1ae2b091fSJames Wright // SPDX-FileCopyrightText: Copyright (c) 2017-2024, HONEE contributors.
2ae2b091fSJames Wright // SPDX-License-Identifier: Apache-2.0 OR BSD-2-Clause
3a515125bSLeila Ghaffari
4a515125bSLeila Ghaffari /// @file
5ea615d4cSJames Wright /// Setup libCEED Operators for HONEE
6a515125bSLeila Ghaffari
7e419654dSJeremy L Thompson #include <ceed.h>
8e419654dSJeremy L Thompson #include <petscdmplex.h>
99ae013d6SJames Wright #include <smartsim.h>
10e419654dSJeremy L Thompson
11149fb536SJames Wright #include <navierstokes.h>
12a515125bSLeila Ghaffari
13a78efa86SJames Wright // @brief Create CeedOperator for unstabilized mass KSP for explicit timestepping
CreateKSPMassOperator_Unstabilized(Honee honee,CeedOperator * op_mass)140c373b74SJames Wright static PetscErrorCode CreateKSPMassOperator_Unstabilized(Honee honee, CeedOperator *op_mass) {
150c373b74SJames Wright Ceed ceed = honee->ceed;
16a78efa86SJames Wright CeedInt num_comp_q, q_data_size;
17a78efa86SJames Wright CeedQFunction qf_mass;
1801e19bfaSJames Wright CeedElemRestriction elem_restr_q, elem_restr_qd;
19a78efa86SJames Wright CeedBasis basis_q;
20a78efa86SJames Wright CeedVector q_data;
21a78efa86SJames Wright
22a78efa86SJames Wright PetscFunctionBeginUser;
23a78efa86SJames Wright { // Get restriction and basis from the RHS function
24a78efa86SJames Wright CeedOperator *sub_ops;
2501e19bfaSJames Wright CeedOperatorField op_field;
26a78efa86SJames Wright PetscInt sub_op_index = 0; // will be 0 for the volume op
27a78efa86SJames Wright
28da7f3a07SJames Wright PetscCallCeed(ceed, CeedOperatorCompositeGetSubList(honee->op_rhs_ctx->op, &sub_ops));
2901e19bfaSJames Wright PetscCallCeed(ceed, CeedOperatorGetFieldByName(sub_ops[sub_op_index], "q", &op_field));
3001e19bfaSJames Wright PetscCallCeed(ceed, CeedOperatorFieldGetData(op_field, NULL, &elem_restr_q, &basis_q, NULL));
3101e19bfaSJames Wright PetscCallCeed(ceed, CeedOperatorGetFieldByName(sub_ops[sub_op_index], "qdata", &op_field));
3201e19bfaSJames Wright PetscCallCeed(ceed, CeedOperatorFieldGetData(op_field, NULL, &elem_restr_qd, NULL, &q_data));
33a78efa86SJames Wright }
34a78efa86SJames Wright
35a78efa86SJames Wright PetscCallCeed(ceed, CeedElemRestrictionGetNumComponents(elem_restr_q, &num_comp_q));
3601e19bfaSJames Wright PetscCallCeed(ceed, CeedElemRestrictionGetNumComponents(elem_restr_qd, &q_data_size));
37a78efa86SJames Wright
3864dd23feSJames Wright PetscCall(HoneeMassQFunctionCreate(ceed, num_comp_q, q_data_size, &qf_mass));
39a78efa86SJames Wright PetscCallCeed(ceed, CeedOperatorCreate(ceed, qf_mass, NULL, NULL, op_mass));
4071f2ed29SJames Wright PetscCallCeed(ceed, CeedOperatorSetName(*op_mass, "RHS Mass Operator"));
41a78efa86SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(*op_mass, "u", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
4201e19bfaSJames Wright PetscCallCeed(ceed, CeedOperatorSetField(*op_mass, "qdata", elem_restr_qd, CEED_BASIS_NONE, q_data));
43a78efa86SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(*op_mass, "v", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
44a78efa86SJames Wright
45fff85bd3SJames Wright PetscCallCeed(ceed, CeedVectorDestroy(&q_data));
