xref: /libCEED/examples/fluids/src/setuplibceed.c (revision 3d8e882215d238700cdceb37404f76ca7fa24eaa)
1*3d8e8822SJeremy L Thompson // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors.
2*3d8e8822SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details.
377841947SLeila Ghaffari //
4*3d8e8822SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause
577841947SLeila Ghaffari //
6*3d8e8822SJeremy L Thompson // This file is part of CEED:  http://github.com/ceed
777841947SLeila Ghaffari 
877841947SLeila Ghaffari /// @file
977841947SLeila Ghaffari /// Setup libCEED for Navier-Stokes example using PETSc
1077841947SLeila Ghaffari 
1177841947SLeila Ghaffari #include "../navierstokes.h"
1277841947SLeila Ghaffari 
1377841947SLeila Ghaffari // Utility function - essential BC dofs are encoded in closure indices as -(i+1).
1477841947SLeila Ghaffari PetscInt Involute(PetscInt i) {
1577841947SLeila Ghaffari   return i >= 0 ? i : -(i+1);
1677841947SLeila Ghaffari }
1777841947SLeila Ghaffari 
1877841947SLeila Ghaffari // Utility function to create local CEED restriction
197ed3e4cdSJeremy L Thompson PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height,
207ed3e4cdSJeremy L Thompson     DMLabel domain_label, CeedInt value, CeedElemRestriction *elem_restr) {
217ed3e4cdSJeremy L Thompson   PetscInt num_elem, elem_size, num_dof, num_comp, *elem_restr_offsets;
2277841947SLeila Ghaffari   PetscErrorCode ierr;
237ed3e4cdSJeremy L Thompson 
2477841947SLeila Ghaffari   PetscFunctionBeginUser;
257ed3e4cdSJeremy L Thompson   ierr = DMPlexGetLocalOffsets(dm, domain_label, value, height, 0, &num_elem,
267ed3e4cdSJeremy L Thompson                                &elem_size, &num_comp, &num_dof, &elem_restr_offsets);
277ed3e4cdSJeremy L Thompson   CHKERRQ(ierr);
2877841947SLeila Ghaffari 
297ed3e4cdSJeremy L Thompson   CeedElemRestrictionCreate(ceed, num_elem, elem_size, num_comp,
307ed3e4cdSJeremy L Thompson                             1, num_dof, CEED_MEM_HOST, CEED_COPY_VALUES,
317ed3e4cdSJeremy L Thompson                             elem_restr_offsets, elem_restr);
327ed3e4cdSJeremy L Thompson   ierr = PetscFree(elem_restr_offsets); CHKERRQ(ierr);
3377841947SLeila Ghaffari 
3477841947SLeila Ghaffari   PetscFunctionReturn(0);
3577841947SLeila Ghaffari }
3677841947SLeila Ghaffari 
3777841947SLeila Ghaffari // Utility function to get Ceed Restriction for each domain
3877841947SLeila Ghaffari PetscErrorCode GetRestrictionForDomain(Ceed ceed, DM dm, CeedInt height,
3977841947SLeila Ghaffari                                        DMLabel domain_label, PetscInt value,
407ed3e4cdSJeremy L Thompson                                        CeedInt Q, CeedInt q_data_size,
4177841947SLeila Ghaffari                                        CeedElemRestriction *elem_restr_q,
4277841947SLeila Ghaffari                                        CeedElemRestriction *elem_restr_x,
4377841947SLeila Ghaffari                                        CeedElemRestriction *elem_restr_qd_i) {
4477841947SLeila Ghaffari   DM             dm_coord;
4577841947SLeila Ghaffari   CeedInt        dim, loc_num_elem;
4677841947SLeila Ghaffari   CeedInt        Q_dim;
4777841947SLeila Ghaffari   PetscErrorCode ierr;
4877841947SLeila Ghaffari   PetscFunctionBeginUser;
4977841947SLeila Ghaffari 
5077841947SLeila Ghaffari   ierr = DMGetDimension(dm, &dim); CHKERRQ(ierr);
5177841947SLeila Ghaffari   dim -= height;
5277841947SLeila Ghaffari   Q_dim = CeedIntPow(Q, dim);
