xref: /libCEED/examples/fluids/navierstokes.h (revision 3a10b0eea181dc293479a0dbf82d5df1dcd22873)
13d8e8822SJeremy L Thompson // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors.
23d8e8822SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details.
377841947SLeila Ghaffari //
43d8e8822SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause
577841947SLeila Ghaffari //
63d8e8822SJeremy L Thompson // This file is part of CEED:  http://github.com/ceed
777841947SLeila Ghaffari 
8b7c563b6SJeremy L Thompson #ifndef libceed_fluids_examples_navier_stokes_h
9b7c563b6SJeremy L Thompson #define libceed_fluids_examples_navier_stokes_h
1077841947SLeila Ghaffari 
11d0593705SJames Wright #include <ceed-utils.h>
1277841947SLeila Ghaffari #include <ceed.h>
1391c97f41SJames Wright #include <mat-ceed.h>
1477841947SLeila Ghaffari #include <petscts.h>
1577841947SLeila Ghaffari #include <stdbool.h>
162b730f8bSJeremy L Thompson 
174021610dSJames Wright #include "./include/petsc_ops.h"
1897baf651SJames Wright #include "qfunctions/newtonian_types.h"
192b730f8bSJeremy L Thompson #include "qfunctions/stabilization_types.h"
2077841947SLeila Ghaffari 
21d31f425aSJeremy L Thompson #if PETSC_VERSION_LT(3, 20, 0)
22d31f425aSJeremy L Thompson #error "PETSc v3.20 or later is required"
2377841947SLeila Ghaffari #endif
2477841947SLeila Ghaffari 
2549a40c8aSKenneth E. Jansen #if PETSC_VERSION_LT(3, 21, 0)
2649a40c8aSKenneth E. Jansen #define DMSetCoordinateDisc(a, b, c) DMProjectCoordinates(a, b)
27342228c7SAlex Lindsay #define DMPlexFilter(a, b, c, d, e, f, g) DMPlexFilter(a, b, c, g)
2849a40c8aSKenneth E. Jansen #endif
2949a40c8aSKenneth E. Jansen 
3077841947SLeila Ghaffari // -----------------------------------------------------------------------------
3177841947SLeila Ghaffari // Enums
3277841947SLeila Ghaffari // -----------------------------------------------------------------------------
3377841947SLeila Ghaffari 
3477841947SLeila Ghaffari // Euler - test cases
3577841947SLeila Ghaffari typedef enum {
36bc7bbd5dSLeila Ghaffari   EULER_TEST_ISENTROPIC_VORTEX = 0,
3777841947SLeila Ghaffari   EULER_TEST_1                 = 1,
3877841947SLeila Ghaffari   EULER_TEST_2                 = 2,
3977841947SLeila Ghaffari   EULER_TEST_3                 = 3,
4077841947SLeila Ghaffari   EULER_TEST_4                 = 4,
4132f166c6SLeila Ghaffari   EULER_TEST_5                 = 5,
4277841947SLeila Ghaffari } EulerTestType;
432b730f8bSJeremy L Thompson static const char *const EulerTestTypes[] = {"isentropic_vortex", "test_1",      "test_2", "test_3", "test_4", "test_5",
442b730f8bSJeremy L Thompson                                              "EulerTestType",     "EULER_TEST_", NULL};
4577841947SLeila Ghaffari 
46700ae941SJames Wright // Advection - Wind types
47700ae941SJames Wright static const char *const WindTypes[] = {"rotation", "translation", "WindType", "WIND_", NULL};
48700ae941SJames Wright 
497b77ddfdSJames Wright // Advection - Initial Condition Types
507b77ddfdSJames Wright static const char *const AdvectionICTypes[] = {"sphere", "cylinder", "cosine_hill", "skew", "AdvectionICType", "ADVECTIONIC_", NULL};
51700ae941SJames Wright 
52700ae941SJames Wright // Advection - Bubble Continuity Types
5393639ffbSJames Wright static const char *const BubbleContinuityTypes[] = {"smooth", "back_sharp", "thick", "cosine", "BubbleContinuityType", "BUBBLE_CONTINUITY_", NULL};
54700ae941SJames Wright 
5577841947SLeila Ghaffari // Stabilization methods
562b730f8bSJeremy L Thompson static const char *const StabilizationTypes[] = {"none", "SU", "SUPG", "StabilizationType", "STAB_", NULL};
5777841947SLeila Ghaffari 
58b18328c4SJames Wright // Stabilization tau constants
59b18328c4SJames Wright static const char *const StabilizationTauTypes[] = {"Ctau", "AdvDiff_Shakib", "AdvDiff_Shakib_P", "StabilizationTauType", "STAB_TAU_", NULL};
60b18328c4SJames Wright 
6151b00d91SJames Wright // Test mode type
628fb33541SJames Wright typedef enum {
638fb33541SJames Wright   TESTTYPE_NONE           = 0,
648fb33541SJames Wright   TESTTYPE_SOLVER         = 1,
658fb33541SJames Wright   TESTTYPE_TURB_SPANSTATS = 2,
66970fa48bSJames Wright   TESTTYPE_DIFF_FILTER    = 3,
678fb33541SJames Wright } TestType;
68970fa48bSJames Wright static const char *const TestTypes[] = {"none", "solver", "turb_spanstats", "diff_filter", "TestType", "TESTTYPE_", NULL};
698fb33541SJames Wright 
702526956eSJames Wright // Subgrid-Stress mode type
7119ffbc25SJames Wright typedef enum {
7219ffbc25SJames Wright   SGS_MODEL_NONE        = 0,
7319ffbc25SJames Wright   SGS_MODEL_DATA_DRIVEN = 1,
