13d8e8822SJeremy L Thompson // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors. 23d8e8822SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 377841947SLeila Ghaffari // 43d8e8822SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause 577841947SLeila Ghaffari // 63d8e8822SJeremy L Thompson // This file is part of CEED: http://github.com/ceed 777841947SLeila Ghaffari 8b7c563b6SJeremy L Thompson #ifndef libceed_fluids_examples_navier_stokes_h 9b7c563b6SJeremy L Thompson #define libceed_fluids_examples_navier_stokes_h 1077841947SLeila Ghaffari 1177841947SLeila Ghaffari #include <ceed.h> 1277841947SLeila Ghaffari #include <petscts.h> 1377841947SLeila Ghaffari #include <stdbool.h> 142b730f8bSJeremy L Thompson 154021610dSJames Wright #include "./include/petsc_ops.h" 1697baf651SJames Wright #include "qfunctions/newtonian_types.h" 172b730f8bSJeremy L Thompson #include "qfunctions/stabilization_types.h" 1877841947SLeila Ghaffari 19d31f425aSJeremy L Thompson #if PETSC_VERSION_LT(3, 20, 0) 20d31f425aSJeremy L Thompson #error "PETSc v3.20 or later is required" 2177841947SLeila Ghaffari #endif 2277841947SLeila Ghaffari 2349a40c8aSKenneth E. Jansen #if PETSC_VERSION_LT(3, 21, 0) 2449a40c8aSKenneth E. Jansen #define DMSetCoordinateDisc(a, b, c) DMProjectCoordinates(a, b) 2549a40c8aSKenneth E. Jansen #endif 2649a40c8aSKenneth E. Jansen 27d9d458caSJames Wright #define PetscCallCeed(ceed, ...) \ 28a424bcd0SJames Wright do { \ 29d9d458caSJames Wright int ierr = __VA_ARGS__; \ 30a424bcd0SJames Wright if (ierr != CEED_ERROR_SUCCESS) { \ 31a424bcd0SJames Wright const char *error_message; \ 32a424bcd0SJames Wright CeedGetErrorMessage(ceed, &error_message); \ 33a424bcd0SJames Wright SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "%s", error_message); \ 34a424bcd0SJames Wright } \ 35a424bcd0SJames Wright } while (0) 36a424bcd0SJames Wright 3777841947SLeila Ghaffari // ----------------------------------------------------------------------------- 3877841947SLeila Ghaffari // Enums 3977841947SLeila Ghaffari // ----------------------------------------------------------------------------- 4077841947SLeila Ghaffari // Translate PetscMemType to CeedMemType 412b730f8bSJeremy L Thompson static inline CeedMemType MemTypeP2C(PetscMemType mem_type) { return PetscMemTypeDevice(mem_type) ? CEED_MEM_DEVICE : CEED_MEM_HOST; } 4277841947SLeila Ghaffari 4377841947SLeila Ghaffari // Euler - test cases 4477841947SLeila Ghaffari typedef enum { 45bc7bbd5dSLeila Ghaffari EULER_TEST_ISENTROPIC_VORTEX = 0, 4677841947SLeila Ghaffari EULER_TEST_1 = 1, 4777841947SLeila Ghaffari EULER_TEST_2 = 2, 4877841947SLeila Ghaffari EULER_TEST_3 = 3, 4977841947SLeila Ghaffari EULER_TEST_4 = 4, 5032f166c6SLeila Ghaffari EULER_TEST_5 = 5, 5177841947SLeila Ghaffari } EulerTestType; 522b730f8bSJeremy L Thompson static const char *const EulerTestTypes[] = {"isentropic_vortex", "test_1", "test_2", "test_3", "test_4", "test_5", 532b730f8bSJeremy L Thompson "EulerTestType", "EULER_TEST_", NULL}; 5477841947SLeila Ghaffari 55700ae941SJames Wright // Advection - Wind types 56700ae941SJames Wright static const char *const WindTypes[] = {"rotation", "translation", "WindType", "WIND_", NULL}; 57700ae941SJames Wright 58700ae941SJames Wright // Advection - Bubble Types 59700ae941SJames Wright static const char *const BubbleTypes[] = {"sphere", "cylinder", "BubbleType", "BUBBLE_", NULL}; 60700ae941SJames Wright 61700ae941SJames Wright // Advection - Bubble Continuity Types 62700ae941SJames Wright static const char *const BubbleContinuityTypes[] = {"smooth", "back_sharp", "thick", "BubbleContinuityType", "BUBBLE_CONTINUITY_", NULL}; 63700ae941SJames Wright 6477841947SLeila Ghaffari // Stabilization methods 652b730f8bSJeremy L Thompson static const char *const StabilizationTypes[] = {"none", "SU", "SUPG", "StabilizationType", "STAB_", NULL}; 6677841947SLeila Ghaffari 6751b00d91SJames Wright // Test mode type 688fb33541SJames Wright typedef enum { 698fb33541SJames Wright TESTTYPE_NONE = 0, 708fb33541SJames Wright TESTTYPE_SOLVER = 1, 718fb33541SJames Wright TESTTYPE_TURB_SPANSTATS = 2, 72970fa48bSJames Wright