5377841947SLeila Ghaffari   ierr = DMGetCoordinateDM(dm, &dm_coord); CHKERRQ(ierr);
5477841947SLeila Ghaffari   ierr = DMPlexSetClosurePermutationTensor(dm_coord, PETSC_DETERMINE, NULL);
5577841947SLeila Ghaffari   CHKERRQ(ierr);
567ed3e4cdSJeremy L Thompson   ierr = CreateRestrictionFromPlex(ceed, dm, height, domain_label, value,
577ed3e4cdSJeremy L Thompson                                    elem_restr_q);
587ed3e4cdSJeremy L Thompson   CHKERRQ(ierr);
597ed3e4cdSJeremy L Thompson   ierr = CreateRestrictionFromPlex(ceed, dm_coord, height, domain_label, value,
607ed3e4cdSJeremy L Thompson                                    elem_restr_x);
617ed3e4cdSJeremy L Thompson   CHKERRQ(ierr);
6277841947SLeila Ghaffari   CeedElemRestrictionGetNumElements(*elem_restr_q, &loc_num_elem);
6377841947SLeila Ghaffari   CeedElemRestrictionCreateStrided(ceed, loc_num_elem, Q_dim,
6477841947SLeila Ghaffari                                    q_data_size, q_data_size*loc_num_elem*Q_dim,
6577841947SLeila Ghaffari                                    CEED_STRIDES_BACKEND, elem_restr_qd_i);
6677841947SLeila Ghaffari   PetscFunctionReturn(0);
6777841947SLeila Ghaffari }
6877841947SLeila Ghaffari 
6977841947SLeila Ghaffari // Utility function to create CEED Composite Operator for the entire domain
7077841947SLeila Ghaffari PetscErrorCode CreateOperatorForDomain(Ceed ceed, DM dm, SimpleBC bc,
7177841947SLeila Ghaffari                                        CeedData ceed_data, Physics phys,
7277841947SLeila Ghaffari                                        CeedOperator op_apply_vol, CeedInt height,
7377841947SLeila Ghaffari                                        CeedInt P_sur, CeedInt Q_sur, CeedInt q_data_size_sur,
7477841947SLeila Ghaffari                                        CeedOperator *op_apply) {
752fe7aee7SLeila Ghaffari   //CeedInt        dim;
7677841947SLeila Ghaffari   DMLabel        domain_label;
7777841947SLeila Ghaffari   PetscErrorCode ierr;
7877841947SLeila Ghaffari   PetscFunctionBeginUser;
7977841947SLeila Ghaffari 
8077841947SLeila Ghaffari   // Create Composite Operaters
8177841947SLeila Ghaffari   CeedCompositeOperatorCreate(ceed, op_apply);
8277841947SLeila Ghaffari 
8377841947SLeila Ghaffari   // --Apply Sub-Operator for the volume
8477841947SLeila Ghaffari   CeedCompositeOperatorAddSub(*op_apply, op_apply_vol);
8577841947SLeila Ghaffari 
8677841947SLeila Ghaffari   // -- Create Sub-Operator for in/outflow BCs
87e6225c47SLeila Ghaffari   if (phys->has_neumann) {
8877841947SLeila Ghaffari     // --- Setup
8977841947SLeila Ghaffari     ierr = DMGetLabel(dm, "Face Sets", &domain_label); CHKERRQ(ierr);
902fe7aee7SLeila Ghaffari     //ierr = DMGetDimension(dm, &dim); CHKERRQ(ierr);
9177841947SLeila Ghaffari 
9277841947SLeila Ghaffari     // --- Get number of quadrature points for the boundaries
9377841947SLeila Ghaffari     CeedInt num_qpts_sur;
9477841947SLeila Ghaffari     CeedBasisGetNumQuadraturePoints(ceed_data->basis_q_sur, &num_qpts_sur);
9577841947SLeila Ghaffari 
962fe7aee7SLeila Ghaffari     // --- Create Sub-Operator for inflow boundaries
972fe7aee7SLeila Ghaffari     for (CeedInt i=0; i < bc->num_inflow; i++) {
9877841947SLeila Ghaffari       CeedVector          q_data_sur;
992fe7aee7SLeila Ghaffari       CeedOperator        op_setup_sur, op_apply_inflow;
1002fe7aee7SLeila Ghaffari       CeedElemRestriction elem_restr_x_sur, elem_restr_q_sur, elem_restr_qd_i_sur;
10177841947SLeila Ghaffari 
