1ccaff030SJeremy L Thompson## libCEED: Navier-Stokes Example 2ccaff030SJeremy L Thompson 3ccaff030SJeremy L ThompsonThis page provides a description of the Navier-Stokes example for the libCEED library, based on PETSc. 4ccaff030SJeremy L Thompson 56d9fcd4bSJeremy L ThompsonHONEE, a more fully featured fluid dynamics solver, can be found on [GitLab](https://gitlab.com/phypid/honee). 66d9fcd4bSJeremy L Thompson 777841947SLeila GhaffariThe Navier-Stokes problem solves the compressible Navier-Stokes equations in three dimensions using an explicit time integration. 877841947SLeila GhaffariThe state variables are mass density, momentum density, and energy density. 9ccaff030SJeremy L Thompson 1077841947SLeila GhaffariThe main Navier-Stokes solver for libCEED is defined in [`navierstokes.c`](navierstokes.c) with different problem definitions according to the application of interest. 11ccaff030SJeremy L Thompson 123b219b86SJames Wright## Build instructions 133b219b86SJames Wright 14bc7bbd5dSLeila GhaffariBuild by using: 15ccaff030SJeremy L Thompson 16ccaff030SJeremy L Thompson`make` 17ccaff030SJeremy L Thompson 18bc7bbd5dSLeila Ghaffariand run with: 19ccaff030SJeremy L Thompson 20bc7bbd5dSLeila Ghaffari``` 21bc7bbd5dSLeila Ghaffari./navierstokes -ceed [ceed] -problem [problem type] -degree [degree] 22bc7bbd5dSLeila Ghaffari``` 23ccaff030SJeremy L Thompson 24bc7bbd5dSLeila Ghaffari## Runtime options 25ccaff030SJeremy L Thompson 26*525f58efSJeremy L Thompson<!-- fluids-inclusion --> 27ccaff030SJeremy L Thompson 28bc7bbd5dSLeila GhaffariThe Navier-Stokes mini-app is controlled via command-line options. 29bc7bbd5dSLeila GhaffariThe following options are common among all problem types: 30ccaff030SJeremy L Thompson 31bc7bbd5dSLeila Ghaffari:::{list-table} Common Runtime Options 32bc7bbd5dSLeila Ghaffari:header-rows: 1 33ccaff030SJeremy L Thompson 34bc7bbd5dSLeila Ghaffari* - Option 35bc7bbd5dSLeila Ghaffari - Description 36bc7bbd5dSLeila Ghaffari - Default value 37ccaff030SJeremy L Thompson 38bc7bbd5dSLeila Ghaffari* - `-ceed` 39bc7bbd5dSLeila Ghaffari - CEED resource specifier 40bc7bbd5dSLeila Ghaffari - `/cpu/self/opt/blocked` 41ccaff030SJeremy L Thompson 423866774cSJames Wright* - `-test_type` 433866774cSJames Wright - Run in test mode and specify whether solution (`solver`) or turbulent statistics (`turb_spanstats`) output should be verified 443866774cSJames Wright - `none` 45ccaff030SJeremy L Thompson 46bc7bbd5dSLeila Ghaffari* - `-compare_final_state_atol` 47bc7bbd5dSLeila Ghaffari - Test absolute tolerance 48bc7bbd5dSLeila Ghaffari - `1E-11` 49ccaff030SJeremy L Thompson 50bc7bbd5dSLeila Ghaffari* - `-compare_final_state_filename` 51bc7bbd5dSLeila Ghaffari - Test filename 52bc7bbd5dSLeila Ghaffari - 53ccaff030SJeremy L Thompson 54bc7bbd5dSLeila Ghaffari* - `-problem` 559e529eadSJames Wright - Problem to solve (`advection`, `density_current`, `euler_vortex`, `shocktube`, `blasius`, `channel`, `gaussian_wave`, and `taylor_green`) 56bc7bbd5dSLeila Ghaffari - `density_current` 57ccaff030SJeremy L Thompson 58bc7bbd5dSLeila Ghaffari* - `-implicit` 599e576805SJames Wright - Use implicit time integrator formulation 60bc7bbd5dSLeila Ghaffari - 61ccaff030SJeremy L Thompson 62bc7bbd5dSLeila Ghaffari* - `-degree` 63bc7bbd5dSLeila Ghaffari - Polynomial degree of tensor product basis (must be >= 1) 64bc7bbd5dSLeila Ghaffari - `1` 65ccaff030SJeremy L Thompson 662288fb52SJeremy L Thompson* - `-q_extra` 67bc7bbd5dSLeila Ghaffari - Number of extra quadrature points 68fc14f3f6SLeila Ghaffari - `0` 69ccaff030SJeremy L Thompson 7037cbb16aSJed Brown* - `-ts_monitor_solution` 7137cbb16aSJed Brown - PETSc output format, such as `cgns:output-%d.cgns` (requires PETSc `--download-cgns`) 7237cbb16aSJed Brown - 73ccaff030SJeremy L Thompson 7437cbb16aSJed Brown* - `-ts_monitor_solution_interval` 7537cbb16aSJed Brown - Number of time steps between visualization output frames. 7637cbb16aSJed Brown - `1` 7737cbb16aSJed Brown 7837cbb16aSJed Brown* - `-viewer_cgns_batch_size` 7937cbb16aSJed Brown - Number of frames written per CGNS file if the CGNS file name includes a format specifier (`%d`). 8037cbb16aSJed Brown - `20` 8137cbb16aSJed Brown 8237cbb16aSJed Brown* - `-checkpoint_interval` 8337cbb16aSJed Brown - Number of steps between writing binary checkpoints. `0` has no output, `-1` outputs final state only 84bc7bbd5dSLeila Ghaffari - `10` 85ccaff030SJeremy L Thompson 8637cbb16aSJed Brown* - `-checkpoint_vtk` 8737cbb16aSJed Brown - Checkpoints include VTK (`*.vtu`) files for visualization. Consider `-ts_monitor_solution`instead. 8837cbb16aSJed Brown - `false` 8937cbb16aSJed Brown 9037cbb16aSJed Brown* - `-viz_refine` 9137cbb16aSJed Brown - Use regular refinement for VTK visualization 9237cbb16aSJed Brown - `0` 9337cbb16aSJed Brown 94bc7bbd5dSLeila Ghaffari* - `-output_dir` 9537cbb16aSJed Brown - Output directory for binary checkpoints and VTK files (if enabled). 96bc7bbd5dSLeila Ghaffari - `.` 97ccaff030SJeremy L Thompson 9869293791SJames Wright* - `-output_add_stepnum2bin` 9969293791SJames Wright - Whether to add step numbers to output binary files 10069293791SJames Wright - `false` 10169293791SJames Wright 10269293791SJames Wright* - `-continue` 10369293791SJames Wright - Continue from previous solution (input is step number of previous solution) 10469293791SJames Wright - `0` 10569293791SJames Wright 10669293791SJames Wright* - `-continue_filename` 10769293791SJames Wright - Path to solution binary file from which to continue from 10869293791SJames Wright - `[output_dir]/ns-solution.bin` 10969293791SJames Wright 11069293791SJames Wright* - `-continue_time_filename` 1114de8550aSJed Brown - Path to time stamp binary file (only for legacy checkpoints) 11269293791SJames Wright - `[output_dir]/ns-time.bin` 11369293791SJames Wright 1144534a52eSLeila Ghaffari* - `-bc_wall` 1154534a52eSLeila Ghaffari - Use wall boundary conditions on this list of faces 1164534a52eSLeila Ghaffari - 1174534a52eSLeila Ghaffari 1184534a52eSLeila Ghaffari* - `-wall_comps` 1194534a52eSLeila Ghaffari - An array of constrained component numbers for wall BCs 1204534a52eSLeila Ghaffari - 1214534a52eSLeila Ghaffari 1229f844368SJames Wright* - `-bc_slip` 1239f844368SJames Wright - Use weak slip boundary condition on this list of faces 