CEED_MEM_DEVICE: {
90149fb536SJames Wright       const char *resolved;
91149fb536SJames Wright       PetscCallCeed(ceed, CeedGetResource(ceed, &resolved));
92149fb536SJames Wright       if (strstr(resolved, "/gpu/cuda")) vec_type = VECCUDA;
93149fb536SJames Wright       else if (strstr(resolved, "/gpu/hip")) vec_type = VECKOKKOS;
94149fb536SJames Wright       else if (strstr(resolved, "/gpu/sycl")) vec_type = VECKOKKOS;
95149fb536SJames Wright       else vec_type = VECSTANDARD;
96149fb536SJames Wright     }
97149fb536SJames Wright   }
98149fb536SJames Wright   if (strstr(vec_type, VECCUDA)) mat_type = MATAIJCUSPARSE;
99149fb536SJames Wright   else if (strstr(vec_type, VECKOKKOS)) mat_type = MATAIJKOKKOS;
100149fb536SJames Wright   else mat_type = MATAIJ;
101149fb536SJames Wright   PetscCall(CreateDM(comm, problem, mat_type, vec_type, &dm));
1020c373b74SJames Wright   honee->dm = dm;
1030c373b74SJames Wright   PetscCall(DMSetApplicationContext(dm, honee));
104149fb536SJames Wright 
10515747f0fSJames Wright   {  // Run problem setup function
106149fb536SJames Wright     PetscErrorCode (*p)(ProblemData, DM, void *, SimpleBC);
107149fb536SJames Wright     PetscCall(PetscFunctionListFind(app_ctx->problems, app_ctx->problem_name, &p));
108149fb536SJames Wright     PetscCheck(p, PETSC_COMM_SELF, 1, "Problem '%s' not found", app_ctx->problem_name);
1090c373b74SJames Wright     PetscCall((*p)(problem, dm, &honee, bc));
110149fb536SJames Wright   }
111149fb536SJames Wright 
112149fb536SJames Wright   // -- Set up DM
113149fb536SJames Wright   PetscCall(SetUpDM(dm, problem, app_ctx->degree, app_ctx->q_extra, bc, phys_ctx));
114149fb536SJames Wright 
115149fb536SJames Wright   // -- Refine DM for high-order viz
1160c373b74SJames Wright   if (app_ctx->viz_refine) PetscCall(VizRefineDM(dm, honee, problem, bc, phys_ctx));
117149fb536SJames Wright 
118149fb536SJames Wright   // ---------------------------------------------------------------------------
119149fb536SJames Wright   // Create solution vectors
120149fb536SJames Wright   // ---------------------------------------------------------------------------
121149fb536SJames Wright   // -- Set up global state vector Q
122149fb536SJames Wright   Vec Q;
123149fb536SJames Wright   PetscCall(DMCreateGlobalVector(dm, &Q));
124149fb536SJames Wright   PetscCall(VecZeroEntries(Q));
1250c373b74SJames Wright   PetscCall(DMCreateLocalVector(dm, &honee->Q_loc));
1260c373b74SJames Wright   PetscCall(DMCreateLocalVector(dm, &honee->Q_dot_loc));
1270c373b74SJames Wright   PetscCall(VecZeroEntries(honee->Q_dot_loc));
128149fb536SJames Wright 
129149fb536SJames Wright   // ---------------------------------------------------------------------------
130149fb536SJames Wright   // Set up libCEED
131149fb536SJames Wright   // ---------------------------------------------------------------------------
132149fb536SJames Wright   // -- Set up libCEED objects
133e3663b90SJames Wright   PetscCall(SetupLibceed(ceed, dm, honee, app_ctx, problem, bc));
134149fb536SJames Wright 
135149fb536SJames Wright   // ---------------------------------------------------------------------------
136149fb536SJames Wright   // Set up ICs
137149fb536SJames Wright   // ---------------------------------------------------------------------------
138149fb536SJames Wright   // -- Fix multiplicity for ICs
139e3663b90SJames Wright   PetscCall(ICs_FixMultiplicity(dm, honee, honee->Q_loc, Q, 0.0));
140149fb536SJames Wright 
141149fb536SJames Wright   // ---------------------------------------------------------------------------
142149fb536SJames Wright   // Record boundary values from initial condition
143149fb536SJames Wright   // ---------------------------------------------------------------------------
144149fb536SJames Wright   // -- This overrides DMPlexInsertBoundaryValues().
