xref: /libCEED/examples/fluids/src/setuplibceed.c (revision 0ec2498e4647a31a3ca4d4cab343044544c0b30c)
13d8e8822SJeremy L Thompson // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors.
23d8e8822SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details.
377841947SLeila Ghaffari //
43d8e8822SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause
577841947SLeila Ghaffari //
63d8e8822SJeremy L Thompson // This file is part of CEED:  http://github.com/ceed
777841947SLeila Ghaffari 
877841947SLeila Ghaffari /// @file
977841947SLeila Ghaffari /// Setup libCEED for Navier-Stokes example using PETSc
1077841947SLeila Ghaffari 
1177841947SLeila Ghaffari #include "../navierstokes.h"
1277841947SLeila Ghaffari 
1377841947SLeila Ghaffari // Utility function - essential BC dofs are encoded in closure indices as -(i+1).
1477841947SLeila Ghaffari PetscInt Involute(PetscInt i) {
1577841947SLeila Ghaffari   return i >= 0 ? i : -(i+1);
1677841947SLeila Ghaffari }
1777841947SLeila Ghaffari 
1877841947SLeila Ghaffari // Utility function to create local CEED restriction
197ed3e4cdSJeremy L Thompson PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height,
207ed3e4cdSJeremy L Thompson     DMLabel domain_label, CeedInt value, CeedElemRestriction *elem_restr) {
217ed3e4cdSJeremy L Thompson   PetscInt num_elem, elem_size, num_dof, num_comp, *elem_restr_offsets;
2277841947SLeila Ghaffari   PetscErrorCode ierr;
237ed3e4cdSJeremy L Thompson 
2477841947SLeila Ghaffari   PetscFunctionBeginUser;
257ed3e4cdSJeremy L Thompson   ierr = DMPlexGetLocalOffsets(dm, domain_label, value, height, 0, &num_elem,
267ed3e4cdSJeremy L Thompson                                &elem_size, &num_comp, &num_dof, &elem_restr_offsets);
277ed3e4cdSJeremy L Thompson   CHKERRQ(ierr);
2877841947SLeila Ghaffari 
297ed3e4cdSJeremy L Thompson   CeedElemRestrictionCreate(ceed, num_elem, elem_size, num_comp,
307ed3e4cdSJeremy L Thompson                             1, num_dof, CEED_MEM_HOST, CEED_COPY_VALUES,
317ed3e4cdSJeremy L Thompson                             elem_restr_offsets, elem_restr);
327ed3e4cdSJeremy L Thompson   ierr = PetscFree(elem_restr_offsets); CHKERRQ(ierr);
3377841947SLeila Ghaffari 
3477841947SLeila Ghaffari   PetscFunctionReturn(0);
3577841947SLeila Ghaffari }
3677841947SLeila Ghaffari 
3777841947SLeila Ghaffari // Utility function to get Ceed Restriction for each domain
3877841947SLeila Ghaffari PetscErrorCode GetRestrictionForDomain(Ceed ceed, DM dm, CeedInt height,
3977841947SLeila Ghaffari                                        DMLabel domain_label, PetscInt value,
407ed3e4cdSJeremy L Thompson                                        CeedInt Q, CeedInt q_data_size,
4177841947SLeila Ghaffari                                        CeedElemRestriction *elem_restr_q,
4277841947SLeila Ghaffari                                        CeedElemRestriction *elem_restr_x,
4377841947SLeila Ghaffari                                        CeedElemRestriction *elem_restr_qd_i) {
4477841947SLeila Ghaffari   DM             dm_coord;
4577841947SLeila Ghaffari   CeedInt        dim, loc_num_elem;
4677841947SLeila Ghaffari   CeedInt        Q_dim;
472534dcc8SJed Brown   CeedElemRestriction elem_restr_tmp;
4877841947SLeila Ghaffari   PetscErrorCode ierr;
4977841947SLeila Ghaffari   PetscFunctionBeginUser;
5077841947SLeila Ghaffari 
5177841947SLeila Ghaffari   ierr = DMGetDimension(dm, &dim); CHKERRQ(ierr);
5277841947SLeila Ghaffari   dim -= height;
5377841947SLeila Ghaffari   Q_dim = CeedIntPow(Q, dim);
542534dcc8SJed Brown   ierr = CreateRestrictionFromPlex(ceed, dm, height, domain_label, value,
552534dcc8SJed Brown                                    &elem_restr_tmp);
562534dcc8SJed Brown   CHKERRQ(ierr);
572534dcc8SJed Brown   if (elem_restr_q) *elem_restr_q = elem_restr_tmp;
582534dcc8SJed Brown   if (elem_restr_x) {
5977841947SLeila Ghaffari     ierr = DMGetCoordinateDM(dm, &dm_coord); CHKERRQ(ierr);
6077841947SLeila Ghaffari     ierr = DMPlexSetClosurePermutationTensor(dm_coord, PETSC_DETERMINE, NULL);
6177841947SLeila Ghaffari     CHKERRQ(ierr);
627ed3e4cdSJeremy L Thompson     ierr = CreateRestrictionFromPlex(ceed, dm_coord, height, domain_label, value,
637ed3e4cdSJeremy L Thompson                                      elem_restr_x);
647ed3e4cdSJeremy L Thompson     CHKERRQ(ierr);
652534dcc8SJed Brown   }
662534dcc8SJed Brown   if (elem_restr_qd_i) {
672534dcc8SJed Brown     CeedElemRestrictionGetNumElements(elem_restr_tmp, &loc_num_elem);
6877841947SLeila Ghaffari     CeedElemRestrictionCreateStrided(ceed, loc_num_elem, Q_dim,
6977841947SLeila Ghaffari                                      q_data_size, q_data_size*loc_num_elem*Q_dim,
7077841947SLeila Ghaffari                                      CEED_STRIDES_BACKEND, elem_restr_qd_i);
712534dcc8SJed Brown   }
722534dcc8SJed Brown   if (!elem_restr_q) CeedElemRestrictionDestroy(&elem_restr_tmp);
7377841947SLeila Ghaffari   PetscFunctionReturn(0);
7477841947SLeila Ghaffari }
7577841947SLeila Ghaffari 
7677841947SLeila Ghaffari // Utility function to create CEED Composite Operator for the entire domain
7777841947SLeila Ghaffari PetscErrorCode CreateOperatorForDomain(Ceed ceed, DM dm, SimpleBC bc,
7877841947SLeila Ghaffari                                        CeedData ceed_data, Physics phys,
79e334ad8fSJed Brown                                        CeedOperator op_apply_vol,
80e334ad8fSJed Brown                                        CeedOperator op_apply_ijacobian_vol,
81e334ad8fSJed Brown                                        CeedInt height,
82e334ad8fSJed Brown                                        CeedInt P_sur, CeedInt Q_sur,
83e334ad8fSJed Brown                                        CeedInt q_data_size_sur, CeedInt jac_data_size_sur,
84e334ad8fSJed Brown                                        CeedOperator *op_apply, CeedOperator *op_apply_ijacobian) {
8577841947SLeila Ghaffari   DMLabel        domain_label;
8677841947SLeila Ghaffari   PetscErrorCode ierr;
8777841947SLeila Ghaffari   PetscFunctionBeginUser;
8877841947SLeila Ghaffari 
8977841947SLeila Ghaffari   // Create Composite Operaters
9077841947SLeila Ghaffari   CeedCompositeOperatorCreate(ceed, op_apply);
91e334ad8fSJed Brown   if (op_apply_ijacobian)
92e334ad8fSJed Brown     CeedCompositeOperatorCreate(ceed, op_apply_ijacobian);
9377841947SLeila Ghaffari 
9477841947SLeila Ghaffari   // --Apply Sub-Operator for the volume
9577841947SLeila Ghaffari   CeedCompositeOperatorAddSub(*op_apply, op_apply_vol);
96e334ad8fSJed Brown   if (op_apply_ijacobian)
