1ba6664aeSJames Wright // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors. 2ba6664aeSJames Wright // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 3ba6664aeSJames Wright // 4ba6664aeSJames Wright // SPDX-License-Identifier: BSD-2-Clause 5ba6664aeSJames Wright // 6ba6664aeSJames Wright // This file is part of CEED: http://github.com/ceed 7ba6664aeSJames Wright 8ba6664aeSJames Wright /// @file 9ba6664aeSJames Wright /// Implementation of the Synthetic Turbulence Generation (STG) algorithm 10ba6664aeSJames Wright /// presented in Shur et al. 2014 11ba6664aeSJames Wright 122b730f8bSJeremy L Thompson #include "stg_shur14.h" 132b730f8bSJeremy L Thompson 14*49aac155SJeremy L Thompson #include <ceed.h> 15ba6664aeSJames Wright #include <math.h> 16*49aac155SJeremy L Thompson #include <petscdm.h> 172b730f8bSJeremy L Thompson #include <stdlib.h> 182b730f8bSJeremy L Thompson 19ba6664aeSJames Wright #include "../navierstokes.h" 20ba6664aeSJames Wright #include "../qfunctions/stg_shur14.h" 21ba6664aeSJames Wright 2265dd5cafSJames Wright STGShur14Context global_stg_ctx; 2365dd5cafSJames Wright 24ba6664aeSJames Wright /* 25ba6664aeSJames Wright * @brief Perform Cholesky decomposition on array of symmetric 3x3 matrices 26ba6664aeSJames Wright * 27ea61e9acSJeremy L Thompson * This assumes the input matrices are in order [11,22,33,12,13,23]. 28ea61e9acSJeremy L Thompson * This format is also used for the output. 29ba6664aeSJames Wright * 30ba6664aeSJames Wright * @param[in] comm MPI_Comm 31ba6664aeSJames Wright * @param[in] nprofs Number of matrices in Rij 32ba6664aeSJames Wright * @param[in] Rij Array of the symmetric matrices [6,nprofs] 33ba6664aeSJames Wright * @param[out] Cij Array of the Cholesky Decomposition matrices, [6,nprofs] 34ba6664aeSJames Wright */ 352b730f8bSJeremy L Thompson PetscErrorCode CalcCholeskyDecomp(MPI_Comm comm, PetscInt nprofs, const CeedScalar Rij[6][nprofs], CeedScalar Cij[6][nprofs]) { 36ba6664aeSJames Wright PetscFunctionBeginUser; 37ba6664aeSJames Wright for (PetscInt i = 0; i < nprofs; i++) { 38ba6664aeSJames Wright Cij[0][i] = sqrt(Rij[0][i]); 39ba6664aeSJames Wright Cij[3][i] = Rij[3][i] / Cij[0][i]; 40ba6664aeSJames Wright Cij[1][i] = sqrt(Rij[1][i] - pow(Cij[3][i], 2)); 41ba6664aeSJames Wright Cij[4][i] = Rij[4][i] / Cij[0][i]; 42ba6664aeSJames Wright Cij[5][i] = (Rij[5][i] - Cij[3][i] * Cij[4][i]) / Cij[1][i]; 43ba6664aeSJames Wright Cij[2][i] = sqrt(Rij[2][i] - pow(Cij[4][i], 2) - pow(Cij[5][i], 2)); 44ba6664aeSJames Wright 452b730f8bSJeremy L Thompson if (isnan(Cij[0][i]) || isnan(Cij[1][i]) || isnan(Cij[2][i])) { 462b730f8bSJeremy L Thompson SETERRQ(comm, -1, "Cholesky decomposition failed at profile point %" PetscInt_FMT ". Either STGInflow has non-SPD matrix or contains nan.", 472b730f8bSJeremy L Thompson i + 1); 482b730f8bSJeremy L Thompson } 49ba6664aeSJames Wright } 50ba6664aeSJames Wright PetscFunctionReturn(0); 51ba6664aeSJames Wright } 52ba6664aeSJames Wright 53ba6664aeSJames Wright /* 54ba6664aeSJames Wright * @brief Open a PHASTA *.dat file, grabbing dimensions and file pointer 55ba6664aeSJames Wright * 56ea61e9acSJeremy L Thompson * This function opens the file specified by `path` using `PetscFOpen` and passes the file pointer in `fp`. 57ea61e9acSJeremy L Thompson * It is not closed in this function, thus `fp` must be closed sometime after this function has been called (using `PetscFClose` for example). 58ba6664aeSJames Wright * 59ea61e9acSJeremy L Thompson * Assumes that the first line of the file has the number of rows and columns as the only two entries, separated by a single space. 