145149fb536SJames Wright   //    We use this for the main simulation DM because the reference DMPlexInsertBoundaryValues() is very slow on the GPU due to extra device-to-host
146149fb536SJames Wright   //    communication. If we disable this, we should still get the same results due to the problem->bc function, but with potentially much slower
147149fb536SJames Wright   //    execution.
148149fb536SJames Wright   if (problem->set_bc_from_ics) {
1490c373b74SJames Wright     PetscCall(SetBCsFromICs(dm, Q, honee->Q_loc));
150149fb536SJames Wright   }
151149fb536SJames Wright 
152149fb536SJames Wright   // ---------------------------------------------------------------------------
153149fb536SJames Wright   // Gather initial Q values in case of continuation of simulation
154149fb536SJames Wright   // ---------------------------------------------------------------------------
155149fb536SJames Wright   // -- Set up initial values from binary file
156481d14cbSJames Wright   if (app_ctx->use_continue_file) {
157d114cdedSJames Wright     PetscCall(HoneeLoadInitialCondition(app_ctx->cont_file, &app_ctx->cont_steps, &app_ctx->cont_time, Q));
158149fb536SJames Wright   }
159149fb536SJames Wright 
160149fb536SJames Wright   // -- Zero Q_loc
1610c373b74SJames Wright   PetscCall(VecZeroEntries(honee->Q_loc));
162149fb536SJames Wright 
163149fb536SJames Wright   // ---------------------------------------------------------------------------
164149fb536SJames Wright   // TS: Create, setup, and solve
165149fb536SJames Wright   // ---------------------------------------------------------------------------
166149fb536SJames Wright   TS          ts;
167149fb536SJames Wright   PetscScalar final_time;
1680c373b74SJames Wright   PetscCall(TSSolve_NS(dm, honee, app_ctx, phys_ctx, problem, &Q, &final_time, &ts));
169149fb536SJames Wright 
170149fb536SJames Wright   // ---------------------------------------------------------------------------
171149fb536SJames Wright   // Post-processing
172149fb536SJames Wright   // ---------------------------------------------------------------------------
173e3663b90SJames Wright   PetscCall(PostProcess(ts, dm, problem, honee, Q, final_time));
174149fb536SJames Wright 
175149fb536SJames Wright   // ---------------------------------------------------------------------------
176149fb536SJames Wright   // Destroy libCEED objects
177149fb536SJames Wright   // ---------------------------------------------------------------------------
178149fb536SJames Wright 
179e3663b90SJames Wright   PetscCall(TurbulenceStatisticsDestroy(honee));
1800c373b74SJames Wright   PetscCall(NodalProjectionDataDestroy(honee->grad_velo_proj));
1810c373b74SJames Wright   PetscCall(SgsDDDataDestroy(honee->sgs_dd_data));
1820c373b74SJames Wright   PetscCall(DifferentialFilterDataDestroy(honee->diff_filter));
1830c373b74SJames Wright   PetscCall(SGS_DD_TrainingDataDestroy(honee->sgs_dd_train));
1840c373b74SJames Wright   PetscCall(SmartSimDataDestroy(honee->smartsim));
185e816a7e4SJames Wright   PetscCall(QDataClearStoredData());
1860c373b74SJames Wright   PetscCall(DivDiffFluxProjectionDataDestroy(honee->diff_flux_proj));
187149fb536SJames Wright 
188149fb536SJames Wright   // -- Vectors
189e3663b90SJames Wright   PetscCallCeed(ceed, CeedVectorDestroy(&honee->x_coord));
1900c373b74SJames Wright   PetscCallCeed(ceed, CeedVectorDestroy(&honee->q_ceed));
1910c373b74SJames Wright   PetscCallCeed(ceed, CeedVectorDestroy(&honee->q_dot_ceed));
1920c373b74SJames Wright   PetscCallCeed(ceed, CeedVectorDestroy(&honee->g_ceed));
