xref: /libCEED/examples/fluids/navierstokes.c (revision ea168fcf12290090da9ec39ea6d0fe45bfe59a86)
1 // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors.
2 // All Rights Reserved. See the top-level LICENSE and NOTICE files for details.
3 //
4 // SPDX-License-Identifier: BSD-2-Clause
5 //
6 // This file is part of CEED:  http://github.com/ceed
7 
8 //                        libCEED + PETSc Example: Navier-Stokes
9 //
10 // This example demonstrates a simple usage of libCEED with PETSc to solve a Navier-Stokes problem.
11 //
12 // Build with:
13 //
14 //     make [PETSC_DIR=</path/to/petsc>] [CEED_DIR=</path/to/libceed>] navierstokes
15 //
16 // Sample runs:
17 //
18 //     ./navierstokes -ceed /cpu/self -problem density_current -degree 1
19 //     ./navierstokes -ceed /gpu/cuda -problem advection -degree 1
20 //
21 //TESTARGS(name="turb_spanstats") -ceed {ceed_resource} -test_type turb_spanstats -options_file examples/fluids/tests-output/stats_test.yaml -compare_final_state_atol 1E-11 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-turb-spanstats-stats.bin
22 //TESTARGS(name="blasius") -ceed {ceed_resource} -test_type solver -options_file examples/fluids/tests-output/blasius_test.yaml -compare_final_state_atol 2E-11 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-blasius.bin
23 //TESTARGS(name="blasius_STG") -ceed {ceed_resource} -test_type solver -options_file examples/fluids/tests-output/blasius_stgtest.yaml -compare_final_state_atol 2E-11 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-blasius_STG.bin
24 //TESTARGS(name="blasius_STG_weakT") -ceed {ceed_resource} -test_type solver -options_file examples/fluids/tests-output/blasius_stgtest.yaml -compare_final_state_atol 1E-11 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-blasius_STG_weakT.bin -weakT
25 //TESTARGS(name="blasius_STG_strongBC") -ceed {ceed_resource} -test_type solver -options_file examples/fluids/tests-output/blasius_stgtest.yaml -compare_final_state_atol 1E-10 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-blasius_STG_strongBC.bin -stg_strong true
26 //TESTARGS(name="channel") -ceed {ceed_resource} -test_type solver -options_file examples/fluids/channel.yaml -compare_final_state_atol 2e-11 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-channel.bin -dm_plex_box_faces 5,5,1 -ts_max_steps 5
27 //TESTARGS(name="channel-primitive") -ceed {ceed_resource} -test_type solver -options_file examples/fluids/channel.yaml -compare_final_state_atol 2e-11 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-channel-prim.bin -dm_plex_box_faces 5,5,1 -ts_max_steps 5 -state_var primitive
28 //TESTARGS(name="dc_explicit") -ceed {ceed_resource} -test_type solver -degree 3 -q_extra 2 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -bc_slip_x 5,6 -bc_slip_y 3,4 -bc_Slip_z 1,2 -units_kilogram 1e-9 -center 62.5,62.5,187.5 -rc 100. -thetaC -35. -mu 75 -ts_dt 1e-3 -units_meter 1e-2 -units_second 1e-2 -compare_final_state_atol 1E-11 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-dc-explicit.bin
29 //TESTARGS(name="dc_implicit_stab_none") -ceed {ceed_resource} -test_type solver -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -bc_slip_x 5,6 -bc_slip_y 3,4 -bc_Slip_z 1,2 -units_kilogram 1e-9 -center 62.5,62.5,187.5 -rc 100. -thetaC -35. -mu 75 -units_meter 1e-2 -units_second 1e-2 -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -ts_type alpha -compare_final_state_atol 5E-4 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-dc-implicit-stab-none.bin