97e334ad8fSJed Brown     CeedCompositeOperatorAddSub(*op_apply_ijacobian, op_apply_ijacobian_vol);
9877841947SLeila Ghaffari 
9977841947SLeila Ghaffari   // -- Create Sub-Operator for in/outflow BCs
10088626eedSJames Wright   if (phys->has_neumann || 1) {
10177841947SLeila Ghaffari     // --- Setup
10277841947SLeila Ghaffari     ierr = DMGetLabel(dm, "Face Sets", &domain_label); CHKERRQ(ierr);
10377841947SLeila Ghaffari 
10477841947SLeila Ghaffari     // --- Get number of quadrature points for the boundaries
10577841947SLeila Ghaffari     CeedInt num_qpts_sur;
10677841947SLeila Ghaffari     CeedBasisGetNumQuadraturePoints(ceed_data->basis_q_sur, &num_qpts_sur);
10777841947SLeila Ghaffari 
1082fe7aee7SLeila Ghaffari     // --- Create Sub-Operator for inflow boundaries
1092fe7aee7SLeila Ghaffari     for (CeedInt i=0; i < bc->num_inflow; i++) {
11077841947SLeila Ghaffari       CeedVector          q_data_sur;
111e334ad8fSJed Brown       CeedOperator        op_setup_sur, op_apply_inflow,
112e334ad8fSJed Brown                           op_apply_inflow_jacobian = NULL;
1132fe7aee7SLeila Ghaffari       CeedElemRestriction elem_restr_x_sur, elem_restr_q_sur, elem_restr_qd_i_sur;
11477841947SLeila Ghaffari 
11577841947SLeila Ghaffari       // ---- CEED Restriction
1162fe7aee7SLeila Ghaffari       ierr = GetRestrictionForDomain(ceed, dm, height, domain_label, bc->inflows[i],
1172fe7aee7SLeila Ghaffari                                      Q_sur, q_data_size_sur, &elem_restr_q_sur, &elem_restr_x_sur,
1182fe7aee7SLeila Ghaffari                                      &elem_restr_qd_i_sur);
11977841947SLeila Ghaffari       CHKERRQ(ierr);
12077841947SLeila Ghaffari 
12177841947SLeila Ghaffari       // ---- CEED Vector
12277841947SLeila Ghaffari       PetscInt loc_num_elem_sur;
12377841947SLeila Ghaffari       CeedElemRestrictionGetNumElements(elem_restr_q_sur, &loc_num_elem_sur);
12477841947SLeila Ghaffari       CeedVectorCreate(ceed, q_data_size_sur*loc_num_elem_sur*num_qpts_sur,
12577841947SLeila Ghaffari                        &q_data_sur);
12677841947SLeila Ghaffari 
12777841947SLeila Ghaffari       // ---- CEED Operator
12877841947SLeila Ghaffari       // ----- CEED Operator for Setup (geometric factors)
12977841947SLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_setup_sur, NULL, NULL, &op_setup_sur);
13077841947SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "dx", elem_restr_x_sur,
131e6225c47SLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_ACTIVE);
13277841947SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "weight", CEED_ELEMRESTRICTION_NONE,
13377841947SLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_NONE);
134a61c78d6SJeremy L Thompson       CeedOperatorSetField(op_setup_sur, "surface qdata", elem_restr_qd_i_sur,
13577841947SLeila Ghaffari                            CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
13677841947SLeila Ghaffari 
13777841947SLeila Ghaffari       // ----- CEED Operator for Physics
1382fe7aee7SLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_apply_inflow, NULL, NULL,
1392fe7aee7SLeila Ghaffari                          &op_apply_inflow);
1402fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "q", elem_restr_q_sur,
14177841947SLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
142e8b03feeSJames Wright       CeedOperatorSetField(op_apply_inflow, "Grad_q", elem_restr_q_sur,
143e8b03feeSJames Wright                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
1442fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "surface qdata", elem_restr_qd_i_sur,
14577841947SLeila Ghaffari                            CEED_BASIS_COLLOCATED, q_data_sur);
1462fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "x", elem_restr_x_sur,
14777841947SLeila Ghaffari                            ceed_data->basis_x_sur, ceed_data->x_coord);
1482fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "v", elem_restr_q_sur,
14977841947SLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
15077841947SLeila Ghaffari 
151e334ad8fSJed Brown       if (ceed_data->qf_apply_inflow_jacobian) {
152e334ad8fSJed Brown         CeedOperatorCreate(ceed, ceed_data->qf_apply_inflow_jacobian, NULL, NULL,
153e334ad8fSJed Brown                            &op_apply_inflow_jacobian);
154e334ad8fSJed Brown         CeedOperatorSetField(op_apply_inflow_jacobian, "dq", elem_restr_q_sur,
155e334ad8fSJed Brown                              ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
156e334ad8fSJed Brown         CeedOperatorSetField(op_apply_inflow_jacobian, "surface qdata",
157e334ad8fSJed Brown                              elem_restr_qd_i_sur,
158e334ad8fSJed Brown                              CEED_BASIS_COLLOCATED, q_data_sur);
159e334ad8fSJed Brown         CeedOperatorSetField(op_apply_inflow_jacobian, "x", elem_restr_x_sur,
160e334ad8fSJed Brown                              ceed_data->basis_x_sur, ceed_data->x_coord);
161e334ad8fSJed Brown         CeedOperatorSetField(op_apply_inflow_jacobian, "v", elem_restr_q_sur,
162e334ad8fSJed Brown                              ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
163e334ad8fSJed Brown       }
164e334ad8fSJed Brown 
16577841947SLeila Ghaffari       // ----- Apply CEED operator for Setup
16677841947SLeila Ghaffari       CeedOperatorApply(op_setup_sur, ceed_data->x_coord, q_data_sur,
16777841947SLeila Ghaffari                         CEED_REQUEST_IMMEDIATE);
16877841947SLeila Ghaffari 
1692fe7aee7SLeila Ghaffari       // ----- Apply Sub-Operator for Physics
1702fe7aee7SLeila Ghaffari       CeedCompositeOperatorAddSub(*op_apply, op_apply_inflow);
171e334ad8fSJed Brown       if (op_apply_ijacobian)
172e334ad8fSJed Brown         CeedCompositeOperatorAddSub(*op_apply_ijacobian, op_apply_inflow_jacobian);
17377841947SLeila Ghaffari 
17477841947SLeila Ghaffari       // ----- Cleanup
17577841947SLeila Ghaffari       CeedVectorDestroy(&q_data_sur);
17677841947SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_q_sur);
17777841947SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_x_sur);
17877841947SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_qd_i_sur);
17977841947SLeila Ghaffari       CeedOperatorDestroy(&op_setup_sur);
1802fe7aee7SLeila Ghaffari       CeedOperatorDestroy(&op_apply_inflow);
181e334ad8fSJed Brown       CeedOperatorDestroy(&op_apply_inflow_jacobian);
18277841947SLeila Ghaffari     }
18377841947SLeila Ghaffari 
1842fe7aee7SLeila Ghaffari     // --- Create Sub-Operator for outflow boundaries