46fff85bd3SJames Wright PetscCallCeed(ceed, CeedBasisDestroy(&basis_q));
47fff85bd3SJames Wright PetscCallCeed(ceed, CeedElemRestrictionDestroy(&elem_restr_q));
4801e19bfaSJames Wright PetscCallCeed(ceed, CeedElemRestrictionDestroy(&elem_restr_qd));
49a78efa86SJames Wright PetscCallCeed(ceed, CeedQFunctionDestroy(&qf_mass));
50a78efa86SJames Wright PetscFunctionReturn(PETSC_SUCCESS);
51a78efa86SJames Wright }
52a78efa86SJames Wright
53a78efa86SJames Wright // @brief Create KSP to solve the inverse mass operator for explicit time stepping schemes
CreateKSPMass(Honee honee,ProblemData problem)540c373b74SJames Wright static PetscErrorCode CreateKSPMass(Honee honee, ProblemData problem) {
550c373b74SJames Wright Ceed ceed = honee->ceed;
560c373b74SJames Wright DM dm = honee->dm;
57a78efa86SJames Wright CeedOperator op_mass;
58a78efa86SJames Wright
59a78efa86SJames Wright PetscFunctionBeginUser;
600c373b74SJames Wright if (problem->create_mass_operator) PetscCall(problem->create_mass_operator(honee, &op_mass));
610c373b74SJames Wright else PetscCall(CreateKSPMassOperator_Unstabilized(honee, &op_mass));
62a78efa86SJames Wright
63a78efa86SJames Wright { // -- Setup KSP for mass operator
64a78efa86SJames Wright Mat mat_mass;
65a78efa86SJames Wright Vec Zeros_loc;
66a78efa86SJames Wright MPI_Comm comm = PetscObjectComm((PetscObject)dm);
67a78efa86SJames Wright
68a78efa86SJames Wright PetscCall(DMCreateLocalVector(dm, &Zeros_loc));
69a78efa86SJames Wright PetscCall(VecZeroEntries(Zeros_loc));
70000d2032SJeremy L Thompson PetscCall(MatCreateCeed(dm, dm, op_mass, NULL, &mat_mass));
71a78efa86SJames Wright PetscCall(MatCeedSetLocalVectors(mat_mass, Zeros_loc, NULL));
72a78efa86SJames Wright
730c373b74SJames Wright PetscCall(KSPCreate(comm, &honee->mass_ksp));
740c373b74SJames Wright PetscCall(KSPSetOptionsPrefix(honee->mass_ksp, "mass_"));
7571f2ed29SJames Wright PetscCall(PetscObjectSetName((PetscObject)honee->mass_ksp, "Explicit Mass"));
76a78efa86SJames Wright { // lumped by default
77a78efa86SJames Wright PC pc;
780c373b74SJames Wright PetscCall(KSPGetPC(honee->mass_ksp, &pc));
79a78efa86SJames Wright PetscCall(PCSetType(pc, PCJACOBI));
80a78efa86SJames Wright PetscCall(PCJacobiSetType(pc, PC_JACOBI_ROWSUM));
810c373b74SJames Wright PetscCall(KSPSetType(honee->mass_ksp, KSPPREONLY));
82a78efa86SJames Wright }
830c373b74SJames Wright PetscCall(KSPSetFromOptions_WithMatCeed(honee->mass_ksp, mat_mass));
84a78efa86SJames Wright PetscCall(VecDestroy(&Zeros_loc));
85a78efa86SJames Wright PetscCall(MatDestroy(&mat_mass));
86a78efa86SJames Wright }
87a78efa86SJames Wright
88a78efa86SJames Wright PetscCallCeed(ceed, CeedOperatorDestroy(&op_mass));
89a78efa86SJames Wright PetscFunctionReturn(PETSC_SUCCESS);
90a78efa86SJames Wright }
91a78efa86SJames Wright
SetupLibceed(Ceed ceed,DM dm,Honee honee,AppCtx app_ctx,ProblemData problem)92d3c60affSJames Wright PetscErrorCode SetupLibceed(Ceed ceed, DM dm, Honee honee, AppCtx app_ctx, ProblemData problem) {
93f27c2204SJames Wright const PetscInt num_comp_q = problem->num_components;
94cf8f12c8SJames Wright PetscInt dim, num_comp_x;