60ba6664aeSJames Wright * 61ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 62ba6664aeSJames Wright * @param[in] path Path to the file 63ba6664aeSJames Wright * @param[in] char_array_len Length of the character array that should contain each line 64ba6664aeSJames Wright * @param[out] dims Dimensions of the file, taken from the first line of the file 65ba6664aeSJames Wright * @param[out] fp File pointer to the opened file 66ba6664aeSJames Wright */ 672b730f8bSJeremy L Thompson static PetscErrorCode OpenPHASTADatFile(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], const PetscInt char_array_len, PetscInt dims[2], 682b730f8bSJeremy L Thompson FILE **fp) { 69ba6664aeSJames Wright PetscInt ndims; 70ba6664aeSJames Wright char line[char_array_len]; 71ba6664aeSJames Wright char **array; 72ba6664aeSJames Wright 73ba6664aeSJames Wright PetscFunctionBeginUser; 7424941a69SJames Wright PetscCall(PetscFOpen(comm, path, "r", fp)); 7524941a69SJames Wright PetscCall(PetscSynchronizedFGets(comm, *fp, char_array_len, line)); 7624941a69SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 772b730f8bSJeremy L Thompson if (ndims != 2) { 782b730f8bSJeremy L Thompson SETERRQ(comm, -1, "Found %" PetscInt_FMT " dimensions instead of 2 on the first line of %s", ndims, path); 792b730f8bSJeremy L Thompson } 80ba6664aeSJames Wright 81ba6664aeSJames Wright for (PetscInt i = 0; i < ndims; i++) dims[i] = atoi(array[i]); 8224941a69SJames Wright PetscCall(PetscStrToArrayDestroy(ndims, array)); 832b730f8bSJeremy L Thompson 84ba6664aeSJames Wright PetscFunctionReturn(0); 85ba6664aeSJames Wright } 86ba6664aeSJames Wright 87ba6664aeSJames Wright /* 88ea61e9acSJeremy L Thompson * @brief Get the number of rows for the PHASTA file at path. 89ba6664aeSJames Wright * 90ea61e9acSJeremy L Thompson * Assumes that the first line of the file has the number of rows and columns as the only two entries, separated by a single space. 91ba6664aeSJames Wright * 92ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 93ba6664aeSJames Wright * @param[in] path Path to the file 94ba6664aeSJames Wright * @param[out] nrows Number of rows 95ba6664aeSJames Wright */ 962b730f8bSJeremy L Thompson static PetscErrorCode GetNRows(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], PetscInt *nrows) { 97ba6664aeSJames Wright const PetscInt char_array_len = 512; 98ba6664aeSJames Wright PetscInt dims[2]; 99ba6664aeSJames Wright FILE *fp; 100ba6664aeSJames Wright 101ba6664aeSJames Wright PetscFunctionBeginUser; 10224941a69SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 103ba6664aeSJames Wright *nrows = dims[0]; 10424941a69SJames Wright PetscCall(PetscFClose(comm, fp)); 1052b730f8bSJeremy L Thompson 106ba6664aeSJames Wright PetscFunctionReturn(0); 107ba6664aeSJames Wright } 108ba6664aeSJames Wright 109ba6664aeSJames Wright /* 110ba6664aeSJames Wright * @brief Read the STGInflow file and load the contents into stg_ctx 111ba6664aeSJames Wright * 112ea61e9acSJeremy L Thompson * Assumes that the first line of the file has the number of rows and columns as the only two entries, separated by a single space. 113ea61e9acSJeremy L Thompson * Assumes there are 14 columns in the file. 114ba6664aeSJames Wright * 115ea61e9acSJeremy L Thompson * Function calculates the Cholesky decomposition from the Reynolds stress profile found in the file. 116ba6664aeSJames Wright * 117ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 118ba6664aeSJames Wright * @param[in] path Path to the STGInflow.dat file 119ea61e9acSJeremy L Thompson * @param[in,out] stg_ctx STGShur14Context where the data will be loaded into 120ba6664aeSJames Wright */ 1212b730f8bSJeremy L Thompson static PetscErrorCode ReadSTGInflow(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], STGShur14Context stg_ctx) { 122ba6664aeSJames Wright PetscInt ndims, dims[2]; 123ba6664aeSJames Wright FILE *fp; 124ba6664aeSJames Wright const PetscInt char_array_len = 512; 125ba6664aeSJames Wright char line[char_array_len]; 126ba6664aeSJames Wright char **array; 127ba6664aeSJames Wright 128ba6664aeSJames Wright PetscFunctionBeginUser; 129ba6664aeSJames Wright 13024941a69SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 