1852fe7aee7SLeila Ghaffari     for (CeedInt i=0; i < bc->num_outflow; i++) {
186e334ad8fSJed Brown       CeedVector          q_data_sur, jac_data_sur;
187e334ad8fSJed Brown       CeedOperator        op_setup_sur, op_apply_outflow,
188e334ad8fSJed Brown                           op_apply_outflow_jacobian = NULL;
189e334ad8fSJed Brown       CeedElemRestriction elem_restr_x_sur, elem_restr_q_sur, elem_restr_qd_i_sur,
190e334ad8fSJed Brown                           elem_restr_jd_i_sur;
1912fe7aee7SLeila Ghaffari 
1922fe7aee7SLeila Ghaffari       // ---- CEED Restriction
1932fe7aee7SLeila Ghaffari       ierr = GetRestrictionForDomain(ceed, dm, height, domain_label, bc->outflows[i],
1942fe7aee7SLeila Ghaffari                                      Q_sur, q_data_size_sur, &elem_restr_q_sur, &elem_restr_x_sur,
1952fe7aee7SLeila Ghaffari                                      &elem_restr_qd_i_sur);
1962fe7aee7SLeila Ghaffari       CHKERRQ(ierr);
19739c69132SJed Brown       if (jac_data_size_sur > 0) {
19839c69132SJed Brown         // State-dependent data will be passed from residual to Jacobian. This will be collocated.
199e334ad8fSJed Brown         ierr = GetRestrictionForDomain(ceed, dm, height, domain_label, bc->outflows[i],
200e334ad8fSJed Brown                                        Q_sur, jac_data_size_sur, NULL, NULL,
201e334ad8fSJed Brown                                        &elem_restr_jd_i_sur);
202e334ad8fSJed Brown         CHKERRQ(ierr);
20339c69132SJed Brown         CeedElemRestrictionCreateVector(elem_restr_jd_i_sur, &jac_data_sur, NULL);
20439c69132SJed Brown       } else {
20539c69132SJed Brown         elem_restr_jd_i_sur = NULL;
20639c69132SJed Brown         jac_data_sur = NULL;
20739c69132SJed Brown       }
2082fe7aee7SLeila Ghaffari 
2092fe7aee7SLeila Ghaffari       // ---- CEED Vector
2102fe7aee7SLeila Ghaffari       PetscInt loc_num_elem_sur;
2112fe7aee7SLeila Ghaffari       CeedElemRestrictionGetNumElements(elem_restr_q_sur, &loc_num_elem_sur);
2122fe7aee7SLeila Ghaffari       CeedVectorCreate(ceed, q_data_size_sur*loc_num_elem_sur*num_qpts_sur,
2132fe7aee7SLeila Ghaffari                        &q_data_sur);
2142fe7aee7SLeila Ghaffari 
2152fe7aee7SLeila Ghaffari       // ---- CEED Operator
2162fe7aee7SLeila Ghaffari       // ----- CEED Operator for Setup (geometric factors)
2172fe7aee7SLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_setup_sur, NULL, NULL, &op_setup_sur);
2182fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "dx", elem_restr_x_sur,
2192fe7aee7SLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_ACTIVE);
2202fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "weight", CEED_ELEMRESTRICTION_NONE,
2212fe7aee7SLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_NONE);
2222fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "surface qdata", elem_restr_qd_i_sur,
2232fe7aee7SLeila Ghaffari                            CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
2242fe7aee7SLeila Ghaffari 
2252fe7aee7SLeila Ghaffari       // ----- CEED Operator for Physics
2262fe7aee7SLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_apply_outflow, NULL, NULL,
2272fe7aee7SLeila Ghaffari                          &op_apply_outflow);
2282fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "q", elem_restr_q_sur,
2292fe7aee7SLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
230e8b03feeSJames Wright       CeedOperatorSetField(op_apply_outflow, "Grad_q", elem_restr_q_sur,
231e8b03feeSJames Wright                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
2322fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "surface qdata", elem_restr_qd_i_sur,
2332fe7aee7SLeila Ghaffari                            CEED_BASIS_COLLOCATED, q_data_sur);
2342fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "x", elem_restr_x_sur,
2352fe7aee7SLeila Ghaffari                            ceed_data->basis_x_sur, ceed_data->x_coord);
2362fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "v", elem_restr_q_sur,
2372fe7aee7SLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
23839c69132SJed Brown       if (elem_restr_jd_i_sur)
239e334ad8fSJed Brown         CeedOperatorSetField(op_apply_outflow, "surface jacobian data",
240e334ad8fSJed Brown                              elem_restr_jd_i_sur,
241e334ad8fSJed Brown                              CEED_BASIS_COLLOCATED, jac_data_sur);
242e334ad8fSJed Brown 
243e334ad8fSJed Brown       if (ceed_data->qf_apply_outflow_jacobian) {
244e334ad8fSJed Brown         CeedOperatorCreate(ceed, ceed_data->qf_apply_outflow_jacobian, NULL, NULL,
245e334ad8fSJed Brown                            &op_apply_outflow_jacobian);
246e334ad8fSJed Brown         CeedOperatorSetField(op_apply_outflow_jacobian, "dq", elem_restr_q_sur,
247e334ad8fSJed Brown                              ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
248*0ec2498eSJames Wright         CeedOperatorSetField(op_apply_outflow_jacobian, "Grad_dq", elem_restr_q_sur,
249*0ec2498eSJames Wright                              ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
250e334ad8fSJed Brown         CeedOperatorSetField(op_apply_outflow_jacobian, "surface qdata",
251e334ad8fSJed Brown                              elem_restr_qd_i_sur,
252e334ad8fSJed Brown                              CEED_BASIS_COLLOCATED, q_data_sur);
253*0ec2498eSJames Wright         CeedOperatorSetField(op_apply_outflow_jacobian, "x", elem_restr_x_sur,
254*0ec2498eSJames Wright                              ceed_data->basis_x_sur, ceed_data->x_coord);
255e334ad8fSJed Brown         CeedOperatorSetField(op_apply_outflow_jacobian, "surface jacobian data",
256e334ad8fSJed Brown                              elem_restr_jd_i_sur,
257e334ad8fSJed Brown                              CEED_BASIS_COLLOCATED, jac_data_sur);
258e334ad8fSJed Brown         CeedOperatorSetField(op_apply_outflow_jacobian, "v", elem_restr_q_sur,
259e334ad8fSJed Brown                              ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
260e334ad8fSJed Brown       }
2612fe7aee7SLeila Ghaffari 
2622fe7aee7SLeila Ghaffari       // ----- Apply CEED operator for Setup
2632fe7aee7SLeila Ghaffari       CeedOperatorApply(op_setup_sur, ceed_data->x_coord, q_data_sur,
2642fe7aee7SLeila Ghaffari                         CEED_REQUEST_IMMEDIATE);
2652fe7aee7SLeila Ghaffari 
2662fe7aee7SLeila Ghaffari       // ----- Apply Sub-Operator for Physics
2672fe7aee7SLeila Ghaffari       CeedCompositeOperatorAddSub(*op_apply, op_apply_outflow);
268e334ad8fSJed Brown       if (op_apply_ijacobian)