7419ffbc25SJames Wright } SGSModelType;
7519ffbc25SJames Wright static const char *const SGSModelTypes[] = {"none", "data_driven", "SGSModelType", "SGS_MODEL_", NULL};
7619ffbc25SJames Wright 
772526956eSJames Wright // Mesh transformation type
782526956eSJames Wright typedef enum {
792526956eSJames Wright   MESH_TRANSFORM_NONE      = 0,
802526956eSJames Wright   MESH_TRANSFORM_PLATEMESH = 1,
812526956eSJames Wright } MeshTransformType;
822526956eSJames Wright static const char *const MeshTransformTypes[] = {"none", "platemesh", "MeshTransformType", "MESH_TRANSFORM_", NULL};
832526956eSJames Wright 
84bd882c8aSJames Wright static const char *const DifferentialFilterDampingFunctions[] = {
85bd882c8aSJames Wright     "none", "van_driest", "mms", "DifferentialFilterDampingFunction", "DIFF_FILTER_DAMP_", NULL};
86bd882c8aSJames Wright 
8777841947SLeila Ghaffari // -----------------------------------------------------------------------------
8875d1798cSJames Wright // Log Events
8975d1798cSJames Wright // -----------------------------------------------------------------------------
9075d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorApply;
9175d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssemble;
9275d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssembleDiagonal;
9375d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssemblePointBlockDiagonal;
94844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Init;
95844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Meta;
96844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Train;
97844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_TrainDataCompute;
983737f832SJames Wright extern PetscLogEvent FLUIDS_DifferentialFilter;
993737f832SJames Wright extern PetscLogEvent FLUIDS_VelocityGradientProjection;
10075d1798cSJames Wright PetscErrorCode       RegisterLogEvents();
10175d1798cSJames Wright 
10275d1798cSJames Wright // -----------------------------------------------------------------------------
10377841947SLeila Ghaffari // Structs
10477841947SLeila Ghaffari // -----------------------------------------------------------------------------
10577841947SLeila Ghaffari // Structs declarations
10677841947SLeila Ghaffari typedef struct AppCtx_private   *AppCtx;
10777841947SLeila Ghaffari typedef struct CeedData_private *CeedData;
10877841947SLeila Ghaffari typedef struct User_private     *User;
10977841947SLeila Ghaffari typedef struct Units_private    *Units;
11077841947SLeila Ghaffari typedef struct SimpleBC_private *SimpleBC;
11177841947SLeila Ghaffari typedef struct Physics_private  *Physics;
11277841947SLeila Ghaffari 
11377841947SLeila Ghaffari // Application context from user command line options
11477841947SLeila Ghaffari struct AppCtx_private {
11577841947SLeila Ghaffari   // libCEED arguments
11677841947SLeila Ghaffari   char     ceed_resource[PETSC_MAX_PATH_LEN];  // libCEED backend
11777841947SLeila Ghaffari   PetscInt degree;
11877841947SLeila Ghaffari   PetscInt q_extra;
119544be873SJed Brown   // Solver arguments
120544be873SJed Brown   MatType amat_type;
12177841947SLeila Ghaffari   // Post-processing arguments
12237cbb16aSJed Brown   PetscInt  checkpoint_interval;
12377841947SLeila Ghaffari   PetscInt  viz_refine;
12477841947SLeila Ghaffari   PetscInt  cont_steps;
1254de8550aSJed Brown   PetscReal cont_time;
12669293791SJames Wright   char      cont_file[PETSC_MAX_PATH_LEN];
12769293791SJames Wright   char      cont_time_file[PETSC_MAX_PATH_LEN];
12877841947SLeila Ghaffari   char      output_dir[PETSC_MAX_PATH_LEN];
12969293791SJames Wright   PetscBool add_stepnum2bin;
13037cbb16aSJed Brown   PetscBool checkpoint_vtk;
13177841947SLeila Ghaffari   // Problem type arguments
13277841947SLeila Ghaffari   PetscFunctionList problems;
13377841947SLeila Ghaffari   char              problem_name[PETSC_MAX_PATH_LEN];
13477841947SLeila Ghaffari   // Test mode arguments
1358fb33541SJames Wright   TestType    test_type;
13677841947SLeila Ghaffari   PetscScalar test_tol;
137b7d66439SJames Wright   char        test_file_path[PETSC_MAX_PATH_LEN];
138b7d66439SJames Wright   // Turbulent spanwise statistics
139b7d66439SJames Wright   PetscBool         turb_spanstats_enable;
140b7d66439SJames Wright   PetscInt          turb_spanstats_collect_interval;
141b7d66439SJames Wright   PetscInt          turb_spanstats_viewer_interval;
142b7d66439SJames Wright   PetscViewer       turb_spanstats_viewer;
143b7d66439SJames Wright   PetscViewerFormat turb_spanstats_viewer_format;
144ca69d878SAdeleke O. Bankole   // Wall forces
145ca69d878SAdeleke O. Bankole   struct {
