13d8e8822SJeremy L Thompson // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors. 23d8e8822SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 377841947SLeila Ghaffari // 43d8e8822SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause 577841947SLeila Ghaffari // 63d8e8822SJeremy L Thompson // This file is part of CEED: http://github.com/ceed 777841947SLeila Ghaffari 8b7c563b6SJeremy L Thompson #ifndef libceed_fluids_examples_navier_stokes_h 9b7c563b6SJeremy L Thompson #define libceed_fluids_examples_navier_stokes_h 1077841947SLeila Ghaffari 1177841947SLeila Ghaffari #include <ceed.h> 12*91c97f41SJames Wright #include <mat-ceed.h> 1377841947SLeila Ghaffari #include <petscts.h> 1477841947SLeila Ghaffari #include <stdbool.h> 152b730f8bSJeremy L Thompson 164021610dSJames Wright #include "./include/petsc_ops.h" 1797baf651SJames Wright #include "qfunctions/newtonian_types.h" 182b730f8bSJeremy L Thompson #include "qfunctions/stabilization_types.h" 1977841947SLeila Ghaffari 20d31f425aSJeremy L Thompson #if PETSC_VERSION_LT(3, 20, 0) 21d31f425aSJeremy L Thompson #error "PETSc v3.20 or later is required" 2277841947SLeila Ghaffari #endif 2377841947SLeila Ghaffari 2449a40c8aSKenneth E. Jansen #if PETSC_VERSION_LT(3, 21, 0) 2549a40c8aSKenneth E. Jansen #define DMSetCoordinateDisc(a, b, c) DMProjectCoordinates(a, b) 2649a40c8aSKenneth E. Jansen #endif 2749a40c8aSKenneth E. Jansen 28d9d458caSJames Wright #define PetscCallCeed(ceed, ...) \ 29a424bcd0SJames Wright do { \ 30d9d458caSJames Wright int ierr = __VA_ARGS__; \ 31a424bcd0SJames Wright if (ierr != CEED_ERROR_SUCCESS) { \ 32a424bcd0SJames Wright const char *error_message; \ 33a424bcd0SJames Wright CeedGetErrorMessage(ceed, &error_message); \ 34a424bcd0SJames Wright SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "%s", error_message); \ 35a424bcd0SJames Wright } \ 36a424bcd0SJames Wright } while (0) 37a424bcd0SJames Wright 3877841947SLeila Ghaffari // ----------------------------------------------------------------------------- 3977841947SLeila Ghaffari // Enums 4077841947SLeila Ghaffari // ----------------------------------------------------------------------------- 4177841947SLeila Ghaffari // Translate PetscMemType to CeedMemType 422b730f8bSJeremy L Thompson static inline CeedMemType MemTypeP2C(PetscMemType mem_type) { return PetscMemTypeDevice(mem_type) ? CEED_MEM_DEVICE : CEED_MEM_HOST; } 4377841947SLeila Ghaffari 4477841947SLeila Ghaffari // Euler - test cases 4577841947SLeila Ghaffari typedef enum { 46bc7bbd5dSLeila Ghaffari EULER_TEST_ISENTROPIC_VORTEX = 0, 4777841947SLeila Ghaffari EULER_TEST_1 = 1, 4877841947SLeila Ghaffari EULER_TEST_2 = 2, 4977841947SLeila Ghaffari EULER_TEST_3 = 3, 5077841947SLeila Ghaffari EULER_TEST_4 = 4, 5132f166c6SLeila Ghaffari EULER_TEST_5 = 5, 5277841947SLeila Ghaffari } EulerTestType; 532b730f8bSJeremy L Thompson static const char *const EulerTestTypes[] = {"isentropic_vortex", "test_1", "test_2", "test_3", "test_4", "test_5", 542b730f8bSJeremy L Thompson "EulerTestType", "EULER_TEST_", NULL}; 5577841947SLeila Ghaffari 56700ae941SJames Wright // Advection - Wind types 57700ae941SJames Wright static const char *const WindTypes[] = {"rotation", "translation", "WindType", "WIND_", NULL}; 58700ae941SJames Wright 597b77ddfdSJames Wright // Advection - Initial Condition Types 607b77ddfdSJames Wright static const char *const AdvectionICTypes[] = {"sphere", "cylinder", "cosine_hill", "skew", "AdvectionICType", "ADVECTIONIC_", NULL}; 61700ae941SJames Wright 62700ae941SJames Wright // Advection - Bubble Continuity Types 6393639ffbSJames Wright static const char *const BubbleContinuityTypes[] = {"smooth", "back_sharp", "thick", "cosine", "BubbleContinuityType", "BUBBLE_CONTINUITY_", NULL}; 64700ae941SJames Wright 6577841947SLeila Ghaffari // Stabilization methods 662b730f8bSJeremy L Thompson static const char *const StabilizationTypes[] = {"none", "SU", "SUPG", "StabilizationType", "STAB_", NULL}; 6777841947SLeila Ghaffari 6851b00d91SJames Wright // Test mode type 698fb33541SJames Wright typedef enum { 708fb33541SJames Wright TESTTYPE_NONE = 0, 718fb33541SJames Wright TESTTYPE_SOLVER = 1, 728fb33541SJames Wright TESTTYPE_TURB_SPANSTATS = 2, 73970fa48bSJames Wright TESTTYPE_DIFF_FILTER = 3, 748fb33541SJames Wright } TestType; 75970fa48bSJames Wright static const char *const