162b7942eSJames Wright // Copyright (c) 2017-2023, Lawrence Livermore National Security, LLC and other CEED contributors. 262b7942eSJames Wright // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 362b7942eSJames Wright // 462b7942eSJames Wright // SPDX-License-Identifier: BSD-2-Clause 562b7942eSJames Wright // 662b7942eSJames Wright // This file is part of CEED: http://github.com/ceed 762b7942eSJames Wright 862b7942eSJames Wright #include "../qfunctions/sgs_dd_model.h" 962b7942eSJames Wright 1062b7942eSJames Wright #include <petscdmplex.h> 1162b7942eSJames Wright 1262b7942eSJames Wright #include "../navierstokes.h" 1362b7942eSJames Wright 14c38c977aSJames Wright typedef struct { 15c38c977aSJames Wright CeedElemRestriction elem_restr_grid_aniso, elem_restr_sgs; 16c38c977aSJames Wright CeedVector grid_aniso_ceed; 17ee1455b7SJames Wright CeedQFunctionContext sgsdd_qfctx; 18c38c977aSJames Wright } *SGS_DD_ModelSetupData; 19c38c977aSJames Wright 20c38c977aSJames Wright PetscErrorCode SGS_DD_ModelSetupDataDestroy(SGS_DD_ModelSetupData sgs_dd_setup_data) { 21c38c977aSJames Wright PetscFunctionBeginUser; 22c38c977aSJames Wright CeedElemRestrictionDestroy(&sgs_dd_setup_data->elem_restr_grid_aniso); 23c38c977aSJames Wright CeedElemRestrictionDestroy(&sgs_dd_setup_data->elem_restr_sgs); 24c38c977aSJames Wright CeedVectorDestroy(&sgs_dd_setup_data->grid_aniso_ceed); 25ee1455b7SJames Wright CeedQFunctionContextDestroy(&sgs_dd_setup_data->sgsdd_qfctx); 26c38c977aSJames Wright 27c38c977aSJames Wright PetscCall(PetscFree(sgs_dd_setup_data)); 28c38c977aSJames Wright PetscFunctionReturn(0); 29c38c977aSJames Wright } 30c38c977aSJames Wright 31ee1455b7SJames Wright // @brief Create DM for storing subgrid stress at nodes 32ee1455b7SJames Wright PetscErrorCode SGS_DD_ModelCreateDM(DM dm_source, DM *dm_sgs, PetscInt degree, PetscInt *num_components) { 33ee1455b7SJames Wright PetscFE fe; 34ee1455b7SJames Wright PetscSection section; 35ee1455b7SJames Wright PetscInt dim; 36ee1455b7SJames Wright 37ee1455b7SJames Wright PetscFunctionBeginUser; 38ee1455b7SJames Wright *num_components = 6; 39ee1455b7SJames Wright 40ee1455b7SJames Wright PetscCall(DMClone(dm_source, dm_sgs)); 41ee1455b7SJames Wright PetscCall(DMGetDimension(*dm_sgs, &dim)); 42ee1455b7SJames Wright PetscCall(PetscObjectSetName((PetscObject)*dm_sgs, "Subgrid Stress Projection")); 43ee1455b7SJames Wright 44ee1455b7SJames Wright PetscCall(PetscFECreateLagrange(PETSC_COMM_SELF, dim, *num_components, PETSC_FALSE, degree, PETSC_DECIDE, &fe)); 45ee1455b7SJames Wright PetscCall(PetscObjectSetName((PetscObject)fe, "Subgrid Stress Projection")); 46ee1455b7SJames Wright PetscCall(DMAddField(*dm_sgs, NULL, (PetscObject)fe)); 47ee1455b7SJames Wright PetscCall(DMCreateDS(*dm_sgs)); 48ee1455b7SJames Wright PetscCall(DMPlexSetClosurePermutationTensor(*dm_sgs, PETSC_DETERMINE, NULL)); 49ee1455b7SJames Wright 50ee1455b7SJames Wright PetscCall(DMGetLocalSection(*dm_sgs, §ion)); 51ee1455b7SJames Wright PetscCall(PetscSectionSetFieldName(section, 0, "")); 52ee1455b7SJames Wright PetscCall(PetscSectionSetComponentName(section, 0, 0, "KMSubgridStressXX")); 53ee1455b7SJames Wright PetscCall(PetscSectionSetComponentName(section, 0, 1, "KMSubgridStressYY")); 54ee1455b7SJames Wright PetscCall(PetscSectionSetComponentName(section, 0, 2, "KMSubgridStressZZ")); 55ee1455b7SJames Wright