TESTTYPE_DIFF_FILTER = 3, 738fb33541SJames Wright } TestType; 74970fa48bSJames Wright static const char *const TestTypes[] = {"none", "solver", "turb_spanstats", "diff_filter", "TestType", "TESTTYPE_", NULL}; 758fb33541SJames Wright 762526956eSJames Wright // Subgrid-Stress mode type 7719ffbc25SJames Wright typedef enum { 7819ffbc25SJames Wright SGS_MODEL_NONE = 0, 7919ffbc25SJames Wright SGS_MODEL_DATA_DRIVEN = 1, 8019ffbc25SJames Wright } SGSModelType; 8119ffbc25SJames Wright static const char *const SGSModelTypes[] = {"none", "data_driven", "SGSModelType", "SGS_MODEL_", NULL}; 8219ffbc25SJames Wright 832526956eSJames Wright // Mesh transformation type 842526956eSJames Wright typedef enum { 852526956eSJames Wright MESH_TRANSFORM_NONE = 0, 862526956eSJames Wright MESH_TRANSFORM_PLATEMESH = 1, 872526956eSJames Wright } MeshTransformType; 882526956eSJames Wright static const char *const MeshTransformTypes[] = {"none", "platemesh", "MeshTransformType", "MESH_TRANSFORM_", NULL}; 892526956eSJames Wright 90bd882c8aSJames Wright static const char *const DifferentialFilterDampingFunctions[] = { 91bd882c8aSJames Wright "none", "van_driest", "mms", "DifferentialFilterDampingFunction", "DIFF_FILTER_DAMP_", NULL}; 92bd882c8aSJames Wright 9377841947SLeila Ghaffari // ----------------------------------------------------------------------------- 9475d1798cSJames Wright // Log Events 9575d1798cSJames Wright // ----------------------------------------------------------------------------- 9675d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorApply; 9775d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssemble; 9875d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssembleDiagonal; 9975d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssemblePointBlockDiagonal; 10075d1798cSJames Wright PetscErrorCode RegisterLogEvents(); 10175d1798cSJames Wright 10275d1798cSJames Wright // ----------------------------------------------------------------------------- 10377841947SLeila Ghaffari // Structs 10477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 10577841947SLeila Ghaffari // Structs declarations 10677841947SLeila Ghaffari typedef struct AppCtx_private *AppCtx; 10777841947SLeila Ghaffari typedef struct CeedData_private *CeedData; 10877841947SLeila Ghaffari typedef struct User_private *User; 10977841947SLeila Ghaffari typedef struct Units_private *Units; 11077841947SLeila Ghaffari typedef struct SimpleBC_private *SimpleBC; 11177841947SLeila Ghaffari typedef struct Physics_private *Physics; 11277841947SLeila Ghaffari 11377841947SLeila Ghaffari // Application context from user command line options 11477841947SLeila Ghaffari struct AppCtx_private { 11577841947SLeila Ghaffari // libCEED arguments 11677841947SLeila Ghaffari char ceed_resource[PETSC_MAX_PATH_LEN]; // libCEED backend 11777841947SLeila Ghaffari PetscInt degree; 11877841947SLeila Ghaffari PetscInt q_extra; 119544be873SJed Brown // Solver arguments 120544be873SJed Brown MatType amat_type; 121544be873SJed Brown PetscBool pmat_pbdiagonal; 12277841947SLeila Ghaffari // Post-processing arguments 12337cbb16aSJed Brown PetscInt checkpoint_interval; 12477841947SLeila Ghaffari PetscInt viz_refine; 12577841947SLeila Ghaffari PetscInt cont_steps; 1264de8550aSJed Brown PetscReal cont_time; 12769293791SJames Wright char cont_file[PETSC_MAX_PATH_LEN]; 12869293791SJames Wright char cont_time_file[PETSC_MAX_PATH_LEN]; 12977841947SLeila Ghaffari char output_dir[PETSC_MAX_PATH_LEN]; 13069293791SJames Wright PetscBool add_stepnum2bin; 13137cbb16aSJed Brown PetscBool checkpoint_vtk; 13277841947SLeila Ghaffari // Problem type arguments 13377841947SLeila Ghaffari PetscFunctionList problems; 13477841947SLeila Ghaffari char problem_name[PETSC_MAX_PATH_LEN]; 13577841947SLeila Ghaffari // Test mode arguments 1368fb33541SJames Wright TestType test_type; 13777841947SLeila Ghaffari PetscScalar test_tol; 138b7d66439SJames Wright char test_file_path[PETSC_MAX_PATH_LEN]; 139b7d66439SJames Wright // Turbulent spanwise statistics 140b7d66439SJames Wright PetscBool turb_spanstats_enable; 141b7d66439SJames Wright PetscInt