10277841947SLeila Ghaffari       // ---- CEED Restriction
1032fe7aee7SLeila Ghaffari       ierr = GetRestrictionForDomain(ceed, dm, height, domain_label, bc->inflows[i],
1042fe7aee7SLeila Ghaffari                                      Q_sur, q_data_size_sur, &elem_restr_q_sur, &elem_restr_x_sur,
1052fe7aee7SLeila Ghaffari                                      &elem_restr_qd_i_sur);
10677841947SLeila Ghaffari       CHKERRQ(ierr);
10777841947SLeila Ghaffari 
10877841947SLeila Ghaffari       // ---- CEED Vector
10977841947SLeila Ghaffari       PetscInt loc_num_elem_sur;
11077841947SLeila Ghaffari       CeedElemRestrictionGetNumElements(elem_restr_q_sur, &loc_num_elem_sur);
11177841947SLeila Ghaffari       CeedVectorCreate(ceed, q_data_size_sur*loc_num_elem_sur*num_qpts_sur,
11277841947SLeila Ghaffari                        &q_data_sur);
11377841947SLeila Ghaffari 
11477841947SLeila Ghaffari       // ---- CEED Operator
11577841947SLeila Ghaffari       // ----- CEED Operator for Setup (geometric factors)
11677841947SLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_setup_sur, NULL, NULL, &op_setup_sur);
11777841947SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "dx", elem_restr_x_sur,
118e6225c47SLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_ACTIVE);
11977841947SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "weight", CEED_ELEMRESTRICTION_NONE,
12077841947SLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_NONE);
121a61c78d6SJeremy L Thompson       CeedOperatorSetField(op_setup_sur, "surface qdata", elem_restr_qd_i_sur,
12277841947SLeila Ghaffari                            CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
12377841947SLeila Ghaffari 
12477841947SLeila Ghaffari       // ----- CEED Operator for Physics
1252fe7aee7SLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_apply_inflow, NULL, NULL,
1262fe7aee7SLeila Ghaffari                          &op_apply_inflow);
1272fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "q", elem_restr_q_sur,
12877841947SLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
1292fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "surface qdata", elem_restr_qd_i_sur,
13077841947SLeila Ghaffari                            CEED_BASIS_COLLOCATED, q_data_sur);
1312fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "x", elem_restr_x_sur,
13277841947SLeila Ghaffari                            ceed_data->basis_x_sur, ceed_data->x_coord);
1332fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_inflow, "v", elem_restr_q_sur,
13477841947SLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
13577841947SLeila Ghaffari 
13677841947SLeila Ghaffari       // ----- Apply CEED operator for Setup
13777841947SLeila Ghaffari       CeedOperatorApply(op_setup_sur, ceed_data->x_coord, q_data_sur,
13877841947SLeila Ghaffari                         CEED_REQUEST_IMMEDIATE);
13977841947SLeila Ghaffari 
1402fe7aee7SLeila Ghaffari       // ----- Apply Sub-Operator for Physics
1412fe7aee7SLeila Ghaffari       CeedCompositeOperatorAddSub(*op_apply, op_apply_inflow);
14277841947SLeila Ghaffari 
14377841947SLeila Ghaffari       // ----- Cleanup
14477841947SLeila Ghaffari       CeedVectorDestroy(&q_data_sur);
14577841947SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_q_sur);
14677841947SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_x_sur);
14777841947SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_qd_i_sur);
14877841947SLeila Ghaffari       CeedOperatorDestroy(&op_setup_sur);