PetscCall(PetscSectionSetComponentName(section, 0, 3, "KMSubgridStressYZ")); 56ee1455b7SJames Wright PetscCall(PetscSectionSetComponentName(section, 0, 4, "KMSubgridStressXZ")); 57ee1455b7SJames Wright PetscCall(PetscSectionSetComponentName(section, 0, 5, "KMSubgridStressXY")); 58ee1455b7SJames Wright 59ee1455b7SJames Wright PetscCall(PetscFEDestroy(&fe)); 60ee1455b7SJames Wright 61ee1455b7SJames Wright PetscFunctionReturn(0); 62ee1455b7SJames Wright }; 63ee1455b7SJames Wright 64ee1455b7SJames Wright // @brief Create CeedOperator to calculate data-drive SGS at nodes 65ee1455b7SJames Wright PetscErrorCode SGS_DD_ModelSetupNodalEvaluation(Ceed ceed, User user, CeedData ceed_data, SGS_DD_ModelSetupData sgs_dd_setup_data) { 66ee1455b7SJames Wright SGS_DD_Data sgs_dd_data = user->sgs_dd_data; 67ee1455b7SJames Wright CeedQFunction qf_multiplicity, qf_sgs_dd_nodal; 68ee1455b7SJames Wright CeedOperator op_multiplicity, op_sgs_dd_nodal; 69ee1455b7SJames Wright CeedInt num_elem, elem_size, num_comp_q, dim, num_qpts_1d, num_comp_grad_velo, num_comp_x, num_comp_grid_aniso; 704b0f6111SJames Wright CeedVector multiplicity, inv_multiplicity; 71ee1455b7SJames Wright CeedElemRestriction elem_restr_inv_multiplicity, elem_restr_grad_velo, elem_restr_sgs; 72ee1455b7SJames Wright 73ee1455b7SJames Wright PetscFunctionBeginUser; 74ee1455b7SJames Wright PetscCall(DMGetDimension(user->dm, &dim)); 75ee1455b7SJames Wright CeedElemRestrictionGetNumComponents(ceed_data->elem_restr_x, &num_comp_x); 76ee1455b7SJames Wright CeedElemRestrictionGetNumComponents(ceed_data->elem_restr_q, &num_comp_q); 77ee1455b7SJames Wright CeedElemRestrictionGetNumComponents(sgs_dd_setup_data->elem_restr_grid_aniso, &num_comp_grid_aniso); 78ee1455b7SJames Wright CeedElemRestrictionGetNumElements(ceed_data->elem_restr_q, &num_elem); 79ee1455b7SJames Wright CeedElemRestrictionGetElementSize(ceed_data->elem_restr_q, &elem_size); 80ee1455b7SJames Wright CeedBasisGetNumQuadraturePoints1D(ceed_data->basis_q, &num_qpts_1d); 81ee1455b7SJames Wright 82ee1455b7SJames Wright { // Get velocity gradient information 83ee1455b7SJames Wright CeedOperatorField op_field; 84ee1455b7SJames Wright CeedOperatorGetFieldByName(user->grad_velo_proj->l2_rhs_ctx->op, "velocity gradient", &op_field); 85ee1455b7SJames Wright CeedOperatorFieldGetElemRestriction(op_field, &elem_restr_grad_velo); 86ee1455b7SJames Wright CeedElemRestrictionGetNumComponents(elem_restr_grad_velo, &num_comp_grad_velo); 87ee1455b7SJames Wright } 88ee1455b7SJames Wright 89*36c6cbc8SJames Wright PetscCall(GetRestrictionForDomain(ceed, sgs_dd_data->dm_sgs, 0, 0, 0, 0, num_qpts_1d, 0, &elem_restr_sgs, NULL, NULL)); 90ee1455b7SJames Wright CeedElemRestrictionCreateVector(elem_restr_sgs, &sgs_dd_data->sgs_nodal_ceed, NULL); 91ee1455b7SJames Wright 92ee1455b7SJames Wright // -- Create inverse multiplicity for correcting nodal assembly 93ee1455b7SJames Wright CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &multiplicity, NULL); 94ee1455b7SJames Wright CeedElemRestrictionGetMultiplicity(ceed_data->elem_restr_q, multiplicity); 95ee1455b7SJames Wright CeedElemRestrictionCreateStrided(ceed, num_elem, elem_size, 1, num_elem * elem_size, CEED_STRIDES_BACKEND, &elem_restr_inv_multiplicity); 96ee1455b7SJames Wright CeedElemRestrictionCreateVector(elem_restr_inv_multiplicity, &inv_multiplicity, NULL); 97ee1455b7SJames