131ba6664aeSJames Wright 132ba6664aeSJames Wright CeedScalar rij[6][stg_ctx->nprofs]; 133175f00a6SJames Wright CeedScalar *wall_dist = &stg_ctx->data[stg_ctx->offsets.wall_dist]; 134ba6664aeSJames Wright CeedScalar *eps = &stg_ctx->data[stg_ctx->offsets.eps]; 135ba6664aeSJames Wright CeedScalar *lt = &stg_ctx->data[stg_ctx->offsets.lt]; 1362b730f8bSJeremy L Thompson CeedScalar(*ubar)[stg_ctx->nprofs] = (CeedScalar(*)[stg_ctx->nprofs]) & stg_ctx->data[stg_ctx->offsets.ubar]; 137ba6664aeSJames Wright 138ba6664aeSJames Wright for (PetscInt i = 0; i < stg_ctx->nprofs; i++) { 13924941a69SJames Wright PetscCall(PetscSynchronizedFGets(comm, fp, char_array_len, line)); 14024941a69SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 1412b730f8bSJeremy L Thompson if (ndims < dims[1]) { 1422b730f8bSJeremy L Thompson SETERRQ(comm, -1, "Line %" PetscInt_FMT " of %s does not contain enough columns (%" PetscInt_FMT " instead of %" PetscInt_FMT ")", i, path, 1432b730f8bSJeremy L Thompson ndims, dims[1]); 1442b730f8bSJeremy L Thompson } 145ba6664aeSJames Wright 146175f00a6SJames Wright wall_dist[i] = (CeedScalar)atof(array[0]); 147ba6664aeSJames Wright ubar[0][i] = (CeedScalar)atof(array[1]); 148ba6664aeSJames Wright ubar[1][i] = (CeedScalar)atof(array[2]); 149ba6664aeSJames Wright ubar[2][i] = (CeedScalar)atof(array[3]); 150ba6664aeSJames Wright rij[0][i] = (CeedScalar)atof(array[4]); 151ba6664aeSJames Wright rij[1][i] = (CeedScalar)atof(array[5]); 152ba6664aeSJames Wright rij[2][i] = (CeedScalar)atof(array[6]); 153ba6664aeSJames Wright rij[3][i] = (CeedScalar)atof(array[7]); 154ba6664aeSJames Wright rij[4][i] = (CeedScalar)atof(array[8]); 155ba6664aeSJames Wright rij[5][i] = (CeedScalar)atof(array[9]); 156ba6664aeSJames Wright lt[i] = (CeedScalar)atof(array[12]); 157ba6664aeSJames Wright eps[i] = (CeedScalar)atof(array[13]); 158ba6664aeSJames Wright 1592b730f8bSJeremy L Thompson if (wall_dist[i] < 0) SETERRQ(comm, -1, "Distance to wall in %s cannot be negative", path); 1602b730f8bSJeremy L Thompson if (lt[i] < 0) SETERRQ(comm, -1, "Turbulent length scale in %s cannot be negative", path); 1612b730f8bSJeremy L Thompson if (eps[i] < 0) SETERRQ(comm, -1, "Turbulent dissipation in %s cannot be negative", path); 162ba6664aeSJames Wright } 1632b730f8bSJeremy L Thompson CeedScalar(*cij)[stg_ctx->nprofs] = (CeedScalar(*)[stg_ctx->nprofs]) & stg_ctx->data[stg_ctx->offsets.cij]; 16424941a69SJames Wright PetscCall(CalcCholeskyDecomp(comm, stg_ctx->nprofs, rij, cij)); 16524941a69SJames Wright PetscCall(PetscFClose(comm, fp)); 1662b730f8bSJeremy L Thompson 167ba6664aeSJames Wright PetscFunctionReturn(0); 168ba6664aeSJames Wright } 169ba6664aeSJames Wright 170ba6664aeSJames Wright /* 171ba6664aeSJames Wright * @brief Read the STGRand file and load the contents into stg_ctx 172ba6664aeSJames Wright * 173ea61e9acSJeremy L Thompson * Assumes that the first line of the file has the number of rows and columns as the only two entries, separated by a single space. 174ea61e9acSJeremy L Thompson * Assumes there are 7 columns in the file. 175ba6664aeSJames Wright * 176ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 177ba6664aeSJames Wright * @param[in] path Path to the STGRand.dat file 178ea61e9acSJeremy L Thompson * @param[in,out] stg_ctx STGShur14Context where the data will be loaded into 179ba6664aeSJames Wright */ 1802b730f8bSJeremy L Thompson static PetscErrorCode ReadSTGRand(const MPI_Comm comm, const char path[PETSC_MAX_PATH_LEN], STGShur14Context stg_ctx) { 181ba6664aeSJames Wright PetscInt ndims, dims[2]; 182ba6664aeSJames Wright FILE *fp; 183ba6664aeSJames Wright const PetscInt char_array_len = 512; 184ba6664aeSJames Wright char line[char_array_len]; 185ba6664aeSJames Wright char **array; 186ba6664aeSJames Wright 187ba6664aeSJames Wright PetscFunctionBeginUser; 18824941a69SJames Wright PetscCall(OpenPHASTADatFile(comm, path, char_array_len, dims, &fp)); 