193149fb536SJames Wright 
194149fb536SJames Wright   // -- Bases
195e3663b90SJames Wright   PetscCallCeed(ceed, CeedBasisDestroy(&honee->basis_q));
196e3663b90SJames Wright   PetscCallCeed(ceed, CeedBasisDestroy(&honee->basis_x));
197149fb536SJames Wright 
198149fb536SJames Wright   // -- Restrictions
199e3663b90SJames Wright   PetscCallCeed(ceed, CeedElemRestrictionDestroy(&honee->elem_restr_q));
200e3663b90SJames Wright   PetscCallCeed(ceed, CeedElemRestrictionDestroy(&honee->elem_restr_x));
201149fb536SJames Wright 
202149fb536SJames Wright   // Destroy QFunction contexts after using
203149fb536SJames Wright   // ToDo: Simplify tracked libCEED objects, smaller struct
204149fb536SJames Wright   {
205e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_inflow.qfctx));
206e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_inflow_jacobian.qfctx));
207e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_outflow.qfctx));
208e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_outflow_jacobian.qfctx));
209e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_freestream.qfctx));
210e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_freestream_jacobian.qfctx));
211e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_slip.qfctx));
212e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_slip_jacobian.qfctx));
213e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->ics.qfctx));
214e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_vol_rhs.qfctx));
215e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_vol_ifunction.qfctx));
216e07531f7SJames Wright     PetscCallCeed(ceed, CeedQFunctionContextDestroy(&problem->apply_vol_ijacobian.qfctx));
217149fb536SJames Wright   }
218149fb536SJames Wright 
219149fb536SJames Wright   // -- Operators
220e3663b90SJames Wright   PetscCall(OperatorApplyContextDestroy(honee->op_ics_ctx));
2210c373b74SJames Wright   PetscCall(OperatorApplyContextDestroy(honee->op_rhs_ctx));
2220c373b74SJames Wright   PetscCall(OperatorApplyContextDestroy(honee->op_strong_bc_ctx));
2230c373b74SJames Wright   PetscCallCeed(ceed, CeedOperatorDestroy(&honee->op_ifunction));
224149fb536SJames Wright 
225149fb536SJames Wright   // -- Ceed
226149fb536SJames Wright   PetscCheck(CeedDestroy(&ceed) == CEED_ERROR_SUCCESS, comm, PETSC_ERR_LIB, "Destroying Ceed object failed");
227149fb536SJames Wright 
228149fb536SJames Wright   if (app_ctx->test_type != TESTTYPE_NONE) {
229149fb536SJames Wright     PetscInt num_options_left = 0;
230149fb536SJames Wright     PetscCall(PetscOptionsLeftGet(NULL, &num_options_left, NULL, NULL));
231149fb536SJames Wright     PetscCheck(num_options_left == 0, PETSC_COMM_WORLD, -1,
232149fb536SJames Wright                "There are unused options. This is not allowed. See error message for the unused options (or use -options_left directly)");
233149fb536SJames Wright   }
234149fb536SJames Wright 
235149fb536SJames Wright   // ---------------------------------------------------------------------------
236149fb536SJames Wright   // Clean up PETSc
237149fb536SJames Wright   // ---------------------------------------------------------------------------
238149fb536SJames Wright   // -- Vectors
239149fb536SJames Wright   PetscCall(VecDestroy(&Q));
2400c373b74SJames Wright   PetscCall(VecDestroy(&honee->Q_loc));
2410c373b74SJames Wright   PetscCall(VecDestroy(&honee->Q_dot_loc));
242149fb536SJames Wright 
2430c373b74SJames Wright   PetscCall(KSPDestroy(&honee->mass_ksp));
244149fb536SJames Wright 
245149fb536SJames Wright   // -- Matrices