Wright 98ee1455b7SJames Wright CeedQFunctionCreateInterior(ceed, 1, InverseMultiplicity, InverseMultiplicity_loc, &qf_multiplicity); 99ee1455b7SJames Wright CeedQFunctionAddInput(qf_multiplicity, "multiplicity", num_comp_q, CEED_EVAL_NONE); 100ee1455b7SJames Wright CeedQFunctionAddOutput(qf_multiplicity, "inverse multiplicity", 1, CEED_EVAL_NONE); 101ee1455b7SJames Wright 102ee1455b7SJames Wright CeedOperatorCreate(ceed, qf_multiplicity, NULL, NULL, &op_multiplicity); 103ee1455b7SJames Wright CeedOperatorSetName(op_multiplicity, "SGS DD Model - Create Multiplicity Scaling"); 104ee1455b7SJames Wright CeedOperatorSetField(op_multiplicity, "multiplicity", ceed_data->elem_restr_q, CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE); 105ee1455b7SJames Wright CeedOperatorSetField(op_multiplicity, "inverse multiplicity", elem_restr_inv_multiplicity, CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE); 106ee1455b7SJames Wright CeedOperatorSetNumQuadraturePoints(op_multiplicity, elem_size); 107ee1455b7SJames Wright 108ee1455b7SJames Wright CeedOperatorApply(op_multiplicity, multiplicity, inv_multiplicity, CEED_REQUEST_IMMEDIATE); 109ee1455b7SJames Wright 110ee1455b7SJames Wright // -- Create operator for SGS DD model nodal evaluation 111ee1455b7SJames Wright switch (user->phys->state_var) { 112ee1455b7SJames Wright case STATEVAR_PRIMITIVE: 113ee1455b7SJames Wright CeedQFunctionCreateInterior(ceed, 1, ComputeSGS_DDAnisotropicNodal_Prim, ComputeSGS_DDAnisotropicNodal_Prim_loc, &qf_sgs_dd_nodal); 114ee1455b7SJames Wright break; 115ee1455b7SJames Wright case STATEVAR_CONSERVATIVE: 116ee1455b7SJames Wright CeedQFunctionCreateInterior(ceed, 1, ComputeSGS_DDAnisotropicNodal_Conserv, ComputeSGS_DDAnisotropicNodal_Conserv_loc, &qf_sgs_dd_nodal); 117ee1455b7SJames Wright break; 118ee1455b7SJames Wright default: 119ee1455b7SJames Wright SETERRQ(PetscObjectComm((PetscObject)user->dm), PETSC_ERR_SUP, 120ee1455b7SJames Wright "Anisotropic data-driven SGS nodal evaluation not available for chosen state variable"); 121ee1455b7SJames Wright } 122ee1455b7SJames Wright 123ee1455b7SJames Wright // Mesh/geometry order and solution basis order may differ, therefore must interpolate 124ee1455b7SJames Wright CeedBasis basis_x_to_q; 125ee1455b7SJames Wright PetscCall(CeedBasisCreateProjection(ceed_data->basis_x, ceed_data->basis_q, &basis_x_to_q)); 126ee1455b7SJames Wright 127ee1455b7SJames Wright CeedQFunctionSetContext(qf_sgs_dd_nodal, sgs_dd_setup_data->sgsdd_qfctx); 128ee1455b7SJames Wright CeedQFunctionAddInput(qf_sgs_dd_nodal, "q", num_comp_q, CEED_EVAL_NONE); 129ee1455b7SJames Wright CeedQFunctionAddInput(qf_sgs_dd_nodal, "x", num_comp_x, CEED_EVAL_INTERP); 130ee1455b7SJames Wright CeedQFunctionAddInput(qf_sgs_dd_nodal, "gradient velocity", num_comp_grad_velo, CEED_EVAL_NONE); 131ee1455b7SJames Wright CeedQFunctionAddInput(qf_sgs_dd_nodal, "anisotropy tensor", num_comp_grid_aniso, CEED_EVAL_NONE); 132ee1455b7SJames Wright CeedQFunctionAddInput(qf_sgs_dd_nodal, "inverse multiplicity", 1, CEED_EVAL_NONE); 133ee1455b7SJames Wright CeedQFunctionAddOutput(qf_sgs_dd_nodal, "km_sgs", sgs_dd_data->num_comp_sgs, CEED_EVAL_NONE); 134ee1455b7SJames Wright 135ee1455b7SJames Wright CeedOperatorCreate(ceed, qf_sgs_dd_nodal, NULL, NULL, &op_sgs_dd_nodal); 136ee1455b7SJames Wright