146ca69d878SAdeleke O. Bankole     PetscInt          num_wall;
147ca69d878SAdeleke O. Bankole     PetscInt         *walls;
148ca69d878SAdeleke O. Bankole     PetscViewer       viewer;
149ca69d878SAdeleke O. Bankole     PetscViewerFormat viewer_format;
150ca69d878SAdeleke O. Bankole     PetscBool         header_written;
151ca69d878SAdeleke O. Bankole   } wall_forces;
15219ffbc25SJames Wright   // Subgrid Stress Model
15319ffbc25SJames Wright   SGSModelType sgs_model_type;
15428134cfaSJames Wright   PetscBool    sgs_train_enable;
1554e9802d1SJames Wright   // Differential Filtering
1564e9802d1SJames Wright   PetscBool         diff_filter_monitor;
1572526956eSJames Wright   MeshTransformType mesh_transform_type;
15877841947SLeila Ghaffari };
15977841947SLeila Ghaffari 
16077841947SLeila Ghaffari // libCEED data struct
16177841947SLeila Ghaffari struct CeedData_private {
16277841947SLeila Ghaffari   CeedVector           x_coord, q_data;
1632b730f8bSJeremy L Thompson   CeedBasis            basis_x, basis_xc, basis_q, basis_x_sur, basis_q_sur, basis_xc_sur;
16477841947SLeila Ghaffari   CeedElemRestriction  elem_restr_x, elem_restr_q, elem_restr_qd_i;
1655263e9c6SJames Wright   CeedOperator         op_setup_vol;
1665263e9c6SJames Wright   OperatorApplyContext op_ics_ctx;
167d310b3d3SAdeleke O. Bankole   CeedQFunction        qf_setup_vol, qf_ics, qf_rhs_vol, qf_ifunction_vol, qf_setup_sur, qf_apply_inflow, qf_apply_inflow_jacobian, qf_apply_outflow,
1689f844368SJames Wright       qf_apply_outflow_jacobian, qf_apply_freestream, qf_apply_freestream_jacobian, qf_apply_slip, qf_apply_slip_jacobian;
16977841947SLeila Ghaffari };
17077841947SLeila Ghaffari 
17151ee423eSJames Wright typedef struct {
17251ee423eSJames Wright   DM                    dm;
1731737222fSJames Wright   PetscSF               sf;  // For communicating child data to parents
174ed331efdSJames Wright   OperatorApplyContext  op_stats_collect_ctx, op_proj_rhs_ctx;
17551ee423eSJames Wright   PetscInt              num_comp_stats;
176ed331efdSJames Wright   Vec                   Child_Stats_loc, Parent_Stats_loc;
177a175e481SJames Wright   KSP                   ksp;         // For the L^2 projection solve
178a175e481SJames Wright   CeedScalar            span_width;  // spanwise width of the child domain
179b7d66439SJames Wright   PetscBool             do_mms_test;
1804021610dSJames Wright   OperatorApplyContext  mms_error_ctx;
181495b9769SJames Wright   CeedContextFieldLabel solution_time_label, previous_time_label;
182cbef7084SJames Wright } SpanStatsData;
18351ee423eSJames Wright 
184999ff5c7SJames Wright typedef struct {
185999ff5c7SJames Wright   DM                   dm;
186999ff5c7SJames Wright   PetscInt             num_comp;
187999ff5c7SJames Wright   OperatorApplyContext l2_rhs_ctx;
188999ff5c7SJames Wright   KSP                  ksp;
189999ff5c7SJames Wright } *NodalProjectionData;
190999ff5c7SJames Wright 
1916b3fb9aeSJames Wright typedef PetscErrorCode (*SgsDDNodalStressEval)(User user, Vec Q_loc, Vec VelocityGradient, Vec SGSNodal_loc);
1921250e899SJames Wright typedef PetscErrorCode (*SgsDDNodalStressInference)(Vec DD_Inputs_loc, Vec DD_Outputs_loc, void *ctx);
1939a17443dSJames Wright typedef struct {
1941250e899SJames Wright   DM                        dm_sgs, dm_dd_inputs, dm_dd_outputs;
1955f5d6789SAlex Lindsay   PetscInt                  num_comp_sgs, num_comp_inputs, num_comp_outputs;
1961250e899SJames Wright   OperatorApplyContext      op_nodal_evaluation_ctx, op_nodal_dd_inputs_ctx, op_nodal_dd_outputs_ctx, op_sgs_apply_ctx;
1971250e899SJames Wright   CeedVector                sgs_nodal_ceed, grad_velo_ceed;
1986b3fb9aeSJames Wright   SgsDDNodalStressEval      sgs_nodal_eval;
1991250e899SJames Wright   SgsDDNodalStressInference sgs_nodal_inference;
2001250e899SJames Wright   void                     *sgs_nodal_inference_ctx;
2011250e899SJames Wright   PetscErrorCode (*sgs_nodal_inference_ctx_destroy)(void *ctx);
202cbef7084SJames Wright } *SgsDDData;
2039a17443dSJames Wright 
2044e9802d1SJames Wright typedef struct {
205ee3b213aSJames Wright   DM                   dm_dd_training;
206ee3b213aSJames Wright   PetscInt             num_comp_dd_inputs, write_data_interval;
207ee3b213aSJames Wright   OperatorApplyContext op_training_data_calc_ctx;
208ee3b213aSJames Wright   NodalProjectionData  filtered_grad_velo_proj;
209ee3b213aSJames Wright   size_t               training_data_array_dims[2];
210ee3b213aSJames Wright   PetscBool            overwrite_training_data;
211ee3b213aSJames Wright } *SGS_DD_TrainingData;