TestTypes[] = {"none", "solver", "turb_spanstats", "diff_filter", "TestType", "TESTTYPE_", NULL}; 768fb33541SJames Wright 772526956eSJames Wright // Subgrid-Stress mode type 7819ffbc25SJames Wright typedef enum { 7919ffbc25SJames Wright SGS_MODEL_NONE = 0, 8019ffbc25SJames Wright SGS_MODEL_DATA_DRIVEN = 1, 8119ffbc25SJames Wright } SGSModelType; 8219ffbc25SJames Wright static const char *const SGSModelTypes[] = {"none", "data_driven", "SGSModelType", "SGS_MODEL_", NULL}; 8319ffbc25SJames Wright 842526956eSJames Wright // Mesh transformation type 852526956eSJames Wright typedef enum { 862526956eSJames Wright MESH_TRANSFORM_NONE = 0, 872526956eSJames Wright MESH_TRANSFORM_PLATEMESH = 1, 882526956eSJames Wright } MeshTransformType; 892526956eSJames Wright static const char *const MeshTransformTypes[] = {"none", "platemesh", "MeshTransformType", "MESH_TRANSFORM_", NULL}; 902526956eSJames Wright 91bd882c8aSJames Wright static const char *const DifferentialFilterDampingFunctions[] = { 92bd882c8aSJames Wright "none", "van_driest", "mms", "DifferentialFilterDampingFunction", "DIFF_FILTER_DAMP_", NULL}; 93bd882c8aSJames Wright 9477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 9575d1798cSJames Wright // Log Events 9675d1798cSJames Wright // ----------------------------------------------------------------------------- 9775d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorApply; 9875d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssemble; 9975d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssembleDiagonal; 10075d1798cSJames Wright extern PetscLogEvent FLUIDS_CeedOperatorAssemblePointBlockDiagonal; 101844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Init; 102844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Meta; 103844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_SmartRedis_Train; 104844b3d4aSRiccardo Balin extern PetscLogEvent FLUIDS_TrainDataCompute; 1053737f832SJames Wright extern PetscLogEvent FLUIDS_DifferentialFilter; 1063737f832SJames Wright extern PetscLogEvent FLUIDS_VelocityGradientProjection; 10775d1798cSJames Wright PetscErrorCode RegisterLogEvents(); 10875d1798cSJames Wright 10975d1798cSJames Wright // ----------------------------------------------------------------------------- 11077841947SLeila Ghaffari // Structs 11177841947SLeila Ghaffari // ----------------------------------------------------------------------------- 11277841947SLeila Ghaffari // Structs declarations 11377841947SLeila Ghaffari typedef struct AppCtx_private *AppCtx; 11477841947SLeila Ghaffari typedef struct CeedData_private *CeedData; 11577841947SLeila Ghaffari typedef struct User_private *User; 11677841947SLeila Ghaffari typedef struct Units_private *Units; 11777841947SLeila Ghaffari typedef struct SimpleBC_private *SimpleBC; 11877841947SLeila Ghaffari typedef struct Physics_private *Physics; 11977841947SLeila Ghaffari 12077841947SLeila Ghaffari // Application context from user command line options 12177841947SLeila Ghaffari struct AppCtx_private { 12277841947SLeila Ghaffari // libCEED arguments 12377841947SLeila Ghaffari char ceed_resource[PETSC_MAX_PATH_LEN]; // libCEED backend 12477841947SLeila Ghaffari PetscInt degree; 12577841947SLeila Ghaffari PetscInt q_extra; 126544be873SJed Brown // Solver arguments 127544be873SJed Brown MatType amat_type; 12877841947SLeila Ghaffari // Post-processing arguments 12937cbb16aSJed Brown PetscInt checkpoint_interval; 13077841947SLeila Ghaffari PetscInt viz_refine; 13177841947SLeila Ghaffari PetscInt cont_steps; 1324de8550aSJed Brown PetscReal cont_time; 13369293791SJames Wright char cont_file[PETSC_MAX_PATH_LEN]; 13469293791SJames Wright char cont_time_file[PETSC_MAX_PATH_LEN]; 13577841947SLeila Ghaffari char output_dir[PETSC_MAX_PATH_LEN]; 13669293791SJames Wright PetscBool add_stepnum2bin; 13737cbb16aSJed Brown PetscBool checkpoint_vtk; 13877841947SLeila Ghaffari // Problem type arguments 13977841947SLeila Ghaffari PetscFunctionList problems; 14077841947SLeila Ghaffari char problem_name[PETSC_MAX_PATH_LEN]; 14177841947SLeila Ghaffari // Test mode arguments 1428fb33541SJames Wright TestType test_type; 14377841947SLeila Ghaffari PetscScalar test_tol; 144b7d66439SJames Wright char test_file_path[PETSC_MAX_PATH_LEN]; 145b7d66439SJames Wright // Turbulent spanwise statistics 146b7d66439SJames Wright PetscBool turb_spanstats_enable; 147b7d66439SJames