CeedOperatorSetField(op_sgs_dd_nodal, "q", ceed_data->elem_restr_q, CEED_BASIS_COLLOCATED, user->q_ceed); 137ee1455b7SJames Wright CeedOperatorSetField(op_sgs_dd_nodal, "x", ceed_data->elem_restr_x, basis_x_to_q, ceed_data->x_coord); 138ee1455b7SJames Wright CeedOperatorSetField(op_sgs_dd_nodal, "gradient velocity", elem_restr_grad_velo, CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE); 139ee1455b7SJames Wright CeedOperatorSetField(op_sgs_dd_nodal, "anisotropy tensor", sgs_dd_setup_data->elem_restr_grid_aniso, CEED_BASIS_COLLOCATED, 140ee1455b7SJames Wright sgs_dd_setup_data->grid_aniso_ceed); 141ee1455b7SJames Wright CeedOperatorSetField(op_sgs_dd_nodal, "inverse multiplicity", elem_restr_inv_multiplicity, CEED_BASIS_COLLOCATED, inv_multiplicity); 142ee1455b7SJames Wright CeedOperatorSetField(op_sgs_dd_nodal, "km_sgs", elem_restr_sgs, CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE); 143ee1455b7SJames Wright 1444b0f6111SJames Wright PetscCall(OperatorApplyContextCreate(user->grad_velo_proj->dm, sgs_dd_data->dm_sgs, ceed, op_sgs_dd_nodal, NULL, sgs_dd_data->sgs_nodal_ceed, NULL, 1454b0f6111SJames Wright NULL, &sgs_dd_data->op_nodal_evaluation_ctx)); 146ee1455b7SJames Wright 147ee1455b7SJames Wright sgs_dd_setup_data->elem_restr_sgs = elem_restr_sgs; 148ee1455b7SJames Wright 149ee1455b7SJames Wright CeedVectorDestroy(&multiplicity); 150ee1455b7SJames Wright CeedVectorDestroy(&inv_multiplicity); 151ee1455b7SJames Wright CeedBasisDestroy(&basis_x_to_q); 152ee1455b7SJames Wright CeedElemRestrictionDestroy(&elem_restr_inv_multiplicity); 153ee1455b7SJames Wright CeedQFunctionDestroy(&qf_multiplicity); 154ee1455b7SJames Wright CeedQFunctionDestroy(&qf_sgs_dd_nodal); 155ee1455b7SJames Wright CeedOperatorDestroy(&op_multiplicity); 156ee1455b7SJames Wright CeedOperatorDestroy(&op_sgs_dd_nodal); 157ee1455b7SJames Wright PetscFunctionReturn(0); 158ee1455b7SJames Wright } 159ee1455b7SJames Wright 1609c678832SJames Wright // @brief Create CeedOperator to compute SGS contribution to the residual 1619c678832SJames Wright PetscErrorCode SGS_ModelSetupNodalIFunction(Ceed ceed, User user, CeedData ceed_data, SGS_DD_ModelSetupData sgs_dd_setup_data) { 1629c678832SJames Wright SGS_DD_Data sgs_dd_data = user->sgs_dd_data; 1639c678832SJames Wright CeedInt dim, num_comp_q, num_comp_qd, num_comp_x, num_qpts_1d, num_nodes_1d; 1649c678832SJames Wright CeedQFunction qf_sgs_apply; 1659c678832SJames Wright CeedOperator op_sgs_apply; 1669c678832SJames Wright CeedBasis basis_sgs; 1679c678832SJames Wright 1689c678832SJames Wright PetscFunctionBeginUser; 1699c678832SJames Wright PetscCall(DMGetDimension(user->dm, &dim)); 1709c678832SJames Wright CeedElemRestrictionGetNumComponents(ceed_data->elem_restr_q, &num_comp_q); 1719c678832SJames Wright CeedElemRestrictionGetNumComponents(ceed_data->elem_restr_qd_i, &num_comp_qd); 1729c678832SJames Wright CeedElemRestrictionGetNumComponents(ceed_data->elem_restr_x, &num_comp_x); 1739c678832SJames Wright CeedBasisGetNumQuadraturePoints1D(ceed_data->basis_q, &num_qpts_1d); 1749c678832SJames Wright CeedBasisGetNumNodes1D(ceed_data->basis_q, &num_nodes_1d); 1759c678832SJames Wright 1769c678832SJames Wright CeedBasisCreateTensorH1Lagrange(ceed, dim, sgs_dd_data->num_comp_sgs, num_nodes_1d, num_qpts_1d, CEED_GAUSS, &basis_sgs); 1779c678832SJames Wright 1789c678832SJames Wright switch (user->phys->state_var) { 1799c678832SJames