13d8e8822SJeremy L Thompson // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors. 23d8e8822SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 377841947SLeila Ghaffari // 43d8e8822SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause 577841947SLeila Ghaffari // 63d8e8822SJeremy L Thompson // This file is part of CEED: http://github.com/ceed 777841947SLeila Ghaffari 8b7c563b6SJeremy L Thompson #ifndef libceed_fluids_examples_navier_stokes_h 9b7c563b6SJeremy L Thompson #define libceed_fluids_examples_navier_stokes_h 1077841947SLeila Ghaffari 11d0593705SJames Wright #include <ceed-utils.h> 1277841947SLeila Ghaffari #include <ceed.h> 1391c97f41SJames Wright #include <mat-ceed.h> 1477841947SLeila Ghaffari #include <petscts.h> 1577841947SLeila Ghaffari #include <stdbool.h> 162b730f8bSJeremy L Thompson 174021610dSJames Wright #include "./include/petsc_ops.h" 1897baf651SJames Wright #include "qfunctions/newtonian_types.h" 192b730f8bSJeremy L Thompson #include "qfunctions/stabilization_types.h" 2077841947SLeila Ghaffari 21d31f425aSJeremy L Thompson #if PETSC_VERSION_LT(3, 20, 0) 22d31f425aSJeremy L Thompson #error "PETSc v3.20 or later is required" 2377841947SLeila Ghaffari #endif 2477841947SLeila Ghaffari 2549a40c8aSKenneth E. Jansen #if PETSC_VERSION_LT(3, 21, 0) 2649a40c8aSKenneth E. Jansen #define DMSetCoordinateDisc(a, b, c) DMProjectCoordinates(a, b) 27342228c7SAlex Lindsay #define DMPlexFilter(a, b, c, d, e, f, g) DMPlexFilter(a, b, c, g) 2849a40c8aSKenneth E. Jansen #endif 2949a40c8aSKenneth E. Jansen 3077841947SLeila Ghaffari // ----------------------------------------------------------------------------- 3177841947SLeila Ghaffari // Enums 3277841947SLeila Ghaffari // ----------------------------------------------------------------------------- 3377841947SLeila Ghaffari 3477841947SLeila Ghaffari // Euler - test cases 3577841947SLeila Ghaffari typedef enum { 36bc7bbd5dSLeila Ghaffari EULER_TEST_ISENTROPIC_VORTEX = 0, 3777841947SLeila Ghaffari EULER_TEST_1 = 1, 3877841947SLeila Ghaffari EULER_TEST_2 = 2, 3977841947SLeila Ghaffari EULER_TEST_3 = 3, 4077841947SLeila Ghaffari EULER_TEST_4 = 4, 4132f166c6SLeila Ghaffari EULER_TEST_5 = 5, 4277841947SLeila Ghaffari } EulerTestType; 432b730f8bSJeremy L Thompson static const char *const EulerTestTypes[] = {"isentropic_vortex", "test_1", "test_2", "test_3", "test_4", "test_5", 442b730f8bSJeremy L Thompson "EulerTestType", "EULER_TEST_", NULL}; 4577841947SLeila Ghaffari 46700ae941SJames Wright // Advection - Wind types 47700ae941SJames Wright static const char *const WindTypes[] = {"rotation", "translation", "WindType", "WIND_", NULL}; 48700ae941SJames Wright 497b77ddfdSJames Wright // Advection - Initial Condition Types 507b77ddfdSJames Wright static const char *const AdvectionICTypes[] = {"sphere", "cylinder", "cosine_hill", "skew", "AdvectionICType", "ADVECTIONIC_", NULL}; 51700ae941SJames Wright 52700ae941SJames Wright // Advection - Bubble Continuity Types 5393639ffbSJames Wright static const char *const BubbleContinuityTypes[] = {"smooth", "back_sharp", "thick", "cosine", "BubbleContinuityType", "BUBBLE_CONTINUITY_", NULL}; 54700ae941SJames Wright 5577841947SLeila Ghaffari // Stabilization methods 562b730f8bSJeremy L Thompson static const char *const StabilizationTypes[] = {"none", "SU", "SUPG", "StabilizationType", "STAB_", NULL}; 5777841947SLeila Ghaffari 58b18328c4SJames Wright // Stabilization tau constants 59b18328c4SJames Wright static const char *const StabilizationTauTypes[] = {"Ctau", "AdvDiff_Shakib", "AdvDiff_Shakib_P", "StabilizationTauType", "STAB_TAU_", NULL}; 60b18328c4SJames Wright 6151b00d91SJames Wright // Test mode type 628fb33541SJames Wright typedef enum { 638fb33541SJames Wright TESTTYPE_NONE = 0, 648fb33541SJames Wright TESTTYPE_SOLVER = 1, 658fb33541SJames Wright TESTTYPE_TURB_SPANSTATS = 2, 66970fa48bSJames Wright TESTTYPE_DIFF_FILTER = 3, 678fb33541SJames Wright } TestType; 68970fa48bSJames Wright static const char *const TestTypes[] = {"none", "solver", "turb_spanstats", "diff_filter", "TestType", "TESTTYPE_", NULL}; 698fb33541SJames Wright 702526956eSJames Wright // Subgrid-Stress mode type 7119ffbc25SJames Wright typedef enum { 7219ffbc25SJames Wright SGS_MODEL_NONE = 0, 7319ffbc25SJames Wright SGS_MODEL_DATA_DRIVEN = 1, 7419ffbc25SJames Wright } SGSModelType; 7519ffbc25SJames Wright static const char *const SGSModelTypes[] = {"none", "data_driven", "SGSModelType", "SGS_MODEL_", NULL}; 7619ffbc25SJames Wright 772526956eSJames Wright // Mesh transformation type 782526956eSJames Wright typedef enum { 792526956eSJames Wright MESH_TRANSFORM_NONE = 0, 802526956eSJames Wright MESH_TRANSFORM_PLATEMESH = 1, 812526956eSJames Wright } MeshTransformType; 822526956eSJames Wright static const char *const MeshTransformTypes[] = {"none", "platemesh", "MeshTransformType", "MESH_TRANSFORM_", NULL}; 832526956eSJames Wright 84bd882c8aSJames Wright static const char *const DifferentialFilterDampingFunctions[] = { 85bd882c8aSJames Wright "none", "van_driest", "mms", "DifferentialFilterDampingFunction", "DIFF_FILTER_DAMP_", NULL}; 86bd882c8aSJames Wright 8777841947SLeila Ghaffari // ----------------------------------------------------------------------------- 8875d1798cSJames Wright // Log Events 8975d1798cSJames Wright // ----------------------------------------------------------------------------- 9075d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorApply; 9175d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssemble; 9275d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssembleDiagonal; 9375d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssemblePointBlockDiagonal; 94844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Init; 95844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Meta; 96844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Train; 97844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_TrainDataCompute; 983737f832SJames Wright extern PetscLogEvent FLUIDS_DifferentialFilter; 993737f832SJames Wright extern PetscLogEvent FLUIDS_VelocityGradientProjection; 10075d1798cSJames Wright PetscErrorCode RegisterLogEvents(); 10175d1798cSJames Wright 10275d1798cSJames Wright // ----------------------------------------------------------------------------- 10377841947SLeila Ghaffari // Structs 10477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 10577841947SLeila Ghaffari // Structs declarations 10677841947SLeila Ghaffari typedef struct AppCtx_private *AppCtx; 10777841947SLeila Ghaffari typedef struct CeedData_private *CeedData; 10877841947SLeila Ghaffari typedef struct User_private *User; 10977841947SLeila Ghaffari typedef struct Units_private *Units; 11077841947SLeila Ghaffari typedef struct SimpleBC_private *SimpleBC; 11177841947SLeila Ghaffari typedef struct Physics_private *Physics; 11277841947SLeila Ghaffari 11377841947SLeila Ghaffari // Application context from user command line options 11477841947SLeila Ghaffari struct AppCtx_private { 11577841947SLeila Ghaffari // libCEED arguments 11677841947SLeila Ghaffari char ceed_resource[PETSC_MAX_PATH_LEN]; // libCEED backend 11777841947SLeila Ghaffari PetscInt degree; 11877841947SLeila Ghaffari PetscInt q_extra; 119544be873SJed Brown // Solver arguments 120544be873SJed Brown MatType amat_type; 12177841947SLeila Ghaffari // Post-processing arguments 12237cbb16aSJed Brown PetscInt checkpoint_interval; 12377841947SLeila Ghaffari PetscInt viz_refine; 12477841947SLeila Ghaffari PetscInt cont_steps; 1254de8550aSJed Brown PetscReal cont_time; 12669293791SJames Wright char cont_file[PETSC_MAX_PATH_LEN]; 12769293791SJames Wright char cont_time_file[PETSC_MAX_PATH_LEN]; 12877841947SLeila Ghaffari char output_dir[PETSC_MAX_PATH_LEN]; 12969293791SJames Wright PetscBool add_stepnum2bin; 13037cbb16aSJed Brown PetscBool checkpoint_vtk; 13177841947SLeila Ghaffari // Problem type arguments 13277841947SLeila Ghaffari PetscFunctionList problems; 13377841947SLeila Ghaffari char problem_name[PETSC_MAX_PATH_LEN]; 13477841947SLeila Ghaffari // Test mode arguments 1358fb33541SJames Wright TestType test_type; 13677841947SLeila Ghaffari PetscScalar test_tol; 137b7d66439SJames Wright char test_file_path[PETSC_MAX_PATH_LEN]; 138b7d66439SJames Wright // Turbulent spanwise statistics 139b7d66439SJames Wright PetscBool turb_spanstats_enable; 140b7d66439SJames Wright PetscInt turb_spanstats_collect_interval; 141b7d66439SJames Wright PetscInt turb_spanstats_viewer_interval; 142b7d66439SJames Wright PetscViewer turb_spanstats_viewer; 143b7d66439SJames Wright PetscViewerFormat