Wright PetscInt turb_spanstats_collect_interval; 148b7d66439SJames Wright PetscInt turb_spanstats_viewer_interval; 149b7d66439SJames Wright PetscViewer turb_spanstats_viewer; 150b7d66439SJames Wright PetscViewerFormat turb_spanstats_viewer_format; 151ca69d878SAdeleke O. Bankole // Wall forces 152ca69d878SAdeleke O. Bankole struct { 153ca69d878SAdeleke O. Bankole PetscInt num_wall; 154ca69d878SAdeleke O. Bankole PetscInt *walls; 155ca69d878SAdeleke O. Bankole PetscViewer viewer; 156ca69d878SAdeleke O. Bankole PetscViewerFormat viewer_format; 157ca69d878SAdeleke O. Bankole PetscBool header_written; 158ca69d878SAdeleke O. Bankole } wall_forces; 15919ffbc25SJames Wright // Subgrid Stress Model 16019ffbc25SJames Wright SGSModelType sgs_model_type; 16128134cfaSJames Wright PetscBool sgs_train_enable; 1624e9802d1SJames Wright // Differential Filtering 1634e9802d1SJames Wright PetscBool diff_filter_monitor; 1642526956eSJames Wright MeshTransformType mesh_transform_type; 16577841947SLeila Ghaffari }; 16677841947SLeila Ghaffari 16777841947SLeila Ghaffari // libCEED data struct 16877841947SLeila Ghaffari struct CeedData_private { 16977841947SLeila Ghaffari CeedVector x_coord, q_data; 1702b730f8bSJeremy L Thompson CeedBasis basis_x, basis_xc, basis_q, basis_x_sur, basis_q_sur, basis_xc_sur; 17177841947SLeila Ghaffari CeedElemRestriction elem_restr_x, elem_restr_q, elem_restr_qd_i; 1725263e9c6SJames Wright CeedOperator op_setup_vol; 1735263e9c6SJames Wright OperatorApplyContext op_ics_ctx; 174d310b3d3SAdeleke O. Bankole CeedQFunction qf_setup_vol, qf_ics, qf_rhs_vol, qf_ifunction_vol, qf_setup_sur, qf_apply_inflow, qf_apply_inflow_jacobian, qf_apply_outflow, 1759f844368SJames Wright qf_apply_outflow_jacobian, qf_apply_freestream, qf_apply_freestream_jacobian, qf_apply_slip, qf_apply_slip_jacobian; 17677841947SLeila Ghaffari }; 17777841947SLeila Ghaffari 17851ee423eSJames Wright typedef struct { 17951ee423eSJames Wright DM dm; 1801737222fSJames Wright PetscSF sf; // For communicating child data to parents 181ed331efdSJames Wright OperatorApplyContext op_stats_collect_ctx, op_proj_rhs_ctx; 18251ee423eSJames Wright PetscInt num_comp_stats; 183ed331efdSJames Wright Vec Child_Stats_loc, Parent_Stats_loc; 184a175e481SJames Wright KSP ksp; // For the L^2 projection solve 185a175e481SJames Wright CeedScalar span_width; // spanwise width of the child domain 186b7d66439SJames Wright PetscBool do_mms_test; 1874021610dSJames Wright OperatorApplyContext mms_error_ctx; 188495b9769SJames Wright CeedContextFieldLabel solution_time_label, previous_time_label; 189cbef7084SJames Wright } SpanStatsData; 19051ee423eSJames Wright 191999ff5c7SJames Wright typedef struct { 192999ff5c7SJames Wright DM dm; 193999ff5c7SJames Wright PetscInt num_comp; 194999ff5c7SJames Wright OperatorApplyContext l2_rhs_ctx; 195999ff5c7SJames Wright KSP ksp; 196999ff5c7SJames Wright } *NodalProjectionData; 197999ff5c7SJames Wright 1986b3fb9aeSJames Wright typedef PetscErrorCode (*SgsDDNodalStressEval)(User user, Vec Q_loc, Vec VelocityGradient, Vec SGSNodal_loc); 1991250e899SJames Wright typedef PetscErrorCode (*SgsDDNodalStressInference)(Vec DD_Inputs_loc, Vec DD_Outputs_loc, void *ctx); 2009a17443dSJames Wright typedef struct { 2011250e899SJames Wright DM dm_sgs, dm_dd_inputs, dm_dd_outputs; 2029a17443dSJames Wright PetscInt num_comp_sgs; 2031250e899SJames Wright CeedInt num_comp_inputs, num_comp_outputs; 2041250e899SJames Wright OperatorApplyContext op_nodal_evaluation_ctx, op_nodal_dd_inputs_ctx, op_nodal_dd_outputs_ctx, op_sgs_apply_ctx; 2051250e899SJames Wright CeedVector sgs_nodal_ceed, grad_velo_ceed; 2066b3fb9aeSJames Wright SgsDDNodalStressEval sgs_nodal_eval; 2071250e899SJames Wright SgsDDNodalStressInference sgs_nodal_inference; 2081250e899SJames Wright void *sgs_nodal_inference_ctx; 2091250e899SJames Wright PetscErrorCode (*sgs_nodal_inference_ctx_destroy)(void *ctx); 210cbef7084SJames Wright } *SgsDDData; 2119a17443dSJames Wright 2124e9802d1SJames Wright typedef struct { 213ee3b213aSJames Wright DM dm_dd_training; 214ee3b213aSJames Wright PetscInt num_comp_dd_inputs, write_data_interval; 215ee3b213aSJames Wright OperatorApplyContext op_training_data_calc_ctx; 216ee3b213aSJames Wright NodalProjectionData filtered_grad_velo_proj; 217ee3b213aSJames Wright size_t training_data_array_dims[2]; 218ee3b213aSJames Wright PetscBool