269e334ad8fSJed Brown         CeedCompositeOperatorAddSub(*op_apply_ijacobian, op_apply_outflow_jacobian);
2702fe7aee7SLeila Ghaffari 
2712fe7aee7SLeila Ghaffari       // ----- Cleanup
2722fe7aee7SLeila Ghaffari       CeedVectorDestroy(&q_data_sur);
273e334ad8fSJed Brown       CeedVectorDestroy(&jac_data_sur);
2742fe7aee7SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_q_sur);
2752fe7aee7SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_x_sur);
2762fe7aee7SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_qd_i_sur);
277e334ad8fSJed Brown       CeedElemRestrictionDestroy(&elem_restr_jd_i_sur);
2782fe7aee7SLeila Ghaffari       CeedOperatorDestroy(&op_setup_sur);
2792fe7aee7SLeila Ghaffari       CeedOperatorDestroy(&op_apply_outflow);
280e334ad8fSJed Brown       CeedOperatorDestroy(&op_apply_outflow_jacobian);
2812fe7aee7SLeila Ghaffari     }
2822fe7aee7SLeila Ghaffari   }
28311436a05SJames Wright 
28411436a05SJames Wright   // ----- Get Context Labels for Operator
28511436a05SJames Wright   CeedOperatorContextGetFieldLabel(*op_apply, "solution time",
28611436a05SJames Wright                                    &phys->solution_time_label);
28788626eedSJames Wright   CeedOperatorContextGetFieldLabel(*op_apply, "timestep size",
28888626eedSJames Wright                                    &phys->timestep_size_label);
28911436a05SJames Wright 
29077841947SLeila Ghaffari   PetscFunctionReturn(0);
29177841947SLeila Ghaffari }
29277841947SLeila Ghaffari 
29377841947SLeila Ghaffari PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user,
294c95f9967SJed Brown                             AppCtx app_ctx, ProblemData *problem, SimpleBC bc) {
29577841947SLeila Ghaffari   PetscErrorCode ierr;
29677841947SLeila Ghaffari   PetscFunctionBeginUser;
29777841947SLeila Ghaffari 
29877841947SLeila Ghaffari   // *****************************************************************************
29977841947SLeila Ghaffari   // Set up CEED objects for the interior domain (volume)
30077841947SLeila Ghaffari   // *****************************************************************************
30177841947SLeila Ghaffari   const PetscInt num_comp_q      = 5;
30277841947SLeila Ghaffari   const CeedInt  dim             = problem->dim,
30377841947SLeila Ghaffari                  num_comp_x      = problem->dim,
30477841947SLeila Ghaffari                  q_data_size_vol = problem->q_data_size_vol,
305e334ad8fSJed Brown                  jac_data_size_vol = num_comp_q + 6 + 3,
30677841947SLeila Ghaffari                  P               = app_ctx->degree + 1,
30777841947SLeila Ghaffari                  Q               = P + app_ctx->q_extra;
308a3ae0734SJed Brown   CeedElemRestriction elem_restr_jd_i;
309a3ae0734SJed Brown   CeedVector jac_data;
31077841947SLeila Ghaffari 
31177841947SLeila Ghaffari   // -----------------------------------------------------------------------------
31277841947SLeila Ghaffari   // CEED Bases
31377841947SLeila Ghaffari   // -----------------------------------------------------------------------------
31477841947SLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_q, P, Q, CEED_GAUSS,
31577841947SLeila Ghaffari                                   &ceed_data->basis_q);
31677841947SLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_x, 2, Q, CEED_GAUSS,
31777841947SLeila Ghaffari                                   &ceed_data->basis_x);
31877841947SLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_x, 2, P,
31977841947SLeila Ghaffari                                   CEED_GAUSS_LOBATTO, &ceed_data->basis_xc);
32077841947SLeila Ghaffari 
32177841947SLeila Ghaffari   // -----------------------------------------------------------------------------
32277841947SLeila Ghaffari   // CEED Restrictions
32377841947SLeila Ghaffari   // -----------------------------------------------------------------------------
32477841947SLeila Ghaffari   // -- Create restriction
3257ed3e4cdSJeremy L Thompson   ierr = GetRestrictionForDomain(ceed, dm, 0, 0, 0, Q, q_data_size_vol,
3267ed3e4cdSJeremy L Thompson                                  &ceed_data->elem_restr_q, &ceed_data->elem_restr_x,
32777841947SLeila Ghaffari                                  &ceed_data->elem_restr_qd_i); CHKERRQ(ierr);
328a3ae0734SJed Brown 
329a3ae0734SJed Brown   ierr = GetRestrictionForDomain(ceed, dm, 0, 0, 0, Q, jac_data_size_vol,
330a3ae0734SJed Brown                                  NULL, NULL,
331a3ae0734SJed Brown                                  &elem_restr_jd_i); CHKERRQ(ierr);
33277841947SLeila Ghaffari // -- Create E vectors
33377841947SLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->q_ceed, NULL);
33477841947SLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->q_dot_ceed,
33577841947SLeila Ghaffari                                   NULL);
33677841947SLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->g_ceed, NULL);
33777841947SLeila Ghaffari 
33877841947SLeila Ghaffari   // -----------------------------------------------------------------------------
33977841947SLeila Ghaffari   // CEED QFunctions
34077841947SLeila Ghaffari   // -----------------------------------------------------------------------------
34177841947SLeila Ghaffari   // -- Create QFunction for quadrature data
34291e5af17SJed Brown   CeedQFunctionCreateInterior(ceed, 1, problem->setup_vol.qfunction,
34391e5af17SJed Brown                               problem->setup_vol.qfunction_loc,
34477841947SLeila Ghaffari                               &ceed_data->qf_setup_vol);
345841e4c73SJed Brown   if (problem->setup_vol.qfunction_context) {
346841e4c73SJed Brown     CeedQFunctionSetContext(ceed_data->qf_setup_vol,
347841e4c73SJed Brown                             problem->setup_vol.qfunction_context);
348841e4c73SJed Brown     CeedQFunctionContextDestroy(&problem->setup_vol.qfunction_context);
349841e4c73SJed Brown   }
35077841947SLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_vol, "dx", num_comp_x*dim,
35177841947SLeila Ghaffari                         CEED_EVAL_GRAD);
35277841947SLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_vol, "weight", 1, CEED_EVAL_WEIGHT);
353a61c78d6SJeremy L Thompson   CeedQFunctionAddOutput(ceed_data->qf_setup_vol, "qdata", q_data_size_vol,
35477841947SLeila Ghaffari                          CEED_EVAL_NONE);
35577841947SLeila Ghaffari 
35677841947SLeila Ghaffari   // -- Create QFunction for ICs
35791e5af17SJed Brown   CeedQFunctionCreateInterior(ceed, 1, problem->ics.qfunction,
35891e5af17SJed Brown                               problem->ics.qfunction_loc,