30 //TESTARGS(name="adv_rotation_implicit_stab_supg") -ceed {ceed_resource} -test_type solver -problem advection -CtauS .3 -stab supg -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -bc_wall 1,2,3,4,5,6 -wall_comps 4 -units_kilogram 1e-9 -rc 100. -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -compare_final_state_atol 5E-4 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-adv-rotation-implicit-stab-supg.bin
31 //TESTARGS(name="adv_translation_implicit_stab_su") -ceed {ceed_resource} -test_type solver -problem advection -CtauS .3 -stab su -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -units_kilogram 1e-9 -rc 100. -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -wind_type translation -wind_translation .53,-1.33,-2.65 -bc_inflow 1,2,3,4,5,6 -compare_final_state_atol 5E-4 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-adv-translation-implicit-stab-su.bin
32 //TESTARGS(name="adv2d_rotation_explicit_strong") -ceed {ceed_resource} -test_type solver -problem advection2d -strong_form 1 -degree 3 -dm_plex_box_faces 2,2 -dm_plex_box_lower 0,0 -dm_plex_box_upper 125,125 -bc_wall 1,2,3,4 -wall_comps 4 -units_kilogram 1e-9 -rc 100. -ts_dt 1e-3 -compare_final_state_atol 1E-11 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-adv2d-rotation-explicit-strong.bin
33 //TESTARGS(name="adv2d_rotation_implicit_stab_supg") -ceed {ceed_resource} -test_type solver -problem advection2d -CtauS .3 -stab supg -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0 -dm_plex_box_upper 125,125 -bc_wall 1,2,3,4 -wall_comps 4 -units_kilogram 1e-9 -rc 100. -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -compare_final_state_atol 5E-4 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-adv2d-rotation-implicit-stab-supg.bin
34 //TESTARGS(name="euler_implicit") -ceed {ceed_resource} -test_type solver -problem euler_vortex -degree 3 -dm_plex_box_faces 1,1,2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -units_meter 1e-4 -units_second 1e-4 -mean_velocity 1.4,-2.,0 -bc_inflow 4,6 -bc_outflow 3,5 -bc_slip_z 1,2 -vortex_strength 2 -ksp_atol 1e-4 -ksp_rtol 1e-3 -ksp_type bcgs -snes_atol 1e-3 -snes_lag_jacobian 100 -snes_lag_jacobian_persists -snes_mf_operator -ts_dt 1e-3 -implicit -dm_mat_preallocate_skip 0 -ts_type alpha -compare_final_state_atol 5E-4 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-euler-implicit.bin
35 //TESTARGS(name="euler_explicit") -ceed {ceed_resource} -test_type solver -problem euler_vortex -degree 3 -q_extra 2 -dm_plex_box_faces 2,2,1 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 125,125,250 -dm_plex_dim 3 -units_meter 1e-4 -units_second 1e-4 -mean_velocity 1.4,-2.,0 -bc_inflow 4,6 -bc_outflow 3,5 -bc_slip_z 1,2 -vortex_strength 2 -ts_dt 1e-7 -ts_rk_type 5bs -ts_rtol 1e-10 -ts_atol 1e-10 -compare_final_state_atol 1E-7 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-euler-explicit.bin
36 //TESTARGS(name="shocktube_explicit_su_yzb") -ceed {ceed_resource} -test_type solver -problem shocktube -degree 1 -q_extra 2 -dm_plex_box_faces 50,1,1 -units_meter 1e-2 units_second 1e-2 -dm_plex_box_lower 0,0,0 -dm_plex_box_upper 1000,20,20 -dm_plex_dim 3 -bc_slip_x 5,6 -bc_slip_y 3,4 -bc_Slip_z 1,2 -yzb -stab su -compare_final_state_atol 1E-11 -compare_final_state_filename examples/fluids/tests-output/fluids-navierstokes-shocktube-explicit-su-yzb.bin
37 
38 /// @file
39 /// Navier-Stokes example using PETSc
40 
41 const char help[] = "Solve Navier-Stokes using PETSc and libCEED\n";
42 
43 #include "navierstokes.h"
44 
45 int main(int argc, char **argv) {
46   // ---------------------------------------------------------------------------
47   // Initialize PETSc
48   // ---------------------------------------------------------------------------
49   PetscCall(PetscInitialize(&argc, &argv, NULL, help));
50 
51   // ---------------------------------------------------------------------------