overwrite_training_data; 219ee3b213aSJames Wright } *SGS_DD_TrainingData; 220ee3b213aSJames Wright 221ee3b213aSJames Wright typedef struct { 2224e9802d1SJames Wright DM dm_filter; 22381530087SJames Wright PetscInt num_filtered_fields; 22481530087SJames Wright CeedInt *num_field_components; 225051427eeSJames Wright PetscInt field_prim_state, field_velo_prod; 2264e9802d1SJames Wright OperatorApplyContext op_rhs_ctx; 2274e9802d1SJames Wright KSP ksp; 2282029a677SJames Wright PetscBool do_mms_test; 2294e9802d1SJames Wright } *DiffFilterData; 2304e9802d1SJames Wright 2318146534cSJames Wright typedef struct { 2328146534cSJames Wright void *client; 2338146534cSJames Wright char rank_id_name[16]; 2348146534cSJames Wright PetscInt collocated_database_num_ranks; 2358146534cSJames Wright } *SmartSimData; 2368146534cSJames Wright 23777841947SLeila Ghaffari // PETSc user data 23877841947SLeila Ghaffari struct User_private { 23977841947SLeila Ghaffari MPI_Comm comm; 24077841947SLeila Ghaffari DM dm; 24177841947SLeila Ghaffari DM dm_viz; 24277841947SLeila Ghaffari Mat interp_viz; 24377841947SLeila Ghaffari Ceed ceed; 24477841947SLeila Ghaffari Units units; 24504292f7dSJames Wright Vec Q_loc, Q_dot_loc; 24677841947SLeila Ghaffari Physics phys; 24777841947SLeila Ghaffari AppCtx app_ctx; 248*91c97f41SJames Wright CeedVector q_ceed, q_dot_ceed, g_ceed, x_ceed; 249*91c97f41SJames Wright CeedOperator op_rhs_vol, op_ifunction_vol, op_ifunction; 250*91c97f41SJames Wright Mat mat_ijacobian; 25104292f7dSJames Wright KSP mass_ksp; 2529ad5e8e4SJames Wright OperatorApplyContext op_rhs_ctx, op_strong_bc_ctx; 25315637395SJames Wright CeedScalar time_bc_set; 254cbef7084SJames Wright SpanStatsData spanstats; 255999ff5c7SJames Wright NodalProjectionData grad_velo_proj; 256cbef7084SJames Wright SgsDDData sgs_dd_data; 2574e9802d1SJames Wright DiffFilterData diff_filter; 2588146534cSJames Wright SmartSimData smartsim; 259ee3b213aSJames Wright SGS_DD_TrainingData sgs_dd_train; 26077841947SLeila Ghaffari }; 26177841947SLeila Ghaffari 26277841947SLeila Ghaffari // Units 26377841947SLeila Ghaffari struct Units_private { 26477841947SLeila Ghaffari // fundamental units 26577841947SLeila Ghaffari PetscScalar meter; 26677841947SLeila Ghaffari PetscScalar kilogram; 26777841947SLeila Ghaffari PetscScalar second; 26877841947SLeila Ghaffari PetscScalar Kelvin; 26977841947SLeila Ghaffari // derived units 27077841947SLeila Ghaffari PetscScalar Pascal; 27177841947SLeila Ghaffari PetscScalar J_per_kg_K; 27277841947SLeila Ghaffari PetscScalar m_per_squared_s; 27377841947SLeila Ghaffari PetscScalar W_per_m_K; 27477841947SLeila Ghaffari PetscScalar Joule; 27577841947SLeila Ghaffari }; 27677841947SLeila Ghaffari 27777841947SLeila Ghaffari // Boundary conditions 27877841947SLeila Ghaffari struct SimpleBC_private { 2792fe7aee7SLeila Ghaffari PetscInt num_wall, // Number of faces with wall BCs 2802fe7aee7SLeila Ghaffari wall_comps[5], // An array of constrained component numbers 2812fe7aee7SLeila Ghaffari num_comps, 2827c5bba50SJames Wright num_symmetry[3], // Number of faces with symmetry BCs 2839f844368SJames Wright num_inflow, num_outflow, num_freestream, num_slip; 2849f844368SJames Wright PetscInt walls[16], symmetries[3][16], inflows[16], outflows[16], freestreams[16], slips[16]; 28577841947SLeila Ghaffari }; 28677841947SLeila Ghaffari 28777841947SLeila Ghaffari // Struct that contains all enums and structs used for the physics of all problems 28877841947SLeila Ghaffari struct Physics_private { 28977841947SLeila Ghaffari PetscBool implicit; 29097baf651SJames Wright StateVariable state_var; 29111436a05SJames Wright CeedContextFieldLabel solution_time_label; 292cd4035ffSJames Wright CeedContextFieldLabel stg_solution_time_label; 29388626eedSJames Wright CeedContextFieldLabel timestep_size_label; 294841e4c73SJed Brown CeedContextFieldLabel ics_time_label; 295e334ad8fSJed Brown CeedContextFieldLabel ijacobian_time_shift_label; 29677841947SLeila Ghaffari }; 29777841947SLeila Ghaffari 29891e5af17SJed Brown typedef struct { 29991e5af17SJed Brown CeedQFunctionUser qfunction; 30091e5af17SJed Brown const char *qfunction_loc; 301841e4c73SJed Brown CeedQFunctionContext qfunction_context; 30291e5af17SJed Brown } ProblemQFunctionSpec; 30391e5af17SJed Brown 30477841947SLeila Ghaffari // Problem specific data 305841e4c73SJed Brown typedef struct