95*4fe35dceSJames Wright CeedInt q_data_size_vol, num_comps_jac_data = problem->num_comps_jac_data;
96*4fe35dceSJames Wright CeedElemRestriction elem_restr_qd, elem_restr_q, elem_restr_x, elem_restr_jd_i = NULL;
97*4fe35dceSJames Wright CeedBasis basis_q, basis_x;
98*4fe35dceSJames Wright CeedVector q_data, x_coord, jac_data = NULL;
99bbc90103SJames Wright CeedOperator op_ifunction_vol = NULL, op_rhs_vol = NULL, op_ijacobian_vol = NULL;
100bbc90103SJames Wright
101bbc90103SJames Wright PetscFunctionBeginUser;
10266d54740SJames Wright PetscCall(DMGetDimension(dm, &dim));
103cf8f12c8SJames Wright PetscCall(DMGetCoordinateNumComps(dm, &num_comp_x));
10494a7b3d2SKenneth E. Jansen
1058c85b835SJames Wright CeedElemRestriction elem_restr_diff_flux = NULL;
1060880fbb6SJames Wright CeedVector div_diff_flux_ceed = NULL;
1078c85b835SJames Wright CeedBasis basis_diff_flux = NULL;
1088c85b835SJames Wright CeedEvalMode eval_mode_diff_flux = -1;
109bbc90103SJames Wright { // Create bases and element restrictions
110e3db12f8SJames Wright PetscInt height = 0, dm_field = 0;
11167263decSKenneth E. Jansen DM dm_coord;
11267263decSKenneth E. Jansen
113bbc90103SJames Wright PetscCall(DMGetCoordinateDM(dm, &dm_coord));
114cf8f12c8SJames Wright PetscCall(DMPlexCeedBasisCreate(ceed, dm, DMLABEL_DEFAULT, DMLABEL_DEFAULT_VALUE, height, dm_field, &basis_q));
115a515125bSLeila Ghaffari
116cf8f12c8SJames Wright PetscCall(DMPlexCeedElemRestrictionCreate(ceed, dm, DMLABEL_DEFAULT, DMLABEL_DEFAULT_VALUE, height, 0, &elem_restr_q));
1171abc2837SJames Wright if (num_comps_jac_data) {
118e3db12f8SJames Wright PetscCall(DMPlexCeedElemRestrictionQDataCreate(ceed, dm, DMLABEL_DEFAULT, DMLABEL_DEFAULT_VALUE, height, num_comps_jac_data, &elem_restr_jd_i));
11928160fc2SJames Wright PetscCallCeed(ceed, CeedElemRestrictionCreateVector(elem_restr_jd_i, &jac_data, NULL));
12028160fc2SJames Wright }
121ce8bebb6SJames Wright
122cf8f12c8SJames Wright PetscCallCeed(ceed, CeedElemRestrictionCreateVector(elem_restr_q, &honee->q_ceed, NULL));
123cf8f12c8SJames Wright PetscCallCeed(ceed, CeedElemRestrictionCreateVector(elem_restr_q, &honee->q_dot_ceed, NULL));
124cf8f12c8SJames Wright PetscCallCeed(ceed, CeedElemRestrictionCreateVector(elem_restr_q, &honee->g_ceed, NULL));
125*4fe35dceSJames Wright PetscCall(DMPlexCeedCoordinateCreateField(ceed, dm, DMLABEL_DEFAULT, DMLABEL_DEFAULT_VALUE, height, &elem_restr_x, &basis_x, &x_coord));
126a515125bSLeila Ghaffari
1279018c49aSJames Wright PetscCall(QDataGet(ceed, dm, DMLABEL_DEFAULT, DMLABEL_DEFAULT_VALUE, &elem_restr_qd, &q_data, &q_data_size_vol));
128ce8bebb6SJames Wright }
129ce8bebb6SJames Wright
1307cea0f50SJames Wright if (app_ctx->divFdiffproj_method != DIV_DIFF_FLUX_PROJ_NONE) {
1310c373b74SJames Wright PetscCheck(honee->diff_flux_proj, honee->comm, PETSC_ERR_ARG_WRONGSTATE,
1327cea0f50SJames Wright "Divergence of diffusive flux projection requested but object not created");
1330c373b74SJames Wright PetscCall(DivDiffFluxProjectionGetOperatorFieldData(honee->diff_flux_proj, &elem_restr_diff_flux, &basis_diff_flux, &div_diff_flux_ceed,
1340880fbb6SJames Wright &eval_mode_diff_flux));
1357cea0f50SJames Wright }