1249f844368SJames Wright - 1259f844368SJames Wright 1267c5bba50SJames Wright* - `-bc_symmetry_x` 1277c5bba50SJames Wright - Use symmetry boundary conditions, for the x component, on this list of faces 1284534a52eSLeila Ghaffari - 1294534a52eSLeila Ghaffari 1307c5bba50SJames Wright* - `-bc_symmetry_y` 1317c5bba50SJames Wright - Use symmetry boundary conditions, for the y component, on this list of faces 1324534a52eSLeila Ghaffari - 1334534a52eSLeila Ghaffari 1347c5bba50SJames Wright* - `-bc_symmetry_z` 1357c5bba50SJames Wright - Use symmetry boundary conditions, for the z component, on this list of faces 1364534a52eSLeila Ghaffari - 1374534a52eSLeila Ghaffari 1384534a52eSLeila Ghaffari* - `-bc_inflow` 1394534a52eSLeila Ghaffari - Use inflow boundary conditions on this list of faces 1404534a52eSLeila Ghaffari - 1414534a52eSLeila Ghaffari 1424534a52eSLeila Ghaffari* - `-bc_outflow` 1434534a52eSLeila Ghaffari - Use outflow boundary conditions on this list of faces 1444534a52eSLeila Ghaffari - 14589d0f5c0SLeila Ghaffari 1467ec884f8SJames Wright* - `-bc_freestream` 1477ec884f8SJames Wright - Use freestream boundary conditions on this list of faces 1487ec884f8SJames Wright - 1497ec884f8SJames Wright 150b7d66439SJames Wright* - `-ts_monitor_turbulence_spanstats_collect_interval` 151ee3de563SJames Wright - Number of timesteps between statistics collection 152ee3de563SJames Wright - `1` 153ee3de563SJames Wright 154b7d66439SJames Wright* - `-ts_monitor_turbulence_spanstats_viewer` 155b7d66439SJames Wright - Sets the PetscViewer for the statistics file writing, such as `cgns:output-%d.cgns` (requires PETSc `--download-cgns`). Also turns the statistics collection on. 1568ed52730SJames Wright - 1578ed52730SJames Wright 158b7d66439SJames Wright* - `-ts_monitor_turbulence_spanstats_viewer_interval` 159ee3de563SJames Wright - Number of timesteps between statistics file writing (`-1` means only at end of run) 160ee3de563SJames Wright - `-1` 161ee3de563SJames Wright 162b7d66439SJames Wright* - `-ts_monitor_turbulence_spanstats_viewer_cgns_batch_size` 1638ed52730SJames Wright - Number of frames written per CGNS file if the CGNS file name includes a format specifier (`%d`). 1648ed52730SJames Wright - `20` 1658ed52730SJames Wright 166ca69d878SAdeleke O. Bankole* - `-ts_monitor_wall_force` 167ca69d878SAdeleke O. Bankole - Viewer for the force on each no-slip wall, e.g., `ascii:force.csv:ascii_csv` to write a CSV file. 168ca69d878SAdeleke O. Bankole - 169ca69d878SAdeleke O. Bankole 1702526956eSJames Wright* - `-mesh_transform` 1712526956eSJames Wright - Transform the mesh, usually for an initial box mesh. 1722526956eSJames Wright - `none` 1732526956eSJames Wright 174bc7bbd5dSLeila Ghaffari* - `-snes_view` 175bc7bbd5dSLeila Ghaffari - View PETSc `SNES` nonlinear solver configuration 176bc7bbd5dSLeila Ghaffari - 17789d0f5c0SLeila Ghaffari 178bc7bbd5dSLeila Ghaffari* - `-log_view` 179bc7bbd5dSLeila Ghaffari - View PETSc performance log 180bc7bbd5dSLeila Ghaffari - 181ccaff030SJeremy L Thompson 182bc7bbd5dSLeila Ghaffari* - `-help` 183bc7bbd5dSLeila Ghaffari - View comprehensive information about run-time options 184bc7bbd5dSLeila Ghaffari - 185bc7bbd5dSLeila Ghaffari::: 186ccaff030SJeremy L Thompson 1877c5bba50SJames WrightFor the case of a square/cubic mesh, the list of face indices to be used with `-bc_wall`, `bc_inflow`, `bc_outflow`, `bc_freestream` and/or `-bc_symmetry_x`, `-bc_symmetry_y`, and `-bc_symmetry_z` are: 1884534a52eSLeila Ghaffari 18988626eedSJames Wright:::{list-table} 2D Face ID Labels 19088626eedSJames Wright:header-rows: 1 19188626eedSJames Wright* - PETSc Face Name 19288626eedSJames Wright - Cartesian direction 19388626eedSJames Wright - Face ID 19488626eedSJames Wright 19588626eedSJames Wright* - faceMarkerBottom 19688626eedSJames Wright - -z 19788626eedSJames Wright - 1 19888626eedSJames Wright 19988626eedSJames Wright* - faceMarkerRight 20088626eedSJames Wright - +x 20188626eedSJames Wright - 2 20288626eedSJames Wright 20388626eedSJames Wright* - faceMarkerTop 20488626eedSJames Wright - +z 20588626eedSJames Wright - 3 20688626eedSJames Wright 20788626eedSJames Wright* - faceMarkerLeft 20888626eedSJames Wright - -x 20988626eedSJames Wright - 4 21088626eedSJames Wright::: 21188626eedSJames Wright 212b5e826a6SLeila Ghaffari:::{list-table} 3D Face ID Labels 21388626eedSJames Wright:header-rows: 1 21488626eedSJames Wright* - PETSc Face Name 21588626eedSJames Wright - Cartesian direction 21688626eedSJames Wright - Face ID 21788626eedSJames Wright 21888626eedSJames Wright* - faceMarkerBottom 21988626eedSJames Wright - -z 22088626eedSJames Wright - 1 22188626eedSJames Wright 22288626eedSJames Wright* - faceMarkerTop 22388626eedSJames Wright - +z 22488626eedSJames Wright - 2 22588626eedSJames Wright 22688626eedSJames Wright* - faceMarkerFront 22788626eedSJames Wright - -y 22888626eedSJames Wright - 3 22988626eedSJames Wright 23088626eedSJames Wright* - faceMarkerBack 23188626eedSJames Wright - +y 23288626eedSJames Wright - 4 23388626eedSJames Wright 23488626eedSJames Wright* - faceMarkerRight 23588626eedSJames Wright - +x 23688626eedSJames Wright - 5 23788626eedSJames Wright 23888626eedSJames Wright* - faceMarkerLeft 23988626eedSJames Wright - -x 24088626eedSJames Wright - 6 24188626eedSJames Wright::: 2424534a52eSLeila Ghaffari 2438a94a473SJed Brown### Boundary conditions 2448a94a473SJed Brown 2453b219b86SJames WrightBoundary conditions for compressible viscous flows are notoriously tricky. 2463b219b86SJames WrightHere we offer some recommendations. 2478a94a473SJed Brown 2488a94a473SJed Brown#### Inflow 2498a94a473SJed Brown 2508a94a473SJed BrownIf in a region where the flow velocity is known (e.g., away from viscous walls), use `bc_freestream`, which solves a Riemann problem and can handle inflow and outflow (simultaneously and dynamically). 2518a94a473SJed BrownIt is stable and the least reflective boundary condition for acoustics. 2528a94a473SJed Brown 2538a94a473SJed BrownIf near a viscous wall, you may want a specified inflow profile. 2548a94a473SJed BrownUse `bc_inflow` and see {ref}`example-blasius` and discussion of synthetic turbulence generation for ways to analytically generate developed inflow profiles. 