189ba6664aeSJames Wright 190ba6664aeSJames Wright CeedScalar *phi = &stg_ctx->data[stg_ctx->offsets.phi]; 1912b730f8bSJeremy L Thompson CeedScalar(*d)[stg_ctx->nmodes] = (CeedScalar(*)[stg_ctx->nmodes]) & stg_ctx->data[stg_ctx->offsets.d]; 1922b730f8bSJeremy L Thompson CeedScalar(*sigma)[stg_ctx->nmodes] = (CeedScalar(*)[stg_ctx->nmodes]) & stg_ctx->data[stg_ctx->offsets.sigma]; 193ba6664aeSJames Wright 194ba6664aeSJames Wright for (PetscInt i = 0; i < stg_ctx->nmodes; i++) { 19524941a69SJames Wright PetscCall(PetscSynchronizedFGets(comm, fp, char_array_len, line)); 19624941a69SJames Wright PetscCall(PetscStrToArray(line, ' ', &ndims, &array)); 1972b730f8bSJeremy L Thompson if (ndims < dims[1]) { 1982b730f8bSJeremy L Thompson SETERRQ(comm, -1, "Line %" PetscInt_FMT " of %s does not contain enough columns (%" PetscInt_FMT " instead of %" PetscInt_FMT ")", i, path, 1992b730f8bSJeremy L Thompson ndims, dims[1]); 2002b730f8bSJeremy L Thompson } 201ba6664aeSJames Wright 202ba6664aeSJames Wright d[0][i] = (CeedScalar)atof(array[0]); 203ba6664aeSJames Wright d[1][i] = (CeedScalar)atof(array[1]); 204ba6664aeSJames Wright d[2][i] = (CeedScalar)atof(array[2]); 205ba6664aeSJames Wright phi[i] = (CeedScalar)atof(array[3]); 206ba6664aeSJames Wright sigma[0][i] = (CeedScalar)atof(array[4]); 207ba6664aeSJames Wright sigma[1][i] = (CeedScalar)atof(array[5]); 208ba6664aeSJames Wright sigma[2][i] = (CeedScalar)atof(array[6]); 209ba6664aeSJames Wright } 21024941a69SJames Wright PetscCall(PetscFClose(comm, fp)); 2112b730f8bSJeremy L Thompson 212ba6664aeSJames Wright PetscFunctionReturn(0); 213ba6664aeSJames Wright } 214ba6664aeSJames Wright 215ba6664aeSJames Wright /* 216ba6664aeSJames Wright * @brief Read STG data from input paths and put in STGShur14Context 217ba6664aeSJames Wright * 218ba6664aeSJames Wright * Reads data from input paths and puts them into a STGShur14Context object. 219ea61e9acSJeremy L Thompson * Data stored initially in `*pstg_ctx` will be copied over to the new STGShur14Context instance. 220ba6664aeSJames Wright * 221ba6664aeSJames Wright * @param[in] comm MPI_Comm for the program 222ba6664aeSJames Wright * @param[in] dm DM for the program 223ba6664aeSJames Wright * @param[in] stg_inflow_path Path to STGInflow.dat file 224ba6664aeSJames Wright * @param[in] stg_rand_path Path to STGRand.dat file 225ea61e9acSJeremy L Thompson * @param[in,out] pstg_ctx Pointer to STGShur14Context where the data will be loaded into 226ba6664aeSJames Wright */ 2272b730f8bSJeremy L Thompson PetscErrorCode GetSTGContextData(const MPI_Comm comm, const DM dm, char stg_inflow_path[PETSC_MAX_PATH_LEN], char stg_rand_path[PETSC_MAX_PATH_LEN], 2282b730f8bSJeremy L Thompson STGShur14Context *pstg_ctx, const CeedScalar ynodes[]) { 229ba6664aeSJames Wright PetscInt nmodes, nprofs; 230ba6664aeSJames Wright STGShur14Context stg_ctx; 231ba6664aeSJames Wright PetscFunctionBeginUser; 232ba6664aeSJames Wright 233ba6664aeSJames Wright // Get options 23424941a69SJames Wright PetscCall(GetNRows(comm, stg_rand_path, &nmodes)); 23524941a69SJames Wright PetscCall(GetNRows(comm, stg_inflow_path, &nprofs)); 236*49aac155SJeremy L Thompson if (nmodes > STG_NMODES_MAX) { 2372b730f8bSJeremy L Thompson SETERRQ(comm, 1, 2382b730f8bSJeremy L Thompson "Number of wavemodes in %s (%" PetscInt_FMT ") exceeds STG_NMODES_MAX (%" PetscInt_FMT 2392b730f8bSJeremy L Thompson "). " 2402b730f8bSJeremy L Thompson "Change size of STG_NMODES_MAX and recompile", 2412b730f8bSJeremy L Thompson stg_rand_path, nmodes, STG_NMODES_MAX); 242*49aac155SJeremy L Thompson } 243ba6664aeSJames Wright 244ba6664aeSJames Wright { 245ba6664aeSJames Wright STGShur14Context s; 24624941a69SJames Wright PetscCall(PetscCalloc1(1, &s)); 247ba6664aeSJames Wright *s = **pstg_ctx; 248ba6664aeSJames Wright s->nmodes = nmodes; 249ba6664aeSJames Wright s->nprofs = nprofs; 250ba6664aeSJames Wright s->offsets.sigma = 0; 