1492fe7aee7SLeila Ghaffari       CeedOperatorDestroy(&op_apply_inflow);
15077841947SLeila Ghaffari     }
15177841947SLeila Ghaffari 
1522fe7aee7SLeila Ghaffari     // --- Create Sub-Operator for outflow boundaries
1532fe7aee7SLeila Ghaffari     for (CeedInt i=0; i < bc->num_outflow; i++) {
1542fe7aee7SLeila Ghaffari       CeedVector          q_data_sur;
1552fe7aee7SLeila Ghaffari       CeedOperator        op_setup_sur, op_apply_outflow;
1562fe7aee7SLeila Ghaffari       CeedElemRestriction elem_restr_x_sur, elem_restr_q_sur, elem_restr_qd_i_sur;
1572fe7aee7SLeila Ghaffari 
1582fe7aee7SLeila Ghaffari       // ---- CEED Restriction
1592fe7aee7SLeila Ghaffari       ierr = GetRestrictionForDomain(ceed, dm, height, domain_label, bc->outflows[i],
1602fe7aee7SLeila Ghaffari                                      Q_sur, q_data_size_sur, &elem_restr_q_sur, &elem_restr_x_sur,
1612fe7aee7SLeila Ghaffari                                      &elem_restr_qd_i_sur);
1622fe7aee7SLeila Ghaffari       CHKERRQ(ierr);
1632fe7aee7SLeila Ghaffari 
1642fe7aee7SLeila Ghaffari       // ---- CEED Vector
1652fe7aee7SLeila Ghaffari       PetscInt loc_num_elem_sur;
1662fe7aee7SLeila Ghaffari       CeedElemRestrictionGetNumElements(elem_restr_q_sur, &loc_num_elem_sur);
1672fe7aee7SLeila Ghaffari       CeedVectorCreate(ceed, q_data_size_sur*loc_num_elem_sur*num_qpts_sur,
1682fe7aee7SLeila Ghaffari                        &q_data_sur);
1692fe7aee7SLeila Ghaffari 
1702fe7aee7SLeila Ghaffari       // ---- CEED Operator
1712fe7aee7SLeila Ghaffari       // ----- CEED Operator for Setup (geometric factors)
1722fe7aee7SLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_setup_sur, NULL, NULL, &op_setup_sur);
1732fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "dx", elem_restr_x_sur,
1742fe7aee7SLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_ACTIVE);
1752fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "weight", CEED_ELEMRESTRICTION_NONE,
1762fe7aee7SLeila Ghaffari                            ceed_data->basis_x_sur, CEED_VECTOR_NONE);
1772fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_setup_sur, "surface qdata", elem_restr_qd_i_sur,
1782fe7aee7SLeila Ghaffari                            CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
1792fe7aee7SLeila Ghaffari 
1802fe7aee7SLeila Ghaffari       // ----- CEED Operator for Physics
1812fe7aee7SLeila Ghaffari       CeedOperatorCreate(ceed, ceed_data->qf_apply_outflow, NULL, NULL,
1822fe7aee7SLeila Ghaffari                          &op_apply_outflow);
1832fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "q", elem_restr_q_sur,
1842fe7aee7SLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
1852fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "surface qdata", elem_restr_qd_i_sur,
1862fe7aee7SLeila Ghaffari                            CEED_BASIS_COLLOCATED, q_data_sur);
1872fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "x", elem_restr_x_sur,
1882fe7aee7SLeila Ghaffari                            ceed_data->basis_x_sur, ceed_data->x_coord);
1892fe7aee7SLeila Ghaffari       CeedOperatorSetField(op_apply_outflow, "v", elem_restr_q_sur,
1902fe7aee7SLeila Ghaffari                            ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE);
1912fe7aee7SLeila Ghaffari 
1922fe7aee7SLeila Ghaffari       // ----- Apply CEED operator for Setup
1932fe7aee7SLeila Ghaffari       CeedOperatorApply(op_setup_sur, ceed_data->x_coord, q_data_sur,