Wright case STATEVAR_PRIMITIVE: 1809c678832SJames Wright CeedQFunctionCreateInterior(ceed, 1, IFunction_NodalSubgridStress_Prim, IFunction_NodalSubgridStress_Prim_loc, &qf_sgs_apply); 1819c678832SJames Wright break; 1829c678832SJames Wright case STATEVAR_CONSERVATIVE: 1839c678832SJames Wright CeedQFunctionCreateInterior(ceed, 1, IFunction_NodalSubgridStress_Conserv, IFunction_NodalSubgridStress_Conserv_loc, &qf_sgs_apply); 1849c678832SJames Wright break; 1859c678832SJames Wright default: 1869c678832SJames Wright SETERRQ(PetscObjectComm((PetscObject)user->dm), PETSC_ERR_SUP, "Nodal SGS evaluation not available for chosen state variable"); 1879c678832SJames Wright } 1889c678832SJames Wright 1899c678832SJames Wright CeedQFunctionSetContext(qf_sgs_apply, sgs_dd_setup_data->sgsdd_qfctx); 1909c678832SJames Wright CeedQFunctionAddInput(qf_sgs_apply, "q", num_comp_q, CEED_EVAL_INTERP); 1919c678832SJames Wright CeedQFunctionAddInput(qf_sgs_apply, "qdata", num_comp_qd, CEED_EVAL_NONE); 1929c678832SJames Wright CeedQFunctionAddInput(qf_sgs_apply, "x", num_comp_x, CEED_EVAL_INTERP); 1939c678832SJames Wright CeedQFunctionAddInput(qf_sgs_apply, "km_sgs", sgs_dd_data->num_comp_sgs, CEED_EVAL_INTERP); 1949c678832SJames Wright CeedQFunctionAddOutput(qf_sgs_apply, "Grad_v", num_comp_q * dim, CEED_EVAL_GRAD); 1959c678832SJames Wright 1969c678832SJames Wright CeedOperatorCreate(ceed, qf_sgs_apply, NULL, NULL, &op_sgs_apply); 1979c678832SJames Wright CeedOperatorSetField(op_sgs_apply, "q", ceed_data->elem_restr_q, ceed_data->basis_q, CEED_VECTOR_ACTIVE); 1989c678832SJames Wright CeedOperatorSetField(op_sgs_apply, "qdata", ceed_data->elem_restr_qd_i, CEED_BASIS_COLLOCATED, ceed_data->q_data); 1999c678832SJames Wright CeedOperatorSetField(op_sgs_apply, "x", ceed_data->elem_restr_x, ceed_data->basis_x, ceed_data->x_coord); 2009c678832SJames Wright CeedOperatorSetField(op_sgs_apply, "km_sgs", sgs_dd_setup_data->elem_restr_sgs, basis_sgs, sgs_dd_data->sgs_nodal_ceed); 2019c678832SJames Wright CeedOperatorSetField(op_sgs_apply, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q, CEED_VECTOR_ACTIVE); 2029c678832SJames Wright 2039c678832SJames Wright PetscCall( 2049c678832SJames Wright OperatorApplyContextCreate(user->dm, user->dm, ceed, op_sgs_apply, user->q_ceed, user->g_ceed, NULL, NULL, &sgs_dd_data->op_sgs_apply_ctx)); 2059c678832SJames Wright 2069c678832SJames Wright CeedOperatorDestroy(&op_sgs_apply); 2079c678832SJames Wright CeedQFunctionDestroy(&qf_sgs_apply); 2089c678832SJames Wright PetscFunctionReturn(0); 2099c678832SJames Wright } 2109c678832SJames Wright 2119c678832SJames Wright // @brief Calculate and add data-driven SGS residual to the global residual 2129c678832SJames Wright PetscErrorCode SGS_DD_ModelApplyIFunction(User user, const Vec Q_loc, Vec G_loc) { 2139c678832SJames Wright SGS_DD_Data sgs_dd_data = user->sgs_dd_data; 2149c678832SJames Wright Vec VelocityGradient, SGSNodal_loc; 2159c678832SJames Wright PetscMemType sgs_nodal_mem_type, q_mem_type; 2169c678832SJames Wright 2179c678832SJames Wright PetscFunctionBeginUser; 2189c678832SJames Wright PetscCall(DMGetGlobalVector(user->grad_velo_proj->dm, &VelocityGradient)); 2199c678832SJames Wright PetscCall(VelocityGradientProjectionApply(user, Q_loc, VelocityGradient)); 2209c678832SJames Wright 2219c678832SJames Wright // -- Compute Nodal SGS tensor 