turb_spanstats_viewer_format; 144ca69d878SAdeleke O. Bankole // Wall forces 145ca69d878SAdeleke O. Bankole struct { 146ca69d878SAdeleke O. Bankole PetscInt num_wall; 147ca69d878SAdeleke O. Bankole PetscInt *walls; 148ca69d878SAdeleke O. Bankole PetscViewer viewer; 149ca69d878SAdeleke O. Bankole PetscViewerFormat viewer_format; 150ca69d878SAdeleke O. Bankole PetscBool header_written; 151ca69d878SAdeleke O. Bankole } wall_forces; 15219ffbc25SJames Wright // Subgrid Stress Model 15319ffbc25SJames Wright SGSModelType sgs_model_type; 15428134cfaSJames Wright PetscBool sgs_train_enable; 1554e9802d1SJames Wright // Differential Filtering 1564e9802d1SJames Wright PetscBool diff_filter_monitor; 1572526956eSJames Wright MeshTransformType mesh_transform_type; 15877841947SLeila Ghaffari }; 15977841947SLeila Ghaffari 16077841947SLeila Ghaffari // libCEED data struct 16177841947SLeila Ghaffari struct CeedData_private { 16277841947SLeila Ghaffari CeedVector x_coord, q_data; 1632b730f8bSJeremy L Thompson CeedBasis basis_x, basis_xc, basis_q, basis_x_sur, basis_q_sur, basis_xc_sur; 16477841947SLeila Ghaffari CeedElemRestriction elem_restr_x, elem_restr_q, elem_restr_qd_i; 1655263e9c6SJames Wright CeedOperator op_setup_vol; 1665263e9c6SJames Wright OperatorApplyContext op_ics_ctx; 167d310b3d3SAdeleke O. Bankole CeedQFunction qf_setup_vol, qf_ics, qf_rhs_vol, qf_ifunction_vol, qf_setup_sur, qf_apply_inflow, qf_apply_inflow_jacobian, qf_apply_outflow, 1689f844368SJames Wright qf_apply_outflow_jacobian, qf_apply_freestream, qf_apply_freestream_jacobian, qf_apply_slip, qf_apply_slip_jacobian; 16977841947SLeila Ghaffari }; 17077841947SLeila Ghaffari 17151ee423eSJames Wright typedef struct { 17251ee423eSJames Wright DM dm; 1731737222fSJames Wright PetscSF sf; // For communicating child data to parents 174ed331efdSJames Wright OperatorApplyContext op_stats_collect_ctx, op_proj_rhs_ctx; 17551ee423eSJames Wright PetscInt num_comp_stats; 176ed331efdSJames Wright Vec Child_Stats_loc, Parent_Stats_loc; 177a175e481SJames Wright KSP ksp; // For the L^2 projection solve 178a175e481SJames Wright CeedScalar span_width; // spanwise width of the child domain 179b7d66439SJames Wright PetscBool do_mms_test; 1804021610dSJames Wright OperatorApplyContext mms_error_ctx; 181495b9769SJames Wright CeedContextFieldLabel solution_time_label, previous_time_label; 182cbef7084SJames Wright } SpanStatsData; 18351ee423eSJames Wright 184999ff5c7SJames Wright typedef struct { 185999ff5c7SJames Wright DM dm; 186999ff5c7SJames Wright PetscInt num_comp; 187999ff5c7SJames Wright OperatorApplyContext l2_rhs_ctx; 188999ff5c7SJames Wright KSP ksp; 189999ff5c7SJames Wright } *NodalProjectionData; 190999ff5c7SJames Wright 1916b3fb9aeSJames Wright typedef PetscErrorCode (*SgsDDNodalStressEval)(User user, Vec Q_loc, Vec VelocityGradient, Vec SGSNodal_loc); 1921250e899SJames Wright typedef PetscErrorCode (*SgsDDNodalStressInference)(Vec DD_Inputs_loc, Vec DD_Outputs_loc, void *ctx); 1939a17443dSJames Wright typedef struct { 1941250e899SJames Wright DM dm_sgs, dm_dd_inputs, dm_dd_outputs; 1955f5d6789SAlex Lindsay PetscInt num_comp_sgs, num_comp_inputs, num_comp_outputs; 1961250e899SJames Wright OperatorApplyContext op_nodal_evaluation_ctx, op_nodal_dd_inputs_ctx, op_nodal_dd_outputs_ctx, op_sgs_apply_ctx; 1971250e899SJames Wright CeedVector sgs_nodal_ceed, grad_velo_ceed; 1986b3fb9aeSJames Wright SgsDDNodalStressEval sgs_nodal_eval; 1991250e899SJames Wright SgsDDNodalStressInference sgs_nodal_inference; 2001250e899SJames Wright void *sgs_nodal_inference_ctx; 2011250e899SJames Wright PetscErrorCode (*sgs_nodal_inference_ctx_destroy)(void *ctx); 202cbef7084SJames Wright } *SgsDDData; 2039a17443dSJames Wright 2044e9802d1SJames Wright typedef struct { 205ee3b213aSJames Wright DM dm_dd_training; 206ee3b213aSJames Wright PetscInt num_comp_dd_inputs, write_data_interval; 207ee3b213aSJames Wright OperatorApplyContext op_training_data_calc_ctx; 208ee3b213aSJames Wright NodalProjectionData filtered_grad_velo_proj; 209ee3b213aSJames Wright size_t training_data_array_dims[2]; 210ee3b213aSJames Wright PetscBool overwrite_training_data; 211ee3b213aSJames Wright } *SGS_DD_TrainingData; 212ee3b213aSJames Wright 213ee3b213aSJames Wright typedef struct { 2144e9802d1SJames Wright DM