212ee3b213aSJames Wright 
213ee3b213aSJames Wright typedef struct {
2144e9802d1SJames Wright   DM                   dm_filter;
21581530087SJames Wright   PetscInt             num_filtered_fields;
21681530087SJames Wright   CeedInt             *num_field_components;
217051427eeSJames Wright   PetscInt             field_prim_state, field_velo_prod;
2184e9802d1SJames Wright   OperatorApplyContext op_rhs_ctx;
2194e9802d1SJames Wright   KSP                  ksp;
2202029a677SJames Wright   PetscBool            do_mms_test;
2214e9802d1SJames Wright } *DiffFilterData;
2224e9802d1SJames Wright 
2238146534cSJames Wright typedef struct {
2248146534cSJames Wright   void    *client;
2258146534cSJames Wright   char     rank_id_name[16];
2268146534cSJames Wright   PetscInt collocated_database_num_ranks;
2278146534cSJames Wright } *SmartSimData;
2288146534cSJames Wright 
22977841947SLeila Ghaffari // PETSc user data
23077841947SLeila Ghaffari struct User_private {
23177841947SLeila Ghaffari   MPI_Comm             comm;
23277841947SLeila Ghaffari   DM                   dm;
23377841947SLeila Ghaffari   DM                   dm_viz;
23477841947SLeila Ghaffari   Mat                  interp_viz;
23577841947SLeila Ghaffari   Ceed                 ceed;
23677841947SLeila Ghaffari   Units                units;
23704292f7dSJames Wright   Vec                  Q_loc, Q_dot_loc;
23877841947SLeila Ghaffari   Physics              phys;
23977841947SLeila Ghaffari   AppCtx               app_ctx;
24091c97f41SJames Wright   CeedVector           q_ceed, q_dot_ceed, g_ceed, x_ceed;
24191c97f41SJames Wright   CeedOperator         op_rhs_vol, op_ifunction_vol, op_ifunction;
24291c97f41SJames Wright   Mat                  mat_ijacobian;
24304292f7dSJames Wright   KSP                  mass_ksp;
2449ad5e8e4SJames Wright   OperatorApplyContext op_rhs_ctx, op_strong_bc_ctx;
24515637395SJames Wright   CeedScalar           time_bc_set;
246cbef7084SJames Wright   SpanStatsData        spanstats;
247999ff5c7SJames Wright   NodalProjectionData  grad_velo_proj;
248cbef7084SJames Wright   SgsDDData            sgs_dd_data;
2494e9802d1SJames Wright   DiffFilterData       diff_filter;
2508146534cSJames Wright   SmartSimData         smartsim;
251ee3b213aSJames Wright   SGS_DD_TrainingData  sgs_dd_train;
25277841947SLeila Ghaffari };
25377841947SLeila Ghaffari 
25477841947SLeila Ghaffari // Units
25577841947SLeila Ghaffari struct Units_private {
25677841947SLeila Ghaffari   // fundamental units
25777841947SLeila Ghaffari   PetscScalar meter;
25877841947SLeila Ghaffari   PetscScalar kilogram;
25977841947SLeila Ghaffari   PetscScalar second;
26077841947SLeila Ghaffari   PetscScalar Kelvin;
26177841947SLeila Ghaffari   // derived units
26277841947SLeila Ghaffari   PetscScalar Pascal;
26377841947SLeila Ghaffari   PetscScalar J_per_kg_K;
26477841947SLeila Ghaffari   PetscScalar m_per_squared_s;
26577841947SLeila Ghaffari   PetscScalar W_per_m_K;
26677841947SLeila Ghaffari   PetscScalar Joule;
26777841947SLeila Ghaffari };
26877841947SLeila Ghaffari 
26977841947SLeila Ghaffari // Boundary conditions
27077841947SLeila Ghaffari struct SimpleBC_private {
2712fe7aee7SLeila Ghaffari   PetscInt num_wall,  // Number of faces with wall BCs
2722fe7aee7SLeila Ghaffari       wall_comps[5],  // An array of constrained component numbers
2732fe7aee7SLeila Ghaffari       num_comps,
2747c5bba50SJames Wright       num_symmetry[3],  // Number of faces with symmetry BCs
2759f844368SJames Wright       num_inflow, num_outflow, num_freestream, num_slip;
2769f844368SJames Wright   PetscInt walls[16], symmetries[3][16], inflows[16], outflows[16], freestreams[16], slips[16];
27777841947SLeila Ghaffari };
27877841947SLeila Ghaffari 
27977841947SLeila Ghaffari // Struct that contains all enums and structs used for the physics of all problems
28077841947SLeila Ghaffari struct Physics_private {
28177841947SLeila Ghaffari   PetscBool             implicit;
28297baf651SJames Wright   StateVariable         state_var;
28311436a05SJames Wright   CeedContextFieldLabel solution_time_label;
284cd4035ffSJames Wright   CeedContextFieldLabel stg_solution_time_label;
28588626eedSJames Wright   CeedContextFieldLabel timestep_size_label;
286841e4c73SJed Brown   CeedContextFieldLabel ics_time_label;
287e334ad8fSJed Brown   CeedContextFieldLabel ijacobian_time_shift_label;
28877841947SLeila Ghaffari };
28977841947SLeila Ghaffari 
29091e5af17SJed Brown typedef struct {
29191e5af17SJed Brown   CeedQFunctionUser    qfunction;
29291e5af17SJed Brown   const char          *qfunction_loc;
293841e4c73SJed Brown   CeedQFunctionContext qfunction_context;