52   // Create structs
53   // ---------------------------------------------------------------------------
54   AppCtx app_ctx;
55   PetscCall(PetscCalloc1(1, &app_ctx));
56 
57   ProblemData *problem = NULL;
58   PetscCall(PetscCalloc1(1, &problem));
59 
60   User user;
61   PetscCall(PetscCalloc1(1, &user));
62 
63   CeedData ceed_data;
64   PetscCall(PetscCalloc1(1, &ceed_data));
65 
66   SimpleBC bc;
67   PetscCall(PetscCalloc1(1, &bc));
68 
69   Physics phys_ctx;
70   PetscCall(PetscCalloc1(1, &phys_ctx));
71 
72   Units units;
73   PetscCall(PetscCalloc1(1, &units));
74 
75   user->app_ctx        = app_ctx;
76   user->units          = units;
77   user->phys           = phys_ctx;
78   problem->bc_from_ics = PETSC_TRUE;
79 
80   // ---------------------------------------------------------------------------
81   // Process command line options
82   // ---------------------------------------------------------------------------
83   // -- Register problems to be available on the command line
84   PetscCall(RegisterProblems_NS(app_ctx));
85 
86   // -- Process general command line options
87   MPI_Comm comm = PETSC_COMM_WORLD;
88   user->comm    = comm;
89   PetscCall(ProcessCommandLineOptions(comm, app_ctx, bc));
90 
91   // ---------------------------------------------------------------------------
92   // Initialize libCEED
93   // ---------------------------------------------------------------------------
94   // -- Initialize backend
95   Ceed ceed;
96   CeedInit(app_ctx->ceed_resource, &ceed);
97   user->ceed = ceed;
98 
99   // -- Check preferred MemType
100   CeedMemType mem_type_backend;
101   CeedGetPreferredMemType(ceed, &mem_type_backend);
102 
103   // ---------------------------------------------------------------------------
104   // Set up global mesh
105   // ---------------------------------------------------------------------------
106   // -- Create DM
107   DM      dm;
108   VecType vec_type = NULL;
109   MatType mat_type = NULL;
110   switch (mem_type_backend) {
111     case CEED_MEM_HOST:
112       vec_type = VECSTANDARD;
113       break;
114     case CEED_MEM_DEVICE: {
115       const char *resolved;
116       CeedGetResource(ceed, &resolved);
117       if (strstr(resolved, "/gpu/cuda")) vec_type = VECCUDA;
118       else if (strstr(resolved, "/gpu/hip")) vec_type = VECKOKKOS;
119       else vec_type = VECSTANDARD;
120     }
121   }
122   if (strstr(vec_type, VECCUDA)) mat_type = MATAIJCUSPARSE;
123   else if (strstr(vec_type, VECKOKKOS)) mat_type = MATAIJKOKKOS;
124   else mat_type = MATAIJ;
125   PetscCall(CreateDM(comm, problem, mat_type, vec_type, &dm));
126   user->dm = dm;
127   PetscCall(DMSetApplicationContext(dm, user));
128 
129   // ---------------------------------------------------------------------------
130   // Choose the problem from the list of registered problems
131   // ---------------------------------------------------------------------------
132   {
133     PetscErrorCode (*p)(ProblemData *, DM, void *, SimpleBC);
134     PetscCall(PetscFunctionListFind(app_ctx->problems, app_ctx->problem_name, &p));
135     if (!p) SETERRQ(PETSC_COMM_SELF, 1, "Problem '%s' not found", app_ctx->problem_name);
136     PetscCall((*p)(problem, dm, &user, bc));
137   }
138 
139   // -- Set up DM
140   PetscCall(SetUpDM(dm, problem, app_ctx->degree, bc, phys_ctx));
141   PetscCall(CreateStatsDM(user, problem, app_ctx->degree, bc));
142   app_ctx->wall_forces.num_wall = bc->num_wall;
143   PetscMalloc1(bc->num_wall, &app_ctx->wall_forces.walls);
144   PetscCall(PetscArraycpy(app_ctx->wall_forces.walls, bc->walls, bc->num_wall));
145 
146   // -- Refine DM for high-order viz
147   if (app_ctx->viz_refine) {