2558a94a473SJed BrownThese conditions may be either weak or strong, with the latter specifying velocity and temperature as essential boundary conditions and evaluating a boundary integral for the mass flux. 2568a94a473SJed BrownThe strong approach gives sharper resolution of velocity structures. 2578a94a473SJed BrownWe have described the primitive variable formulation here; the conservative variants are similar, but not equivalent. 2588a94a473SJed Brown 259f3f66076SJames Wright#### Outflow 2608a94a473SJed Brown 2618a94a473SJed BrownIf you know the complete exterior state, `bc_freestream` is the least reflective boundary condition, but is disruptive to viscous flow structures. 2628a94a473SJed BrownIf thermal anomalies must exit the domain, the Riemann solver must resolve the contact wave to avoid reflections. 2638a94a473SJed BrownThe default Riemann solver, HLLC, is sufficient in this regard while the simpler HLL converts thermal structures exiting the domain into grid-scale reflecting acoustics. 2648a94a473SJed Brown 2658a94a473SJed BrownIf acoustic reflections are not a concern and/or the flow is impacted by walls or interior structures that you wish to resolve to near the boundary, choose `bc_outflow`. This condition (with default `outflow_type: riemann`) is stable for both inflow and outflow, so can be used in areas that have recirculation and lateral boundaries in which the flow fluctuates. 2668a94a473SJed Brown 2678a94a473SJed BrownThe simpler `bc_outflow` variant, `outflow_type: pressure`, requires that the flow be a strict outflow (or the problem becomes ill-posed and the solver will diverge). 2688a94a473SJed BrownIn our experience, `riemann` is slightly less reflective but produces similar flows in cases of strict outflow. 2698a94a473SJed BrownThe `pressure` variant is retained to facilitate comparison with other codes, such as PHASTA-C, but we recommend `riemann` for general use. 2708a94a473SJed Brown 271f3f66076SJames Wright#### Periodicity 2728a94a473SJed Brown 2738a94a473SJed BrownPETSc provides two ways to specify periodicity: 2748a94a473SJed Brown 2758a94a473SJed Brown1. Topological periodicity, in which the donor and receiver dofs are the same, obtained using: 2768a94a473SJed Brown 2778a94a473SJed Brown```yaml 2788a94a473SJed Browndm_plex: 2798a94a473SJed Brown shape: box 2808a94a473SJed Brown box_faces: 10,12,4 2818a94a473SJed Brown box_bd: none,none,periodic 2828a94a473SJed Brown``` 2838a94a473SJed Brown 284ca69d878SAdeleke O. BankoleThe coordinates for such cases are stored as a new field with special cell-based indexing to enable wrapping through the boundary. 285ca69d878SAdeleke O. BankoleThis choice of coordinates prevents evaluating boundary integrals that cross the periodicity, such as for the outflow Riemann problem in the presence of spanwise periodicity. 286ca69d878SAdeleke O. Bankole 287ca69d878SAdeleke O. Bankole2. Isoperiodicity, in which the donor and receiver dofs are distinct in local vectors. This is obtained using `zbox`, as in: 288ca69d878SAdeleke O. Bankole 289ca69d878SAdeleke O. Bankole```yaml 290ca69d878SAdeleke O. Bankoledm_plex: 291ca69d878SAdeleke O. Bankole shape: zbox 292ca69d878SAdeleke O. Bankole box_faces: 10,12,4 293ca69d878SAdeleke O. Bankole box_bd: none,none,periodic 294ca69d878SAdeleke O. Bankole``` 295ca69d878SAdeleke O. Bankole 296ca69d878SAdeleke O. BankoleIsoperiodicity enables standard boundary integrals, and is recommended for general use. 297ca69d878SAdeleke O. BankoleAt the time of this writing, it only supports one direction of periodicity. 298ca69d878SAdeleke O. BankoleThe `zbox` method uses [Z-ordering](https://en.wikipedia.org/wiki/Z-order_curve) to construct the mesh in parallel and provide an adequate initial partition, which makes it higher performance and avoids needing a partitioning package. 2998a94a473SJed Brown 300019b7682STimothy Aiken### Advection 301019b7682STimothy Aiken 30217be3a41SJeremy L ThompsonFor testing purposes, there is a reduced mode for pure advection, which holds density $\rho$ and momentum density $\rho \bm u$ constant while advecting "total energy density" $E$. 3039e529eadSJames WrightThe advection problems can be run in both 2D and 3D, based on the DM defined for the problem. 30494a05c6fSJames WrightThe following additional command-line options are available: 305019b7682STimothy Aiken 30694a05c6fSJames Wright:::{list-table} Advection Runtime Options 307bc7bbd5dSLeila Ghaffari:header-rows: 1 308e43605a5SLeila Ghaffari 309bc7bbd5dSLeila Ghaffari* - Option 310bc7bbd5dSLeila Ghaffari - Description 311bc7bbd5dSLeila Ghaffari - Default value 312bc7bbd5dSLeila Ghaffari - Unit 313e43605a5SLeila Ghaffari 314bc7bbd5dSLeila Ghaffari* - `-rc` 315bc7bbd5dSLeila Ghaffari - Characteristic radius of thermal bubble 316bc7bbd5dSLeila Ghaffari - `1000` 317bc7bbd5dSLeila Ghaffari - `m` 318e43605a5SLeila Ghaffari 319bc7bbd5dSLeila Ghaffari* - `-units_meter` 320bc7bbd5dSLeila Ghaffari - 1 meter in scaled length units 321bc7bbd5dSLeila Ghaffari - `1E-2` 322bc7bbd5dSLeila Ghaffari - 323e43605a5SLeila Ghaffari 324bc7bbd5dSLeila Ghaffari* - `-units_second` 325bc7bbd5dSLeila Ghaffari - 1 second in scaled time units 326bc7bbd5dSLeila Ghaffari - `1E-2` 327bc7bbd5dSLeila Ghaffari - 328e43605a5SLeila Ghaffari 329bc7bbd5dSLeila Ghaffari* - `-units_kilogram` 330bc7bbd5dSLeila Ghaffari - 1 kilogram in scaled mass units 331bc7bbd5dSLeila Ghaffari - `1E-6` 332bc7bbd5dSLeila Ghaffari - 333e43605a5SLeila Ghaffari 334bc7bbd5dSLeila Ghaffari* - `-strong_form` 335bc7bbd5dSLeila Ghaffari - Strong (1) or weak/integrated by parts (0) residual 336bc7bbd5dSLeila Ghaffari - `0` 337bc7bbd5dSLeila Ghaffari - 338e43605a5SLeila Ghaffari 339bc7bbd5dSLeila Ghaffari* - `-stab` 340bc7bbd5dSLeila Ghaffari - Stabilization method (`none`, `su`, or `supg`) 341bc7bbd5dSLeila Ghaffari - `none` 342bc7bbd5dSLeila Ghaffari - 343e43605a5SLeila Ghaffari 34444e8f77dSJames Wright* - `-stab_tau` 34544e8f77dSJames Wright - Formulation for $\tau$ in stabilization (`ctau`, `advdiff_shakib`) 34644e8f77dSJames Wright - `ctau` 34744e8f77dSJames Wright - 34844e8f77dSJames Wright 34944e8f77dSJames Wright* - `-Ctau_t` 35044e8f77dSJames Wright - Scaling factor on the temporal portion of the $\tau$ formulation 35144e8f77dSJames Wright - 0. 