1368c85b835SJames Wright
137ce8bebb6SJames Wright { // -- Create QFunction for ICs
138866f9b4aSJames Wright CeedBasis basis_xc;
139ce8bebb6SJames Wright CeedQFunction qf_ics;
1408f18bb8bSJames Wright CeedOperator op_ics;
141ce8bebb6SJames Wright
142*4fe35dceSJames Wright PetscCallCeed(ceed, CeedBasisCreateProjection(basis_x, basis_q, &basis_xc));
143e07531f7SJames Wright PetscCallCeed(ceed, CeedQFunctionCreateInterior(ceed, 1, problem->ics.qf_func_ptr, problem->ics.qf_loc, &qf_ics));
144e07531f7SJames Wright PetscCallCeed(ceed, CeedQFunctionSetContext(qf_ics, problem->ics.qfctx));
145ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionSetUserFlopsEstimate(qf_ics, 0));
146ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ics, "x", num_comp_x, CEED_EVAL_INTERP));
147ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ics, "dx", num_comp_x * dim, CEED_EVAL_GRAD));
148ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddOutput(qf_ics, "q0", num_comp_q, CEED_EVAL_NONE));
149ce8bebb6SJames Wright
150ce8bebb6SJames Wright PetscCallCeed(ceed, CeedOperatorCreate(ceed, qf_ics, NULL, NULL, &op_ics));
151*4fe35dceSJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ics, "x", elem_restr_x, basis_xc, CEED_VECTOR_ACTIVE));
152*4fe35dceSJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ics, "dx", elem_restr_x, basis_xc, CEED_VECTOR_ACTIVE));
153cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ics, "q0", elem_restr_q, CEED_BASIS_NONE, CEED_VECTOR_ACTIVE));
1540c373b74SJames Wright PetscCallCeed(ceed, CeedOperatorGetContextFieldLabel(op_ics, "evaluation time", &honee->phys->ics_time_label));
155*4fe35dceSJames Wright PetscCall(OperatorApplyContextCreate(NULL, dm, honee->ceed, op_ics, x_coord, NULL, NULL, honee->Q_loc, &honee->op_ics_ctx));
156a515125bSLeila Ghaffari
157866f9b4aSJames Wright PetscCallCeed(ceed, CeedBasisDestroy(&basis_xc));
158ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionDestroy(&qf_ics));
159ce8bebb6SJames Wright PetscCallCeed(ceed, CeedOperatorDestroy(&op_ics));
160ce8bebb6SJames Wright }
161ce8bebb6SJames Wright
162e07531f7SJames Wright if (problem->apply_vol_rhs.qf_func_ptr) {
163ce8bebb6SJames Wright CeedQFunction qf_rhs_vol;
164ce8bebb6SJames Wright
165e07531f7SJames Wright PetscCallCeed(ceed, CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_rhs.qf_func_ptr, problem->apply_vol_rhs.qf_loc, &qf_rhs_vol));
166e07531f7SJames Wright PetscCallCeed(ceed, CeedQFunctionSetContext(qf_rhs_vol, problem->apply_vol_rhs.qfctx));
167ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionSetUserFlopsEstimate(qf_rhs_vol, 0));
168ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_rhs_vol, "q", num_comp_q, CEED_EVAL_INTERP));
169ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_rhs_vol, "Grad_q", num_comp_q * dim, CEED_EVAL_GRAD));
17089de3142SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_rhs_vol, "qdata", q_data_size_vol, CEED_EVAL_NONE));
171ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_rhs_vol, "x", num_comp_x, CEED_EVAL_INTERP));
1725f952e8dSJames Wright if (app_ctx->divFdiffproj_method != DIV_DIFF_FLUX_PROJ_NONE)