148     PetscCall(VizRefineDM(dm, user, problem, bc, phys_ctx));
149   }
150 
151   // ---------------------------------------------------------------------------
152   // Set up libCEED
153   // ---------------------------------------------------------------------------
154   // -- Set up libCEED objects
155   PetscCall(SetupLibceed(ceed, ceed_data, dm, user, app_ctx, problem, bc));
156 
157   if (app_ctx->turb_spanstats_enable) {
158     PetscCall(SetupStatsCollection(ceed, user, ceed_data, problem));
159   }
160 
161   // ---------------------------------------------------------------------------
162   // Set up ICs
163   // ---------------------------------------------------------------------------
164   // -- Set up global state vector Q
165   Vec Q;
166   PetscCall(DMCreateGlobalVector(dm, &Q));
167   PetscCall(VecZeroEntries(Q));
168 
169   // -- Set up local state vectors Q_loc, Q_dot_loc
170   PetscCall(DMCreateLocalVector(dm, &user->Q_loc));
171   PetscCall(DMCreateLocalVector(dm, &user->Q_dot_loc));
172   PetscCall(VecZeroEntries(user->Q_dot_loc));
173 
174   // -- Fix multiplicity for ICs
175   PetscCall(ICs_FixMultiplicity(dm, ceed_data, user, user->Q_loc, Q, 0.0));
176 
177   // ---------------------------------------------------------------------------
178   // Set up lumped mass matrix
179   // ---------------------------------------------------------------------------
180   // -- Set up global mass vector
181   PetscCall(VecDuplicate(Q, &user->M));
182 
183   // -- Compute lumped mass matrix
184   PetscCall(ComputeLumpedMassMatrix(ceed, dm, ceed_data, user->M));
185 
186   // ---------------------------------------------------------------------------
187   // Record boundary values from initial condition
188   // ---------------------------------------------------------------------------
189   // -- This overrides DMPlexInsertBoundaryValues().
190   //    We use this for the main simulation DM because the reference DMPlexInsertBoundaryValues() is very slow on the GPU due to extra device-to-host
191   //    communication. If we disable this, we should still get the same results due to the problem->bc function, but with potentially much slower
192   //    execution.
193   if (problem->bc_from_ics) {
194     PetscCall(SetBCsFromICs_NS(dm, Q, user->Q_loc));
195   }
196 
197   // ---------------------------------------------------------------------------
198   // Create output directory
199   // ---------------------------------------------------------------------------
200   PetscMPIInt rank;
201   MPI_Comm_rank(comm, &rank);
202   if (!rank) {
203     PetscCall(PetscMkdir(app_ctx->output_dir));
204   }
205 
206   // ---------------------------------------------------------------------------
207   // Gather initial Q values in case of continuation of simulation
208   // ---------------------------------------------------------------------------
209   // -- Set up initial values from binary file
210   if (app_ctx->cont_steps) {
211     PetscCall(SetupICsFromBinary(comm, app_ctx, Q));
212   }
213 
214   // ---------------------------------------------------------------------------
215   // Print problem summary
216   // ---------------------------------------------------------------------------
217   if (app_ctx->test_type == TESTTYPE_NONE) {
218     // Header and rank
219     char host_name[PETSC_MAX_PATH_LEN];
220     int  comm_size;
221     PetscCall(PetscGetHostName(host_name, sizeof host_name));
222     PetscCall(MPI_Comm_size(comm, &comm_size));
223     PetscCall(PetscPrintf(comm,
224                           "\n-- Navier-Stokes solver - libCEED + PETSc --\n"
225                           "  MPI:\n"