dm_filter; 21581530087SJames Wright PetscInt num_filtered_fields; 21681530087SJames Wright CeedInt *num_field_components; 217051427eeSJames Wright PetscInt field_prim_state, field_velo_prod; 2184e9802d1SJames Wright OperatorApplyContext op_rhs_ctx; 2194e9802d1SJames Wright KSP ksp; 2202029a677SJames Wright PetscBool do_mms_test; 2214e9802d1SJames Wright } *DiffFilterData; 2224e9802d1SJames Wright 2238146534cSJames Wright typedef struct { 2248146534cSJames Wright void *client; 2258146534cSJames Wright char rank_id_name[16]; 2268146534cSJames Wright PetscInt collocated_database_num_ranks; 2278146534cSJames Wright } *SmartSimData; 2288146534cSJames Wright 22977841947SLeila Ghaffari // PETSc user data 23077841947SLeila Ghaffari struct User_private { 23177841947SLeila Ghaffari MPI_Comm comm; 23277841947SLeila Ghaffari DM dm; 23377841947SLeila Ghaffari DM dm_viz; 23477841947SLeila Ghaffari Mat interp_viz; 23577841947SLeila Ghaffari Ceed ceed; 23677841947SLeila Ghaffari Units units; 23704292f7dSJames Wright Vec Q_loc, Q_dot_loc; 23877841947SLeila Ghaffari Physics phys; 23977841947SLeila Ghaffari AppCtx app_ctx; 24091c97f41SJames Wright CeedVector q_ceed, q_dot_ceed, g_ceed, x_ceed; 24191c97f41SJames Wright CeedOperator op_rhs_vol, op_ifunction_vol, op_ifunction; 24291c97f41SJames Wright Mat mat_ijacobian; 24304292f7dSJames Wright KSP mass_ksp; 2449ad5e8e4SJames Wright OperatorApplyContext op_rhs_ctx, op_strong_bc_ctx; 24515637395SJames Wright CeedScalar time_bc_set; 246cbef7084SJames Wright SpanStatsData spanstats; 247999ff5c7SJames Wright NodalProjectionData grad_velo_proj; 248cbef7084SJames Wright SgsDDData sgs_dd_data; 2494e9802d1SJames Wright DiffFilterData diff_filter; 2508146534cSJames Wright SmartSimData smartsim; 251ee3b213aSJames Wright SGS_DD_TrainingData sgs_dd_train; 25277841947SLeila Ghaffari }; 25377841947SLeila Ghaffari 25477841947SLeila Ghaffari // Units 25577841947SLeila Ghaffari struct Units_private { 25677841947SLeila Ghaffari // fundamental units 25777841947SLeila Ghaffari PetscScalar meter; 25877841947SLeila Ghaffari PetscScalar kilogram; 25977841947SLeila Ghaffari PetscScalar second; 26077841947SLeila Ghaffari PetscScalar Kelvin; 26177841947SLeila Ghaffari // derived units 26277841947SLeila Ghaffari PetscScalar Pascal; 26377841947SLeila Ghaffari PetscScalar J_per_kg_K; 26477841947SLeila Ghaffari PetscScalar m_per_squared_s; 26577841947SLeila Ghaffari PetscScalar W_per_m_K; 26677841947SLeila Ghaffari PetscScalar Joule; 26777841947SLeila Ghaffari }; 26877841947SLeila Ghaffari 26977841947SLeila Ghaffari // Boundary conditions 27077841947SLeila Ghaffari struct SimpleBC_private { 2712fe7aee7SLeila Ghaffari PetscInt num_wall, // Number of faces with wall BCs 2722fe7aee7SLeila Ghaffari wall_comps[5], // An array of constrained component numbers 2732fe7aee7SLeila Ghaffari num_comps, 2747c5bba50SJames Wright num_symmetry[3], // Number of faces with symmetry BCs 2759f844368SJames Wright num_inflow, num_outflow, num_freestream, num_slip; 2769f844368SJames Wright PetscInt walls[16], symmetries[3][16], inflows[16], outflows[16], freestreams[16], slips[16]; 27777841947SLeila Ghaffari }; 27877841947SLeila Ghaffari 27977841947SLeila Ghaffari // Struct that contains all enums and structs used for the physics of all problems 28077841947SLeila Ghaffari struct Physics_private { 28177841947SLeila Ghaffari PetscBool implicit; 28297baf651SJames Wright StateVariable state_var; 28311436a05SJames Wright CeedContextFieldLabel solution_time_label; 284cd4035ffSJames Wright CeedContextFieldLabel stg_solution_time_label; 28588626eedSJames Wright CeedContextFieldLabel timestep_size_label; 286841e4c73SJed Brown CeedContextFieldLabel ics_time_label; 287e334ad8fSJed Brown CeedContextFieldLabel ijacobian_time_shift_label; 28877841947SLeila Ghaffari }; 28977841947SLeila Ghaffari 29091e5af17SJed Brown typedef struct { 29191e5af17SJed Brown CeedQFunctionUser qfunction; 29291e5af17SJed Brown const char *qfunction_loc; 293841e4c73SJed Brown CeedQFunctionContext qfunction_context; 29491e5af17SJed Brown } ProblemQFunctionSpec; 29591e5af17SJed Brown 29677841947SLeila Ghaffari // Problem specific data 297841e4c73SJed Brown typedef struct ProblemData_private ProblemData; 298841e4c73SJed Brown struct ProblemData_private { 299e334ad8fSJed