251ba6664aeSJames Wright s->offsets.d = nmodes * 3; 252ba6664aeSJames Wright s->offsets.phi = s->offsets.d + nmodes * 3; 253ba6664aeSJames Wright s->offsets.kappa = s->offsets.phi + nmodes; 254175f00a6SJames Wright s->offsets.wall_dist = s->offsets.kappa + nmodes; 255175f00a6SJames Wright s->offsets.ubar = s->offsets.wall_dist + nprofs; 256ba6664aeSJames Wright s->offsets.cij = s->offsets.ubar + nprofs * 3; 257ba6664aeSJames Wright s->offsets.eps = s->offsets.cij + nprofs * 6; 258ba6664aeSJames Wright s->offsets.lt = s->offsets.eps + nprofs; 2594e139266SJames Wright s->offsets.ynodes = s->offsets.lt + nprofs; 2604e139266SJames Wright PetscInt total_num_scalars = s->offsets.ynodes + s->nynodes; 261ba6664aeSJames Wright s->total_bytes = sizeof(*stg_ctx) + total_num_scalars * sizeof(stg_ctx->data[0]); 26224941a69SJames Wright PetscCall(PetscMalloc(s->total_bytes, &stg_ctx)); 263ba6664aeSJames Wright *stg_ctx = *s; 26424941a69SJames Wright PetscCall(PetscFree(s)); 265ba6664aeSJames Wright } 266ba6664aeSJames Wright 26724941a69SJames Wright PetscCall(ReadSTGInflow(comm, stg_inflow_path, stg_ctx)); 26824941a69SJames Wright PetscCall(ReadSTGRand(comm, stg_rand_path, stg_ctx)); 269ba6664aeSJames Wright 2704e139266SJames Wright if (stg_ctx->nynodes > 0) { 2714e139266SJames Wright CeedScalar *ynodes_ctx = &stg_ctx->data[stg_ctx->offsets.ynodes]; 2724e139266SJames Wright for (PetscInt i = 0; i < stg_ctx->nynodes; i++) ynodes_ctx[i] = ynodes[i]; 2734e139266SJames Wright } 2744e139266SJames Wright 275ba6664aeSJames Wright // -- Calculate kappa 276ba6664aeSJames Wright { 277ba6664aeSJames Wright CeedScalar *kappa = &stg_ctx->data[stg_ctx->offsets.kappa]; 278175f00a6SJames Wright CeedScalar *wall_dist = &stg_ctx->data[stg_ctx->offsets.wall_dist]; 279ba6664aeSJames Wright CeedScalar *lt = &stg_ctx->data[stg_ctx->offsets.lt]; 280ba6664aeSJames Wright CeedScalar le, le_max = 0; 281ba6664aeSJames Wright 2822b730f8bSJeremy L Thompson CeedPragmaSIMD for (PetscInt i = 0; i < stg_ctx->nprofs; i++) { 283175f00a6SJames Wright le = PetscMin(2 * wall_dist[i], 3 * lt[i]); 284ba6664aeSJames Wright if (le_max < le) le_max = le; 285ba6664aeSJames Wright } 286ba6664aeSJames Wright CeedScalar kmin = M_PI / le_max; 287ba6664aeSJames Wright 2882b730f8bSJeremy L Thompson CeedPragmaSIMD for (PetscInt i = 0; i < stg_ctx->nmodes; i++) { kappa[i] = kmin * pow(stg_ctx->alpha, i); } 289ba6664aeSJames Wright } // end calculate kappa 290ba6664aeSJames Wright 29124941a69SJames Wright PetscCall(PetscFree(*pstg_ctx)); 292ba6664aeSJames Wright *pstg_ctx = stg_ctx; 293ba6664aeSJames Wright PetscFunctionReturn(0); 294ba6664aeSJames Wright } 295ba6664aeSJames Wright 2962b730f8bSJeremy L Thompson PetscErrorCode SetupSTG(const MPI_Comm comm, const DM dm, ProblemData *problem, User user, const bool prescribe_T, const CeedScalar theta0, 2972b730f8bSJeremy L Thompson const CeedScalar P0, const CeedScalar ynodes[], const CeedInt nynodes) { 298ba6664aeSJames Wright char stg_inflow_path[PETSC_MAX_PATH_LEN] = "./STGInflow.dat"; 299ba6664aeSJames Wright char stg_rand_path[PETSC_MAX_PATH_LEN] = "./STGRand.dat"; 3002b730f8bSJeremy L Thompson PetscBool mean_only = PETSC_FALSE, use_stgstrong = PETSC_FALSE, use_fluctuating_IC = PETSC_FALSE; 3012b730f8bSJeremy L Thompson CeedScalar u0 = 0.0, alpha = 1.01; 302ba6664aeSJames Wright CeedQFunctionContext stg_context; 303ba6664aeSJames Wright NewtonianIdealGasContext newtonian_ig_ctx; 304ba6664aeSJames Wright PetscFunctionBeginUser; 305ba6664aeSJames Wright 306ba6664aeSJames Wright // Get options 307ba6664aeSJames Wright PetscOptionsBegin(comm, NULL, "STG Boundary Condition Options", NULL); 3082b730f8bSJeremy L Thompson PetscCall(PetscOptionsString("-stg_inflow_path", "Path to STGInflow.dat", NULL, stg_inflow_path, stg_inflow_path, sizeof(stg_inflow_path), NULL)); 3092b730f8bSJeremy L Thompson PetscCall(PetscOptionsString("-stg_rand_path", "Path