35977841947SLeila Ghaffari                               &ceed_data->qf_ics);
360841e4c73SJed Brown   CeedQFunctionSetContext(ceed_data->qf_ics, problem->ics.qfunction_context);
361841e4c73SJed Brown   CeedQFunctionContextDestroy(&problem->ics.qfunction_context);
36277841947SLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_ics, "x", num_comp_x, CEED_EVAL_INTERP);
36377841947SLeila Ghaffari   CeedQFunctionAddOutput(ceed_data->qf_ics, "q0", num_comp_q, CEED_EVAL_NONE);
36477841947SLeila Ghaffari 
36577841947SLeila Ghaffari   // -- Create QFunction for RHS
36691e5af17SJed Brown   if (problem->apply_vol_rhs.qfunction) {
36791e5af17SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_rhs.qfunction,
36891e5af17SJed Brown                                 problem->apply_vol_rhs.qfunction_loc, &ceed_data->qf_rhs_vol);
369841e4c73SJed Brown     CeedQFunctionSetContext(ceed_data->qf_rhs_vol,
370841e4c73SJed Brown                             problem->apply_vol_rhs.qfunction_context);
371841e4c73SJed Brown     CeedQFunctionContextDestroy(&problem->apply_vol_rhs.qfunction_context);
37277841947SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "q", num_comp_q, CEED_EVAL_INTERP);
373a3ae0734SJed Brown     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "Grad_q", num_comp_q*dim,
37477841947SLeila Ghaffari                           CEED_EVAL_GRAD);
375a61c78d6SJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "qdata", q_data_size_vol,
37677841947SLeila Ghaffari                           CEED_EVAL_NONE);
37777841947SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "x", num_comp_x, CEED_EVAL_INTERP);
37877841947SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_rhs_vol, "v", num_comp_q,
37977841947SLeila Ghaffari                            CEED_EVAL_INTERP);
380a3ae0734SJed Brown     CeedQFunctionAddOutput(ceed_data->qf_rhs_vol, "Grad_v", num_comp_q*dim,
38177841947SLeila Ghaffari                            CEED_EVAL_GRAD);
38277841947SLeila Ghaffari   }
38377841947SLeila Ghaffari 
38477841947SLeila Ghaffari   // -- Create QFunction for IFunction
38591e5af17SJed Brown   if (problem->apply_vol_ifunction.qfunction) {
38691e5af17SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_ifunction.qfunction,
38791e5af17SJed Brown                                 problem->apply_vol_ifunction.qfunction_loc, &ceed_data->qf_ifunction_vol);
388841e4c73SJed Brown     CeedQFunctionSetContext(ceed_data->qf_ifunction_vol,
389841e4c73SJed Brown                             problem->apply_vol_ifunction.qfunction_context);
390841e4c73SJed Brown     CeedQFunctionContextDestroy(&problem->apply_vol_ifunction.qfunction_context);
39177841947SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "q", num_comp_q,
39277841947SLeila Ghaffari                           CEED_EVAL_INTERP);
393a3ae0734SJed Brown     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "Grad_q", num_comp_q*dim,
39477841947SLeila Ghaffari                           CEED_EVAL_GRAD);
395a61c78d6SJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "q dot", num_comp_q,
39677841947SLeila Ghaffari                           CEED_EVAL_INTERP);
397a61c78d6SJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "qdata", q_data_size_vol,
39877841947SLeila Ghaffari                           CEED_EVAL_NONE);
39977841947SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "x", num_comp_x,
40077841947SLeila Ghaffari                           CEED_EVAL_INTERP);
40177841947SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "v", num_comp_q,
40277841947SLeila Ghaffari                            CEED_EVAL_INTERP);
403a3ae0734SJed Brown     CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "Grad_v", num_comp_q*dim,
40477841947SLeila Ghaffari                            CEED_EVAL_GRAD);
405a3ae0734SJed Brown     CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "jac_data",
406a3ae0734SJed Brown                            jac_data_size_vol, CEED_EVAL_NONE);
40777841947SLeila Ghaffari   }
40877841947SLeila Ghaffari 
409e334ad8fSJed Brown   CeedQFunction qf_ijacobian_vol = NULL;
410e334ad8fSJed Brown   if (problem->apply_vol_ijacobian.qfunction) {
411e334ad8fSJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_ijacobian.qfunction,
412e334ad8fSJed Brown                                 problem->apply_vol_ijacobian.qfunction_loc, &qf_ijacobian_vol);
413e334ad8fSJed Brown     CeedQFunctionSetContext(qf_ijacobian_vol,
414e334ad8fSJed Brown                             problem->apply_vol_ijacobian.qfunction_context);
415e334ad8fSJed Brown     CeedQFunctionContextDestroy(&problem->apply_vol_ijacobian.qfunction_context);
416e334ad8fSJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "dq", num_comp_q,
417e334ad8fSJed Brown                           CEED_EVAL_INTERP);
418e334ad8fSJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "Grad_dq", num_comp_q*dim,
419e334ad8fSJed Brown                           CEED_EVAL_GRAD);
420e334ad8fSJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "qdata", q_data_size_vol,
421e334ad8fSJed Brown                           CEED_EVAL_NONE);
422e334ad8fSJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "x", num_comp_x,
423e334ad8fSJed Brown                           CEED_EVAL_INTERP);
424e334ad8fSJed Brown     CeedQFunctionAddInput(qf_ijacobian_vol, "jac_data",
425e334ad8fSJed Brown                           jac_data_size_vol, CEED_EVAL_NONE);
426e334ad8fSJed Brown     CeedQFunctionAddOutput(qf_ijacobian_vol, "v", num_comp_q,
427e334ad8fSJed Brown                            CEED_EVAL_INTERP);
428e334ad8fSJed Brown     CeedQFunctionAddOutput(qf_ijacobian_vol, "Grad_v", num_comp_q*dim,
429e334ad8fSJed Brown                            CEED_EVAL_GRAD);
430e334ad8fSJed Brown   }
431e334ad8fSJed Brown 
43277841947SLeila Ghaffari   // ---------------------------------------------------------------------------
43377841947SLeila Ghaffari   // Element coordinates
43477841947SLeila Ghaffari   // ---------------------------------------------------------------------------
43577841947SLeila Ghaffari   // -- Create CEED vector
43677841947SLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_x, &ceed_data->x_coord,
43777841947SLeila Ghaffari                                   NULL);
43877841947SLeila Ghaffari 
43977841947SLeila Ghaffari   // -- Copy PETSc vector in CEED vector
44077841947SLeila Ghaffari   Vec               X_loc;
44177841947SLeila Ghaffari   const PetscScalar *X_loc_array;
44277841947SLeila Ghaffari   ierr = DMGetCoordinatesLocal(dm, &X_loc); CHKERRQ(ierr);