Brown CeedInt dim, q_data_size_vol, q_data_size_sur, jac_data_size_sur; 3001864f1c2SLeila Ghaffari CeedScalar dm_scale; 3012b730f8bSJeremy L Thompson ProblemQFunctionSpec setup_vol, setup_sur, ics, apply_vol_rhs, apply_vol_ifunction, apply_vol_ijacobian, apply_inflow, apply_outflow, 3029f844368SJames Wright apply_freestream, apply_slip, apply_inflow_jacobian, apply_outflow_jacobian, apply_freestream_jacobian, apply_slip_jacobian; 30377841947SLeila Ghaffari bool non_zero_time; 304752a08a7SJames Wright PetscBool bc_from_ics, use_strong_bc_ceed, uses_newtonian; 305367c849eSJames Wright PetscErrorCode (*print_info)(User, ProblemData *, AppCtx); 306841e4c73SJed Brown }; 30777841947SLeila Ghaffari 308841e4c73SJed Brown extern int FreeContextPetsc(void *); 309841e4c73SJed Brown 31077841947SLeila Ghaffari // ----------------------------------------------------------------------------- 31177841947SLeila Ghaffari // Set up problems 31277841947SLeila Ghaffari // ----------------------------------------------------------------------------- 31377841947SLeila Ghaffari // Set up function for each problem 31414712a6bSJames Wright extern PetscErrorCode NS_TAYLOR_GREEN(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 315530ad8c4SKenneth E. Jansen extern PetscErrorCode NS_GAUSSIAN_WAVE(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31646de7363SJames Wright extern PetscErrorCode NS_CHANNEL(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31746de7363SJames Wright extern PetscErrorCode NS_BLASIUS(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31846de7363SJames Wright extern PetscErrorCode NS_NEWTONIAN_IG(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 31946de7363SJames Wright extern PetscErrorCode NS_DENSITY_CURRENT(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 32046de7363SJames Wright extern PetscErrorCode NS_EULER_VORTEX(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 32146de7363SJames Wright extern PetscErrorCode NS_SHOCKTUBE(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 32246de7363SJames Wright extern PetscErrorCode NS_ADVECTION(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 32346de7363SJames Wright extern PetscErrorCode NS_ADVECTION2D(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 32477841947SLeila Ghaffari 32577841947SLeila Ghaffari // Print function for each problem 326367c849eSJames Wright extern PetscErrorCode PRINT_NEWTONIAN(User user, ProblemData *problem, AppCtx app_ctx); 32777841947SLeila Ghaffari 328367c849eSJames Wright extern PetscErrorCode PRINT_EULER_VORTEX(User user, ProblemData *problem, AppCtx app_ctx); 32977841947SLeila Ghaffari 330367c849eSJames Wright extern PetscErrorCode PRINT_SHOCKTUBE(User user, ProblemData *problem, AppCtx app_ctx); 331019b7682STimothy Aiken 332367c849eSJames Wright extern PetscErrorCode PRINT_ADVECTION(User user, ProblemData *problem, AppCtx app_ctx); 33377841947SLeila Ghaffari 334367c849eSJames Wright extern PetscErrorCode PRINT_ADVECTION2D(User user, ProblemData *problem, AppCtx app_ctx); 33577841947SLeila Ghaffari 3362e31f396SJames Wright PetscErrorCode PrintRunInfo(User user, Physics phys_ctx, ProblemData *problem, MPI_Comm comm); 3372e31f396SJames Wright 33877841947SLeila Ghaffari // ----------------------------------------------------------------------------- 33977841947SLeila Ghaffari // libCEED functions 34077841947SLeila Ghaffari // ----------------------------------------------------------------------------- 34177841947SLeila Ghaffari // Utility function to create local CEED restriction 342431cd09aSJames Wright PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height, DMLabel domain_label, CeedInt label_value, PetscInt dm_field, 343431cd09aSJames Wright CeedElemRestriction *elem_restr); 34477841947SLeila Ghaffari 345bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field, 346bb85d312SJames Wright CeedElemRestriction *restriction); 347bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCoordinateCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 348bb85d312SJames Wright CeedElemRestriction *restriction); 349bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionQDataCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 350bb85d312SJames Wright PetscInt q_data_size, CeedElemRestriction *restriction); 351bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCollocatedCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 352bb85d312SJames Wright PetscInt q_data_size, CeedElemRestriction *restriction); 35377841947SLeila Ghaffari 3540814d5a7SKenneth E. Jansen PetscErrorCode CreateBasisFromPlex(Ceed ceed, DM dm, DMLabel domain_label, CeedInt label_value, CeedInt height, CeedInt dm_field, CeedBasis *basis); 3550814d5a7SKenneth E. Jansen 35677841947SLeila Ghaffari // Utility function to create CEED Composite Operator for the entire domain 3572b730f8bSJeremy L Thompson PetscErrorCode CreateOperatorForDomain(Ceed ceed, DM dm, SimpleBC bc, CeedData ceed_data, Physics phys, CeedOperator op_apply_vol, 3582b730f8bSJeremy L Thompson CeedOperator op_apply_ijacobian_vol, CeedInt height, CeedInt P_sur, CeedInt Q_sur, CeedInt q_data_size_sur, 3592b730f8bSJeremy L Thompson CeedInt jac_data_size_sur, CeedOperator *op_apply, CeedOperator *op_apply_ijacobian); 36077841947SLeila Ghaffari 3612b730f8bSJeremy L Thompson PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user, AppCtx app_ctx, ProblemData *problem, SimpleBC bc); 36277841947SLeila Ghaffari 36377841947SLeila Ghaffari // ----------------------------------------------------------------------------- 36477841947SLeila Ghaffari // Time-stepping functions 36577841947SLeila Ghaffari // ----------------------------------------------------------------------------- 36604292f7dSJames Wright // Create KSP to solve the inverse mass operator for explicit time stepping schemes 367dfcf44b0SJames Wright PetscErrorCode CreateKSPMassOperator(User user, CeedData ceed_data); 36877841947SLeila Ghaffari 36977841947SLeila Ghaffari // RHS (Explicit time-stepper) function setup 37077841947SLeila Ghaffari PetscErrorCode RHS_NS(TS ts, PetscReal t, Vec Q, Vec G, void *user_data); 37177841947SLeila Ghaffari 37277841947SLeila Ghaffari // Implicit time-stepper function setup 3732b730f8bSJeremy L Thompson PetscErrorCode IFunction_NS(TS ts, PetscReal t, Vec Q, Vec Q_dot, Vec G, void *user_data); 37477841947SLeila Ghaffari 37577841947SLeila Ghaffari // User provided TS Monitor 3762b730f8bSJeremy L Thompson PetscErrorCode TSMonitor_NS(TS ts, PetscInt step_no, PetscReal time, Vec Q, void *ctx); 37777841947SLeila Ghaffari 37877841947SLeila Ghaffari // TS: Create, setup, and solve 3792b730f8bSJeremy L Thompson PetscErrorCode TSSolve_NS(DM dm, User user, AppCtx app_ctx, Physics phys, Vec *Q, PetscScalar *f_time, TS *ts); 38077841947SLeila Ghaffari 381a0b9a424SJames Wright // Update Boundary Values when time has changed 382a0b9a424SJames Wright PetscErrorCode UpdateBoundaryValues(User user, Vec Q_loc, PetscReal t); 383a0b9a424SJames Wright 38477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 38577841947SLeila Ghaffari // Setup DM 38677841947SLeila Ghaffari // ----------------------------------------------------------------------------- 3871864f1c2SLeila Ghaffari // Create mesh 3882b730f8bSJeremy L Thompson PetscErrorCode CreateDM(MPI_Comm comm, ProblemData *problem, MatType, VecType, DM *dm); 38977841947SLeila Ghaffari 39077841947SLeila Ghaffari // Set up DM 3910814d5a7SKenneth E. Jansen PetscErrorCode SetUpDM(DM dm, ProblemData *problem, PetscInt degree, PetscInt q_extra, SimpleBC bc, Physics phys); 392d68a66c4SJames Wright PetscErrorCode DMSetupByOrderBegin_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, 39385df0564SJames Wright PetscInt num_fields, const PetscInt *field_sizes, DM dm); 394d68a66c4SJames Wright PetscErrorCode DMSetupByOrderEnd_FEM(PetscBool setup_coords, DM dm); 395d68a66c4SJames Wright PetscErrorCode DMSetupByOrder_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, 39685df0564SJames Wright PetscInt num_fields, const PetscInt *field_sizes, DM dm); 39777841947SLeila Ghaffari 39877841947SLeila Ghaffari // Refine DM for high-order viz 3992b730f8bSJeremy L Thompson PetscErrorCode VizRefineDM(DM dm, User user, ProblemData *problem, SimpleBC bc, Physics phys); 40077841947SLeila Ghaffari 40177841947SLeila Ghaffari // ----------------------------------------------------------------------------- 40277841947SLeila Ghaffari // Process command line options 40377841947SLeila Ghaffari // ----------------------------------------------------------------------------- 