ProblemData_private ProblemData; 306841e4c73SJed Brown struct ProblemData_private { 307e334ad8fSJed Brown CeedInt dim, q_data_size_vol, q_data_size_sur, jac_data_size_sur; 3081864f1c2SLeila Ghaffari CeedScalar dm_scale; 3092b730f8bSJeremy L Thompson ProblemQFunctionSpec setup_vol, setup_sur, ics, apply_vol_rhs, apply_vol_ifunction, apply_vol_ijacobian, apply_inflow, apply_outflow, 3109f844368SJames Wright apply_freestream, apply_slip, apply_inflow_jacobian, apply_outflow_jacobian, apply_freestream_jacobian, apply_slip_jacobian; 31177841947SLeila Ghaffari bool non_zero_time; 312752a08a7SJames Wright PetscBool bc_from_ics, use_strong_bc_ceed, uses_newtonian; 313367c849eSJames Wright PetscErrorCode (*print_info)(User, ProblemData *, AppCtx); 314841e4c73SJed Brown }; 31577841947SLeila Ghaffari 316841e4c73SJed Brown extern int FreeContextPetsc(void *); 317841e4c73SJed Brown 31877841947SLeila Ghaffari // ----------------------------------------------------------------------------- 31977841947SLeila Ghaffari // Set up problems 32077841947SLeila Ghaffari // ----------------------------------------------------------------------------- 32177841947SLeila Ghaffari // Set up function for each problem 32214712a6bSJames Wright extern PetscErrorCode NS_TAYLOR_GREEN(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 323530ad8c4SKenneth E. Jansen extern PetscErrorCode NS_GAUSSIAN_WAVE(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 32446de7363SJames Wright extern PetscErrorCode NS_CHANNEL(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 32546de7363SJames Wright extern PetscErrorCode NS_BLASIUS(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 32646de7363SJames Wright extern PetscErrorCode NS_NEWTONIAN_IG(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 32746de7363SJames Wright extern PetscErrorCode NS_DENSITY_CURRENT(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 32846de7363SJames Wright extern PetscErrorCode NS_EULER_VORTEX(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 32946de7363SJames Wright extern PetscErrorCode NS_SHOCKTUBE(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 33046de7363SJames Wright extern PetscErrorCode NS_ADVECTION(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 33146de7363SJames Wright extern PetscErrorCode NS_ADVECTION2D(ProblemData *problem, DM dm, void *ctx, SimpleBC bc); 33277841947SLeila Ghaffari 33377841947SLeila Ghaffari // Print function for each problem 334367c849eSJames Wright extern PetscErrorCode PRINT_NEWTONIAN(User user, ProblemData *problem, AppCtx app_ctx); 33577841947SLeila Ghaffari 336367c849eSJames Wright extern PetscErrorCode PRINT_EULER_VORTEX(User user, ProblemData *problem, AppCtx app_ctx); 33777841947SLeila Ghaffari 338367c849eSJames Wright extern PetscErrorCode PRINT_SHOCKTUBE(User user, ProblemData *problem, AppCtx app_ctx); 339019b7682STimothy Aiken 340367c849eSJames Wright extern PetscErrorCode PRINT_ADVECTION(User user, ProblemData *problem, AppCtx app_ctx); 34177841947SLeila Ghaffari 342367c849eSJames Wright extern PetscErrorCode PRINT_ADVECTION2D(User user, ProblemData *problem, AppCtx app_ctx); 34377841947SLeila Ghaffari 3442e31f396SJames Wright PetscErrorCode PrintRunInfo(User user, Physics phys_ctx, ProblemData *problem, MPI_Comm comm); 3452e31f396SJames Wright 34677841947SLeila Ghaffari // ----------------------------------------------------------------------------- 34777841947SLeila Ghaffari // libCEED functions 34877841947SLeila Ghaffari // ----------------------------------------------------------------------------- 34977841947SLeila Ghaffari // Utility function to create local CEED restriction 350431cd09aSJames Wright PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height, DMLabel domain_label, CeedInt label_value, PetscInt dm_field, 351431cd09aSJames Wright CeedElemRestriction *elem_restr); 35277841947SLeila Ghaffari 353bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, PetscInt dm_field, 354bb85d312SJames Wright CeedElemRestriction *restriction); 355bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCoordinateCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 356bb85d312SJames Wright CeedElemRestriction *restriction); 357bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionQDataCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 358bb85d312SJames Wright PetscInt