226                           "    Host Name                          : %s\n"
227                           "    Total ranks                        : %d\n",
228                           host_name, comm_size));
229 
230     // Problem specific info
231     PetscCall(problem->print_info(problem, app_ctx));
232 
233     // libCEED
234     const char *used_resource;
235     CeedGetResource(ceed, &used_resource);
236     PetscCall(PetscPrintf(comm,
237                           "  libCEED:\n"
238                           "    libCEED Backend                    : %s\n"
239                           "    libCEED Backend MemType            : %s\n",
240                           used_resource, CeedMemTypes[mem_type_backend]));
241     // PETSc
242     char box_faces_str[PETSC_MAX_PATH_LEN] = "3,3,3";
243     if (problem->dim == 2) box_faces_str[3] = '\0';
244     PetscCall(PetscOptionsGetString(NULL, NULL, "-dm_plex_box_faces", box_faces_str, sizeof(box_faces_str), NULL));
245     MatType mat_type;
246     VecType vec_type;
247     PetscCall(DMGetMatType(dm, &mat_type));
248     PetscCall(DMGetVecType(dm, &vec_type));
249     PetscCall(PetscPrintf(comm,
250                           "  PETSc:\n"
251                           "    Box Faces                          : %s\n"
252                           "    DM MatType                         : %s\n"
253                           "    DM VecType                         : %s\n"
254                           "    Time Stepping Scheme               : %s\n",
255                           box_faces_str, mat_type, vec_type, phys_ctx->implicit ? "implicit" : "explicit"));
256     if (app_ctx->cont_steps) {
257       PetscCall(PetscPrintf(comm,
258                             "  Continue:\n"
259                             "    Filename:                          : %s\n"
260                             "    Step:                              : %" PetscInt_FMT "\n"
261                             "    Time:                              : %g\n",
262                             app_ctx->cont_file, app_ctx->cont_steps, app_ctx->cont_time));
263     }
264     // Mesh
265     const PetscInt num_comp_q = 5;
266     CeedInt        glob_dofs, owned_dofs;
267     PetscInt       glob_nodes, local_nodes;
268     const CeedInt  num_P = app_ctx->degree + 1, num_Q = num_P + app_ctx->q_extra;
269     // -- Get global size
270     PetscCall(VecGetSize(Q, &glob_dofs));
271     PetscCall(VecGetLocalSize(Q, &owned_dofs));
272     glob_nodes = glob_dofs / num_comp_q;
273     // -- Get local size
274     PetscCall(VecGetSize(user->Q_loc, &local_nodes));
275     local_nodes /= num_comp_q;
276     PetscCall(PetscPrintf(comm,
277                           "  Mesh:\n"
278                           "    Number of 1D Basis Nodes (P)       : %" CeedInt_FMT "\n"
279                           "    Number of 1D Quadrature Points (Q) : %" CeedInt_FMT "\n"
280                           "    Global DoFs                        : %" PetscInt_FMT "\n"
281                           "    Owned DoFs                         : %" PetscInt_FMT "\n"
282                           "    DoFs per node                      : %" PetscInt_FMT "\n"
283                           "    Global nodes (DoFs / %" PetscInt_FMT ")            : %" PetscInt_FMT "\n"
284                           "    Local nodes                        : %" PetscInt_FMT "\n",
285                           num_P, num_Q, glob_dofs, owned_dofs, num_comp_q, num_comp_q, glob_nodes, local_nodes));
286   }
287   // -- Zero Q_loc
288   PetscCall(VecZeroEntries(user->Q_loc));
289 
290   // ---------------------------------------------------------------------------
291   // TS: Create, setup, and solve