29491e5af17SJed Brown } ProblemQFunctionSpec;
29591e5af17SJed Brown 
29677841947SLeila Ghaffari // Problem specific data
297841e4c73SJed Brown typedef struct ProblemData_private ProblemData;
298841e4c73SJed Brown struct ProblemData_private {
299e334ad8fSJed Brown   CeedInt              dim, q_data_size_vol, q_data_size_sur, jac_data_size_sur;
3001864f1c2SLeila Ghaffari   CeedScalar           dm_scale;
3012b730f8bSJeremy L Thompson   ProblemQFunctionSpec setup_vol, setup_sur, ics, apply_vol_rhs, apply_vol_ifunction, apply_vol_ijacobian, apply_inflow, apply_outflow,
3029f844368SJames Wright       apply_freestream, apply_slip, apply_inflow_jacobian, apply_outflow_jacobian, apply_freestream_jacobian, apply_slip_jacobian;
30377841947SLeila Ghaffari   bool      non_zero_time;
304752a08a7SJames Wright   PetscBool bc_from_ics, use_strong_bc_ceed, uses_newtonian;
305367c849eSJames Wright   PetscErrorCode (*print_info)(User, ProblemData *, AppCtx);
306841e4c73SJed Brown };
30777841947SLeila Ghaffari 
308841e4c73SJed Brown extern int FreeContextPetsc(void *);
309841e4c73SJed Brown 
31077841947SLeila Ghaffari // -----------------------------------------------------------------------------
31177841947SLeila Ghaffari // Set up problems
31277841947SLeila Ghaffari // -----------------------------------------------------------------------------
31377841947SLeila Ghaffari // Set up function for each problem
31414712a6bSJames Wright extern PetscErrorCode NS_TAYLOR_GREEN(ProblemData *problem, DM dm, void *ctx, SimpleBC bc);
315530ad8c4SKenneth E. Jansen extern PetscErrorCode NS_GAUSSIAN_WAVE(ProblemData *problem, DM dm, void *ctx, SimpleBC bc);
31646de7363SJames Wright extern PetscErrorCode NS_CHANNEL(ProblemData *problem, DM dm, void *ctx, SimpleBC bc);
31746de7363SJames Wright extern PetscErrorCode NS_BLASIUS(ProblemData *problem, DM dm, void *ctx, SimpleBC bc);
31846de7363SJames Wright extern PetscErrorCode NS_NEWTONIAN_IG(ProblemData *problem, DM dm, void *ctx, SimpleBC bc);
31946de7363SJames Wright extern PetscErrorCode NS_DENSITY_CURRENT(ProblemData *problem, DM dm, void *ctx, SimpleBC bc);
32046de7363SJames Wright extern PetscErrorCode NS_EULER_VORTEX(ProblemData *problem, DM dm, void *ctx, SimpleBC bc);
32146de7363SJames Wright extern PetscErrorCode NS_SHOCKTUBE(ProblemData *problem, DM dm, void *ctx, SimpleBC bc);
32246de7363SJames Wright extern PetscErrorCode NS_ADVECTION(ProblemData *problem, DM dm, void *ctx, SimpleBC bc);
32346de7363SJames Wright extern PetscErrorCode NS_ADVECTION2D(ProblemData *problem, DM dm, void *ctx, SimpleBC bc);
32477841947SLeila Ghaffari 
32577841947SLeila Ghaffari // Print function for each problem
326367c849eSJames Wright extern PetscErrorCode PRINT_NEWTONIAN(User user, ProblemData *problem, AppCtx app_ctx);
32777841947SLeila Ghaffari 
328367c849eSJames Wright extern PetscErrorCode PRINT_EULER_VORTEX(User user, ProblemData *problem, AppCtx app_ctx);
32977841947SLeila Ghaffari 
330367c849eSJames Wright extern PetscErrorCode PRINT_SHOCKTUBE(User user, ProblemData *problem, AppCtx app_ctx);
331019b7682STimothy Aiken 
332367c849eSJames Wright extern PetscErrorCode PRINT_ADVECTION(User user, ProblemData *problem, AppCtx app_ctx);
33377841947SLeila Ghaffari 
334367c849eSJames Wright extern PetscErrorCode PRINT_ADVECTION2D(User user, ProblemData *problem, AppCtx app_ctx);
33577841947SLeila Ghaffari 
3362e31f396SJames Wright PetscErrorCode PrintRunInfo(User user, Physics phys_ctx, ProblemData *problem, MPI_Comm comm);
3372e31f396SJames Wright 
33877841947SLeila Ghaffari // -----------------------------------------------------------------------------
33977841947SLeila Ghaffari // libCEED functions
34077841947SLeila Ghaffari // -----------------------------------------------------------------------------
34177841947SLeila Ghaffari // Utility function to create local CEED restriction
342431cd09aSJames Wright PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height, DMLabel domain_label, CeedInt label_value, PetscInt dm_field,
343431cd09aSJames Wright                                          CeedElemRestriction *elem_restr);
34477841947SLeila Ghaffari 
345bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field,
346bb85d312SJames Wright                                                CeedElemRestriction *restriction);
347bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCoordinateCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height,
348bb85d312SJames Wright                                                          CeedElemRestriction *restriction);
349bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionQDataCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height,
350bb85d312SJames Wright                                                     PetscInt q_data_size, CeedElemRestriction *restriction);
351bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCollocatedCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height,
352bb85d312SJames Wright                                                          PetscInt q_data_size, CeedElemRestriction *restriction);
35377841947SLeila Ghaffari 
3540814d5a7SKenneth E. Jansen PetscErrorCode CreateBasisFromPlex(Ceed ceed, DM dm, DMLabel domain_label, CeedInt label_value, CeedInt height, CeedInt dm_field, CeedBasis *basis);
3550814d5a7SKenneth E. Jansen 
35677841947SLeila Ghaffari // Utility function to create CEED Composite Operator for the entire domain
3572b730f8bSJeremy L Thompson PetscErrorCode CreateOperatorForDomain(Ceed ceed, DM dm, SimpleBC bc, CeedData ceed_data, Physics phys, CeedOperator op_apply_vol,
3582b730f8bSJeremy L Thompson                                        CeedOperator op_apply_ijacobian_vol, CeedInt height, CeedInt P_sur, CeedInt Q_sur, CeedInt q_data_size_sur,
3592b730f8bSJeremy L Thompson                                        CeedInt jac_data_size_sur, CeedOperator *op_apply, CeedOperator *op_apply_ijacobian);
36077841947SLeila Ghaffari 
3612b730f8bSJeremy L Thompson PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user, AppCtx app_ctx, ProblemData *problem, SimpleBC bc);
36277841947SLeila Ghaffari 
36377841947SLeila Ghaffari // -----------------------------------------------------------------------------
36477841947SLeila Ghaffari // Time-stepping functions
36577841947SLeila Ghaffari // -----------------------------------------------------------------------------
36604292f7dSJames Wright // Create KSP to solve the inverse mass operator for explicit time stepping schemes
367dfcf44b0SJames Wright PetscErrorCode CreateKSPMassOperator(User user, CeedData ceed_data);
36877841947SLeila Ghaffari 
36977841947SLeila Ghaffari // RHS (Explicit time-stepper) function setup
37077841947SLeila Ghaffari PetscErrorCode RHS_NS(TS ts, PetscReal t, Vec Q, Vec G, void *user_data);
37177841947SLeila Ghaffari 
37277841947SLeila Ghaffari // Implicit time-stepper function setup
3732b730f8bSJeremy L Thompson PetscErrorCode IFunction_NS(TS ts, PetscReal t, Vec Q, Vec Q_dot, Vec G, void *user_data);
37477841947SLeila Ghaffari 
37577841947SLeila Ghaffari // User provided TS Monitor
3762b730f8bSJeremy L Thompson PetscErrorCode TSMonitor_NS(TS ts, PetscInt step_no, PetscReal time, Vec Q, void *ctx);
37777841947SLeila Ghaffari 
37877841947SLeila Ghaffari // TS: Create, setup, and solve
3792b730f8bSJeremy L Thompson PetscErrorCode TSSolve_NS(DM dm, User user, AppCtx app_ctx, Physics phys, Vec *Q, PetscScalar *f_time, TS *ts);
38077841947SLeila Ghaffari 
381a0b9a424SJames Wright // Update Boundary Values when time has changed
382a0b9a424SJames Wright PetscErrorCode UpdateBoundaryValues(User user, Vec Q_loc, PetscReal t);
383a0b9a424SJames Wright 
38477841947SLeila Ghaffari // -----------------------------------------------------------------------------
38577841947SLeila Ghaffari // Setup DM
38677841947SLeila Ghaffari // -----------------------------------------------------------------------------
3871864f1c2SLeila Ghaffari // Create mesh
3882b730f8bSJeremy L Thompson PetscErrorCode CreateDM(MPI_Comm comm, ProblemData *problem, MatType, VecType, DM *dm);
38977841947SLeila Ghaffari 
39077841947SLeila Ghaffari // Set up DM
3910814d5a7SKenneth E. Jansen PetscErrorCode SetUpDM(DM dm, ProblemData *problem, PetscInt degree, PetscInt q_extra, SimpleBC bc, Physics phys);
392d68a66c4SJames Wright PetscErrorCode DMSetupByOrderBegin_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra,
39385df0564SJames Wright                                        PetscInt num_fields, const PetscInt *field_sizes, DM dm);
394d68a66c4SJames Wright PetscErrorCode DMSetupByOrderEnd_FEM(PetscBool setup_coords, DM dm);
395d68a66c4SJames Wright PetscErrorCode DMSetupByOrder_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra,
39685df0564SJames Wright                                   PetscInt num_fields, const PetscInt *field_sizes, DM dm);
39777841947SLeila Ghaffari 
39877841947SLeila Ghaffari // Refine DM for high-order viz
3992b730f8bSJeremy L Thompson PetscErrorCode VizRefineDM(DM dm, User user, ProblemData *problem, SimpleBC bc, Physics phys);
40077841947SLeila Ghaffari 
40177841947SLeila Ghaffari // -----------------------------------------------------------------------------