2460c373b74SJames Wright   PetscCall(MatDestroy(&honee->interp_viz));
2470c373b74SJames Wright   PetscCall(MatDestroy(&honee->mat_ijacobian));
248149fb536SJames Wright 
249149fb536SJames Wright   // -- DM
250149fb536SJames Wright   PetscCall(DMDestroy(&dm));
2510c373b74SJames Wright   PetscCall(DMDestroy(&honee->dm_viz));
252149fb536SJames Wright 
253149fb536SJames Wright   // -- TS
254149fb536SJames Wright   PetscCall(TSDestroy(&ts));
255149fb536SJames Wright 
256149fb536SJames Wright   // -- Function list
257149fb536SJames Wright   PetscCall(PetscFunctionListDestroy(&app_ctx->problems));
258149fb536SJames Wright 
259149fb536SJames Wright   PetscCall(PetscFree(app_ctx->amat_type));
260149fb536SJames Wright   PetscCall(PetscFree(app_ctx->wall_forces.walls));
261a29281c9SJames Wright   PetscCall(PetscViewerDestroy(&app_ctx->wall_forces.viewer));
262a29281c9SJames Wright   PetscCall(PetscViewerDestroy(&app_ctx->turb_spanstats_viewer));
263149fb536SJames Wright 
264149fb536SJames Wright   // -- Structs
265149fb536SJames Wright   for (PetscInt i = 0; i < problem->num_bc_defs; i++) {
266149fb536SJames Wright     PetscCall(BCDefinitionDestroy(&problem->bc_defs[i]));
267149fb536SJames Wright   }
268149fb536SJames Wright   PetscCall(PetscFree(problem->bc_defs));
269149fb536SJames Wright   PetscCall(PetscFree(units));
2700c373b74SJames Wright   PetscCall(PetscFree(honee));
271149fb536SJames Wright   PetscCall(PetscFree(problem));
272149fb536SJames Wright   PetscCall(PetscFree(bc));
273149fb536SJames Wright   PetscCall(PetscFree(phys_ctx));
274149fb536SJames Wright   PetscCall(PetscFree(app_ctx));
275e3663b90SJames Wright   PetscCall(PetscFree(honee));
276149fb536SJames Wright   PetscCall(PetscFree(problem));
277149fb536SJames Wright 
278149fb536SJames Wright   return PetscFinalize();
279149fb536SJames Wright }
28015747f0fSJames Wright 
28115747f0fSJames Wright // ---------- Test Cases ----------
28215747f0fSJames Wright 
28315747f0fSJames Wright //TESTARGS(name="Flat Plate STG",only="cpu") -ceed {ceed_resource} -options_file examples/flatplate_STG.yaml -dm_plex_box_faces 3,63,3 -dm_plex_box_upper -3.082,2.4,.00726 -ts_max_steps 1 -test_type solver -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-flatplate-STG.bin
28415747f0fSJames Wright //TESTARGS(name="Advection 2D, boundary layer IC",only="cpu") -ceed {ceed_resource} -test_type solver -options_file examples/advection_bl.yaml -dm_plex_box_faces 3,3 -ts_max_steps 0 -advection_ic_bl_height_factor 0.5 -compare_final_state_atol 1e-12 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-boundary-layer-ic.bin
28515747f0fSJames Wright //TESTARGS(name="Advection 2D, implicit square wave, direct div(F_diff)") -ceed {ceed_resource} -test_type solver -options_file examples/advection_wave.yaml -snes_mf -snes_fd -ts_type alpha -dm_plex_box_faces 5,5 -ts_max_steps 5 -diffusion_coeff 5e-3 -div_diff_flux_projection_method direct -compare_final_state_atol 1e-12 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-wave-square-direct_divdiff.bin
28615747f0fSJames Wright //TESTARGS(name="Advection 2D, explicit square wave, indirect div(F_diff)") -ceed {ceed_resource} -test_type solver -options_file examples/advection_wave.yaml -ts_max_steps 5 -dm_plex_box_faces 5,5 -diffusion_coeff 1e-2 -Ctau_d 2 -div_diff_flux_projection_method indirect -compare_final_state_atol 1e-12 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-wave-square-indirect_divdiff.bin