turb_spanstats_collect_interval; 142b7d66439SJames Wright PetscInt turb_spanstats_viewer_interval; 143b7d66439SJames Wright PetscViewer turb_spanstats_viewer; 144b7d66439SJames Wright PetscViewerFormat turb_spanstats_viewer_format; 145ca69d878SAdeleke O. Bankole // Wall forces 146ca69d878SAdeleke O. Bankole struct { 147ca69d878SAdeleke O. Bankole PetscInt num_wall; 148ca69d878SAdeleke O. Bankole PetscInt *walls; 149ca69d878SAdeleke O. Bankole PetscViewer viewer; 150ca69d878SAdeleke O. Bankole PetscViewerFormat viewer_format; 151ca69d878SAdeleke O. Bankole PetscBool header_written; 152ca69d878SAdeleke O. Bankole } wall_forces; 15319ffbc25SJames Wright // Subgrid Stress Model 15419ffbc25SJames Wright SGSModelType sgs_model_type; 1554e9802d1SJames Wright // Differential Filtering 1564e9802d1SJames Wright PetscBool diff_filter_monitor; 1572526956eSJames Wright MeshTransformType mesh_transform_type; 15877841947SLeila Ghaffari }; 15977841947SLeila Ghaffari 16077841947SLeila Ghaffari // libCEED data struct 16177841947SLeila Ghaffari struct CeedData_private { 16277841947SLeila Ghaffari CeedVector x_coord, q_data; 1632b730f8bSJeremy L Thompson CeedBasis basis_x, basis_xc, basis_q, basis_x_sur, basis_q_sur, basis_xc_sur; 16477841947SLeila Ghaffari CeedElemRestriction elem_restr_x, elem_restr_q, elem_restr_qd_i; 1655263e9c6SJames Wright CeedOperator op_setup_vol; 1665263e9c6SJames Wright OperatorApplyContext op_ics_ctx; 167d310b3d3SAdeleke O. Bankole CeedQFunction qf_setup_vol, qf_ics, qf_rhs_vol, qf_ifunction_vol, qf_setup_sur, qf_apply_inflow, qf_apply_inflow_jacobian, qf_apply_outflow, 168d310b3d3SAdeleke O. Bankole qf_apply_outflow_jacobian, qf_apply_freestream, qf_apply_freestream_jacobian; 16977841947SLeila Ghaffari }; 17077841947SLeila Ghaffari 17151ee423eSJames Wright typedef struct { 17251ee423eSJames Wright DM dm; 1731737222fSJames Wright PetscSF sf; // For communicating child data to parents 174ed331efdSJames Wright OperatorApplyContext op_stats_collect_ctx, op_proj_rhs_ctx; 17551ee423eSJames Wright PetscInt num_comp_stats; 176ed331efdSJames Wright Vec Child_Stats_loc, Parent_Stats_loc; 177a175e481SJames Wright KSP ksp; // For the L^2 projection solve 178a175e481SJames Wright CeedScalar span_width; // spanwise width of the child domain 179b7d66439SJames Wright PetscBool do_mms_test; 1804021610dSJames Wright OperatorApplyContext mms_error_ctx; 181495b9769SJames Wright CeedContextFieldLabel solution_time_label, previous_time_label; 182cbef7084SJames Wright } SpanStatsData; 18351ee423eSJames Wright 184999ff5c7SJames Wright typedef struct { 185999ff5c7SJames Wright DM dm; 186999ff5c7SJames Wright PetscInt num_comp; 187999ff5c7SJames Wright OperatorApplyContext l2_rhs_ctx; 188999ff5c7SJames Wright KSP ksp; 189999ff5c7SJames Wright } *NodalProjectionData; 190999ff5c7SJames Wright 1919a17443dSJames Wright typedef struct { 1929a17443dSJames Wright DM dm_sgs; 1939a17443dSJames Wright PetscInt num_comp_sgs; 194be34b3b7SJames Wright OperatorApplyContext op_nodal_evaluation_ctx, op_sgs_apply_ctx; 1959a17443dSJames Wright CeedVector sgs_nodal_ceed; 196cbef7084SJames Wright } *SgsDDData; 1979a17443dSJames Wright 1984e9802d1SJames Wright typedef struct { 199ee3b213aSJames Wright DM dm_dd_training; 200ee3b213aSJames Wright PetscInt num_comp_dd_inputs, write_data_interval; 201ee3b213aSJames Wright OperatorApplyContext op_training_data_calc_ctx; 202ee3b213aSJames Wright NodalProjectionData filtered_grad_velo_proj; 203ee3b213aSJames Wright size_t training_data_array_dims[2]; 204ee3b213aSJames Wright PetscBool overwrite_training_data; 205ee3b213aSJames Wright } *SGS_DD_TrainingData; 206ee3b213aSJames Wright 207ee3b213aSJames Wright typedef struct { 2084e9802d1SJames Wright DM dm_filter; 20981530087SJames Wright PetscInt num_filtered_fields; 21081530087SJames Wright CeedInt *num_field_components; 211051427eeSJames Wright PetscInt field_prim_state, field_velo_prod; 2124e9802d1SJames Wright OperatorApplyContext op_rhs_ctx; 2134e9802d1SJames Wright KSP ksp; 2142029a677SJames Wright PetscBool do_mms_test; 2154e9802d1SJames Wright } *DiffFilterData; 2164e9802d1SJames Wright 2178146534cSJames