35244e8f77dSJames Wright - 35344e8f77dSJames Wright 35444e8f77dSJames Wright* - `-Ctau_a` 35544e8f77dSJames Wright - Scaling factor on the advection portion of the $\tau$ formulation 35644e8f77dSJames Wright - $P^2$ 35744e8f77dSJames Wright - 35844e8f77dSJames Wright 359bc7bbd5dSLeila Ghaffari* - `-CtauS` 360bc7bbd5dSLeila Ghaffari - Scale coefficient for stabilization tau (nondimensional) 361bc7bbd5dSLeila Ghaffari - `0` 362bc7bbd5dSLeila Ghaffari - 363e43605a5SLeila Ghaffari 364bc7bbd5dSLeila Ghaffari* - `-wind_type` 365bc7bbd5dSLeila Ghaffari - Wind type in Advection (`rotation` or `translation`) 366bc7bbd5dSLeila Ghaffari - `rotation` 367bc7bbd5dSLeila Ghaffari - 368e43605a5SLeila Ghaffari 369bc7bbd5dSLeila Ghaffari* - `-wind_translation` 370bc7bbd5dSLeila Ghaffari - Constant wind vector when `-wind_type translation` 371bc7bbd5dSLeila Ghaffari - `1,0,0` 372bc7bbd5dSLeila Ghaffari - 373e43605a5SLeila Ghaffari 374d1d77723SJames Wright* - `-diffusion_coeff` 375d1d77723SJames Wright - Diffusion coefficient 376d1d77723SJames Wright - `0` 377d1d77723SJames Wright - 378d1d77723SJames Wright 379bc7bbd5dSLeila Ghaffari* - `-E_wind` 380bc7bbd5dSLeila Ghaffari - Total energy of inflow wind when `-wind_type translation` 381bc7bbd5dSLeila Ghaffari - `1E6` 382bc7bbd5dSLeila Ghaffari - `J` 383e43605a5SLeila Ghaffari 3847b77ddfdSJames Wright* - `-advection_ic_type` 3857b77ddfdSJames Wright - Initial condition type, from `sphere`, `cylinder`, `cosine_hill`, and `skew` 386f3f66076SJames Wright - `sphere` 387bc7bbd5dSLeila Ghaffari - 388e43605a5SLeila Ghaffari 389bc7bbd5dSLeila Ghaffari* - `-bubble_continuity` 3909e529eadSJames Wright - Different shapes for `sphere` and `cylinder` initial conditions, from `smooth`, `back_sharp`, `thick`, or `cosine` 391bc7bbd5dSLeila Ghaffari - `smooth` 392bc7bbd5dSLeila Ghaffari - 393bc7bbd5dSLeila Ghaffari::: 394ccaff030SJeremy L Thompson 39594a05c6fSJames WrightFor 3D advection, an example of the `rotation` mode can be run with: 396ccaff030SJeremy L Thompson 397bc7bbd5dSLeila Ghaffari``` 3984534a52eSLeila Ghaffari./navierstokes -problem advection -dm_plex_box_faces 10,10,10 -dm_plex_dim 3 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 8000,8000,8000 -bc_wall 1,2,3,4,5,6 -wall_comps 4 -wind_type rotation -implicit -stab su 399bc7bbd5dSLeila Ghaffari``` 400ccaff030SJeremy L Thompson 401bc7bbd5dSLeila Ghaffariand the `translation` mode with: 402ccaff030SJeremy L Thompson 403bc7bbd5dSLeila Ghaffari``` 4044534a52eSLeila Ghaffari./navierstokes -problem advection -dm_plex_box_faces 10,10,10 -dm_plex_dim 3 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 8000,8000,8000 -wind_type translation -wind_translation .5,-1,0 -bc_inflow 1,2,3,4,5,6 405bc7bbd5dSLeila Ghaffari``` 406ccaff030SJeremy L Thompson 40794a05c6fSJames WrightFor 2D advection, an example of the `rotation` mode can be run with: 40894a05c6fSJames Wright 40994a05c6fSJames Wright``` 4109e529eadSJames Wright./navierstokes -problem advection -dm_plex_box_faces 20,20 -dm_plex_box_lower 0,0 -dm_plex_box_upper 1000,1000 -bc_wall 1,2,3,4 -wall_comps 4 -wind_type rotation -implicit -stab supg 41194a05c6fSJames Wright``` 41294a05c6fSJames Wright 41394a05c6fSJames Wrightand the `translation` mode with: 41494a05c6fSJames Wright 41594a05c6fSJames Wright``` 4169e529eadSJames Wright./navierstokes -problem advection -dm_plex_box_faces 20,20 -dm_plex_box_lower 0,0 -dm_plex_box_upper 1000,1000 -units_meter 1e-4 -wind_type translation -wind_translation 1,-.5 -bc_inflow 1,2,3,4 41794a05c6fSJames Wright``` 41894a05c6fSJames WrightNote the lengths in `-dm_plex_box_upper` are given in meters, and will be nondimensionalized according to `-units_meter`. 41994a05c6fSJames Wright 420019b7682STimothy Aiken### Inviscid Ideal Gas 421019b7682STimothy Aiken 422019b7682STimothy Aiken#### Isentropic Euler vortex 423019b7682STimothy Aiken 424bc7bbd5dSLeila GhaffariFor the Isentropic Vortex problem, the following additional command-line options are available: 425ccaff030SJeremy L Thompson 426bc7bbd5dSLeila Ghaffari:::{list-table} Isentropic Vortex Runtime Options 427bc7bbd5dSLeila Ghaffari:header-rows: 1 428ccaff030SJeremy L Thompson 429bc7bbd5dSLeila Ghaffari* - Option 430bc7bbd5dSLeila Ghaffari - Description 431bc7bbd5dSLeila Ghaffari - Default value 432bc7bbd5dSLeila Ghaffari - Unit 433ccaff030SJeremy L Thompson 434bc7bbd5dSLeila Ghaffari* - `-center` 435bc7bbd5dSLeila Ghaffari - Location of vortex center 436bc7bbd5dSLeila Ghaffari - `(lx,ly,lz)/2` 437bc7bbd5dSLeila Ghaffari - `(m,m,m)` 438ccaff030SJeremy L Thompson 439bc7bbd5dSLeila Ghaffari* - `-units_meter` 440bc7bbd5dSLeila Ghaffari - 1 meter in scaled length units 441bc7bbd5dSLeila Ghaffari - `1E-2` 442bc7bbd5dSLeila Ghaffari - 443ccaff030SJeremy L Thompson 444bc7bbd5dSLeila Ghaffari* - `-units_second` 445bc7bbd5dSLeila Ghaffari - 1 second in scaled time units 446bc7bbd5dSLeila Ghaffari - `1E-2` 447bc7bbd5dSLeila Ghaffari - 448ccaff030SJeremy L Thompson 449bc7bbd5dSLeila Ghaffari* - `-mean_velocity` 450bc7bbd5dSLeila Ghaffari - Background velocity vector 451bc7bbd5dSLeila Ghaffari - `(1,1,0)` 452bc7bbd5dSLeila Ghaffari - 453ccaff030SJeremy L Thompson 454bc7bbd5dSLeila Ghaffari* - `-vortex_strength` 455bc7bbd5dSLeila Ghaffari - Strength of vortex < 10 456bc7bbd5dSLeila Ghaffari - `5` 457bc7bbd5dSLeila Ghaffari - 458932417b3SJed Brown 459932417b3SJed Brown* - `-c_tau` 460932417b3SJed Brown - Stabilization constant 461504dc8e0SLeila Ghaffari - `0.5` 462932417b3SJed Brown - 463bc7bbd5dSLeila Ghaffari::: 464ccaff030SJeremy L Thompson 465bc7bbd5dSLeila GhaffariThis problem can be run with: 466ccaff030SJeremy L Thompson 467bc7bbd5dSLeila Ghaffari``` 4687c5bba50SJames Wright./navierstokes -problem euler_vortex -dm_plex_box_faces 20,20,1 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 1000,1000,50 -dm_plex_dim 3 -bc_inflow 4,6 -bc_outflow 3,5 -bc_symmetry_z 1,2 -mean_velocity .5,-.8,0. 