28715747f0fSJames Wright //TESTARGS(name="Advection 2D, sine wave IC",only="cpu") -ceed {ceed_resource} -test_type solver -options_file examples/advection_wave.yaml -ts_max_steps 0 -dm_plex_box_faces 3,3 -advection_ic_wave_type sine -compare_final_state_atol 1e-12 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-wave-sine.bin
28815747f0fSJames Wright //TESTARGS(name="Newtonian and Riemann Solver Unit Tests",only="cpu") -ceed {ceed_resource} -test_type solver -options_file examples/gaussianwave.yaml -compare_final_state_atol 1e100 -compare_final_state_filename tests/output/fluids-navierstokes-gaussianwave-IDL-entropy.bin -dm_plex_box_faces 5,5,1 -ts_max_steps 0 -newtonian_unit_tests -riemann_solver_unit_tests
28915747f0fSJames Wright //TESTARGS(name="Gaussian Wave, IDL and Entropy variables") -ceed {ceed_resource} -test_type solver -options_file examples/gaussianwave.yaml -compare_final_state_atol 2e-11 -compare_final_state_filename tests/output/fluids-navierstokes-gaussianwave-IDL-entropy.bin -state_var entropy -dm_plex_box_faces 5,5,1 -ts_max_steps 5 -idl_decay_time 2e-3 -idl_length 0.25 -idl_start 0 -idl_pressure 70
29015747f0fSJames Wright //TESTARGS(name="Blasius, SGS DataDriven Sequential Torch",only="torch") -ceed {ceed_resource} -options_file tests/blasius_stgtest.yaml -sgs_model_type data_driven -sgs_model_dd_leakyrelu_alpha 0.3 -sgs_model_dd_parameter_dir examples/dd_sgs_data -ts_dt 2e-9 -state_var primitive -ksp_rtol 1e-12 -snes_rtol 1e-12 -stg_mean_only -stg_fluctuating_IC -test_type solver -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-blasius-sgs-data-driven.bin -sgs_model_dd_implementation sequential_torch -sgs_model_dd_torch_model_path ./tests/createPyTorchModel/NNModel_HIT_fp64_jit.pt
29115747f0fSJames Wright //TESTARGS(name="Blasius, SGS DataDriven Sequential Ceed") -ceed {ceed_resource} -options_file tests/blasius_stgtest.yaml -sgs_model_type data_driven -sgs_model_dd_leakyrelu_alpha 0.3 -sgs_model_dd_parameter_dir examples/dd_sgs_data -ts_dt 2e-9 -state_var primitive -ksp_rtol 1e-12 -snes_rtol 1e-12 -stg_mean_only -stg_fluctuating_IC -test_type solver -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-blasius-sgs-data-driven.bin -sgs_model_dd_implementation sequential_ceed
29215747f0fSJames Wright //TESTARGS(name="Gaussian Wave, explicit, supg, IDL") -ceed {ceed_resource} -test_type solver -options_file examples/gaussianwave.yaml -compare_final_state_atol 1e-8 -compare_final_state_filename tests/output/fluids-navierstokes-gaussianwave-explicit.bin -dm_plex_box_faces 2,2,1 -ts_max_steps 5 -degree 3 -implicit false -ts_type rk -stab supg -state_var conservative -mass_ksp_type gmres -mass_pc_jacobi_type diagonal -idl_decay_time 2e-3 -idl_length 0.25 -idl_start 0 -idl_pressure 70
29315747f0fSJames Wright //TESTARGS(name="Advection 2D, rotation, explicit, supg, consistent mass") -ceed {ceed_resource} -test_type solver -problem advection -degree 3 -dm_plex_box_faces 2,2 -dm_plex_box_lower 0,0 -dm_plex_box_upper 125,125 -bc_wall 1,2,3,4 -wall_comps 4 -units_kilogram 1e-9 -advection_ic_bubble_rc 100. -ts_dt 1e-3 -ts_max_steps 10 -stab supg -Ctaus 0.5 -mass_ksp_type gmres -mass_pc_type vpbjacobi -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-rotation-explicit-stab-supg-consistent-mass.bin
29415747f0fSJames Wright //TESTARGS(name="Advection, skew") -ceed {ceed_resource} -test_type solver -options_file examples/advection.yaml -ts_max_steps 5 -wind_type translation -wind_translation -0.5547002,0.83205029,0 -advection_ic_type skew  -dm_plex_box_faces 2,1,1 -degree 2 -stab supg -stab_tau advdiff_shakib -Ctau_a 4 -Ctau_d 0 -ksp_type gmres -diffusion_coeff 5e-4 -compare_final_state_atol 7e-10 -compare_final_state_filename tests/output/fluids-navierstokes-adv-skew.bin