4431864f1c2SLeila Ghaffari   ierr = VecScale(X_loc, problem->dm_scale); CHKERRQ(ierr);
44477841947SLeila Ghaffari   ierr = VecGetArrayRead(X_loc, &X_loc_array); CHKERRQ(ierr);
44577841947SLeila Ghaffari   CeedVectorSetArray(ceed_data->x_coord, CEED_MEM_HOST, CEED_COPY_VALUES,
44677841947SLeila Ghaffari                      (PetscScalar *)X_loc_array);
44777841947SLeila Ghaffari   ierr = VecRestoreArrayRead(X_loc, &X_loc_array); CHKERRQ(ierr);
44877841947SLeila Ghaffari 
44977841947SLeila Ghaffari   // -----------------------------------------------------------------------------
45077841947SLeila Ghaffari   // CEED vectors
45177841947SLeila Ghaffari   // -----------------------------------------------------------------------------
45277841947SLeila Ghaffari   // -- Create CEED vector for geometric data
45377841947SLeila Ghaffari   CeedInt  num_qpts_vol;
45477841947SLeila Ghaffari   PetscInt loc_num_elem_vol;
45577841947SLeila Ghaffari   CeedBasisGetNumQuadraturePoints(ceed_data->basis_q, &num_qpts_vol);
45677841947SLeila Ghaffari   CeedElemRestrictionGetNumElements(ceed_data->elem_restr_q, &loc_num_elem_vol);
45777841947SLeila Ghaffari   CeedVectorCreate(ceed, q_data_size_vol*loc_num_elem_vol*num_qpts_vol,
45877841947SLeila Ghaffari                    &ceed_data->q_data);
45977841947SLeila Ghaffari 
460a3ae0734SJed Brown   CeedElemRestrictionCreateVector(elem_restr_jd_i, &jac_data, NULL);
46177841947SLeila Ghaffari   // -----------------------------------------------------------------------------
46277841947SLeila Ghaffari   // CEED Operators
46377841947SLeila Ghaffari   // -----------------------------------------------------------------------------
46477841947SLeila Ghaffari   // -- Create CEED operator for quadrature data
46577841947SLeila Ghaffari   CeedOperatorCreate(ceed, ceed_data->qf_setup_vol, NULL, NULL,
46677841947SLeila Ghaffari                      &ceed_data->op_setup_vol);
46777841947SLeila Ghaffari   CeedOperatorSetField(ceed_data->op_setup_vol, "dx", ceed_data->elem_restr_x,
46877841947SLeila Ghaffari                        ceed_data->basis_x, CEED_VECTOR_ACTIVE);
46977841947SLeila Ghaffari   CeedOperatorSetField(ceed_data->op_setup_vol, "weight",
470e6225c47SLeila Ghaffari                        CEED_ELEMRESTRICTION_NONE, ceed_data->basis_x, CEED_VECTOR_NONE);
471a61c78d6SJeremy L Thompson   CeedOperatorSetField(ceed_data->op_setup_vol, "qdata",
472e6225c47SLeila Ghaffari                        ceed_data->elem_restr_qd_i, CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
47377841947SLeila Ghaffari 
47477841947SLeila Ghaffari   // -- Create CEED operator for ICs
47577841947SLeila Ghaffari   CeedOperatorCreate(ceed, ceed_data->qf_ics, NULL, NULL, &ceed_data->op_ics);
47677841947SLeila Ghaffari   CeedOperatorSetField(ceed_data->op_ics, "x", ceed_data->elem_restr_x,
47777841947SLeila Ghaffari                        ceed_data->basis_xc, CEED_VECTOR_ACTIVE);
47877841947SLeila Ghaffari   CeedOperatorSetField(ceed_data->op_ics, "q0", ceed_data->elem_restr_q,
47977841947SLeila Ghaffari                        CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
480841e4c73SJed Brown   CeedOperatorContextGetFieldLabel(ceed_data->op_ics, "evaluation time",
481841e4c73SJed Brown                                    &user->phys->ics_time_label);
48277841947SLeila Ghaffari 
48377841947SLeila Ghaffari   // Create CEED operator for RHS
48477841947SLeila Ghaffari   if (ceed_data->qf_rhs_vol) {
48577841947SLeila Ghaffari     CeedOperator op;
48677841947SLeila Ghaffari     CeedOperatorCreate(ceed, ceed_data->qf_rhs_vol, NULL, NULL, &op);
48777841947SLeila Ghaffari     CeedOperatorSetField(op, "q", ceed_data->elem_restr_q, ceed_data->basis_q,
48877841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
489a3ae0734SJed Brown     CeedOperatorSetField(op, "Grad_q", ceed_data->elem_restr_q, ceed_data->basis_q,
49077841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
491a61c78d6SJeremy L Thompson     CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i,
492e6225c47SLeila Ghaffari                          CEED_BASIS_COLLOCATED, ceed_data->q_data);
49377841947SLeila Ghaffari     CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x,
49477841947SLeila Ghaffari                          ceed_data->x_coord);
49577841947SLeila Ghaffari     CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q,
49677841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
497a3ae0734SJed Brown     CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q,
49877841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
49977841947SLeila Ghaffari     user->op_rhs_vol = op;
50077841947SLeila Ghaffari   }
50177841947SLeila Ghaffari 
50277841947SLeila Ghaffari   // -- CEED operator for IFunction
50377841947SLeila Ghaffari   if (ceed_data->qf_ifunction_vol) {
50477841947SLeila Ghaffari     CeedOperator op;
50577841947SLeila Ghaffari     CeedOperatorCreate(ceed, ceed_data->qf_ifunction_vol, NULL, NULL, &op);
50677841947SLeila Ghaffari     CeedOperatorSetField(op, "q", ceed_data->elem_restr_q, ceed_data->basis_q,
50777841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
508a3ae0734SJed Brown     CeedOperatorSetField(op, "Grad_q", ceed_data->elem_restr_q, ceed_data->basis_q,
50977841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
510a61c78d6SJeremy L Thompson     CeedOperatorSetField(op, "q dot", ceed_data->elem_restr_q, ceed_data->basis_q,
51177841947SLeila Ghaffari                          user->q_dot_ceed);
512a61c78d6SJeremy L Thompson     CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i,
513e6225c47SLeila Ghaffari                          CEED_BASIS_COLLOCATED, ceed_data->q_data);
51477841947SLeila Ghaffari     CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x,
51577841947SLeila Ghaffari                          ceed_data->x_coord);
51677841947SLeila Ghaffari     CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q,
51777841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
518a3ae0734SJed Brown     CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q,
51977841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
520a3ae0734SJed Brown     CeedOperatorSetField(op, "jac_data", elem_restr_jd_i,
521a3ae0734SJed Brown                          CEED_BASIS_COLLOCATED, jac_data);
522a3ae0734SJed Brown 
52377841947SLeila Ghaffari     user->op_ifunction_vol = op;
52477841947SLeila Ghaffari   }
52577841947SLeila Ghaffari 
526e334ad8fSJed Brown   CeedOperator op_ijacobian_vol = NULL;
527e334ad8fSJed Brown   if (qf_ijacobian_vol) {