1730c373b74SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_rhs_vol, "div F_diff", honee->diff_flux_proj->num_diff_flux_comps, eval_mode_diff_flux));
174ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddOutput(qf_rhs_vol, "v", num_comp_q, CEED_EVAL_INTERP));
175ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddOutput(qf_rhs_vol, "Grad_v", num_comp_q * dim, CEED_EVAL_GRAD));
176ce8bebb6SJames Wright
177bbc90103SJames Wright PetscCallCeed(ceed, CeedOperatorCreate(ceed, qf_rhs_vol, NULL, NULL, &op_rhs_vol));
178cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_rhs_vol, "q", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
179cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_rhs_vol, "Grad_q", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
180be29160dSJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_rhs_vol, "qdata", elem_restr_qd, CEED_BASIS_NONE, q_data));
181*4fe35dceSJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_rhs_vol, "x", elem_restr_x, basis_x, x_coord));
1825f952e8dSJames Wright if (app_ctx->divFdiffproj_method != DIV_DIFF_FLUX_PROJ_NONE)
1835f952e8dSJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_rhs_vol, "div F_diff", elem_restr_diff_flux, basis_diff_flux, div_diff_flux_ceed));
184cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_rhs_vol, "v", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
185cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_rhs_vol, "Grad_v", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
186ce8bebb6SJames Wright
187ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionDestroy(&qf_rhs_vol));
188a515125bSLeila Ghaffari }
189a515125bSLeila Ghaffari
190e07531f7SJames Wright if (problem->apply_vol_ifunction.qf_func_ptr) {
191ce8bebb6SJames Wright CeedQFunction qf_ifunction_vol;
192ce8bebb6SJames Wright
1939eadbee4SJames Wright PetscCallCeed(ceed, CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_ifunction.qf_func_ptr, problem->apply_vol_ifunction.qf_loc,
1949eadbee4SJames Wright &qf_ifunction_vol));
195e07531f7SJames Wright PetscCallCeed(ceed, CeedQFunctionSetContext(qf_ifunction_vol, problem->apply_vol_ifunction.qfctx));
196ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionSetUserFlopsEstimate(qf_ifunction_vol, 0));
197ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ifunction_vol, "q", num_comp_q, CEED_EVAL_INTERP));
198ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ifunction_vol, "Grad_q", num_comp_q * dim, CEED_EVAL_GRAD));
199ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ifunction_vol, "q dot", num_comp_q, CEED_EVAL_INTERP));
20089de3142SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ifunction_vol, "qdata", q_data_size_vol, CEED_EVAL_NONE));
201ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ifunction_vol, "x", num_comp_x, CEED_EVAL_INTERP));
2020880fbb6SJames Wright if (app_ctx->divFdiffproj_method != DIV_DIFF_FLUX_PROJ_NONE)
2030c373b74SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ifunction_vol, "div F_diff", honee->diff_flux_proj->num_diff_flux_comps, eval_mode_diff_flux));
204ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddOutput(qf_ifunction_vol, "v", num_comp_q, CEED_EVAL_INTERP));
205ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddOutput(qf_ifunction_vol, "Grad_v", num_comp_q * dim, CEED_EVAL_GRAD));
2061abc2837SJames Wright if (num_comps_jac_data) PetscCallCeed(ceed, CeedQFunctionAddOutput(qf_ifunction_vol, "jac_data", num_comps_jac_data, CEED_EVAL_NONE));
207ce8bebb6SJames Wright
208bbc90103SJames Wright PetscCallCeed(ceed, CeedOperatorCreate(ceed, qf_ifunction_vol, NULL, NULL, &op_ifunction_vol));
209cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ifunction_vol, "q", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
210cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ifunction_vol, "Grad_q", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
211cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ifunction_vol, "q dot", elem_restr_q, basis_q, honee->q_dot_ceed));
212be29160dSJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ifunction_vol, "qdata", elem_restr_qd, CEED_BASIS_NONE, q_data));
213*4fe35dceSJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ifunction_vol, "x", elem_restr_x, basis_x, x_coord));
2148c85b835SJames Wright if (app_ctx->divFdiffproj_method != DIV_DIFF_FLUX_PROJ_NONE)
2150880fbb6SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ifunction_vol, "div F_diff", elem_restr_diff_flux, basis_diff_flux, div_diff_flux_ceed));
216cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ifunction_vol, "v", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
217cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ifunction_vol, "Grad_v", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
2181abc2837SJames Wright if (num_comps_jac_data) PetscCallCeed(ceed, CeedOperatorSetField(op_ifunction_vol, "jac_data", elem_restr_jd_i, CEED_BASIS_NONE, jac_data));
219752f40e3SJed Brown
220ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionDestroy(&qf_ifunction_vol));
221a515125bSLeila Ghaffari }
222a515125bSLeila Ghaffari
223e07531f7SJames Wright if (problem->apply_vol_ijacobian.qf_func_ptr) {
224ce8bebb6SJames Wright CeedQFunction qf_ijacobian_vol;
225ce8bebb6SJames Wright
2269eadbee4SJames Wright PetscCallCeed(ceed, CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_ijacobian.qf_func_ptr, problem->apply_vol_ijacobian.qf_loc,
2279eadbee4SJames Wright &qf_ijacobian_vol));
228e07531f7SJames Wright PetscCallCeed(ceed, CeedQFunctionSetContext(qf_ijacobian_vol, problem->apply_vol_ijacobian.qfctx));
229ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionSetUserFlopsEstimate(qf_ijacobian_vol, 0));
230ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ijacobian_vol, "dq", num_comp_q, CEED_EVAL_INTERP));
231ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ijacobian_vol, "Grad_dq", num_comp_q * dim, CEED_EVAL_GRAD));
23289de3142SJames Wright PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ijacobian_vol, "qdata", q_data_size_vol, CEED_EVAL_NONE));
2331abc2837SJames Wright if (num_comps_jac_data) PetscCallCeed(ceed, CeedQFunctionAddInput(qf_ijacobian_vol, "jac_data", num_comps_jac_data, CEED_EVAL_NONE));
234ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddOutput(qf_ijacobian_vol, "v", num_comp_q, CEED_EVAL_INTERP));