40477841947SLeila Ghaffari // Register problems to be available on the command line 40577841947SLeila Ghaffari PetscErrorCode RegisterProblems_NS(AppCtx app_ctx); 40677841947SLeila Ghaffari 40777841947SLeila Ghaffari // Process general command line options 4082b730f8bSJeremy L Thompson PetscErrorCode ProcessCommandLineOptions(MPI_Comm comm, AppCtx app_ctx, SimpleBC bc); 40977841947SLeila Ghaffari 41077841947SLeila Ghaffari // ----------------------------------------------------------------------------- 41177841947SLeila Ghaffari // Miscellaneous utility functions 41277841947SLeila Ghaffari // ----------------------------------------------------------------------------- 413*3a10b0eeSJames Wright PetscErrorCode GetInverseMultiplicity(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field, 414*3a10b0eeSJames Wright PetscBool get_global_multiplicity, CeedElemRestriction *elem_restr_inv_multiplicity, 415*3a10b0eeSJames Wright CeedVector *inv_multiplicity); 4162b730f8bSJeremy L Thompson PetscErrorCode ICs_FixMultiplicity(DM dm, CeedData ceed_data, User user, Vec Q_loc, Vec Q, CeedScalar time); 41777841947SLeila Ghaffari 4183c9e7ad1SJames Wright PetscErrorCode DMPlexInsertBoundaryValues_FromICs(DM dm, PetscBool insert_essential, Vec Q_loc, PetscReal time, Vec face_geom_FVM, Vec cell_geom_FVM, 4192b730f8bSJeremy L Thompson Vec grad_FVM); 42077841947SLeila Ghaffari 42177841947SLeila Ghaffari // Compare reference solution values with current test run for CI 4223c9e7ad1SJames Wright PetscErrorCode RegressionTest(AppCtx app_ctx, Vec Q); 42377841947SLeila Ghaffari 42477841947SLeila Ghaffari // Get error for problems with exact solutions 4253c9e7ad1SJames Wright PetscErrorCode PrintError(CeedData ceed_data, DM dm, User user, Vec Q, PetscScalar final_time); 42677841947SLeila Ghaffari 42777841947SLeila Ghaffari // Post-processing 4283c9e7ad1SJames Wright PetscErrorCode PostProcess(TS ts, CeedData ceed_data, DM dm, ProblemData *problem, User user, Vec Q, PetscScalar final_time); 42977841947SLeila Ghaffari 43077841947SLeila Ghaffari // -- Gather initial Q values in case of continuation of simulation 43177841947SLeila Ghaffari PetscErrorCode SetupICsFromBinary(MPI_Comm comm, AppCtx app_ctx, Vec Q); 43277841947SLeila Ghaffari 43377841947SLeila Ghaffari // Record boundary values from initial condition 4343c9e7ad1SJames Wright PetscErrorCode SetBCsFromICs(DM dm, Vec Q, Vec Q_loc); 43577841947SLeila Ghaffari 4364de8550aSJed Brown // Versioning token for binary checkpoints 4370de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN; // for backwards compatibility 4380de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_32; 4390de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_64; 4404de8550aSJed Brown 441ef080ff9SJames Wright // Create appropriate mass qfunction based on number of components N 442ef080ff9SJames Wright PetscErrorCode CreateMassQFunction(Ceed ceed, CeedInt N, CeedInt q_data_size, CeedQFunction *qf); 443ef080ff9SJames Wright 444999ff5c7SJames Wright PetscErrorCode NodalProjectionDataDestroy(NodalProjectionData context); 445999ff5c7SJames Wright 446cbef7084SJames Wright PetscErrorCode PhastaDatFileOpen(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2], 4478b892a05SJames Wright FILE **fp); 4488b892a05SJames Wright 449cbef7084SJames Wright PetscErrorCode PhastaDatFileGetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows); 4508b892a05SJames Wright 451cbef7084SJames Wright PetscErrorCode PhastaDatFileReadToArrayReal(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscReal array[]); 4524cc9442bSJames Wright 4538b892a05SJames Wright // ----------------------------------------------------------------------------- 4548b892a05SJames Wright // Turbulence Statistics Collection Functions 4558b892a05SJames Wright // ----------------------------------------------------------------------------- 4568b892a05SJames Wright 457f5452247SJames Wright PetscErrorCode TurbulenceStatisticsSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 458f5452247SJames Wright PetscErrorCode TSMonitor_TurbulenceStatistics(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); 459f5452247SJames Wright PetscErrorCode TurbulenceStatisticsDestroy(User user, CeedData ceed_data); 460fd170fd0SJames Wright 46177841947SLeila