528e334ad8fSJed Brown     CeedOperator op;
529e334ad8fSJed Brown     CeedOperatorCreate(ceed, qf_ijacobian_vol, NULL, NULL, &op);
530e334ad8fSJed Brown     CeedOperatorSetField(op, "dq", ceed_data->elem_restr_q, ceed_data->basis_q,
531e334ad8fSJed Brown                          CEED_VECTOR_ACTIVE);
532e334ad8fSJed Brown     CeedOperatorSetField(op, "Grad_dq", ceed_data->elem_restr_q, ceed_data->basis_q,
533e334ad8fSJed Brown                          CEED_VECTOR_ACTIVE);
534e334ad8fSJed Brown     CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i,
535e334ad8fSJed Brown                          CEED_BASIS_COLLOCATED, ceed_data->q_data);
536e334ad8fSJed Brown     CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x,
537e334ad8fSJed Brown                          ceed_data->x_coord);
538e334ad8fSJed Brown     CeedOperatorSetField(op, "jac_data", elem_restr_jd_i,
539e334ad8fSJed Brown                          CEED_BASIS_COLLOCATED, jac_data);
540e334ad8fSJed Brown     CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q,
541e334ad8fSJed Brown                          CEED_VECTOR_ACTIVE);
542e334ad8fSJed Brown     CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q,
543e334ad8fSJed Brown                          CEED_VECTOR_ACTIVE);
544e334ad8fSJed Brown     op_ijacobian_vol = op;
545e334ad8fSJed Brown     CeedQFunctionDestroy(&qf_ijacobian_vol);
546e334ad8fSJed Brown   }
547e334ad8fSJed Brown 
54877841947SLeila Ghaffari   // *****************************************************************************
54977841947SLeila Ghaffari   // Set up CEED objects for the exterior domain (surface)
55077841947SLeila Ghaffari   // *****************************************************************************
55177841947SLeila Ghaffari   CeedInt height  = 1,
55277841947SLeila Ghaffari           dim_sur = dim - height,
55377841947SLeila Ghaffari           P_sur   = app_ctx->degree + 1,
55477841947SLeila Ghaffari           Q_sur   = P_sur + app_ctx->q_extra;
555e334ad8fSJed Brown   const CeedInt q_data_size_sur = problem->q_data_size_sur,
556e334ad8fSJed Brown                 jac_data_size_sur = problem->jac_data_size_sur;
55777841947SLeila Ghaffari 
55877841947SLeila Ghaffari   // -----------------------------------------------------------------------------
55977841947SLeila Ghaffari   // CEED Bases
56077841947SLeila Ghaffari   // -----------------------------------------------------------------------------
56177841947SLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim_sur, num_comp_q, P_sur, Q_sur,
56277841947SLeila Ghaffari                                   CEED_GAUSS, &ceed_data->basis_q_sur);
56377841947SLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim_sur, num_comp_x, 2, Q_sur, CEED_GAUSS,
56477841947SLeila Ghaffari                                   &ceed_data->basis_x_sur);
56577841947SLeila Ghaffari 
56677841947SLeila Ghaffari   // -----------------------------------------------------------------------------
56777841947SLeila Ghaffari   // CEED QFunctions
56877841947SLeila Ghaffari   // -----------------------------------------------------------------------------
56977841947SLeila Ghaffari   // -- Create QFunction for quadrature data
57091e5af17SJed Brown   CeedQFunctionCreateInterior(ceed, 1, problem->setup_sur.qfunction,
57191e5af17SJed Brown                               problem->setup_sur.qfunction_loc,
57277841947SLeila Ghaffari                               &ceed_data->qf_setup_sur);
573841e4c73SJed Brown   if (problem->setup_sur.qfunction_context) {
574841e4c73SJed Brown     CeedQFunctionSetContext(ceed_data->qf_setup_sur,
575841e4c73SJed Brown                             problem->setup_sur.qfunction_context);
576841e4c73SJed Brown     CeedQFunctionContextDestroy(&problem->setup_sur.qfunction_context);
577841e4c73SJed Brown   }
57877841947SLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_sur, "dx", num_comp_x*dim_sur,
57977841947SLeila Ghaffari                         CEED_EVAL_GRAD);
58077841947SLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_sur, "weight", 1, CEED_EVAL_WEIGHT);
581a61c78d6SJeremy L Thompson   CeedQFunctionAddOutput(ceed_data->qf_setup_sur, "surface qdata",
5822fe7aee7SLeila Ghaffari                          q_data_size_sur, CEED_EVAL_NONE);
58377841947SLeila Ghaffari 
5842fe7aee7SLeila Ghaffari   // -- Creat QFunction for inflow boundaries
58591e5af17SJed Brown   if (problem->apply_inflow.qfunction) {
58691e5af17SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_inflow.qfunction,
58791e5af17SJed Brown                                 problem->apply_inflow.qfunction_loc, &ceed_data->qf_apply_inflow);
588841e4c73SJed Brown     CeedQFunctionSetContext(ceed_data->qf_apply_inflow,
589841e4c73SJed Brown                             problem->apply_inflow.qfunction_context);
590841e4c73SJed Brown     CeedQFunctionContextDestroy(&problem->apply_inflow.qfunction_context);
5912fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "q", num_comp_q,
59277841947SLeila Ghaffari                           CEED_EVAL_INTERP);
593e8b03feeSJames Wright     CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "Grad_q", num_comp_q*(dim-1),
594e8b03feeSJames Wright                           CEED_EVAL_GRAD);
5952fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "surface qdata",
5962fe7aee7SLeila Ghaffari                           q_data_size_sur, CEED_EVAL_NONE);
5972fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "x", num_comp_x,
59877841947SLeila Ghaffari                           CEED_EVAL_INTERP);
5992fe7aee7SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_apply_inflow, "v", num_comp_q,
6002fe7aee7SLeila Ghaffari                            CEED_EVAL_INTERP);
6012fe7aee7SLeila Ghaffari   }
602e334ad8fSJed Brown   if (problem->apply_inflow_jacobian.qfunction) {
603e334ad8fSJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_inflow_jacobian.qfunction,
604e334ad8fSJed Brown                                 problem->apply_inflow_jacobian.qfunction_loc,
605e334ad8fSJed Brown                                 &ceed_data->qf_apply_inflow_jacobian);
606e334ad8fSJed Brown     CeedQFunctionSetContext(ceed_data->qf_apply_inflow_jacobian,
607e334ad8fSJed Brown                             problem->apply_inflow_jacobian.qfunction_context);
608e334ad8fSJed Brown     CeedQFunctionContextDestroy(&problem->apply_inflow_jacobian.qfunction_context);
609e334ad8fSJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_inflow_jacobian, "dq", num_comp_q,
610e334ad8fSJed Brown                           CEED_EVAL_INTERP);