q_data_size, CeedElemRestriction *restriction); 359bb85d312SJames Wright PetscErrorCode DMPlexCeedElemRestrictionCollocatedCreate(Ceed ceed, DM dm, DMLabel domain_label, PetscInt label_value, PetscInt height, 360bb85d312SJames Wright PetscInt q_data_size, CeedElemRestriction *restriction); 36177841947SLeila Ghaffari 3620814d5a7SKenneth E. Jansen PetscErrorCode CreateBasisFromPlex(Ceed ceed, DM dm, DMLabel domain_label, CeedInt label_value, CeedInt height, CeedInt dm_field, CeedBasis *basis); 3630814d5a7SKenneth E. Jansen 36477841947SLeila Ghaffari // Utility function to create CEED Composite Operator for the entire domain 3652b730f8bSJeremy L Thompson PetscErrorCode CreateOperatorForDomain(Ceed ceed, DM dm, SimpleBC bc, CeedData ceed_data, Physics phys, CeedOperator op_apply_vol, 3662b730f8bSJeremy L Thompson CeedOperator op_apply_ijacobian_vol, CeedInt height, CeedInt P_sur, CeedInt Q_sur, CeedInt q_data_size_sur, 3672b730f8bSJeremy L Thompson CeedInt jac_data_size_sur, CeedOperator *op_apply, CeedOperator *op_apply_ijacobian); 36877841947SLeila Ghaffari 3692b730f8bSJeremy L Thompson PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user, AppCtx app_ctx, ProblemData *problem, SimpleBC bc); 37077841947SLeila Ghaffari 37177841947SLeila Ghaffari // ----------------------------------------------------------------------------- 37277841947SLeila Ghaffari // Time-stepping functions 37377841947SLeila Ghaffari // ----------------------------------------------------------------------------- 37404292f7dSJames Wright // Create KSP to solve the inverse mass operator for explicit time stepping schemes 375dfcf44b0SJames Wright PetscErrorCode CreateKSPMassOperator(User user, CeedData ceed_data); 37677841947SLeila Ghaffari 37777841947SLeila Ghaffari // RHS (Explicit time-stepper) function setup 37877841947SLeila Ghaffari PetscErrorCode RHS_NS(TS ts, PetscReal t, Vec Q, Vec G, void *user_data); 37977841947SLeila Ghaffari 38077841947SLeila Ghaffari // Implicit time-stepper function setup 3812b730f8bSJeremy L Thompson PetscErrorCode IFunction_NS(TS ts, PetscReal t, Vec Q, Vec Q_dot, Vec G, void *user_data); 38277841947SLeila Ghaffari 38377841947SLeila Ghaffari // User provided TS Monitor 3842b730f8bSJeremy L Thompson PetscErrorCode TSMonitor_NS(TS ts, PetscInt step_no, PetscReal time, Vec Q, void *ctx); 38577841947SLeila Ghaffari 38677841947SLeila Ghaffari // TS: Create, setup, and solve 3872b730f8bSJeremy L Thompson PetscErrorCode TSSolve_NS(DM dm, User user, AppCtx app_ctx, Physics phys, Vec *Q, PetscScalar *f_time, TS *ts); 38877841947SLeila Ghaffari 389a0b9a424SJames Wright // Update Boundary Values when time has changed 390a0b9a424SJames Wright PetscErrorCode UpdateBoundaryValues(User user, Vec Q_loc, PetscReal t); 391a0b9a424SJames Wright 39277841947SLeila Ghaffari // ----------------------------------------------------------------------------- 39377841947SLeila Ghaffari // Setup DM 39477841947SLeila Ghaffari // ----------------------------------------------------------------------------- 3951864f1c2SLeila Ghaffari // Create mesh 3962b730f8bSJeremy L Thompson PetscErrorCode CreateDM(MPI_Comm comm, ProblemData *problem, MatType, VecType, DM *dm); 39777841947SLeila Ghaffari 39877841947SLeila Ghaffari // Set up DM 3990814d5a7SKenneth E. Jansen PetscErrorCode SetUpDM(DM dm, ProblemData *problem, PetscInt degree, PetscInt q_extra, SimpleBC bc, Physics phys); 400d68a66c4SJames Wright PetscErrorCode DMSetupByOrderBegin_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, 40185df0564SJames Wright PetscInt num_fields, const PetscInt *field_sizes, DM dm); 402d68a66c4SJames Wright PetscErrorCode DMSetupByOrderEnd_FEM(PetscBool setup_coords, DM dm); 403d68a66c4SJames Wright PetscErrorCode DMSetupByOrder_FEM(PetscBool setup_faces, PetscBool setup_coords, PetscInt degree, PetscInt coord_order, PetscInt q_extra, 40485df0564SJames Wright PetscInt num_fields, const PetscInt *field_sizes, DM dm); 40577841947SLeila Ghaffari 40677841947SLeila Ghaffari // Refine DM for high-order viz 4072b730f8bSJeremy L Thompson PetscErrorCode VizRefineDM(DM dm, User user, ProblemData *problem, SimpleBC bc, Physics phys); 40877841947SLeila Ghaffari 40977841947SLeila Ghaffari // ----------------------------------------------------------------------------- 41077841947SLeila Ghaffari // Process command line options 41177841947SLeila