Wright typedef struct { 2188146534cSJames Wright void *client; 2198146534cSJames Wright char rank_id_name[16]; 2208146534cSJames Wright PetscInt collocated_database_num_ranks; 2218146534cSJames Wright } *SmartSimData; 2228146534cSJames Wright 22377841947SLeila Ghaffari // PETSc user data 22477841947SLeila Ghaffari struct User_private { 22577841947SLeila Ghaffari MPI_Comm comm; 22677841947SLeila Ghaffari DM dm; 22777841947SLeila Ghaffari DM dm_viz; 22877841947SLeila Ghaffari Mat interp_viz; 22977841947SLeila Ghaffari Ceed ceed; 23077841947SLeila Ghaffari Units units; 231186595e6SJames Wright Vec M_inv, Q_loc, Q_dot_loc; 23277841947SLeila Ghaffari Physics phys; 23377841947SLeila Ghaffari AppCtx app_ctx; 2342b730f8bSJeremy L Thompson CeedVector q_ceed, q_dot_ceed, g_ceed, coo_values_amat, coo_values_pmat, x_ceed; 2359ad5e8e4SJames Wright CeedOperator op_rhs_vol, op_ifunction_vol, op_ifunction, op_ijacobian; 2369ad5e8e4SJames Wright OperatorApplyContext op_rhs_ctx, op_strong_bc_ctx; 237e334ad8fSJed Brown bool matrices_set_up; 23815637395SJames Wright CeedScalar time_bc_set; 239cbef7084SJames Wright SpanStatsData spanstats; 240999ff5c7SJames Wright NodalProjectionData grad_velo_proj; 241cbef7084SJames Wright SgsDDData sgs_dd_data; 2424e9802d1SJames Wright DiffFilterData diff_filter; 2438146534cSJames Wright SmartSimData smartsim; 244ee3b213aSJames Wright SGS_DD_TrainingData sgs_dd_train; 24577841947SLeila Ghaffari }; 24677841947SLeila Ghaffari 24777841947SLeila Ghaffari // Units 24877841947SLeila Ghaffari struct Units_private { 24977841947SLeila Ghaffari // fundamental units 25077841947SLeila Ghaffari PetscScalar meter; 25177841947SLeila Ghaffari PetscScalar kilogram; 25277841947SLeila Ghaffari PetscScalar second; 25377841947SLeila Ghaffari PetscScalar Kelvin; 25477841947SLeila Ghaffari // derived units 25577841947SLeila Ghaffari PetscScalar Pascal; 25677841947SLeila Ghaffari PetscScalar J_per_kg_K; 25777841947SLeila Ghaffari PetscScalar m_per_squared_s; 25877841947SLeila Ghaffari PetscScalar W_per_m_K; 25977841947SLeila Ghaffari PetscScalar Joule; 26077841947SLeila Ghaffari }; 26177841947SLeila Ghaffari 26277841947SLeila Ghaffari // Boundary conditions 26377841947SLeila Ghaffari struct SimpleBC_private { 2642fe7aee7SLeila Ghaffari PetscInt num_wall, // Number of faces with wall BCs 2652fe7aee7SLeila Ghaffari wall_comps[5], // An array of constrained component numbers 2662fe7aee7SLeila Ghaffari num_comps, 2672fe7aee7SLeila Ghaffari num_slip[3], // Number of faces with slip BCs 2682b730f8bSJeremy L Thompson num_inflow, num_outflow, num_freestream; 269f4ca79c2SJames Wright PetscInt walls[16], slips[3][16], inflows[16], outflows[16], freestreams[16]; 27077841947SLeila Ghaffari PetscBool user_bc; 27177841947SLeila Ghaffari }; 27277841947SLeila Ghaffari 27377841947SLeila Ghaffari // Struct that contains all enums and structs used for the physics of all problems 27477841947SLeila Ghaffari struct Physics_private { 27577841947SLeila Ghaffari PetscBool implicit; 27697baf651SJames Wright StateVariable state_var; 27711436a05SJames Wright CeedContextFieldLabel solution_time_label; 278cd4035ffSJames Wright CeedContextFieldLabel stg_solution_time_label; 27988626eedSJames Wright CeedContextFieldLabel timestep_size_label; 280841e4c73SJed Brown CeedContextFieldLabel ics_time_label; 281e334ad8fSJed Brown CeedContextFieldLabel ijacobian_time_shift_label; 28277841947SLeila Ghaffari }; 28377841947SLeila Ghaffari 28491e5af17SJed Brown typedef struct { 28591e5af17SJed Brown CeedQFunctionUser qfunction; 28691e5af17SJed Brown const char *qfunction_loc; 287841e4c73SJed Brown CeedQFunctionContext qfunction_context; 28891e5af17SJed Brown } ProblemQFunctionSpec; 28991e5af17SJed Brown 29077841947SLeila Ghaffari // Problem specific data 291841e4c73SJed Brown typedef struct ProblemData_private ProblemData; 292841e4c73SJed Brown struct ProblemData_private { 293e334ad8fSJed Brown CeedInt dim, q_data_size_vol, q_data_size_sur, jac_data_size_sur; 2941864f1c2SLeila Ghaffari CeedScalar dm_scale; 2952b730f8bSJeremy L Thompson ProblemQFunctionSpec