611e334ad8fSJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_inflow_jacobian, "surface qdata",
612e334ad8fSJed Brown                           q_data_size_sur, CEED_EVAL_NONE);
613e334ad8fSJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_inflow_jacobian, "x", num_comp_x,
614e334ad8fSJed Brown                           CEED_EVAL_INTERP);
615e334ad8fSJed Brown     CeedQFunctionAddOutput(ceed_data->qf_apply_inflow_jacobian, "v", num_comp_q,
616e334ad8fSJed Brown                            CEED_EVAL_INTERP);
617e334ad8fSJed Brown   }
6182fe7aee7SLeila Ghaffari 
6192fe7aee7SLeila Ghaffari   // -- Creat QFunction for outflow boundaries
62091e5af17SJed Brown   if (problem->apply_outflow.qfunction) {
62191e5af17SJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_outflow.qfunction,
62291e5af17SJed Brown                                 problem->apply_outflow.qfunction_loc, &ceed_data->qf_apply_outflow);
623841e4c73SJed Brown     CeedQFunctionSetContext(ceed_data->qf_apply_outflow,
624841e4c73SJed Brown                             problem->apply_outflow.qfunction_context);
625841e4c73SJed Brown     CeedQFunctionContextDestroy(&problem->apply_outflow.qfunction_context);
6262fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "q", num_comp_q,
6272fe7aee7SLeila Ghaffari                           CEED_EVAL_INTERP);
628e8b03feeSJames Wright     CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "Grad_q", num_comp_q*(dim-1),
629e8b03feeSJames Wright                           CEED_EVAL_GRAD);
6302fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "surface qdata",
6312fe7aee7SLeila Ghaffari                           q_data_size_sur, CEED_EVAL_NONE);
6322fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "x", num_comp_x,
6332fe7aee7SLeila Ghaffari                           CEED_EVAL_INTERP);
6342fe7aee7SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_apply_outflow, "v", num_comp_q,
63577841947SLeila Ghaffari                            CEED_EVAL_INTERP);
63639c69132SJed Brown     if (jac_data_size_sur)
637e334ad8fSJed Brown       CeedQFunctionAddOutput(ceed_data->qf_apply_outflow, "surface jacobian data",
638e334ad8fSJed Brown                              jac_data_size_sur,
639e334ad8fSJed Brown                              CEED_EVAL_NONE);
640e334ad8fSJed Brown   }
641e334ad8fSJed Brown   if (problem->apply_outflow_jacobian.qfunction) {
642e334ad8fSJed Brown     CeedQFunctionCreateInterior(ceed, 1, problem->apply_outflow_jacobian.qfunction,
643e334ad8fSJed Brown                                 problem->apply_outflow_jacobian.qfunction_loc,
644e334ad8fSJed Brown                                 &ceed_data->qf_apply_outflow_jacobian);
645e334ad8fSJed Brown     CeedQFunctionSetContext(ceed_data->qf_apply_outflow_jacobian,
646e334ad8fSJed Brown                             problem->apply_outflow_jacobian.qfunction_context);
647e334ad8fSJed Brown     CeedQFunctionContextDestroy(&problem->apply_outflow_jacobian.qfunction_context);
648e334ad8fSJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_outflow_jacobian, "dq", num_comp_q,
649e334ad8fSJed Brown                           CEED_EVAL_INTERP);
650*0ec2498eSJames Wright     CeedQFunctionAddInput(ceed_data->qf_apply_outflow_jacobian, "Grad_dq", num_comp_q*dim_sur,
651*0ec2498eSJames Wright                           CEED_EVAL_GRAD);
652e334ad8fSJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_outflow_jacobian, "surface qdata",
653e334ad8fSJed Brown                           q_data_size_sur, CEED_EVAL_NONE);
654*0ec2498eSJames Wright     CeedQFunctionAddInput(ceed_data->qf_apply_outflow_jacobian, "x", num_comp_x,
655*0ec2498eSJames Wright                           CEED_EVAL_INTERP);
656e334ad8fSJed Brown     CeedQFunctionAddInput(ceed_data->qf_apply_outflow_jacobian,
657e334ad8fSJed Brown                           "surface jacobian data",
658e334ad8fSJed Brown                           jac_data_size_sur, CEED_EVAL_NONE);
659e334ad8fSJed Brown     CeedQFunctionAddOutput(ceed_data->qf_apply_outflow_jacobian, "v", num_comp_q,
660e334ad8fSJed Brown                            CEED_EVAL_INTERP);
66177841947SLeila Ghaffari   }
66277841947SLeila Ghaffari 
66377841947SLeila Ghaffari   // *****************************************************************************
66477841947SLeila Ghaffari   // CEED Operator Apply
66577841947SLeila Ghaffari   // *****************************************************************************
66677841947SLeila Ghaffari   // -- Apply CEED Operator for the geometric data
66777841947SLeila Ghaffari   CeedOperatorApply(ceed_data->op_setup_vol, ceed_data->x_coord,
66877841947SLeila Ghaffari                     ceed_data->q_data, CEED_REQUEST_IMMEDIATE);
66977841947SLeila Ghaffari 
67077841947SLeila Ghaffari   // -- Create and apply CEED Composite Operator for the entire domain
67177841947SLeila Ghaffari   if (!user->phys->implicit) { // RHS
67277841947SLeila Ghaffari     ierr = CreateOperatorForDomain(ceed, dm, bc, ceed_data, user->phys,
673e334ad8fSJed Brown                                    user->op_rhs_vol, NULL, height, P_sur, Q_sur,
674e334ad8fSJed Brown                                    q_data_size_sur, 0,
675e334ad8fSJed Brown                                    &user->op_rhs, NULL); CHKERRQ(ierr);
67677841947SLeila Ghaffari   } else { // IFunction
67777841947SLeila Ghaffari     ierr = CreateOperatorForDomain(ceed, dm, bc, ceed_data, user->phys,
678e334ad8fSJed Brown                                    user->op_ifunction_vol, op_ijacobian_vol,
679e334ad8fSJed Brown                                    height, P_sur, Q_sur,
680e334ad8fSJed Brown                                    q_data_size_sur, jac_data_size_sur,
681e334ad8fSJed Brown                                    &user->op_ifunction,
682e334ad8fSJed Brown                                    op_ijacobian_vol ? &user->op_ijacobian : NULL); CHKERRQ(ierr);
683e334ad8fSJed Brown     if (user->op_ijacobian) {
684e334ad8fSJed Brown       CeedOperatorContextGetFieldLabel(user->op_ijacobian, "ijacobian time shift",
685e334ad8fSJed Brown                                        &user->phys->ijacobian_time_shift_label);
686e334ad8fSJed Brown     }
687e334ad8fSJed Brown 
68877841947SLeila Ghaffari   }
689a3ae0734SJed Brown   CeedElemRestrictionDestroy(&elem_restr_jd_i);
69022d320f5SLeila Ghaffari   CeedOperatorDestroy(&op_ijacobian_vol);
691a3ae0734SJed Brown   CeedVectorDestroy(&jac_data);
69277841947SLeila Ghaffari   PetscFunctionReturn(0);
69377841947SLeila Ghaffari }
694