292   // ---------------------------------------------------------------------------
293   TS          ts;
294   PetscScalar final_time;
295   PetscCall(TSSolve_NS(dm, user, app_ctx, phys_ctx, &Q, &final_time, &ts));
296 
297   // ---------------------------------------------------------------------------
298   // Post-processing
299   // ---------------------------------------------------------------------------
300   PetscCall(PostProcess_NS(ts, ceed_data, dm, problem, user, Q, final_time));
301 
302   // ---------------------------------------------------------------------------
303   // Destroy libCEED objects
304   // ---------------------------------------------------------------------------
305 
306   PetscCall(DestroyStats(user, ceed_data));
307 
308   // -- Vectors
309   CeedVectorDestroy(&ceed_data->x_coord);
310   CeedVectorDestroy(&ceed_data->q_data);
311   CeedVectorDestroy(&user->q_ceed);
312   CeedVectorDestroy(&user->q_dot_ceed);
313   CeedVectorDestroy(&user->g_ceed);
314   CeedVectorDestroy(&user->coo_values_amat);
315   CeedVectorDestroy(&user->coo_values_pmat);
316 
317   // -- QFunctions
318   CeedQFunctionDestroy(&ceed_data->qf_setup_vol);
319   CeedQFunctionDestroy(&ceed_data->qf_ics);
320   CeedQFunctionDestroy(&ceed_data->qf_rhs_vol);
321   CeedQFunctionDestroy(&ceed_data->qf_ifunction_vol);
322   CeedQFunctionDestroy(&ceed_data->qf_setup_sur);
323   CeedQFunctionDestroy(&ceed_data->qf_apply_inflow);
324   CeedQFunctionDestroy(&ceed_data->qf_apply_inflow_jacobian);
325   CeedQFunctionDestroy(&ceed_data->qf_apply_freestream);
326   CeedQFunctionDestroy(&ceed_data->qf_apply_freestream_jacobian);
327 
328   // -- Bases
329   CeedBasisDestroy(&ceed_data->basis_q);
330   CeedBasisDestroy(&ceed_data->basis_x);
331   CeedBasisDestroy(&ceed_data->basis_xc);
332   CeedBasisDestroy(&ceed_data->basis_q_sur);
333   CeedBasisDestroy(&ceed_data->basis_x_sur);
334 
335   // -- Restrictions
336   CeedElemRestrictionDestroy(&ceed_data->elem_restr_q);
337   CeedElemRestrictionDestroy(&ceed_data->elem_restr_x);
338   CeedElemRestrictionDestroy(&ceed_data->elem_restr_qd_i);
339 
340   // -- Operators
341   CeedOperatorDestroy(&ceed_data->op_setup_vol);
342   CeedOperatorDestroy(&ceed_data->op_ics);
343   CeedOperatorDestroy(&user->op_rhs_vol);
344   CeedOperatorDestroy(&user->op_ifunction_vol);
345   CeedOperatorDestroy(&user->op_rhs);
346   CeedOperatorDestroy(&user->op_ifunction);
347   CeedOperatorDestroy(&user->op_ijacobian);
348 
349   // -- Ceed
350   CeedDestroy(&ceed);
351 
352   // ---------------------------------------------------------------------------
353   // Clean up PETSc
354   // ---------------------------------------------------------------------------
355   // -- Vectors
356   PetscCall(VecDestroy(&Q));
357   PetscCall(VecDestroy(&user->M));
358   PetscCall(VecDestroy(&user->Q_loc));
359   PetscCall(VecDestroy(&user->Q_dot_loc));
360 
361   // -- Matrices
362   PetscCall(MatDestroy(&user->interp_viz));
363 
364   // -- DM
365   PetscCall(DMDestroy(&dm));
366   PetscCall(DMDestroy(&user->dm_viz));
367 
368   // -- TS
369   PetscCall(TSDestroy(&ts));
370 
371   // -- Function list
372   PetscCall(PetscFunctionListDestroy(&app_ctx->problems));
373 
374   PetscCall(PetscFree(app_ctx->amat_type));
375   PetscCall(PetscFree(app_ctx->wall_forces.walls));
376   PetscCall(PetscViewerDestroy(&app_ctx->wall_forces.viewer));
377 
378   // -- Structs
379   PetscCall(PetscFree(units));
380   PetscCall(PetscFree(user));
381   PetscCall(PetscFree(problem));
382   PetscCall(PetscFree(bc));
383   PetscCall(PetscFree(phys_ctx));
384   PetscCall(PetscFree(app_ctx));
385   PetscCall(PetscFree(ceed_data));
386 
387   return PetscFinalize();
388 }
389