235ce8bebb6SJames Wright PetscCallCeed(ceed, CeedQFunctionAddOutput(qf_ijacobian_vol, "Grad_v", num_comp_q * dim, CEED_EVAL_GRAD));
236ce8bebb6SJames Wright
237bbc90103SJames Wright PetscCallCeed(ceed, CeedOperatorCreate(ceed, qf_ijacobian_vol, NULL, NULL, &op_ijacobian_vol));
238cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ijacobian_vol, "dq", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
239cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ijacobian_vol, "Grad_dq", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
240be29160dSJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ijacobian_vol, "qdata", elem_restr_qd, CEED_BASIS_NONE, q_data));
2411abc2837SJames Wright if (num_comps_jac_data) PetscCallCeed(ceed, CeedOperatorSetField(op_ijacobian_vol, "jac_data", elem_restr_jd_i, CEED_BASIS_NONE, jac_data));
242cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ijacobian_vol, "v", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
243cf8f12c8SJames Wright PetscCallCeed(ceed, CeedOperatorSetField(op_ijacobian_vol, "Grad_v", elem_restr_q, basis_q, CEED_VECTOR_ACTIVE));
244ce8bebb6SJames Wright
245b4c37c5cSJames Wright PetscCallCeed(ceed, CeedQFunctionDestroy(&qf_ijacobian_vol));
246f0b65372SJed Brown }
247f0b65372SJed Brown
248a515125bSLeila Ghaffari // -- Create and apply CEED Composite Operator for the entire domain
2490c373b74SJames Wright if (!honee->phys->implicit) { // RHS
250da5fe0e4SJames Wright CeedOperator op_rhs;
251866f9b4aSJames Wright
252da7f3a07SJames Wright PetscCallCeed(ceed, CeedOperatorCreateComposite(ceed, &op_rhs));
253da7f3a07SJames Wright PetscCallCeed(ceed, CeedOperatorCompositeAddSub(op_rhs, op_rhs_vol));
254d6cac220SJames Wright for (PetscCount b = 0; b < problem->num_bc_defs; b++) PetscCall(BCDefinitionAddOperators(problem->bc_defs[b], op_rhs, NULL));
255866f9b4aSJames Wright
2560c373b74SJames Wright PetscCall(OperatorApplyContextCreate(dm, dm, ceed, op_rhs, honee->q_ceed, honee->g_ceed, honee->Q_loc, NULL, &honee->op_rhs_ctx));
257866f9b4aSJames Wright
258866f9b4aSJames Wright // ----- Get Context Labels for Operator
2590c373b74SJames Wright PetscCallCeed(ceed, CeedOperatorGetContextFieldLabel(op_rhs, "solution time", &honee->phys->solution_time_label));
2600c373b74SJames Wright PetscCallCeed(ceed, CeedOperatorGetContextFieldLabel(op_rhs, "timestep size", &honee->phys->timestep_size_label));
261866f9b4aSJames Wright
262b4c37c5cSJames Wright PetscCallCeed(ceed, CeedOperatorDestroy(&op_rhs));
2630c373b74SJames Wright PetscCall(CreateKSPMass(honee, problem));
2640c373b74SJames Wright PetscCheck(app_ctx->sgs_model_type == SGS_MODEL_NONE, honee->comm, PETSC_ERR_SUP, "SGS modeling not implemented for explicit timestepping");
265a515125bSLeila Ghaffari } else { // IFunction
266ebfabadfSJames Wright CeedOperator op_ijacobian = NULL;
267ebfabadfSJames Wright
268866f9b4aSJames Wright // Create Composite Operaters
269da7f3a07SJames Wright PetscCallCeed(ceed, CeedOperatorCreateComposite(ceed, &honee->op_ifunction));
270da7f3a07SJames Wright PetscCallCeed(ceed, CeedOperatorCompositeAddSub(honee->op_ifunction, op_ifunction_vol));