29515747f0fSJames Wright //TESTARGS(name="Blasius, bc_slip, Indirect Diffusive Flux Projection") -ceed {ceed_resource} -test_type solver -options_file examples/blasius.yaml -ts_max_steps 5 -dm_plex_box_faces 3,20,1 -platemesh_nDelta 10 -platemesh_growth 1.2 -bc_outflow 5 -bc_slip 4 -compare_final_state_atol 2E-11 -compare_final_state_filename tests/output/fluids-navierstokes-blasius-bc_slip_indirect.bin -div_diff_flux_projection_method indirect
29615747f0fSJames Wright //TESTARGS(name="Blasius, bc_slip, Direct Diffusive Flux Projection") -ceed {ceed_resource} -test_type solver -options_file examples/blasius.yaml -ts_max_steps 5 -dm_plex_box_faces 3,20,1 -platemesh_nDelta 10 -platemesh_growth 1.2 -bc_outflow 5 -bc_slip 4 -compare_final_state_atol 2E-11 -compare_final_state_filename tests/output/fluids-navierstokes-blasius-bc_slip.bin -div_diff_flux_projection_method direct
29715747f0fSJames Wright //TESTARGS(name="Advection, rotation, cosine, direct div(F_diff)") -ceed {ceed_resource} -test_type solver -options_file examples/advection.yaml -ts_max_steps 5 -advection_ic_type cosine_hill -dm_plex_box_faces 2,2,1 -diffusion_coeff 5e-3 -div_diff_flux_projection_method direct -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-adv-rotation-cosine.bin
29815747f0fSJames Wright //TESTARGS(name="Gaussian Wave, using MatShell") -ceed {ceed_resource} -test_type solver -options_file examples/gaussianwave.yaml -compare_final_state_atol 1e-8 -compare_final_state_filename tests/output/fluids-navierstokes-gaussianwave-shell.bin -dm_plex_box_faces 2,2,1 -ts_max_steps 5 -degree 3 -amat_type shell -pc_type vpbjacobi -ts_alpha_radius 0.5
29915747f0fSJames Wright //TESTARGS(name="Taylor-Green Vortex IC") -ceed {ceed_resource} -problem taylor_green -test_type solver -dm_plex_dim 3 -dm_plex_box_faces 6,6,6 -ts_max_steps 0 -compare_final_state_atol 1e-12 -compare_final_state_filename tests/output/fluids-navierstokes-taylor-green-IC.bin
30015747f0fSJames Wright //TESTARGS(name="Blasius, SGS DataDriven Fused") -ceed {ceed_resource} -options_file tests/blasius_stgtest.yaml -sgs_model_type data_driven -sgs_model_dd_leakyrelu_alpha 0.3 -sgs_model_dd_parameter_dir examples/dd_sgs_data -ts_dt 2e-9 -state_var primitive -ksp_rtol 1e-12 -snes_rtol 1e-12 -stg_mean_only -stg_fluctuating_IC -test_type solver -compare_final_state_atol 1e-10 -compare_final_state_filename tests/output/fluids-navierstokes-blasius-sgs-data-driven.bin
30115747f0fSJames Wright //TESTARGS(name="Blasius, Anisotropic Differential Filter") -ceed {ceed_resource} -test_type diff_filter -options_file tests/blasius_test.yaml -compare_final_state_atol 5e-10 -compare_final_state_filename tests/output/fluids-navierstokes-blasius_diff_filter_aniso_vandriest.bin -diff_filter_monitor -ts_max_steps 0 -state_var primitive -diff_filter_friction_length 1e-5 -diff_filter_wall_damping_function van_driest -diff_filter_ksp_rtol 1e-8 -diff_filter_grid_based_width -diff_filter_width_scaling 1,0.7,1
30215747f0fSJames Wright //TESTARGS(name="Blasius, Isotropic Differential Filter") -ceed {ceed_resource} -test_type diff_filter -options_file tests/blasius_test.yaml -compare_final_state_atol 2e-12 -compare_final_state_filename tests/output/fluids-navierstokes-blasius_diff_filter_iso.bin -diff_filter_monitor -ts_max_steps 0 -diff_filter_width_scaling 4.2e-5,4.2e-5,4.2e-5 -diff_filter_ksp_atol 1e-14 -diff_filter_ksp_rtol 1e-16