to STGInflow.dat", NULL, stg_rand_path, stg_rand_path, sizeof(stg_rand_path), NULL)); 3102b730f8bSJeremy L Thompson PetscCall(PetscOptionsReal("-stg_alpha", "Growth rate of the wavemodes", NULL, alpha, &alpha, NULL)); 3112b730f8bSJeremy L Thompson PetscCall(PetscOptionsReal("-stg_u0", "Advective velocity for the fluctuations", NULL, u0, &u0, NULL)); 3122b730f8bSJeremy L Thompson PetscCall(PetscOptionsBool("-stg_mean_only", "Only apply mean profile", NULL, mean_only, &mean_only, NULL)); 3132b730f8bSJeremy L Thompson PetscCall(PetscOptionsBool("-stg_strong", "Enforce STG inflow strongly", NULL, use_stgstrong, &use_stgstrong, NULL)); 3142b730f8bSJeremy L Thompson PetscCall(PetscOptionsBool("-stg_fluctuating_IC", "\"Extrude\" the fluctuations through the domain as an initial condition", NULL, 3152b730f8bSJeremy L Thompson use_fluctuating_IC, &use_fluctuating_IC, NULL)); 316ba6664aeSJames Wright PetscOptionsEnd(); 317ba6664aeSJames Wright 31824941a69SJames Wright PetscCall(PetscCalloc1(1, &global_stg_ctx)); 31965dd5cafSJames Wright global_stg_ctx->alpha = alpha; 32065dd5cafSJames Wright global_stg_ctx->u0 = u0; 32165dd5cafSJames Wright global_stg_ctx->is_implicit = user->phys->implicit; 32265dd5cafSJames Wright global_stg_ctx->prescribe_T = prescribe_T; 32365dd5cafSJames Wright global_stg_ctx->mean_only = mean_only; 32489060322SJames Wright global_stg_ctx->use_fluctuating_IC = use_fluctuating_IC; 32565dd5cafSJames Wright global_stg_ctx->theta0 = theta0; 32665dd5cafSJames Wright global_stg_ctx->P0 = P0; 32765dd5cafSJames Wright global_stg_ctx->nynodes = nynodes; 328ba6664aeSJames Wright 329ba6664aeSJames Wright { 330ba6664aeSJames Wright // Calculate dx assuming constant spacing 331ba6664aeSJames Wright PetscReal domain_min[3], domain_max[3], domain_size[3]; 33224941a69SJames Wright PetscCall(DMGetBoundingBox(dm, domain_min, domain_max)); 333ba6664aeSJames Wright for (PetscInt i = 0; i < 3; i++) domain_size[i] = domain_max[i] - domain_min[i]; 334ba6664aeSJames Wright 335ba6664aeSJames Wright PetscInt nmax = 3, faces[3]; 3362b730f8bSJeremy L Thompson PetscCall(PetscOptionsGetIntArray(NULL, NULL, "-dm_plex_box_faces", faces, &nmax, NULL)); 33765dd5cafSJames Wright global_stg_ctx->dx = domain_size[0] / faces[0]; 33865dd5cafSJames Wright global_stg_ctx->dz = domain_size[2] / faces[2]; 339ba6664aeSJames Wright } 340ba6664aeSJames Wright 3412b730f8bSJeremy L Thompson CeedQFunctionContextGetData(problem->apply_vol_rhs.qfunction_context, CEED_MEM_HOST, &newtonian_ig_ctx); 34265dd5cafSJames Wright global_stg_ctx->newtonian_ctx = *newtonian_ig_ctx; 3432b730f8bSJeremy L Thompson CeedQFunctionContextRestoreData(problem->apply_vol_rhs.qfunction_context, &newtonian_ig_ctx); 344ba6664aeSJames Wright 3452b730f8bSJeremy L Thompson PetscCall(GetSTGContextData(comm, dm, stg_inflow_path, stg_rand_path, &global_stg_ctx, ynodes)); 346ba6664aeSJames Wright 347ba6664aeSJames Wright CeedQFunctionContextCreate(user->ceed, &stg_context); 3482b730f8bSJeremy L Thompson CeedQFunctionContextSetData(stg_context, CEED_MEM_HOST, CEED_USE_POINTER, global_stg_ctx->total_bytes, global_stg_ctx); 3492b730f8bSJeremy L Thompson CeedQFunctionContextSetDataDestroy(stg_context, CEED_MEM_HOST, FreeContextPetsc); 3502b730f8bSJeremy L Thompson CeedQFunctionContextRegisterDouble(stg_context, "solution time", offsetof(struct STGShur14Context_, time), 1, "Physical time of the solution"); 351ba6664aeSJames Wright 352b77c53c9SJames Wright CeedQFunctionContextDestroy(&problem->ics.qfunction_context); 353b77c53c9SJames Wright problem->ics.qfunction = ICsSTG; 354b77c53c9SJames Wright problem->ics.qfunction_loc = ICsSTG_loc; 355b77c53c9SJames Wright problem->ics.qfunction_context = stg_context; 356b77c53c9SJames Wright 3574e139266SJames Wright if (use_stgstrong) { 35865dd5cafSJames Wright // Use default boundary integral QF (BoundaryIntegral) in newtonian.h 359dada6cc0SJames Wright