Ghaffari // ----------------------------------------------------------------------------- 41277841947SLeila Ghaffari // Register problems to be available on the command line 41377841947SLeila Ghaffari PetscErrorCode RegisterProblems_NS(AppCtx app_ctx); 41477841947SLeila Ghaffari 41577841947SLeila Ghaffari // Process general command line options 4162b730f8bSJeremy L Thompson PetscErrorCode ProcessCommandLineOptions(MPI_Comm comm, AppCtx app_ctx, SimpleBC bc); 41777841947SLeila Ghaffari 41877841947SLeila Ghaffari // ----------------------------------------------------------------------------- 41977841947SLeila Ghaffari // Miscellaneous utility functions 42077841947SLeila Ghaffari // ----------------------------------------------------------------------------- 4212b730f8bSJeremy L Thompson PetscErrorCode ICs_FixMultiplicity(DM dm, CeedData ceed_data, User user, Vec Q_loc, Vec Q, CeedScalar time); 42277841947SLeila Ghaffari 4233c9e7ad1SJames Wright PetscErrorCode DMPlexInsertBoundaryValues_FromICs(DM dm, PetscBool insert_essential, Vec Q_loc, PetscReal time, Vec face_geom_FVM, Vec cell_geom_FVM, 4242b730f8bSJeremy L Thompson Vec grad_FVM); 42577841947SLeila Ghaffari 42677841947SLeila Ghaffari // Compare reference solution values with current test run for CI 4273c9e7ad1SJames Wright PetscErrorCode RegressionTest(AppCtx app_ctx, Vec Q); 42877841947SLeila Ghaffari 42977841947SLeila Ghaffari // Get error for problems with exact solutions 4303c9e7ad1SJames Wright PetscErrorCode PrintError(CeedData ceed_data, DM dm, User user, Vec Q, PetscScalar final_time); 43177841947SLeila Ghaffari 43277841947SLeila Ghaffari // Post-processing 4333c9e7ad1SJames Wright PetscErrorCode PostProcess(TS ts, CeedData ceed_data, DM dm, ProblemData *problem, User user, Vec Q, PetscScalar final_time); 43477841947SLeila Ghaffari 43577841947SLeila Ghaffari // -- Gather initial Q values in case of continuation of simulation 43677841947SLeila Ghaffari PetscErrorCode SetupICsFromBinary(MPI_Comm comm, AppCtx app_ctx, Vec Q); 43777841947SLeila Ghaffari 43877841947SLeila Ghaffari // Record boundary values from initial condition 4393c9e7ad1SJames Wright PetscErrorCode SetBCsFromICs(DM dm, Vec Q, Vec Q_loc); 44077841947SLeila Ghaffari 4414de8550aSJed Brown // Versioning token for binary checkpoints 4420de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN; // for backwards compatibility 4430de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_32; 4440de6a49fSJames Wright extern const PetscInt32 FLUIDS_FILE_TOKEN_64; 4454de8550aSJed Brown 446ef080ff9SJames Wright // Create appropriate mass qfunction based on number of components N 447ef080ff9SJames Wright PetscErrorCode CreateMassQFunction(Ceed ceed, CeedInt N, CeedInt q_data_size, CeedQFunction *qf); 448ef080ff9SJames Wright 449999ff5c7SJames Wright PetscErrorCode NodalProjectionDataDestroy(NodalProjectionData context); 450999ff5c7SJames Wright 451cbef7084SJames Wright PetscErrorCode PhastaDatFileOpen(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2], 4528b892a05SJames Wright FILE **fp); 4538b892a05SJames Wright 454cbef7084SJames Wright PetscErrorCode PhastaDatFileGetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows); 4558b892a05SJames Wright 456cbef7084SJames Wright PetscErrorCode PhastaDatFileReadToArrayReal(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscReal array[]); 4574cc9442bSJames Wright 458457e73b2SJames Wright PetscErrorCode IntArrayC2P(PetscInt num_entries, CeedInt **array_ceed, PetscInt **array_petsc); 459457e73b2SJames Wright PetscErrorCode IntArrayP2C(PetscInt num_entries, PetscInt **array_petsc, CeedInt **array_ceed); 460457e73b2SJames Wright 4618b892a05SJames Wright // ----------------------------------------------------------------------------- 4628b892a05SJames Wright // Turbulence Statistics Collection Functions 4638b892a05SJames Wright // ----------------------------------------------------------------------------- 4648b892a05SJames Wright 465f5452247SJames Wright PetscErrorCode TurbulenceStatisticsSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 466f5452247SJames Wright PetscErrorCode TSMonitor_TurbulenceStatistics(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); 467f5452247SJames Wright PetscErrorCode TurbulenceStatisticsDestroy(User user, CeedData ceed_data); 468fd170fd0SJames Wright 46977841947SLeila Ghaffari // ----------------------------------------------------------------------------- 4704cc9442bSJames Wright // Data-Driven Subgrid Stress (DD-SGS) Modeling Functions 4714cc9442bSJames Wright // ----------------------------------------------------------------------------- 4724cc9442bSJames Wright 4738f5ab23bSJames Wright PetscErrorCode SgsDDSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 474cbef7084SJames Wright PetscErrorCode SgsDDDataDestroy(SgsDDData sgs_dd_data); 4758f5ab23bSJames Wright PetscErrorCode SgsDDApplyIFunction(User user, const Vec Q_loc, Vec G_loc); 4767618d7b7SJames Wright PetscErrorCode VelocityGradientProjectionSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem, StateVariable state_var_input, 4777618d7b7SJames Wright CeedElemRestriction elem_restr_input, CeedBasis basis_input, NodalProjectionData *pgrad_velo_proj); 4787618d7b7SJames Wright PetscErrorCode VelocityGradientProjectionApply(NodalProjectionData grad_velo_proj, Vec Q_loc, Vec VelocityGradient); 479052409adSJames Wright PetscErrorCode GridAnisotropyTensorProjectionSetupApply(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, 480052409adSJames Wright CeedVector *grid_aniso_vector); 481900aec75SJames Wright PetscErrorCode GridAnisotropyTensorCalculateCollocatedVector(Ceed ceed, User user, CeedData ceed_data, CeedElemRestriction *elem_restr_grid_aniso, 482900aec75SJames Wright CeedVector *aniso_colloc_ceed, PetscInt *num_comp_aniso); 4834cc9442bSJames Wright 4844cc9442bSJames Wright // ----------------------------------------------------------------------------- 485dada6cc0SJames Wright // Boundary Condition Related Functions 486dada6cc0SJames Wright // ----------------------------------------------------------------------------- 487dada6cc0SJames Wright 488dada6cc0SJames Wright // Setup StrongBCs that use QFunctions 48966170c20SJames Wright PetscErrorCode SetupStrongBC_Ceed(Ceed ceed, CeedData ceed_data, DM dm, User user, ProblemData *problem, SimpleBC bc); 490b7c563b6SJeremy L Thompson 491d310b3d3SAdeleke O. Bankole PetscErrorCode FreestreamBCSetup(ProblemData *problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); 4928a94a473SJed Brown PetscErrorCode OutflowBCSetup(ProblemData *problem, DM dm, void *ctx, NewtonianIdealGasContext newtonian_ig_ctx, const StatePrimitive *reference); 4939f844368SJames Wright PetscErrorCode SlipBCSetup(ProblemData *problem, DM dm, void *ctx, CeedQFunctionContext newtonian_ig_qfctx); 4942b730f8bSJeremy L Thompson 4954e9802d1SJames Wright // ----------------------------------------------------------------------------- 4964e9802d1SJames Wright // Differential Filtering Functions 4974e9802d1SJames Wright // ----------------------------------------------------------------------------- 4984e9802d1SJames Wright 4994e9802d1SJames Wright PetscErrorCode DifferentialFilterSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 5004e9802d1SJames Wright PetscErrorCode DifferentialFilterDataDestroy(DiffFilterData diff_filter); 5014e9802d1SJames Wright PetscErrorCode TSMonitor_DifferentialFilter(TS ts, PetscInt steps, PetscReal solution_time, Vec Q, void *ctx); 5024e9802d1SJames Wright PetscErrorCode DifferentialFilterApply(User user, const PetscReal solution_time, const Vec Q, Vec Filtered_Solution); 503cbef7084SJames Wright PetscErrorCode DifferentialFilterMmsICSetup(ProblemData *problem); 5044e9802d1SJames Wright 5058146534cSJames Wright // ----------------------------------------------------------------------------- 5068146534cSJames Wright // SGS Data-Driven Training via SmartSim 5078146534cSJames Wright // ----------------------------------------------------------------------------- 5088146534cSJames Wright PetscErrorCode SmartSimSetup(User user); 509b306c3f1SJames Wright PetscErrorCode SmartSimDataDestroy(SmartSimData smartsim); 510ee3b213aSJames Wright PetscErrorCode SGS_DD_TrainingSetup(Ceed ceed, User user, CeedData ceed_data, ProblemData *problem); 511ee3b213aSJames Wright PetscErrorCode TSMonitor_SGS_DD_Training(TS ts, PetscInt step_num, PetscReal solution_time, Vec Q, void *ctx); 5121a7db67cSJames Wright PetscErrorCode TSPostStep_SGS_DD_Training(TS ts); 513ee3b213aSJames Wright PetscErrorCode SGS_DD_TrainingDataDestroy(SGS_DD_TrainingData sgs_dd_train); 5148146534cSJames Wright 515b7c563b6SJeremy L Thompson #endif // libceed_fluids_examples_navier_stokes_h 516