40277841947SLeila Ghaffari // Process command line options
40377841947SLeila Ghaffari // -----------------------------------------------------------------------------
40477841947SLeila Ghaffari // Register problems to be available on the command line
40577841947SLeila Ghaffari PetscErrorCode RegisterProblems_NS(AppCtx app_ctx);
40677841947SLeila Ghaffari 
40777841947SLeila Ghaffari // Process general command line options
4082b730f8bSJeremy L Thompson PetscErrorCode ProcessCommandLineOptions(MPI_Comm comm, AppCtx app_ctx, SimpleBC bc);
40977841947SLeila Ghaffari 
41077841947SLeila Ghaffari // -----------------------------------------------------------------------------
41177841947SLeila Ghaffari // Miscellaneous utility functions
41277841947SLeila Ghaffari // -----------------------------------------------------------------------------
413*3a10b0eeSJames Wright PetscErrorCode GetInverseMultiplicity(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field,
414*3a10b0eeSJames Wright                                       PetscBool get_global_multiplicity, CeedElemRestriction *elem_restr_inv_multiplicity,
415*3a10b0eeSJames Wright                                       CeedVector *inv_multiplicity);
4162b730f8bSJeremy L Thompson PetscErrorCode ICs_FixMultiplicity(DM dm, CeedData ceed_data, User user, Vec Q_loc, Vec Q, CeedScalar time);
41777841947SLeila Ghaffari 
4183c9e7ad1SJames Wright PetscErrorCode DMPlexInsertBoundaryValues_FromICs(DM dm, PetscBool insert_essential, Vec Q_loc, PetscReal time, Vec face_geom_FVM, Vec cell_geom_FVM,
4192b730f8bSJeremy L Thompson                                                   Vec grad_FVM);
42077841947SLeila Ghaffari 
42177841947SLeila Ghaffari // Compare reference solution values with current test run for CI
4223c9e7ad1SJames Wright PetscErrorCode RegressionTest(AppCtx app_ctx, Vec Q);
42377841947SLeila Ghaffari 
42477841947SLeila Ghaffari // Get error for problems with exact solutions
4253c9e7ad1SJames Wright PetscErrorCode PrintError(CeedData ceed_data, DM dm, User user, Vec Q, PetscScalar final_time);
42677841947SLeila Ghaffari 
42777841947SLeila Ghaffari // Post-processing
4283c9e7ad1SJames Wright PetscErrorCode PostProcess(TS ts, CeedData ceed_data, DM dm, ProblemData *problem, User user, Vec Q, PetscScalar final_time);
42977841947SLeila Ghaffari 
43077841947SLeila Ghaffari // -- Gather initial Q values in case of continuation of simulation
43177841947SLeila Ghaffari PetscErrorCode SetupICsFromBinary(MPI_Comm comm, AppCtx app_ctx, Vec Q);
43277841947SLeila Ghaffari 
43377841947SLeila Ghaffari // Record boundary values from initial condition
4343c9e7ad1SJames Wright PetscErrorCode SetBCsFromICs(DM dm, Vec Q, Vec Q_loc);
43577841947SLeila Ghaffari 
4364de8550aSJed Brown // Versioning token for binary checkpoints
4370de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN;  // for backwards compatibility
4380de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_32;
4390de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_64;
4404de8550aSJed Brown 
441ef080ff9SJames Wright // Create appropriate mass qfunction based on number of components N
442ef080ff9SJames Wright PetscErrorCode CreateMassQFunction(Ceed ceed, CeedInt N, CeedInt q_data_size, CeedQFunction *qf);
443ef080ff9SJames Wright 
444999ff5c7SJames Wright PetscErrorCode NodalProjectionDataDestroy(NodalProjectionData context);
445999ff5c7SJames Wright 
446cbef7084SJames Wright PetscErrorCode PhastaDatFileOpen(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2],
4478b892a05SJames Wright                                  FILE **fp);
4488b892a05SJames Wright 
449cbef7084SJames Wright PetscErrorCode PhastaDatFileGetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows);
4508b892a05SJames Wright 
451cbef7084SJames Wright PetscErrorCode PhastaDatFileReadToArrayReal(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscReal array[]);
4524cc9442bSJames Wright 
4538b892a05SJames Wright // -----------------------------------------------------------------------------
4548b892a05SJames Wright // Turbulence Statistics Collection Functions
4558b892a05SJames Wright // -----------------------------------------------------------------------------
4568b892a05SJames Wright 
457f5452247SJames Wright PetscErrorCode TurbulenceStatisticsSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem);
458f5452247SJames Wright PetscErrorCode TSMonitor_TurbulenceStatistics(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx);
459f5452247SJames Wright PetscErrorCode TurbulenceStatisticsDestroy(User user, CeedData ceed_data);