469bc7bbd5dSLeila Ghaffari``` 470ccaff030SJeremy L Thompson 471019b7682STimothy Aiken#### Sod shock tube 472019b7682STimothy Aiken 473019b7682STimothy AikenFor the Shock Tube problem, the following additional command-line options are available: 474019b7682STimothy Aiken 475019b7682STimothy Aiken:::{list-table} Shock Tube Runtime Options 476019b7682STimothy Aiken:header-rows: 1 477019b7682STimothy Aiken 478019b7682STimothy Aiken* - Option 479019b7682STimothy Aiken - Description 480019b7682STimothy Aiken - Default value 481019b7682STimothy Aiken - Unit 482019b7682STimothy Aiken 483019b7682STimothy Aiken* - `-units_meter` 484019b7682STimothy Aiken - 1 meter in scaled length units 485019b7682STimothy Aiken - `1E-2` 486019b7682STimothy Aiken - 487019b7682STimothy Aiken 488019b7682STimothy Aiken* - `-units_second` 489019b7682STimothy Aiken - 1 second in scaled time units 490019b7682STimothy Aiken - `1E-2` 491019b7682STimothy Aiken - 492019b7682STimothy Aiken 493019b7682STimothy Aiken* - `-yzb` 494019b7682STimothy Aiken - Use YZB discontinuity capturing 495019b7682STimothy Aiken - `none` 496019b7682STimothy Aiken - 497019b7682STimothy Aiken 498019b7682STimothy Aiken* - `-stab` 499019b7682STimothy Aiken - Stabilization method (`none`, `su`, or `supg`) 500019b7682STimothy Aiken - `none` 501019b7682STimothy Aiken - 502019b7682STimothy Aiken::: 503019b7682STimothy Aiken 504019b7682STimothy AikenThis problem can be run with: 505019b7682STimothy Aiken 506019b7682STimothy Aiken``` 5077c5bba50SJames Wright./navierstokes -problem shocktube -yzb -stab su -bc_symmetry_z 3,4 -bc_symmetry_y 1,2 -bc_wall 5,6 -dm_plex_dim 3 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 1000,100,100 -dm_plex_box_faces 200,1,1 -units_second 0.1 508019b7682STimothy Aiken``` 509019b7682STimothy Aiken 510019b7682STimothy Aiken### Newtonian viscosity, Ideal Gas 511019b7682STimothy Aiken 51288626eedSJames WrightFor the Density Current, Channel, and Blasius problems, the following common command-line options are available: 513ccaff030SJeremy L Thompson 51488626eedSJames Wright:::{list-table} Newtonian Ideal Gas problems Runtime Options 515bc7bbd5dSLeila Ghaffari:header-rows: 1 516ccaff030SJeremy L Thompson 517bc7bbd5dSLeila Ghaffari* - Option 518bc7bbd5dSLeila Ghaffari - Description 519bc7bbd5dSLeila Ghaffari - Default value 520bc7bbd5dSLeila Ghaffari - Unit 521ccaff030SJeremy L Thompson 522bc7bbd5dSLeila Ghaffari* - `-units_meter` 523bc7bbd5dSLeila Ghaffari - 1 meter in scaled length units 52488626eedSJames Wright - `1` 525bc7bbd5dSLeila Ghaffari - 526ccaff030SJeremy L Thompson 527bc7bbd5dSLeila Ghaffari* - `-units_second` 528bc7bbd5dSLeila Ghaffari - 1 second in scaled time units 52988626eedSJames Wright - `1` 530bc7bbd5dSLeila Ghaffari - 531ccaff030SJeremy L Thompson 532bc7bbd5dSLeila Ghaffari* - `-units_kilogram` 533bc7bbd5dSLeila Ghaffari - 1 kilogram in scaled mass units 53488626eedSJames Wright - `1` 535bc7bbd5dSLeila Ghaffari - 536ccaff030SJeremy L Thompson 537bc7bbd5dSLeila Ghaffari* - `-units_Kelvin` 538bc7bbd5dSLeila Ghaffari - 1 Kelvin in scaled temperature units 539bc7bbd5dSLeila Ghaffari - `1` 540bc7bbd5dSLeila Ghaffari - 541ccaff030SJeremy L Thompson 542bc7bbd5dSLeila Ghaffari* - `-stab` 543bc7bbd5dSLeila Ghaffari - Stabilization method (`none`, `su`, or `supg`) 544bc7bbd5dSLeila Ghaffari - `none` 545bc7bbd5dSLeila Ghaffari - 546ccaff030SJeremy L Thompson 547932417b3SJed Brown* - `-c_tau` 54888626eedSJames Wright - Stabilization constant, $c_\tau$ 549504dc8e0SLeila Ghaffari - `0.5` 550932417b3SJed Brown - 551932417b3SJed Brown 55288626eedSJames Wright* - `-Ctau_t` 55388626eedSJames Wright - Stabilization time constant, $C_t$ 55488626eedSJames Wright - `1.0` 55588626eedSJames Wright - 556ccaff030SJeremy L Thompson 55788626eedSJames Wright* - `-Ctau_v` 55888626eedSJames Wright - Stabilization viscous constant, $C_v$ 55994c01735SLeila Ghaffari - `36, 60, 128 for degree = 1, 2, 3` 56088626eedSJames Wright - 561ccaff030SJeremy L Thompson 56288626eedSJames Wright* - `-Ctau_C` 56388626eedSJames Wright - Stabilization continuity constant, $C_c$ 56488626eedSJames Wright - `1.0` 56588626eedSJames Wright - 566ccaff030SJeremy L Thompson 56788626eedSJames Wright* - `-Ctau_M` 56888626eedSJames Wright - Stabilization momentum constant, $C_m$ 56988626eedSJames Wright - `1.0` 57088626eedSJames Wright - 57188626eedSJames Wright 57288626eedSJames Wright* - `-Ctau_E` 57388626eedSJames Wright - Stabilization energy constant, $C_E$ 57488626eedSJames Wright - `1.0` 57588626eedSJames Wright - 576ccaff030SJeremy L Thompson 577bc7bbd5dSLeila Ghaffari* - `-cv` 578bc7bbd5dSLeila Ghaffari - Heat capacity at constant volume 579bc7bbd5dSLeila Ghaffari - `717` 580bc7bbd5dSLeila Ghaffari - `J/(kg K)` 581ccaff030SJeremy L Thompson 582bc7bbd5dSLeila Ghaffari* - `-cp` 583bc7bbd5dSLeila Ghaffari - Heat capacity at constant pressure 584bc7bbd5dSLeila Ghaffari - `1004` 585bc7bbd5dSLeila Ghaffari - `J/(kg K)` 586ccaff030SJeremy L Thompson 587a2726bdbSJames Wright* - `-gravity` 588a2726bdbSJames Wright - Gravitational acceleration vector 589a2726bdbSJames Wright - `0,0,0` 590bc7bbd5dSLeila Ghaffari - `m/s^2` 591ccaff030SJeremy L Thompson 592bc7bbd5dSLeila Ghaffari* - `-lambda` 593bc7bbd5dSLeila Ghaffari - Stokes hypothesis second viscosity coefficient 594bc7bbd5dSLeila Ghaffari - `-2/3` 595bc7bbd5dSLeila Ghaffari - 596ccaff030SJeremy L Thompson 597bc7bbd5dSLeila Ghaffari* - `-mu` 598bc7bbd5dSLeila Ghaffari - Shear dynamic viscosity coefficient 599a2726bdbSJames Wright - `1.8e-5` 600bc7bbd5dSLeila Ghaffari - `Pa s` 60177841947SLeila Ghaffari 602bc7bbd5dSLeila Ghaffari* - `-k` 603bc7bbd5dSLeila Ghaffari - Thermal conductivity 604bc7bbd5dSLeila Ghaffari - `0.02638` 605bc7bbd5dSLeila Ghaffari - `W/(m K)` 606a1df05f8SJed Brown 607a1df05f8SJed Brown* - `-newtonian_unit_tests` 608a1df05f8SJed Brown - Developer option to test properties 609a1df05f8SJed Brown - `false` 610a1df05f8SJed Brown - boolean 611de2fdd78SJames Wright 6125c0afad3SJames Wright* - `-state_var` 613a2d72b6fSJames Wright - State variables to solve solution with. `conservative` ($\rho, \rho \bm{u}, \rho e$), `primitive` ($P, \bm{u}, T$), or `entropy` ($\frac{\gamma - s}{\gamma - 1} - \frac{\rho}{P} (e - c_v T),\ \frac{\rho}{P} \bm{u},\ -\frac{\rho}{P}$) where $s = \ln(P\rho^{-\gamma})$ 6145c0afad3SJames Wright - `conservative` 6155c0afad3SJames Wright - string 616530ad8c4SKenneth E. Jansen 617530ad8c4SKenneth E. Jansen* - `-idl_decay_time` 618530ad8c4SKenneth E. Jansen - Characteristic timescale of the pressure deviance decay. The timestep is good starting point 619530ad8c4SKenneth E. Jansen - `-1` (disabled) 620530ad8c4SKenneth E. Jansen - `s` 621530ad8c4SKenneth E. Jansen 622530ad8c4SKenneth E. Jansen* - `-idl_start` 