30315747f0fSJames Wright //TESTARGS(name="Gaussian Wave, with IDL") -ceed {ceed_resource} -test_type solver -options_file examples/gaussianwave.yaml -compare_final_state_atol 2e-11 -compare_final_state_filename tests/output/fluids-navierstokes-gaussianwave-IDL.bin -dm_plex_box_faces 5,5,1 -ts_max_steps 5 -idl_decay_time 2e-3 -idl_length 0.25 -idl_start 0 -ts_alpha_radius 0.5 -idl_pressure 70
30415747f0fSJames Wright //TESTARGS(name="Spanwise Turbulence Statistics") -ceed {ceed_resource} -test_type turb_spanstats -options_file tests/stats_test.yaml -compare_final_state_atol 1E-11 -compare_final_state_filename tests/output/fluids-navierstokes-turb-spanstats-stats.bin
30515747f0fSJames Wright //TESTARGS(name="Blasius") -ceed {ceed_resource} -test_type solver -options_file tests/blasius_test.yaml -compare_final_state_atol 2E-11 -compare_final_state_filename tests/output/fluids-navierstokes-blasius.bin
30615747f0fSJames Wright //TESTARGS(name="Blasius, STG Inflow") -ceed {ceed_resource} -test_type solver -options_file tests/blasius_stgtest.yaml -compare_final_state_atol 2E-11 -compare_final_state_filename tests/output/fluids-navierstokes-blasius_STG.bin
30715747f0fSJames Wright //TESTARGS(name="Blasius, STG Inflow, Weak Temperature") -ceed {ceed_resource} -test_type solver -options_file tests/blasius_stgtest.yaml -compare_final_state_atol 1E-11 -compare_final_state_filename tests/output/fluids-navierstokes-blasius_STG_weakT.bin -weakT
30815747f0fSJames Wright //TESTARGS(name="Blasius, Strong STG Inflow") -ceed {ceed_resource} -test_type solver -options_file tests/blasius_stgtest.yaml -compare_final_state_atol 1E-10 -compare_final_state_filename tests/output/fluids-navierstokes-blasius_STG_strongBC.bin -stg_strong true
30915747f0fSJames Wright //TESTARGS(name="Channel") -ceed {ceed_resource} -test_type solver -options_file examples/channel.yaml -compare_final_state_atol 2e-11 -compare_final_state_filename tests/output/fluids-navierstokes-channel.bin -dm_plex_box_faces 5,5,1 -ts_max_steps 5
31015747f0fSJames Wright //TESTARGS(name="Channel, Primitive") -ceed {ceed_resource} -test_type solver -options_file examples/channel.yaml -compare_final_state_atol 2e-11 -compare_final_state_filename tests/output/fluids-navierstokes-channel-prim.bin -dm_plex_box_faces 5,5,1 -ts_max_steps 5 -state_var primitive
31115747f0fSJames Wright //TESTARGS(name="Density Current, explicit") -ceed {ceed_resource} -test_type solver -degree 3 -q_extra 2 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -bc_symmetry_x 5,6 -bc_symmetry_y 3,4 -bc_symmetry_z 1,2 -units_kilogram 1e-9 -center 62.5,62.5,187.5 -rc 100. -thetaC -35. -mu 75 -gravity 0,0,-9.81 -ts_dt 1e-3 -units_meter 1e-2 -units_second 1e-2 -ts_max_steps 10 -compare_final_state_atol 1E-11 -compare_final_state_filename tests/output/fluids-navierstokes-dc-explicit.bin
31215747f0fSJames Wright //TESTARGS(name="Density Current, implicit, no stabilization") -ceed {ceed_resource} -test_type solver -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -bc_symmetry_x 5,6 -bc_symmetry_y 3,4 -bc_symmetry_z 1,2 -units_kilogram 1e-9 -center 62.5,62.5,187.5 -rc 100. -thetaC -35. -mu 75 -gravity 0,0,-9.81 -units_meter 1e-2 -units_second 1e-2 -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -ts_type alpha -ts_max_steps 10 -compare_final_state_atol 5E-4 -compare_final_state_filename tests/output/fluids-navierstokes-dc-implicit-stab-none.bin