460fd170fd0SJames Wright 
46177841947SLeila Ghaffari // -----------------------------------------------------------------------------
4624cc9442bSJames Wright // Data-Driven Subgrid Stress (DD-SGS) Modeling Functions
4634cc9442bSJames Wright // -----------------------------------------------------------------------------
4644cc9442bSJames Wright 
4658f5ab23bSJames Wright PetscErrorCode SgsDDSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem);
466cbef7084SJames Wright PetscErrorCode SgsDDDataDestroy(SgsDDData sgs_dd_data);
4678f5ab23bSJames Wright PetscErrorCode SgsDDApplyIFunction(User user, const Vec Q_loc, Vec G_loc);
4687618d7b7SJames Wright PetscErrorCode VelocityGradientProjectionSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem, StateVariable state_var_input,
4697618d7b7SJames Wright                                                CeedElemRestriction elem_restr_input, CeedBasis basis_input, NodalProjectionData *pgrad_velo_proj);
4707618d7b7SJames Wright PetscErrorCode VelocityGradientProjectionApply(NodalProjectionData grad_velo_proj, Vec Q_loc, Vec VelocityGradient);
471052409adSJames Wright PetscErrorCode GridAnisotropyTensorProjectionSetupApply(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso,
472052409adSJames Wright                                                         CeedVector *grid_aniso_vector);
473900aec75SJames Wright PetscErrorCode GridAnisotropyTensorCalculateCollocatedVector(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso,
474900aec75SJames Wright                                                              CeedVector *aniso_colloc_ceed, PetscInt *num_comp_aniso);
4754cc9442bSJames Wright 
4764cc9442bSJames Wright // -----------------------------------------------------------------------------
477dada6cc0SJames Wright // Boundary Condition Related Functions
478dada6cc0SJames Wright // -----------------------------------------------------------------------------
479dada6cc0SJames Wright 
480dada6cc0SJames Wright // Setup StrongBCs that use QFunctions
48166170c20SJames Wright PetscErrorCode SetupStrongBC_Ceed(Ceed ceed, CeedData ceed_data, DM dm, User user, ProblemData *problem, SimpleBC bc);
482b7c563b6SJeremy L Thompson 
483d310b3d3SAdeleke O. Bankole PetscErrorCode FreestreamBCSetup(ProblemData *problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference);
4848a94a473SJed Brown PetscErrorCode OutflowBCSetup(ProblemData *problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference);
4859f844368SJames Wright PetscErrorCode SlipBCSetup(ProblemData *problem, DM dm, void *ctx, CeedQFunctionContext newtonian_ig_qfctx);
4862b730f8bSJeremy L Thompson 
4874e9802d1SJames Wright // -----------------------------------------------------------------------------
4884e9802d1SJames Wright // Differential Filtering Functions
4894e9802d1SJames Wright // -----------------------------------------------------------------------------
4904e9802d1SJames Wright 
4914e9802d1SJames Wright PetscErrorCode DifferentialFilterSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem);
4924e9802d1SJames Wright PetscErrorCode DifferentialFilterDataDestroy(DiffFilterData diff_filter);
4934e9802d1SJames Wright PetscErrorCode TSMonitor_DifferentialFilter(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx);
4944e9802d1SJames Wright PetscErrorCode DifferentialFilterApply(User user, const PetscReal solution_time, const Vec Q, Vec Filtered_Solution);
495cbef7084SJames Wright PetscErrorCode DifferentialFilterMmsICSetup(ProblemData *problem);
4964e9802d1SJames Wright 
4978146534cSJames Wright // -----------------------------------------------------------------------------
4988146534cSJames Wright // SGS Data-Driven Training via SmartSim
4998146534cSJames Wright // -----------------------------------------------------------------------------
5008146534cSJames Wright PetscErrorCode SmartSimSetup(User user);
501b306c3f1SJames Wright PetscErrorCode SmartSimDataDestroy(SmartSimData smartsim);
502ee3b213aSJames Wright PetscErrorCode SGS_DD_TrainingSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem);
503ee3b213aSJames Wright PetscErrorCode TSMonitor_SGS_DD_Training(TS ts, PetscInt step_num, PetscReal solution_time, Vec Q, void *ctx);
5041a7db67cSJames Wright PetscErrorCode TSPostStep_SGS_DD_Training(TS ts);
505ee3b213aSJames Wright PetscErrorCode SGS_DD_TrainingDataDestroy(SGS_DD_TrainingData sgs_dd_train);
5068146534cSJames Wright 
507b7c563b6SJeremy L Thompson #endif  // libceed_fluids_examples_navier_stokes_h
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