Ghaffari // ----------------------------------------------------------------------------- 4624cc9442bSJames Wright // Data-Driven Subgrid Stress (DD-SGS) Modeling Functions 4634cc9442bSJames Wright // ----------------------------------------------------------------------------- 4644cc9442bSJames Wright 4658f5ab23bSJames Wright PetscErrorCode SgsDDSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 466cbef7084SJames Wright PetscErrorCode SgsDDDataDestroy(SgsDDData sgs_dd_data); 4678f5ab23bSJames Wright PetscErrorCode SgsDDApplyIFunction(User user, const Vec Q_loc, Vec G_loc); 4687618d7b7SJames Wright PetscErrorCode VelocityGradientProjectionSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem, StateVariable state_var_input, 4697618d7b7SJames Wright CeedElemRestriction elem_restr_input, CeedBasis basis_input, NodalProjectionData *pgrad_velo_proj); 4707618d7b7SJames Wright PetscErrorCode VelocityGradientProjectionApply(NodalProjectionData grad_velo_proj, Vec Q_loc, Vec VelocityGradient); 471052409adSJames Wright PetscErrorCode GridAnisotropyTensorProjectionSetupApply(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, 472052409adSJames Wright CeedVector *grid_aniso_vector); 473900aec75SJames Wright PetscErrorCode GridAnisotropyTensorCalculateCollocatedVector(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, 474900aec75SJames Wright CeedVector *aniso_colloc_ceed, PetscInt *num_comp_aniso); 4754cc9442bSJames Wright 4764cc9442bSJames Wright // ----------------------------------------------------------------------------- 477dada6cc0SJames Wright // Boundary Condition Related Functions 478dada6cc0SJames Wright // ----------------------------------------------------------------------------- 479dada6cc0SJames Wright 480dada6cc0SJames Wright // Setup StrongBCs that use QFunctions 48166170c20SJames Wright PetscErrorCode SetupStrongBC_Ceed(Ceed ceed, CeedData ceed_data, DM dm, User user, ProblemData *problem, SimpleBC bc); 482b7c563b6SJeremy L Thompson 483d310b3d3SAdeleke O. Bankole PetscErrorCode FreestreamBCSetup(ProblemData *problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); 4848a94a473SJed Brown PetscErrorCode OutflowBCSetup(ProblemData *problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); 4859f844368SJames Wright PetscErrorCode SlipBCSetup(ProblemData *problem, DM dm, void *ctx, CeedQFunctionContext newtonian_ig_qfctx); 4862b730f8bSJeremy L Thompson 4874e9802d1SJames Wright // ----------------------------------------------------------------------------- 4884e9802d1SJames Wright // Differential Filtering Functions 4894e9802d1SJames Wright // ----------------------------------------------------------------------------- 4904e9802d1SJames Wright 4914e9802d1SJames Wright PetscErrorCode DifferentialFilterSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 4924e9802d1SJames Wright PetscErrorCode DifferentialFilterDataDestroy(DiffFilterData diff_filter); 4934e9802d1SJames Wright PetscErrorCode TSMonitor_DifferentialFilter(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); 4944e9802d1SJames Wright PetscErrorCode DifferentialFilterApply(User user, const PetscReal solution_time, const Vec Q, Vec Filtered_Solution); 495cbef7084SJames Wright PetscErrorCode DifferentialFilterMmsICSetup(ProblemData *problem); 4964e9802d1SJames Wright 4978146534cSJames Wright // ----------------------------------------------------------------------------- 4988146534cSJames Wright // SGS Data-Driven Training via SmartSim 4998146534cSJames Wright // ----------------------------------------------------------------------------- 5008146534cSJames Wright PetscErrorCode SmartSimSetup(User user); 501b306c3f1SJames Wright PetscErrorCode SmartSimDataDestroy(SmartSimData smartsim); 502ee3b213aSJames Wright PetscErrorCode SGS_DD_TrainingSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 503ee3b213aSJames Wright PetscErrorCode TSMonitor_SGS_DD_Training(TS ts, PetscInt step_num, PetscReal solution_time, Vec Q, void *ctx); 5041a7db67cSJames Wright PetscErrorCode TSPostStep_SGS_DD_Training(TS ts); 505ee3b213aSJames Wright PetscErrorCode SGS_DD_TrainingDataDestroy(SGS_DD_TrainingData sgs_dd_train); 5068146534cSJames Wright 507b7c563b6SJeremy L Thompson #endif // libceed_fluids_examples_navier_stokes_h 508