2229c678832SJames Wright PetscCall(DMGetLocalVector(sgs_dd_data->dm_sgs, &SGSNodal_loc)); 2239c678832SJames Wright PetscCall(VecP2C(Q_loc, &q_mem_type, user->q_ceed)); // q_ceed is an implicit input 2249c678832SJames Wright 2259c678832SJames Wright PetscCall(ApplyCeedOperatorGlobalToLocal(VelocityGradient, SGSNodal_loc, sgs_dd_data->op_nodal_evaluation_ctx)); 2269c678832SJames Wright 2279c678832SJames Wright PetscCall(VecC2P(user->q_ceed, q_mem_type, Q_loc)); 2289c678832SJames Wright PetscCall(VecP2C(SGSNodal_loc, &sgs_nodal_mem_type, sgs_dd_data->sgs_nodal_ceed)); // sgs_nodal_ceed is an implicit input 2299c678832SJames Wright 2309c678832SJames Wright // -- Compute contribution of the SGS stress 2319c678832SJames Wright PetscCall(ApplyAddCeedOperatorLocalToLocal(Q_loc, G_loc, sgs_dd_data->op_sgs_apply_ctx)); 2329c678832SJames Wright 2339c678832SJames Wright // -- Return local SGS vector 2349c678832SJames Wright PetscCall(VecC2P(sgs_dd_data->sgs_nodal_ceed, sgs_nodal_mem_type, SGSNodal_loc)); 2359c678832SJames Wright PetscCall(DMRestoreLocalVector(sgs_dd_data->dm_sgs, &SGSNodal_loc)); 2369c678832SJames Wright PetscCall(DMRestoreGlobalVector(user->grad_velo_proj->dm, &VelocityGradient)); 2379c678832SJames Wright 2389c678832SJames Wright PetscFunctionReturn(0); 2399c678832SJames Wright } 2409c678832SJames Wright 24162b7942eSJames Wright // @brief B = A^T, A is NxM, B is MxN 24262b7942eSJames Wright PetscErrorCode TransposeMatrix(const PetscScalar *A, PetscScalar *B, const PetscInt N, const PetscInt M) { 24362b7942eSJames Wright PetscFunctionBeginUser; 24462b7942eSJames Wright for (PetscInt i = 0; i < N; i++) { 24562b7942eSJames Wright for (PetscInt j = 0; j < M; j++) { 24662b7942eSJames Wright B[j * N + i] = A[i * M + j]; 24762b7942eSJames Wright } 24862b7942eSJames Wright } 24962b7942eSJames Wright PetscFunctionReturn(0); 25062b7942eSJames Wright } 25162b7942eSJames Wright 25262b7942eSJames Wright // @brief Read neural network coefficients from file and put into context struct 25362b7942eSJames Wright PetscErrorCode SGS_DD_ModelContextFill(MPI_Comm comm, char data_dir[PETSC_MAX_PATH_LEN], SGS_DDModelContext *psgsdd_ctx) { 25462b7942eSJames Wright SGS_DDModelContext sgsdd_ctx; 25562b7942eSJames Wright PetscInt num_inputs = (*psgsdd_ctx)->num_inputs, num_outputs = (*psgsdd_ctx)->num_outputs, num_neurons = (*psgsdd_ctx)->num_neurons; 25662b7942eSJames Wright char file_path[PETSC_MAX_PATH_LEN]; 25762b7942eSJames Wright PetscScalar *temp; 25862b7942eSJames Wright 25962b7942eSJames Wright PetscFunctionBeginUser; 26062b7942eSJames Wright { 26162b7942eSJames Wright SGS_DDModelContext sgsdd_temp; 26262b7942eSJames Wright PetscCall(PetscNew(&sgsdd_temp)); 26362b7942eSJames Wright *sgsdd_temp = **psgsdd_ctx; 26462b7942eSJames Wright sgsdd_temp->offsets.bias1 = 0; 26562b7942eSJames Wright sgsdd_temp->offsets.bias2 = sgsdd_temp->offsets.bias1 + num_neurons; 26662b7942eSJames Wright sgsdd_temp->offsets.weight1 = sgsdd_temp->offsets.bias2 + num_neurons; 26762b7942eSJames Wright sgsdd_temp->offsets.weight2 = sgsdd_temp->offsets.weight1 + num_neurons * num_inputs; 26862b7942eSJames Wright sgsdd_temp->offsets.out_scaling = sgsdd_temp->offsets.weight2 + num_inputs * num_neurons; 26962b7942eSJames Wright PetscInt total_num_scalars = sgsdd_temp->offsets.out_scaling + 2 * num_outputs; 27062b7942eSJames Wright sgsdd_temp->total_bytes = sizeof(*sgsdd_ctx) + total_num_scalars * sizeof(sgsdd_ctx->data[0]); 27162b7942eSJames Wright PetscCall(PetscMalloc(sgsdd_temp->total_bytes, &sgsdd_ctx)); 27262b7942eSJames Wright *sgsdd_ctx = *sgsdd_temp; 27362b7942eSJames Wright PetscCall(PetscFree(sgsdd_temp)); 27462b7942eSJames Wright } 27562b7942eSJames Wright 27662b7942eSJames Wright PetscCall(PetscSNPrintf(file_path, sizeof file_path, "%s/%s", data_dir, "b1.dat")); 27762b7942eSJames Wright PetscCall(PHASTADatFileReadToArrayReal(comm, file_path, &sgsdd_ctx->data[sgsdd_ctx->offsets.bias1])); 27862b7942eSJames Wright PetscCall(PetscSNPrintf(file_path, sizeof file_path, "%s/%s", data_dir, "b2.dat")); 27962b7942eSJames Wright PetscCall(PHASTADatFileReadToArrayReal(comm, file_path, &sgsdd_ctx->data[sgsdd_ctx->offsets.bias2])); 28062b7942eSJames Wright PetscCall(PetscSNPrintf(file_path, sizeof file_path, "%s/%s", data_dir, "OutScaling.dat")); 28162b7942eSJames Wright PetscCall(PHASTADatFileReadToArrayReal(comm, file_path, &sgsdd_ctx->data[sgsdd_ctx->offsets.out_scaling])); 28262b7942eSJames Wright 28362b7942eSJames Wright { 28462b7942eSJames Wright PetscCall(PetscMalloc1(num_inputs * num_neurons, &temp)); 28562b7942eSJames Wright PetscCall(PetscSNPrintf(file_path, sizeof file_path, "%s/%s", data_dir, "w1.dat")); 28662b7942eSJames Wright PetscCall(PHASTADatFileReadToArrayReal(comm, file_path, temp)); 28762b7942eSJames Wright PetscCall(TransposeMatrix(temp, &sgsdd_ctx->data[sgsdd_ctx->offsets.weight1], num_inputs, num_neurons)); 28862b7942eSJames Wright PetscCall(PetscFree(temp)); 28962b7942eSJames Wright } 29062b7942eSJames Wright { 29162b7942eSJames Wright PetscCall(PetscMalloc1(num_outputs * num_neurons, &temp)); 29262b7942eSJames Wright PetscCall(PetscSNPrintf(file_path, sizeof file_path, "%s/%s", data_dir, "w2.dat")); 29362b7942eSJames Wright PetscCall(PHASTADatFileReadToArrayReal(comm, file_path, temp)); 29462b7942eSJames Wright PetscCall(TransposeMatrix(temp, &sgsdd_ctx->data[sgsdd_ctx->offsets.weight2], num_neurons, num_outputs)); 29562b7942eSJames Wright PetscCall(PetscFree(temp)); 29662b7942eSJames Wright } 29762b7942eSJames Wright 29862b7942eSJames Wright PetscCall(PetscFree(*psgsdd_ctx)); 29962b7942eSJames Wright *psgsdd_ctx = sgsdd_ctx; 30062b7942eSJames Wright PetscFunctionReturn(0); 30162b7942eSJames Wright } 30262b7942eSJames Wright 30362b7942eSJames Wright PetscErrorCode SGS_DD_ModelSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem) { 304ee1455b7SJames Wright PetscReal alpha = 0; 30562b7942eSJames Wright SGS_DDModelContext sgsdd_ctx; 30662b7942eSJames Wright MPI_Comm comm = user->comm; 307ee1455b7SJames Wright char sgs_dd_dir[PETSC_MAX_PATH_LEN] = "./dd_sgs_parameters"; 308c38c977aSJames Wright SGS_DD_ModelSetupData sgs_dd_setup_data; 309ee1455b7SJames Wright NewtonianIdealGasContext gas; 31062b7942eSJames Wright PetscFunctionBeginUser; 31162b7942eSJames Wright 3129ab09d51SJames Wright PetscCall(VelocityGradientProjectionSetup(ceed, user, ceed_data, problem)); 3139ab09d51SJames Wright 31462b7942eSJames Wright PetscCall(PetscNew(&sgsdd_ctx)); 31562b7942eSJames Wright 3164b0f6111SJames Wright PetscOptionsBegin(comm, NULL, "SGS Data-Driven Model Options", NULL); 31762b7942eSJames Wright PetscCall(PetscOptionsReal("-sgs_model_dd_leakyrelu_alpha", "Slope parameter for Leaky ReLU activation function", NULL, alpha, &alpha, NULL)); 