271866f9b4aSJames Wright if (op_ijacobian_vol) {
272da7f3a07SJames Wright PetscCallCeed(ceed, CeedOperatorCreateComposite(ceed, &op_ijacobian));
273da7f3a07SJames Wright PetscCallCeed(ceed, CeedOperatorCompositeAddSub(op_ijacobian, op_ijacobian_vol));
274866f9b4aSJames Wright }
275d6cac220SJames Wright for (PetscCount b = 0; b < problem->num_bc_defs; b++) PetscCall(BCDefinitionAddOperators(problem->bc_defs[b], honee->op_ifunction, op_ijacobian));
276866f9b4aSJames Wright
277866f9b4aSJames Wright // ----- Get Context Labels for Operator
2780c373b74SJames Wright PetscCallCeed(ceed, CeedOperatorGetContextFieldLabel(honee->op_ifunction, "solution time", &honee->phys->solution_time_label));
2790c373b74SJames Wright PetscCallCeed(ceed, CeedOperatorGetContextFieldLabel(honee->op_ifunction, "timestep size", &honee->phys->timestep_size_label));
280866f9b4aSJames Wright
281ebfabadfSJames Wright if (op_ijacobian) {
2820c373b74SJames Wright PetscCall(MatCreateCeed(honee->dm, honee->dm, op_ijacobian, NULL, &honee->mat_ijacobian));
2830c373b74SJames Wright PetscCall(MatCeedSetLocalVectors(honee->mat_ijacobian, honee->Q_dot_loc, NULL));
284ebfabadfSJames Wright PetscCallCeed(ceed, CeedOperatorDestroy(&op_ijacobian));
285f0b65372SJed Brown }
286e3663b90SJames Wright if (app_ctx->sgs_model_type == SGS_MODEL_DATA_DRIVEN) PetscCall(SgsDDSetup(ceed, honee, problem));
2876d0190e2SJames Wright }
28891933550SJames Wright
289d3c60affSJames Wright if (problem->use_strong_bc_ceed) PetscCall(SetupStrongBC_Ceed(ceed, dm, honee, problem));
2909ae013d6SJames Wright if (app_ctx->sgs_train_enable) PetscCall(SGS_DD_TrainingSetup(ceed, honee));
291e3663b90SJames Wright if (app_ctx->divFdiffproj_method != DIV_DIFF_FLUX_PROJ_NONE) PetscCall(DivDiffFluxProjectionSetup(honee, honee->diff_flux_proj));
29291933550SJames Wright
293be29160dSJames Wright PetscCallCeed(ceed, CeedVectorDestroy(&q_data));
2948c85b835SJames Wright PetscCallCeed(ceed, CeedVectorDestroy(&jac_data));
295*4fe35dceSJames Wright PetscCallCeed(ceed, CeedVectorDestroy(&x_coord));
296cf8f12c8SJames Wright PetscCallCeed(ceed, CeedElemRestrictionDestroy(&elem_restr_q));
297*4fe35dceSJames Wright PetscCallCeed(ceed, CeedElemRestrictionDestroy(&elem_restr_x));
298be29160dSJames Wright PetscCallCeed(ceed, CeedElemRestrictionDestroy(&elem_restr_qd));
2998c85b835SJames Wright PetscCallCeed(ceed, CeedElemRestrictionDestroy(&elem_restr_jd_i));
3008c85b835SJames Wright PetscCallCeed(ceed, CeedElemRestrictionDestroy(&elem_restr_diff_flux));
3018c85b835SJames Wright PetscCallCeed(ceed, CeedBasisDestroy(&basis_diff_flux));
302cf8f12c8SJames Wright PetscCallCeed(ceed, CeedBasisDestroy(&basis_q));
303*4fe35dceSJames Wright PetscCallCeed(ceed, CeedBasisDestroy(&basis_x));
3040880fbb6SJames Wright PetscCallCeed(ceed, CeedVectorDestroy(&div_diff_flux_ceed));
305b4c37c5cSJames Wright PetscCallCeed(ceed, CeedOperatorDestroy(&op_ijacobian_vol));
306bbc90103SJames Wright PetscCallCeed(ceed, CeedOperatorDestroy(&op_ifunction_vol));
307bbc90103SJames Wright PetscCallCeed(ceed, CeedOperatorDestroy(&op_rhs_vol));
308d949ddfcSJames Wright PetscFunctionReturn(PETSC_SUCCESS);
309a515125bSLeila Ghaffari }
310