problem->use_dirichlet_ceed = PETSC_TRUE; 36036b31e27SJames Wright problem->bc_from_ics = PETSC_FALSE; 3614e139266SJames Wright } else { 362ba6664aeSJames Wright problem->apply_inflow.qfunction = STGShur14_Inflow; 363ba6664aeSJames Wright problem->apply_inflow.qfunction_loc = STGShur14_Inflow_loc; 3644dbab5e5SJames Wright problem->apply_inflow_jacobian.qfunction = STGShur14_Inflow_Jacobian; 3654dbab5e5SJames Wright problem->apply_inflow_jacobian.qfunction_loc = STGShur14_Inflow_Jacobian_loc; 3662b730f8bSJeremy L Thompson CeedQFunctionContextReferenceCopy(stg_context, &problem->apply_inflow.qfunction_context); 3672b730f8bSJeremy L Thompson CeedQFunctionContextReferenceCopy(stg_context, &problem->apply_inflow_jacobian.qfunction_context); 36836b31e27SJames Wright problem->bc_from_ics = PETSC_TRUE; 3694e139266SJames Wright } 370ba6664aeSJames Wright 371ba6664aeSJames Wright PetscFunctionReturn(0); 372ba6664aeSJames Wright } 3734e139266SJames Wright 3742b730f8bSJeremy L Thompson static inline PetscScalar FindDy(const PetscScalar ynodes[], const PetscInt nynodes, const PetscScalar y) { 3754e139266SJames Wright const PetscScalar half_mindy = 0.5 * (ynodes[1] - ynodes[0]); 3764e139266SJames Wright // ^^assuming min(dy) is first element off the wall 3774e139266SJames Wright PetscInt idx = -1; // Index 3784e139266SJames Wright 3794e139266SJames Wright for (PetscInt i = 0; i < nynodes; i++) { 3804e139266SJames Wright if (y < ynodes[i] + half_mindy) { 3812b730f8bSJeremy L Thompson idx = i; 3822b730f8bSJeremy L Thompson break; 3834e139266SJames Wright } 3844e139266SJames Wright } 3854e139266SJames Wright if (idx == 0) return ynodes[1] - ynodes[0]; 3864e139266SJames Wright else if (idx == nynodes - 1) return ynodes[nynodes - 2] - ynodes[nynodes - 1]; 3874e139266SJames Wright else return 0.5 * (ynodes[idx + 1] - ynodes[idx - 1]); 3884e139266SJames Wright } 3894e139266SJames Wright 3904e139266SJames Wright // Function passed to DMAddBoundary 391dada6cc0SJames Wright // NOTE: Not used in favor of QFunction-based method 3922b730f8bSJeremy L Thompson PetscErrorCode StrongSTGbcFunc(PetscInt dim, PetscReal time, const PetscReal x[], PetscInt Nc, PetscScalar bcval[], void *ctx) { 3934e139266SJames Wright PetscFunctionBeginUser; 3942b730f8bSJeremy L Thompson 3954e139266SJames Wright const STGShur14Context stg_ctx = (STGShur14Context)ctx; 3964e139266SJames Wright PetscScalar qn[stg_ctx->nmodes], u[3], ubar[3], cij[6], eps, lt; 3974e139266SJames Wright const bool mean_only = stg_ctx->mean_only; 3984e139266SJames Wright const PetscScalar dx = stg_ctx->dx; 3994e139266SJames Wright const PetscScalar dz = stg_ctx->dz; 4004e139266SJames Wright const PetscScalar mu = stg_ctx->newtonian_ctx.mu; 4014e139266SJames Wright const PetscScalar theta0 = stg_ctx->theta0; 4024e139266SJames Wright const PetscScalar P0 = stg_ctx->P0; 4034e139266SJames Wright const PetscScalar cv = stg_ctx->newtonian_ctx.cv; 4044e139266SJames Wright const PetscScalar cp = stg_ctx->newtonian_ctx.cp; 4054e139266SJames Wright const PetscScalar Rd = cp - cv; 4064e139266SJames Wright 4074e139266SJames Wright const CeedScalar rho = P0 / (Rd * theta0); 4084e139266SJames Wright InterpolateProfile(x[1], ubar, cij, &eps, <, stg_ctx); 4094e139266SJames Wright if (!mean_only) { 4104e139266SJames Wright const PetscInt nynodes = stg_ctx->nynodes; 4114e139266SJames Wright const PetscScalar *ynodes = &stg_ctx->data[stg_ctx->offsets.ynodes]; 4124e139266SJames Wright const PetscScalar h[3] = {dx, FindDy(ynodes, nynodes, x[1]), dz}; 4134e139266SJames Wright CalcSpectrum(x[1], eps, lt, h, mu / rho, qn, stg_ctx); 4144e139266SJames Wright STGShur14_Calc(x, time, ubar, cij, qn, u, stg_ctx); 4154e139266SJames Wright } else { 4164e139266SJames Wright for (CeedInt j = 0; j < 3; j++) u[j] = ubar[j]; 4174e139266SJames Wright } 4184e139266SJames Wright 4194e139266SJames Wright bcval[0] = rho; 4204e139266SJames Wright