31315747f0fSJames Wright //TESTARGS(name="Advection, rotation, implicit, SUPG stabilization") -ceed {ceed_resource} -test_type solver -problem advection -CtauS .3 -stab supg -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -bc_wall 1,2,3,4,5,6 -wall_comps 4 -units_kilogram 1e-9 -advection_ic_bubble_rc 100. -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -compare_final_state_atol 5E-4 -ts_max_steps 10 -compare_final_state_filename tests/output/fluids-navierstokes-adv-rotation-implicit-stab-supg.bin
31415747f0fSJames Wright //TESTARGS(name="Advection, translation, implicit, SU stabilization") -ceed {ceed_resource} -test_type solver -problem advection -CtauS .3 -stab su -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -units_kilogram 1e-9 -advection_ic_bubble_rc 100. -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -wind_type translation -wind_translation .53,-1.33,-2.65 -bc_inflow 1,2,3,4,5,6 -ts_max_steps 10 -compare_final_state_atol 5E-4 -compare_final_state_filename tests/output/fluids-navierstokes-adv-translation-implicit-stab-su.bin
31515747f0fSJames Wright //TESTARGS(name="Advection 2D, rotation, explicit, strong form") -ceed {ceed_resource} -test_type solver -problem advection -strong_form 1 -degree 3 -dm_plex_box_faces 2,2 -dm_plex_box_lower 0,0 -dm_plex_box_upper 125,125 -bc_wall 1,2,3,4 -wall_comps 4 -units_kilogram 1e-9 -advection_ic_bubble_rc 100. -ts_dt 1e-3 -compare_final_state_atol 5E-11 -ts_max_steps 10 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-rotation-explicit-strong.bin
31615747f0fSJames Wright //TESTARGS(name="Advection 2D, rotation, implicit, SUPG stabilization") -ceed {ceed_resource} -test_type solver -problem advection -CtauS .3 -stab supg -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0 -dm_plex_box_upper 125,125 -bc_wall 1,2,3,4 -wall_comps 4 -units_kilogram 1e-9 -advection_ic_bubble_rc 100. -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -ts_max_steps 10 -compare_final_state_atol 5E-4 -compare_final_state_filename tests/output/fluids-navierstokes-adv2d-rotation-implicit-stab-supg.bin
31715747f0fSJames Wright //TESTARGS(name="Euler, implicit") -ceed {ceed_resource} -test_type solver -problem euler_vortex -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -units_meter 1e-4 -units_second 1e-4 -mean_velocity 1.4,-2.,0 -bc_inflow 4,6 -bc_outflow 3,5 -bc_symmetry_z 1,2 -vortex_strength 2 -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -ts_max_steps 10 -compare_final_state_atol 5E-4 -compare_final_state_filename tests/output/fluids-navierstokes-euler-implicit.bin
31815747f0fSJames Wright //TESTARGS(name="Euler, explicit") -ceed {ceed_resource} -test_type solver -problem euler_vortex -degree 3 -q_extra 2 -dm_plex_box_faces 2,2,1 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -units_meter 1e-4 -units_second 1e-4 -mean_velocity 1.4,-2.,0 -bc_inflow 4,6 -bc_outflow 3,5 -bc_symmetry_z 1,2 -vortex_strength 2 -ts_dt 1e-7 -ts_rk_type 5bs -ts_rtol 1e-10 -ts_atol 1e-10 -ts_max_steps 10 -compare_final_state_atol 1E-7 -compare_final_state_filename tests/output/fluids-navierstokes-euler-explicit.bin
31915747f0fSJames Wright //TESTARGS(name="Sod Shocktube, explicit, SU stabilization, y-z-beta shock capturing") -ceed {ceed_resource} -test_type solver -problem shocktube -degree 1 -q_extra 2 -dm_plex_box_faces 50,1,1 -units_meter 1e-2 units_second 1e-2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 1000,20,20 -dm_plex_dim 3 -bc_symmetry_x 5,6 -bc_symmetry_y 3,4 -bc_symmetry_z 1,2 -yzb -stab su -ts_max_steps 10 -compare_final_state_atol 1E-11 -compare_final_state_filename tests/output/fluids-navierstokes-shocktube-explicit-su-yzb.bin
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