623530ad8c4SKenneth E. Jansen - Start of IDL in the x direction 624530ad8c4SKenneth E. Jansen - `0` 625530ad8c4SKenneth E. Jansen - `m` 626530ad8c4SKenneth E. Jansen 627530ad8c4SKenneth E. Jansen* - `-idl_length` 628530ad8c4SKenneth E. Jansen - Length of IDL in the positive x direction 629530ad8c4SKenneth E. Jansen - `0` 630530ad8c4SKenneth E. Jansen - `m` 631530ad8c4SKenneth E. Jansen 6322249ac91SJames Wright* - `-idl_pressure` 6332249ac91SJames Wright - Pressure used for IDL reference pressure 6342249ac91SJames Wright - `-reference_pressure` 6352249ac91SJames Wright - `Pa` 6362249ac91SJames Wright 6373f89fbfdSJames Wright* - `-diff_filter_monitor` 6383f89fbfdSJames Wright - Enable differential filter TSMonitor 6393f89fbfdSJames Wright - `false` 6403f89fbfdSJames Wright - boolean 6413f89fbfdSJames Wright 6423f89fbfdSJames Wright* - `-diff_filter_grid_based_width` 6433f89fbfdSJames Wright - Use filter width based on the grid size 6443f89fbfdSJames Wright - `false` 6453f89fbfdSJames Wright - boolean 6463f89fbfdSJames Wright 6473f89fbfdSJames Wright* - `-diff_filter_width_scaling` 6483f89fbfdSJames Wright - Anisotropic scaling for filter width in wall-aligned coordinates (snz) 6493f89fbfdSJames Wright - `1,1,1` 6503f89fbfdSJames Wright - `m` 6513f89fbfdSJames Wright 6523f89fbfdSJames Wright* - `-diff_filter_kernel_scaling` 6533f89fbfdSJames Wright - Scaling to make differential kernel size equivalent to other filter kernels 6543f89fbfdSJames Wright - `0.1` 6553f89fbfdSJames Wright - `m^2` 6563f89fbfdSJames Wright 6573f89fbfdSJames Wright* - `-diff_filter_wall_damping_function` 6583f89fbfdSJames Wright - Damping function to use at the wall for anisotropic filtering (`none`, `van_driest`) 6593f89fbfdSJames Wright - `none` 6603f89fbfdSJames Wright - string 6613f89fbfdSJames Wright 6623f89fbfdSJames Wright* - `-diff_filter_wall_damping_constant` 6639d9c52bbSJed Brown - Constant for the wall-damping function. $A^+$ for `van_driest` damping function. 6643f89fbfdSJames Wright - 25 6653f89fbfdSJames Wright - 6663f89fbfdSJames Wright 6673f89fbfdSJames Wright* - `-diff_filter_friction_length` 6683f89fbfdSJames Wright - Friction length associated with the flow, $\delta_\nu$. Used in wall-damping functions 6693f89fbfdSJames Wright - 0 6703f89fbfdSJames Wright - `m` 671bc7bbd5dSLeila Ghaffari::: 67277841947SLeila Ghaffari 673530ad8c4SKenneth E. Jansen#### Gaussian Wave 6747ec884f8SJames Wright 675530ad8c4SKenneth E. JansenThe Gaussian wave problem has the following command-line options in addition to the Newtonian Ideal Gas options: 6767ec884f8SJames Wright 677530ad8c4SKenneth E. Jansen:::{list-table} Gaussian Wave Runtime Options 6787ec884f8SJames Wright:header-rows: 1 6797ec884f8SJames Wright 6807ec884f8SJames Wright* - Option 6817ec884f8SJames Wright - Description 6827ec884f8SJames Wright - Default value 6837ec884f8SJames Wright - Unit 6847ec884f8SJames Wright 685f1e435c9SJed Brown* - `-freestream_riemann` 686f1e435c9SJed Brown - Riemann solver for boundaries (HLL or HLLC) 687f1e435c9SJed Brown - `hllc` 688f1e435c9SJed Brown - 689f1e435c9SJed Brown 690f1e435c9SJed Brown* - `-freestream_velocity` 6917ec884f8SJames Wright - Freestream velocity vector 6927ec884f8SJames Wright - `0,0,0` 6937ec884f8SJames Wright - `m/s` 6947ec884f8SJames Wright 695f1e435c9SJed Brown* - `-freestream_temperature` 6967ec884f8SJames Wright - Freestream temperature 6977ec884f8SJames Wright - `288` 6987ec884f8SJames Wright - `K` 6997ec884f8SJames Wright 700f1e435c9SJed Brown* - `-freestream_pressure` 70189e3cb53SJames Wright - Freestream pressure 7027ec884f8SJames Wright - `1.01e5` 7037ec884f8SJames Wright - `Pa` 7047ec884f8SJames Wright 7057ec884f8SJames Wright* - `-epicenter` 7067ec884f8SJames Wright - Coordinates of center of perturbation 7077ec884f8SJames Wright - `0,0,0` 7087ec884f8SJames Wright - `m` 7097ec884f8SJames Wright 7107ec884f8SJames Wright* - `-amplitude` 7117ec884f8SJames Wright - Amplitude of the perturbation 7127ec884f8SJames Wright - `0.1` 7137ec884f8SJames Wright - 7147ec884f8SJames Wright 7157ec884f8SJames Wright* - `-width` 7167ec884f8SJames Wright - Width parameter of the perturbation 7177ec884f8SJames Wright - `0.002` 7187ec884f8SJames Wright - `m` 7197ec884f8SJames Wright 7207ec884f8SJames Wright::: 7217ec884f8SJames Wright 722530ad8c4SKenneth E. JansenThis problem can be run with the `gaussianwave.yaml` file via: 7237ec884f8SJames Wright 7247ec884f8SJames Wright``` 725530ad8c4SKenneth E. Jansen./navierstokes -options_file gaussianwave.yaml 7267ec884f8SJames Wright``` 7277ec884f8SJames Wright 728530ad8c4SKenneth E. Jansen```{literalinclude} ../../../../../examples/fluids/gaussianwave.yaml 7297ec884f8SJames Wright:language: yaml 7307ec884f8SJames Wright``` 731a1df05f8SJed Brown 732d310b3d3SAdeleke O. Bankole#### Vortex Shedding - Flow past Cylinder 733d310b3d3SAdeleke O. Bankole 734d310b3d3SAdeleke O. BankoleThe vortex shedding, flow past cylinder problem has the following command-line options in addition to the Newtonian Ideal Gas options: 735d310b3d3SAdeleke O. Bankole 736d310b3d3SAdeleke O. Bankole:::{list-table} Vortex Shedding Runtime Options 737d310b3d3SAdeleke O. Bankole:header-rows: 1 738d310b3d3SAdeleke O. Bankole 739d310b3d3SAdeleke O. Bankole* - Option 740d310b3d3SAdeleke O. Bankole - Description 741d310b3d3SAdeleke O. Bankole - Default value 742d310b3d3SAdeleke O. Bankole - Unit 743d310b3d3SAdeleke O. Bankole 744d310b3d3SAdeleke O. Bankole* - `-freestream_velocity` 745d310b3d3SAdeleke O. Bankole - Freestream velocity vector 746d310b3d3SAdeleke O. Bankole - `0,0,0` 747d310b3d3SAdeleke O. Bankole - `m/s` 748d310b3d3SAdeleke O. Bankole 749d310b3d3SAdeleke O. Bankole* - `-freestream_temperature` 750d310b3d3SAdeleke O. Bankole - Freestream temperature 751d310b3d3SAdeleke O. Bankole - `288` 752d310b3d3SAdeleke O. Bankole - `K` 753d310b3d3SAdeleke O. Bankole 754d310b3d3SAdeleke O. Bankole* - `-freestream_pressure` 755d310b3d3SAdeleke O. Bankole - Freestream pressure 756d310b3d3SAdeleke O. Bankole - `1.01e5` 757d310b3d3SAdeleke O. Bankole - `Pa` 758d310b3d3SAdeleke O. Bankole 759d310b3d3SAdeleke O. Bankole::: 760d310b3d3SAdeleke O. Bankole 761d310b3d3SAdeleke O. BankoleThe initial condition is taken from `-reference_temperature` and `-reference_pressure`. 