bcval[1] = rho * u[0]; 4214e139266SJames Wright bcval[2] = rho * u[1]; 4224e139266SJames Wright bcval[3] = rho * u[2]; 4234e139266SJames Wright PetscFunctionReturn(0); 4244e139266SJames Wright } 4254e139266SJames Wright 4262b730f8bSJeremy L Thompson PetscErrorCode SetupStrongSTG(DM dm, SimpleBC bc, ProblemData *problem, Physics phys) { 4274e139266SJames Wright DMLabel label; 4284e139266SJames Wright PetscFunctionBeginUser; 4294e139266SJames Wright 430192a7459SJames Wright PetscInt comps[5], num_comps = 4; 43197baf651SJames Wright switch (phys->state_var) { 43297baf651SJames Wright case STATEVAR_CONSERVATIVE: 433192a7459SJames Wright // {0,1,2,3} for rho, rho*u, rho*v, rho*w 434192a7459SJames Wright for (int i = 0; i < 4; i++) comps[i] = i; 43597baf651SJames Wright break; 43697baf651SJames Wright 43797baf651SJames Wright case STATEVAR_PRIMITIVE: 43897baf651SJames Wright // {1,2,3,4} for u, v, w, T 43997baf651SJames Wright for (int i = 0; i < 4; i++) comps[i] = i + 1; 44097baf651SJames Wright break; 441192a7459SJames Wright } 442192a7459SJames Wright 44324941a69SJames Wright PetscCall(DMGetLabel(dm, "Face Sets", &label)); 4444e139266SJames Wright // Set wall BCs 4454e139266SJames Wright if (bc->num_inflow > 0) { 4462b730f8bSJeremy L Thompson PetscCall(DMAddBoundary(dm, DM_BC_ESSENTIAL, "STG", label, bc->num_inflow, bc->inflows, 0, num_comps, comps, (void (*)(void))StrongSTGbcFunc, 44724941a69SJames Wright NULL, global_stg_ctx, NULL)); 4484e139266SJames Wright } 4494e139266SJames Wright 4504e139266SJames Wright PetscFunctionReturn(0); 4514e139266SJames Wright } 452dada6cc0SJames Wright 4532b730f8bSJeremy L Thompson PetscErrorCode SetupStrongSTG_QF(Ceed ceed, ProblemData *problem, CeedInt num_comp_x, CeedInt num_comp_q, CeedInt stg_data_size, 4545dc40723SJames Wright CeedInt q_data_size_sur, CeedQFunction *pqf_strongbc) { 455dada6cc0SJames Wright CeedQFunction qf_strongbc; 456dada6cc0SJames Wright PetscFunctionBeginUser; 4572b730f8bSJeremy L Thompson CeedQFunctionCreateInterior(ceed, 1, STGShur14_Inflow_StrongQF, STGShur14_Inflow_StrongQF_loc, &qf_strongbc); 4582b730f8bSJeremy L Thompson CeedQFunctionAddInput(qf_strongbc, "surface qdata", q_data_size_sur, CEED_EVAL_NONE); 459dada6cc0SJames Wright CeedQFunctionAddInput(qf_strongbc, "x", num_comp_x, CEED_EVAL_NONE); 460dada6cc0SJames Wright CeedQFunctionAddInput(qf_strongbc, "scale", 1, CEED_EVAL_NONE); 4615dc40723SJames Wright CeedQFunctionAddInput(qf_strongbc, "stg data", stg_data_size, CEED_EVAL_NONE); 462dada6cc0SJames Wright CeedQFunctionAddOutput(qf_strongbc, "q", num_comp_q, CEED_EVAL_NONE); 463dada6cc0SJames Wright 464dada6cc0SJames Wright CeedQFunctionSetContext(qf_strongbc, problem->ics.qfunction_context); 465dada6cc0SJames Wright *pqf_strongbc = qf_strongbc; 466dada6cc0SJames Wright PetscFunctionReturn(0); 467dada6cc0SJames Wright } 4685dc40723SJames Wright 4692b730f8bSJeremy L Thompson PetscErrorCode SetupStrongSTG_PreProcessing(Ceed ceed, ProblemData *problem, CeedInt num_comp_x, CeedInt stg_data_size, CeedInt q_data_size_sur, 4705dc40723SJames Wright CeedQFunction *pqf_strongbc) { 4715dc40723SJames Wright CeedQFunction qf_strongbc; 4725dc40723SJames Wright PetscFunctionBeginUser; 4732b730f8bSJeremy L Thompson CeedQFunctionCreateInterior(ceed, 1, Preprocess_STGShur14, Preprocess_STGShur14_loc, &qf_strongbc); 4742b730f8bSJeremy L Thompson CeedQFunctionAddInput(qf_strongbc, "surface qdata", q_data_size_sur, CEED_EVAL_NONE); 4755dc40723SJames Wright CeedQFunctionAddInput(qf_strongbc, "x", num_comp_x, CEED_EVAL_NONE); 4765dc40723SJames Wright CeedQFunctionAddOutput(qf_strongbc, "stg data", stg_data_size, CEED_EVAL_NONE); 4775dc40723SJames Wright 4785dc40723SJames Wright CeedQFunctionSetContext(qf_strongbc, problem->ics.qfunction_context); 4795dc40723SJames Wright *pqf_strongbc = qf_strongbc; 4805dc40723SJames Wright PetscFunctionReturn(0); 4815dc40723SJames Wright } 482