setup_vol, setup_sur, ics, apply_vol_rhs, apply_vol_ifunction, apply_vol_ijacobian, apply_inflow, apply_outflow, 2962b730f8bSJeremy L Thompson apply_freestream, apply_inflow_jacobian, apply_outflow_jacobian, apply_freestream_jacobian; 29777841947SLeila Ghaffari bool non_zero_time; 2983722cd23SJames Wright PetscBool bc_from_ics, use_strong_bc_ceed; 299367c849eSJames Wright PetscErrorCode (*print_info)(User, ProblemData *, AppCtx); 300841e4c73SJed Brown }; 30177841947SLeila Ghaffari 302841e4c73SJed Brown extern int FreeContextPetsc(void *); 303841e4c73SJed Brown 30477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 30577841947SLeila Ghaffari // Set up problems 30677841947SLeila Ghaffari // ----------------------------------------------------------------------------- 30777841947SLeila Ghaffari // Set up function for each problem 30814712a6bSJames Wright extern PetscErrorCode NS_TAYLOR_GREEN(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 309530ad8c4SKenneth E. Jansen extern PetscErrorCode NS_GAUSSIAN_WAVE(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31046de7363SJames Wright extern PetscErrorCode NS_CHANNEL(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31146de7363SJames Wright extern PetscErrorCode NS_BLASIUS(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31246de7363SJames Wright extern PetscErrorCode NS_NEWTONIAN_IG(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31346de7363SJames Wright extern PetscErrorCode NS_DENSITY_CURRENT(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31446de7363SJames Wright extern PetscErrorCode NS_EULER_VORTEX(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31546de7363SJames Wright extern PetscErrorCode NS_SHOCKTUBE(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31646de7363SJames Wright extern PetscErrorCode NS_ADVECTION(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31746de7363SJames Wright extern PetscErrorCode NS_ADVECTION2D(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31877841947SLeila Ghaffari 31977841947SLeila Ghaffari // Print function for each problem 320367c849eSJames Wright extern PetscErrorCode PRINT_NEWTONIAN(User user, ProblemData *problem, AppCtx app_ctx); 32177841947SLeila Ghaffari 322367c849eSJames Wright extern PetscErrorCode PRINT_EULER_VORTEX(User user, ProblemData *problem, AppCtx app_ctx); 32377841947SLeila Ghaffari 324367c849eSJames Wright extern PetscErrorCode PRINT_SHOCKTUBE(User user, ProblemData *problem, AppCtx app_ctx); 325019b7682STimothy Aiken 326367c849eSJames Wright extern PetscErrorCode PRINT_ADVECTION(User user, ProblemData *problem, AppCtx app_ctx); 32777841947SLeila Ghaffari 328367c849eSJames Wright extern PetscErrorCode PRINT_ADVECTION2D(User user, ProblemData *problem, AppCtx app_ctx); 32977841947SLeila Ghaffari 3302e31f396SJames Wright PetscErrorCode PrintRunInfo(User user, Physics phys_ctx, ProblemData *problem, MPI_Comm comm); 3312e31f396SJames Wright 33277841947SLeila Ghaffari // ----------------------------------------------------------------------------- 33377841947SLeila Ghaffari // libCEED functions 33477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 33577841947SLeila Ghaffari // Utility function to create local CEED restriction 336431cd09aSJames Wright PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height, DMLabel domain_label, CeedInt label_value, PetscInt dm_field, 337431cd09aSJames Wright CeedElemRestriction *elem_restr); 33877841947SLeila Ghaffari 339bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field, 340bb85d312SJames Wright CeedElemRestriction *restriction); 341bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCoordinateCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 342bb85d312SJames Wright CeedElemRestriction *restriction); 343bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionQDataCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 344bb85d312SJames Wright PetscInt q_data_size, CeedElemRestriction *restriction); 345bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCollocatedCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 346bb85d312SJames Wright PetscInt q_data_size, CeedElemRestriction *restriction); 34777841947SLeila Ghaffari 3480814d5a7SKenneth E. Jansen PetscErrorCode CreateBasisFromPlex(Ceed ceed, DM dm, DMLabel domain_label, CeedInt label_value, CeedInt height, CeedInt dm_field, CeedBasis *basis); 3490814d5a7SKenneth E. Jansen 35077841947SLeila Ghaffari // Utility function to create CEED Composite Operator for the entire domain 3512b730f8bSJeremy L Thompson PetscErrorCode CreateOperatorForDomain(Ceed ceed, DM dm, SimpleBC bc, CeedData ceed_data, Physics phys, CeedOperator op_apply_vol, 3522b730f8bSJeremy L Thompson CeedOperator op_apply_ijacobian_vol, CeedInt height, CeedInt P_sur, CeedInt Q_sur, CeedInt q_data_size_sur, 3532b730f8bSJeremy L Thompson CeedInt jac_data_size_sur, CeedOperator *op_apply, CeedOperator *op_apply_ijacobian); 35477841947SLeila Ghaffari 3552b730f8bSJeremy L Thompson PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user, AppCtx app_ctx, ProblemData *problem, SimpleBC bc); 35677841947SLeila Ghaffari 35777841947SLeila Ghaffari // ----------------------------------------------------------------------------- 35877841947SLeila Ghaffari // Time-stepping functions 35977841947SLeila Ghaffari // ----------------------------------------------------------------------------- 36077841947SLeila Ghaffari // Compute mass matrix for explicit scheme 3612b730f8bSJeremy L Thompson PetscErrorCode ComputeLumpedMassMatrix(Ceed ceed, DM dm, CeedData ceed_data, Vec M); 36277841947SLeila Ghaffari 36377841947SLeila Ghaffari // RHS (Explicit time-stepper) function setup 36477841947SLeila Ghaffari PetscErrorCode RHS_NS(TS ts, PetscReal t, Vec Q, Vec G, void *user_data); 36577841947SLeila Ghaffari 36677841947SLeila Ghaffari // Implicit time-stepper function setup 3672b730f8bSJeremy L Thompson PetscErrorCode IFunction_NS(TS ts, PetscReal t, Vec Q, Vec Q_dot, Vec G, void *user_data); 36877841947SLeila Ghaffari 36977841947SLeila Ghaffari // User provided TS Monitor 3702b730f8bSJeremy L Thompson PetscErrorCode TSMonitor_NS(TS ts, PetscInt step_no, PetscReal time, Vec Q, void *ctx); 37177841947SLeila Ghaffari 37277841947SLeila Ghaffari // TS: Create, setup, and solve 3732b730f8bSJeremy L Thompson PetscErrorCode TSSolve_NS(DM dm, User user, AppCtx app_ctx, Physics phys, Vec *Q, PetscScalar *f_time, TS *ts); 37477841947SLeila Ghaffari 375a0b9a424SJames Wright // Update Boundary Values when time has changed 376a0b9a424SJames Wright PetscErrorCode UpdateBoundaryValues(User user, Vec Q_loc, PetscReal t); 377a0b9a424SJames Wright 37877841947SLeila Ghaffari // ----------------------------------------------------------------------------- 37977841947SLeila Ghaffari // Setup DM 38077841947SLeila Ghaffari // ----------------------------------------------------------------------------- 3811864f1c2SLeila Ghaffari // Create mesh 3822b730f8bSJeremy L Thompson PetscErrorCode CreateDM(MPI_Comm comm, ProblemData *problem, MatType, VecType, DM *dm); 38377841947SLeila Ghaffari 38477841947SLeila Ghaffari // Set up DM 3850814d5a7SKenneth E. Jansen PetscErrorCode SetUpDM(DM dm, ProblemData *problem, PetscInt degree, PetscInt q_extra, SimpleBC bc, Physics phys); 386d68a66c4SJames Wright PetscErrorCode DMSetupByOrderBegin_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, 38785df0564SJames Wright PetscInt num_fields, const PetscInt *field_sizes, DM dm); 388d68a66c4SJames Wright PetscErrorCode DMSetupByOrderEnd_FEM(PetscBool setup_coords, DM dm); 389d68a66c4SJames Wright PetscErrorCode DMSetupByOrder_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, 39085df0564SJames Wright PetscInt num_fields, const PetscInt *field_sizes, DM dm); 39177841947SLeila Ghaffari 39277841947SLeila Ghaffari // Refine DM for high-order viz 3932b730f8bSJeremy L Thompson PetscErrorCode VizRefineDM(DM dm, User user, ProblemData *problem, SimpleBC bc, Physics phys); 39477841947SLeila Ghaffari 39577841947SLeila Ghaffari // ----------------------------------------------------------------------------- 39677841947SLeila Ghaffari // Process command line options 39777841947SLeila Ghaffari // ----------------------------------------------------------------------------- 39877841947SLeila