762d310b3d3SAdeleke O. BankoleTo run this problem, first generate a mesh: 763d310b3d3SAdeleke O. Bankole 764d310b3d3SAdeleke O. Bankole```console 765d310b3d3SAdeleke O. Bankole$ make -C examples/fluids/meshes 766d310b3d3SAdeleke O. Bankole``` 767d310b3d3SAdeleke O. Bankole 768d310b3d3SAdeleke O. BankoleThen run by building the executable and running: 769d310b3d3SAdeleke O. Bankole 770d310b3d3SAdeleke O. Bankole```console 771d310b3d3SAdeleke O. Bankole$ make build/fluids-navierstokes 772ca69d878SAdeleke O. Bankole$ mpiexec -n 6 build/fluids-navierstokes -options_file examples/fluids/vortexshedding.yaml -{ts,snes}_monitor_ 773d310b3d3SAdeleke O. Bankole``` 774d310b3d3SAdeleke O. Bankole 775ca69d878SAdeleke O. BankoleThe vortex shedding period is roughly 5.6 and this problem runs until time 100 (2000 time steps). 776ca69d878SAdeleke O. BankoleThe above run writes a file named `force.csv` (see `ts_monitor_wall_force` in `vortexshedding.yaml`), which can be postprocessed by running to create a figure showing lift and drag coefficients over time. 777ca69d878SAdeleke O. Bankole 778ca69d878SAdeleke O. Bankole```console 779d6734f85SAdeleke O. Bankole$ python examples/fluids/postprocess/vortexshedding.py 780ca69d878SAdeleke O. Bankole``` 781d310b3d3SAdeleke O. Bankole 782d310b3d3SAdeleke O. Bankole```{literalinclude} ../../../../../examples/fluids/vortexshedding.yaml 783d310b3d3SAdeleke O. Bankole:language: yaml 784d310b3d3SAdeleke O. Bankole``` 785d310b3d3SAdeleke O. Bankole 786019b7682STimothy Aiken#### Density current 787019b7682STimothy Aiken 788061ff11eSJames WrightThe Density Current problem has the following command-line options in addition to the Newtonian Ideal Gas options: 78988626eedSJames Wright 79088626eedSJames Wright:::{list-table} Density Current Runtime Options 79188626eedSJames Wright:header-rows: 1 79288626eedSJames Wright 79388626eedSJames Wright* - Option 79488626eedSJames Wright - Description 79588626eedSJames Wright - Default value 79688626eedSJames Wright - Unit 79788626eedSJames Wright 79888626eedSJames Wright* - `-center` 79988626eedSJames Wright - Location of bubble center 80088626eedSJames Wright - `(lx,ly,lz)/2` 80188626eedSJames Wright - `(m,m,m)` 80288626eedSJames Wright 80388626eedSJames Wright* - `-dc_axis` 80488626eedSJames Wright - Axis of density current cylindrical anomaly, or `(0,0,0)` for spherically symmetric 80588626eedSJames Wright - `(0,0,0)` 80688626eedSJames Wright - 80788626eedSJames Wright 80888626eedSJames Wright* - `-rc` 80988626eedSJames Wright - Characteristic radius of thermal bubble 81088626eedSJames Wright - `1000` 81188626eedSJames Wright - `m` 81288626eedSJames Wright 81388626eedSJames Wright* - `-theta0` 81488626eedSJames Wright - Reference potential temperature 81588626eedSJames Wright - `300` 81688626eedSJames Wright - `K` 81788626eedSJames Wright 81888626eedSJames Wright* - `-thetaC` 81988626eedSJames Wright - Perturbation of potential temperature 82088626eedSJames Wright - `-15` 82188626eedSJames Wright - `K` 82288626eedSJames Wright 82388626eedSJames Wright* - `-P0` 82488626eedSJames Wright - Atmospheric pressure 82588626eedSJames Wright - `1E5` 82688626eedSJames Wright - `Pa` 82788626eedSJames Wright 82888626eedSJames Wright* - `-N` 82988626eedSJames Wright - Brunt-Vaisala frequency 83088626eedSJames Wright - `0.01` 83188626eedSJames Wright - `1/s` 83288626eedSJames Wright::: 83388626eedSJames Wright 834bc7bbd5dSLeila GhaffariThis problem can be run with: 835ccaff030SJeremy L Thompson 836bc7bbd5dSLeila Ghaffari``` 8377c5bba50SJames Wright./navierstokes -problem density_current -dm_plex_box_faces 16,1,8 -degree 1 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 2000,125,1000 -dm_plex_dim 3 -rc 400. -bc_wall 1,2,5,6 -wall_comps 1,2,3 -bc_symmetry_y 3,4 -mu 75 83888626eedSJames Wright``` 83988626eedSJames Wright 840019b7682STimothy Aiken#### Channel flow 841019b7682STimothy Aiken 842061ff11eSJames WrightThe Channel problem has the following command-line options in addition to the Newtonian Ideal Gas options: 84388626eedSJames Wright 84488626eedSJames Wright:::{list-table} Channel Runtime Options 84588626eedSJames Wright:header-rows: 1 84688626eedSJames Wright 84788626eedSJames Wright* - Option 84888626eedSJames Wright - Description 84988626eedSJames Wright - Default value 85088626eedSJames Wright - Unit 85188626eedSJames Wright 85288626eedSJames Wright* - `-umax` 85388626eedSJames Wright - Maximum/centerline velocity of the flow 85488626eedSJames Wright - `10` 85588626eedSJames Wright - `m/s` 85688626eedSJames Wright 85788626eedSJames Wright* - `-theta0` 85888626eedSJames Wright - Reference potential temperature 85988626eedSJames Wright - `300` 86088626eedSJames Wright - `K` 86188626eedSJames Wright 86288626eedSJames Wright* - `-P0` 86388626eedSJames Wright - Atmospheric pressure 86488626eedSJames Wright - `1E5` 86588626eedSJames Wright - `Pa` 866a1df05f8SJed Brown 867a1df05f8SJed Brown* - `-body_force_scale` 868a1df05f8SJed Brown - Multiplier for body force (`-1` for flow reversal) 869a1df05f8SJed Brown - 1 870a1df05f8SJed Brown - 87188626eedSJames Wright::: 87288626eedSJames Wright 87388626eedSJames WrightThis problem can be run with the `channel.yaml` file via: 87488626eedSJames Wright 87588626eedSJames Wright``` 87688626eedSJames Wright./navierstokes -options_file channel.yaml 87788626eedSJames Wright``` 87888626eedSJames Wright```{literalinclude} ../../../../../examples/fluids/channel.yaml 87988626eedSJames Wright:language: yaml 88088626eedSJames Wright``` 88188626eedSJames Wright 8828a94a473SJed Brown(example-blasius)= 8838a94a473SJed Brown 884019b7682STimothy Aiken#### Blasius boundary layer 885019b7682STimothy Aiken 886061ff11eSJames WrightThe Blasius problem has the following command-line options in addition to the Newtonian Ideal Gas options: 88788626eedSJames Wright 88888626eedSJames Wright:::{list-table} Blasius Runtime Options 88988626eedSJames Wright:header-rows: 1 89088626eedSJames Wright 89188626eedSJames Wright* - Option 89288626eedSJames Wright - Description 89388626eedSJames Wright - Default value 89488626eedSJames Wright - Unit 89588626eedSJames Wright 896fb455ff0SLeila Ghaffari* - `-velocity_infinity` 89788626eedSJames Wright - Freestream velocity 89888626eedSJames Wright - `40` 89988626eedSJames Wright - `m/s` 