31862b7942eSJames Wright PetscCall(PetscOptionsString("-sgs_model_dd_parameter_dir", "Path to directory with model parameters (weights, biases, etc.)", NULL, sgs_dd_dir, 31962b7942eSJames Wright sgs_dd_dir, sizeof(sgs_dd_dir), NULL)); 32062b7942eSJames Wright PetscOptionsEnd(); 32162b7942eSJames Wright 3224b0f6111SJames Wright sgsdd_ctx->num_layers = 1; 32362b7942eSJames Wright sgsdd_ctx->num_inputs = 6; 32462b7942eSJames Wright sgsdd_ctx->num_outputs = 6; 32562b7942eSJames Wright sgsdd_ctx->num_neurons = 20; 32662b7942eSJames Wright sgsdd_ctx->alpha = alpha; 32762b7942eSJames Wright 32801ab89c1SJames Wright PetscCall(SGS_DD_ModelContextFill(comm, sgs_dd_dir, &sgsdd_ctx)); 32962b7942eSJames Wright 330ee1455b7SJames Wright // -- Create DM for storing SGS tensor at nodes 331ee1455b7SJames Wright PetscCall(PetscNew(&user->sgs_dd_data)); 332ee1455b7SJames Wright PetscCall(SGS_DD_ModelCreateDM(user->dm, &user->sgs_dd_data->dm_sgs, user->app_ctx->degree, &user->sgs_dd_data->num_comp_sgs)); 333ee1455b7SJames Wright 334c38c977aSJames Wright PetscCall(PetscNew(&sgs_dd_setup_data)); 335c38c977aSJames Wright 336ee1455b7SJames Wright CeedQFunctionContextGetDataRead(problem->apply_vol_ifunction.qfunction_context, CEED_MEM_HOST, &gas); 337ee1455b7SJames Wright sgsdd_ctx->gas = *gas; 338ee1455b7SJames Wright CeedQFunctionContextRestoreDataRead(problem->apply_vol_ifunction.qfunction_context, &gas); 339ee1455b7SJames Wright CeedQFunctionContextCreate(user->ceed, &sgs_dd_setup_data->sgsdd_qfctx); 340ee1455b7SJames Wright CeedQFunctionContextSetData(sgs_dd_setup_data->sgsdd_qfctx, CEED_MEM_HOST, CEED_USE_POINTER, sgsdd_ctx->total_bytes, sgsdd_ctx); 341ee1455b7SJames Wright CeedQFunctionContextSetDataDestroy(sgs_dd_setup_data->sgsdd_qfctx, CEED_MEM_HOST, FreeContextPetsc); 342ee1455b7SJames Wright 343c38c977aSJames Wright // -- Compute and store anisotropy tensor 344c38c977aSJames Wright PetscCall(GridAnisotropyTensorProjectionSetupApply(ceed, user, ceed_data, &sgs_dd_setup_data->elem_restr_grid_aniso, 345c38c977aSJames Wright &sgs_dd_setup_data->grid_aniso_ceed)); 346c38c977aSJames Wright 347ee1455b7SJames Wright // -- Create Nodal Evaluation Operator 348ee1455b7SJames Wright PetscCall(SGS_DD_ModelSetupNodalEvaluation(ceed, user, ceed_data, sgs_dd_setup_data)); 349ee1455b7SJames Wright 3509c678832SJames Wright // -- Create Operator to evalutate residual of SGS stress 3519c678832SJames Wright PetscCall(SGS_ModelSetupNodalIFunction(ceed, user, ceed_data, sgs_dd_setup_data)); 3529c678832SJames Wright 353c38c977aSJames Wright PetscCall(SGS_DD_ModelSetupDataDestroy(sgs_dd_setup_data)); 35462b7942eSJames Wright PetscFunctionReturn(0); 35562b7942eSJames Wright } 356ee1455b7SJames Wright 357ee1455b7SJames Wright PetscErrorCode SGS_DD_DataDestroy(SGS_DD_Data sgs_dd_data) { 358ee1455b7SJames Wright PetscFunctionBeginUser; 359ee1455b7SJames Wright if (!sgs_dd_data) PetscFunctionReturn(0); 360ee1455b7SJames Wright 361ee1455b7SJames Wright CeedVectorDestroy(&sgs_dd_data->sgs_nodal_ceed); 362ee1455b7SJames Wright PetscCall(OperatorApplyContextDestroy(sgs_dd_data->op_nodal_evaluation_ctx)); 363ee1455b7SJames Wright PetscCall(DMDestroy(&sgs_dd_data->dm_sgs)); 364ee1455b7SJames Wright PetscCall(PetscFree(sgs_dd_data)); 365ee1455b7SJames Wright 366ee1455b7SJames Wright PetscFunctionReturn(0); 367ee1455b7SJames Wright } 368