Ghaffari // Register problems to be available on the command line 39977841947SLeila Ghaffari PetscErrorCode RegisterProblems_NS(AppCtx app_ctx); 40077841947SLeila Ghaffari 40177841947SLeila Ghaffari // Process general command line options 4022b730f8bSJeremy L Thompson PetscErrorCode ProcessCommandLineOptions(MPI_Comm comm, AppCtx app_ctx, SimpleBC bc); 40377841947SLeila Ghaffari 40477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 40577841947SLeila Ghaffari // Miscellaneous utility functions 40677841947SLeila Ghaffari // ----------------------------------------------------------------------------- 4072b730f8bSJeremy L Thompson PetscErrorCode ICs_FixMultiplicity(DM dm, CeedData ceed_data, User user, Vec Q_loc, Vec Q, CeedScalar time); 40877841947SLeila Ghaffari 4093c9e7ad1SJames Wright PetscErrorCode DMPlexInsertBoundaryValues_FromICs(DM dm, PetscBool insert_essential, Vec Q_loc, PetscReal time, Vec face_geom_FVM, Vec cell_geom_FVM, 4102b730f8bSJeremy L Thompson Vec grad_FVM); 41177841947SLeila Ghaffari 41277841947SLeila Ghaffari // Compare reference solution values with current test run for CI 4133c9e7ad1SJames Wright PetscErrorCode RegressionTest(AppCtx app_ctx, Vec Q); 41477841947SLeila Ghaffari 41577841947SLeila Ghaffari // Get error for problems with exact solutions 4163c9e7ad1SJames Wright PetscErrorCode PrintError(CeedData ceed_data, DM dm, User user, Vec Q, PetscScalar final_time); 41777841947SLeila Ghaffari 41877841947SLeila Ghaffari // Post-processing 4193c9e7ad1SJames Wright PetscErrorCode PostProcess(TS ts, CeedData ceed_data, DM dm, ProblemData *problem, User user, Vec Q, PetscScalar final_time); 42077841947SLeila Ghaffari 42177841947SLeila Ghaffari // -- Gather initial Q values in case of continuation of simulation 42277841947SLeila Ghaffari PetscErrorCode SetupICsFromBinary(MPI_Comm comm, AppCtx app_ctx, Vec Q); 42377841947SLeila Ghaffari 42477841947SLeila Ghaffari // Record boundary values from initial condition 4253c9e7ad1SJames Wright PetscErrorCode SetBCsFromICs(DM dm, Vec Q, Vec Q_loc); 42677841947SLeila Ghaffari 4274de8550aSJed Brown // Versioning token for binary checkpoints 4280de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN; // for backwards compatibility 4290de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_32; 4300de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_64; 4314de8550aSJed Brown 432ef080ff9SJames Wright // Create appropriate mass qfunction based on number of components N 433ef080ff9SJames Wright PetscErrorCode CreateMassQFunction(Ceed ceed, CeedInt N, CeedInt q_data_size, CeedQFunction *qf); 434ef080ff9SJames Wright 435999ff5c7SJames Wright PetscErrorCode NodalProjectionDataDestroy(NodalProjectionData context); 436999ff5c7SJames Wright 437cbef7084SJames Wright PetscErrorCode PhastaDatFileOpen(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2], 4388b892a05SJames Wright FILE **fp); 4398b892a05SJames Wright 440cbef7084SJames Wright PetscErrorCode PhastaDatFileGetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows); 4418b892a05SJames Wright 442cbef7084SJames Wright PetscErrorCode PhastaDatFileReadToArrayReal(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscReal array[]); 4434cc9442bSJames Wright 444457e73b2SJames Wright PetscErrorCode IntArrayC2P(PetscInt num_entries, CeedInt **array_ceed, PetscInt **array_petsc); 445457e73b2SJames Wright PetscErrorCode IntArrayP2C(PetscInt num_entries, PetscInt **array_petsc, CeedInt **array_ceed); 446457e73b2SJames Wright 4478b892a05SJames Wright // ----------------------------------------------------------------------------- 4488b892a05SJames Wright // Turbulence Statistics Collection Functions 4498b892a05SJames Wright // ----------------------------------------------------------------------------- 4508b892a05SJames Wright 451f5452247SJames Wright PetscErrorCode TurbulenceStatisticsSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 452f5452247SJames Wright PetscErrorCode TSMonitor_TurbulenceStatistics(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); 453f5452247SJames Wright PetscErrorCode TurbulenceStatisticsDestroy(User user, CeedData