90088626eedSJames Wright 901fb455ff0SLeila Ghaffari* - `-temperature_infinity` 902fb455ff0SLeila Ghaffari - Freestream temperature 90388626eedSJames Wright - `288` 90488626eedSJames Wright - `K` 90588626eedSJames Wright 906ff9b3c0eSJames Wright* - `-pressure_infinity` 907ff9b3c0eSJames Wright - Atmospheric pressure, also sets IDL reference pressure 908ff9b3c0eSJames Wright - `1.01E5` 909ff9b3c0eSJames Wright - `Pa` 910ff9b3c0eSJames Wright 911fb455ff0SLeila Ghaffari* - `-temperature_wall` 912fb455ff0SLeila Ghaffari - Wall temperature 91307d14e58SLeila Ghaffari - `288` 914fb455ff0SLeila Ghaffari - `K` 915fb455ff0SLeila Ghaffari 916fb455ff0SLeila Ghaffari* - `-delta0` 917fb455ff0SLeila Ghaffari - Boundary layer height at the inflow 918fb455ff0SLeila Ghaffari - `4.2e-3` 919fb455ff0SLeila Ghaffari - `m` 920fb455ff0SLeila Ghaffari 9219309e21cSJames Wright* - `-platemesh_modify_mesh` 9229309e21cSJames Wright - Whether to modify the mesh using the given options below. 9239309e21cSJames Wright - `false` 9249309e21cSJames Wright - 9259309e21cSJames Wright 92691eaef80SJames Wright* - `-platemesh_refine_height` 92791eaef80SJames Wright - Height at which `-platemesh_Ndelta` number of elements should refined into 92888626eedSJames Wright - `5.9E-4` 92988626eedSJames Wright - `m` 93088626eedSJames Wright 93191eaef80SJames Wright* - `-platemesh_Ndelta` 93291eaef80SJames Wright - Number of elements to keep below `-platemesh_refine_height` 93388626eedSJames Wright - `45` 93488626eedSJames Wright - 93588626eedSJames Wright 93691eaef80SJames Wright* - `-platemesh_growth` 93788626eedSJames Wright - Growth rate of the elements in the refinement region 93888626eedSJames Wright - `1.08` 93988626eedSJames Wright - 94088626eedSJames Wright 94191eaef80SJames Wright* - `-platemesh_top_angle` 94288626eedSJames Wright - Downward angle of the top face of the domain. This face serves as an outlet. 94388626eedSJames Wright - `5` 94488626eedSJames Wright - `degrees` 945ba6664aeSJames Wright 94691eaef80SJames Wright* - `-platemesh_y_node_locs_path` 94791eaef80SJames Wright - Path to file with y node locations. If empty, will use mesh warping instead. 94891eaef80SJames Wright - `""` 94991eaef80SJames Wright - 950fb455ff0SLeila Ghaffari 9519309e21cSJames Wright* - `-stg_use` 9529309e21cSJames Wright - Whether to use STG for the inflow conditions 9539309e21cSJames Wright - `false` 9549309e21cSJames Wright - 9559309e21cSJames Wright 95607d14e58SLeila Ghaffari* - `-n_chebyshev` 957fb455ff0SLeila Ghaffari - Number of Chebyshev terms 958fb455ff0SLeila Ghaffari - `20` 959fb455ff0SLeila Ghaffari - 960fb455ff0SLeila Ghaffari 96107d14e58SLeila Ghaffari* - `-chebyshev_` 96207d14e58SLeila Ghaffari - Prefix for Chebyshev snes solve 96307d14e58SLeila Ghaffari - 96407d14e58SLeila Ghaffari - 96507d14e58SLeila Ghaffari 96688626eedSJames Wright::: 96788626eedSJames Wright 96888626eedSJames WrightThis problem can be run with the `blasius.yaml` file via: 96988626eedSJames Wright 97088626eedSJames Wright``` 97188626eedSJames Wright./navierstokes -options_file blasius.yaml 97288626eedSJames Wright``` 97388626eedSJames Wright 97488626eedSJames Wright```{literalinclude} ../../../../../examples/fluids/blasius.yaml 97588626eedSJames Wright:language: yaml 976bc7bbd5dSLeila Ghaffari``` 977ba6664aeSJames Wright 978ba6664aeSJames Wright#### STG Inflow for Flat Plate 979ba6664aeSJames Wright 98017be3a41SJeremy L ThompsonUsing the STG Inflow for the blasius problem adds the following command-line options: 981ba6664aeSJames Wright 982ba6664aeSJames Wright:::{list-table} Blasius Runtime Options 983ba6664aeSJames Wright:header-rows: 1 984ba6664aeSJames Wright 985ba6664aeSJames Wright* - Option 986ba6664aeSJames Wright - Description 987ba6664aeSJames Wright - Default value 988ba6664aeSJames Wright - Unit 989ba6664aeSJames Wright 990ba6664aeSJames Wright* - `-stg_inflow_path` 991ba6664aeSJames Wright - Path to the STGInflow file 992ba6664aeSJames Wright - `./STGInflow.dat` 993ba6664aeSJames Wright - 994ba6664aeSJames Wright 995ba6664aeSJames Wright* - `-stg_rand_path` 996ba6664aeSJames Wright - Path to the STGRand file 997ba6664aeSJames Wright - `./STGRand.dat` 998ba6664aeSJames Wright - 999ba6664aeSJames Wright 1000ba6664aeSJames Wright* - `-stg_alpha` 1001ba6664aeSJames Wright - Growth rate of the wavemodes 1002ba6664aeSJames Wright - `1.01` 1003ba6664aeSJames Wright - 1004ba6664aeSJames Wright 1005ba6664aeSJames Wright* - `-stg_u0` 1006ba6664aeSJames Wright - Convective velocity, $U_0$ 1007ba6664aeSJames Wright - `0.0` 1008ba6664aeSJames Wright - `m/s` 1009ba6664aeSJames Wright 1010ba6664aeSJames Wright* - `-stg_mean_only` 1011ba6664aeSJames Wright - Only impose the mean velocity (no fluctutations) 1012ba6664aeSJames Wright - `false` 1013ba6664aeSJames Wright - 1014ba6664aeSJames Wright 101530af3636SJames Wright* - `-stg_strong` 101630af3636SJames Wright - Strongly enforce the STG inflow boundary condition 101730af3636SJames Wright - `false` 101830af3636SJames Wright - 101930af3636SJames Wright 102089060322SJames Wright* - `-stg_fluctuating_IC` 102189060322SJames Wright - "Extrude" the fluctuations through the domain as an initial condition 102289060322SJames Wright - `false` 102389060322SJames Wright - 102489060322SJames Wright 1025831dbe9eSJames Wright* - `-stg_dx` 1026831dbe9eSJames Wright - Set the element size in the x direction. Default is calculated for box meshes, assuming equispaced elements. 1027831dbe9eSJames Wright - 1028831dbe9eSJames Wright - `m` 1029831dbe9eSJames Wright 1030831dbe9eSJames Wright* - `-stg_h_scale_factor` 1031831dbe9eSJames Wright - Scale element size for cutoff frequency calculation 1032831dbe9eSJames Wright - $1/p$ 1033831dbe9eSJames Wright - 1034831dbe9eSJames Wright 1035ba6664aeSJames Wright::: 1036ba6664aeSJames Wright 1037ba6664aeSJames WrightThis problem can be run with the `blasius.yaml` file via: 1038ba6664aeSJames Wright 1039ba6664aeSJames Wright``` 1040ba6664aeSJames Wright./navierstokes -options_file blasius.yaml -stg_use true 1041ba6664aeSJames Wright``` 1042ba6664aeSJames Wright 104317be3a41SJeremy L ThompsonNote the added `-stg_use true` flag 104417be3a41SJeremy L ThompsonThis overrides the `stg: use: false` setting in the `blasius.yaml` file, enabling the use of the STG inflow. 1045