ceed_data); 454fd170fd0SJames Wright 45577841947SLeila Ghaffari // ----------------------------------------------------------------------------- 4564cc9442bSJames Wright // Data-Driven Subgrid Stress (DD-SGS) Modeling Functions 4574cc9442bSJames Wright // ----------------------------------------------------------------------------- 4584cc9442bSJames Wright 459cbef7084SJames Wright PetscErrorCode SgsDDModelSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 460cbef7084SJames Wright PetscErrorCode SgsDDDataDestroy(SgsDDData sgs_dd_data); 461cbef7084SJames Wright PetscErrorCode SgsDDModelApplyIFunction(User user, const Vec Q_loc, Vec G_loc); 4627618d7b7SJames Wright PetscErrorCode VelocityGradientProjectionSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem, StateVariable state_var_input, 4637618d7b7SJames Wright CeedElemRestriction elem_restr_input, CeedBasis basis_input, NodalProjectionData *pgrad_velo_proj); 4647618d7b7SJames Wright PetscErrorCode VelocityGradientProjectionApply(NodalProjectionData grad_velo_proj, Vec Q_loc, Vec VelocityGradient); 465052409adSJames Wright PetscErrorCode GridAnisotropyTensorProjectionSetupApply(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, 466052409adSJames Wright CeedVector *grid_aniso_vector); 467900aec75SJames Wright PetscErrorCode GridAnisotropyTensorCalculateCollocatedVector(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, 468900aec75SJames Wright CeedVector *aniso_colloc_ceed, PetscInt *num_comp_aniso); 4694cc9442bSJames Wright 4704cc9442bSJames Wright // ----------------------------------------------------------------------------- 471dada6cc0SJames Wright // Boundary Condition Related Functions 472dada6cc0SJames Wright // ----------------------------------------------------------------------------- 473dada6cc0SJames Wright 474dada6cc0SJames Wright // Setup StrongBCs that use QFunctions 47566170c20SJames Wright PetscErrorCode SetupStrongBC_Ceed(Ceed ceed, CeedData ceed_data, DM dm, User user, ProblemData *problem, SimpleBC bc); 476b7c563b6SJeremy L Thompson 477d310b3d3SAdeleke O. Bankole PetscErrorCode FreestreamBCSetup(ProblemData *problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); 4788a94a473SJed Brown PetscErrorCode OutflowBCSetup(ProblemData *problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); 4792b730f8bSJeremy L Thompson 4804e9802d1SJames Wright // ----------------------------------------------------------------------------- 4814e9802d1SJames Wright // Differential Filtering Functions 4824e9802d1SJames Wright // ----------------------------------------------------------------------------- 4834e9802d1SJames Wright 4844e9802d1SJames Wright PetscErrorCode DifferentialFilterSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 4854e9802d1SJames Wright PetscErrorCode DifferentialFilterDataDestroy(DiffFilterData diff_filter); 4864e9802d1SJames Wright PetscErrorCode TSMonitor_DifferentialFilter(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); 4874e9802d1SJames Wright PetscErrorCode DifferentialFilterApply(User user, const PetscReal solution_time, const Vec Q, Vec Filtered_Solution); 488cbef7084SJames Wright PetscErrorCode DifferentialFilterMmsICSetup(ProblemData *problem); 4894e9802d1SJames Wright 4908146534cSJames Wright // ----------------------------------------------------------------------------- 4918146534cSJames Wright // SGS Data-Driven Training via SmartSim 4928146534cSJames Wright // ----------------------------------------------------------------------------- 4938146534cSJames Wright PetscErrorCode SmartSimSetup(User user); 494ee3b213aSJames Wright PetscErrorCode SGS_DD_TrainingSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 495ee3b213aSJames Wright PetscErrorCode TSMonitor_SGS_DD_Training(TS ts, PetscInt step_num, PetscReal solution_time, Vec Q, void *ctx); 496*1a7db67cSJames Wright PetscErrorCode TSPostStep_SGS_DD_Training(TS ts); 497ee3b213aSJames Wright PetscErrorCode SGS_DD_TrainingDataDestroy(SGS_DD_TrainingData sgs_dd_train); 4988146534cSJames Wright 499b7c563b6SJeremy L Thompson #endif // libceed_fluids_examples_navier_stokes_h 500