1942fe7aee7SLeila Ghaffari                         CEED_REQUEST_IMMEDIATE);
1952fe7aee7SLeila Ghaffari 
1962fe7aee7SLeila Ghaffari       // ----- Apply Sub-Operator for Physics
1972fe7aee7SLeila Ghaffari       CeedCompositeOperatorAddSub(*op_apply, op_apply_outflow);
1982fe7aee7SLeila Ghaffari 
1992fe7aee7SLeila Ghaffari       // ----- Cleanup
2002fe7aee7SLeila Ghaffari       CeedVectorDestroy(&q_data_sur);
2012fe7aee7SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_q_sur);
2022fe7aee7SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_x_sur);
2032fe7aee7SLeila Ghaffari       CeedElemRestrictionDestroy(&elem_restr_qd_i_sur);
2042fe7aee7SLeila Ghaffari       CeedOperatorDestroy(&op_setup_sur);
2052fe7aee7SLeila Ghaffari       CeedOperatorDestroy(&op_apply_outflow);
2062fe7aee7SLeila Ghaffari     }
2072fe7aee7SLeila Ghaffari   }
20877841947SLeila Ghaffari   PetscFunctionReturn(0);
20977841947SLeila Ghaffari }
21077841947SLeila Ghaffari 
21177841947SLeila Ghaffari PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user,
21277841947SLeila Ghaffari                             AppCtx app_ctx, ProblemData *problem, SimpleBC bc) {
21377841947SLeila Ghaffari   PetscErrorCode ierr;
21477841947SLeila Ghaffari   PetscFunctionBeginUser;
21577841947SLeila Ghaffari 
21677841947SLeila Ghaffari   // *****************************************************************************
21777841947SLeila Ghaffari   // Set up CEED objects for the interior domain (volume)
21877841947SLeila Ghaffari   // *****************************************************************************
21977841947SLeila Ghaffari   const PetscInt num_comp_q      = 5;
22077841947SLeila Ghaffari   const CeedInt  dim             = problem->dim,
22177841947SLeila Ghaffari                  num_comp_x      = problem->dim,
22277841947SLeila Ghaffari                  q_data_size_vol = problem->q_data_size_vol,
22377841947SLeila Ghaffari                  P               = app_ctx->degree + 1,
22477841947SLeila Ghaffari                  Q               = P + app_ctx->q_extra;
22577841947SLeila Ghaffari 
22677841947SLeila Ghaffari   // -----------------------------------------------------------------------------
22777841947SLeila Ghaffari   // CEED Bases
22877841947SLeila Ghaffari   // -----------------------------------------------------------------------------
22977841947SLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_q, P, Q, CEED_GAUSS,
23077841947SLeila Ghaffari                                   &ceed_data->basis_q);
23177841947SLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_x, 2, Q, CEED_GAUSS,
23277841947SLeila Ghaffari                                   &ceed_data->basis_x);
23377841947SLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_x, 2, P,
23477841947SLeila Ghaffari                                   CEED_GAUSS_LOBATTO, &ceed_data->basis_xc);
23577841947SLeila Ghaffari 
23677841947SLeila Ghaffari   // -----------------------------------------------------------------------------
23777841947SLeila Ghaffari   // CEED Restrictions
23877841947SLeila Ghaffari   // -----------------------------------------------------------------------------
23977841947SLeila Ghaffari   // -- Create restriction
2407ed3e4cdSJeremy L Thompson   ierr = GetRestrictionForDomain(ceed, dm, 0, 0, 0, Q, q_data_size_vol,
2417ed3e4cdSJeremy L Thompson                                  &ceed_data->elem_restr_q, &ceed_data->elem_restr_x,
24277841947SLeila Ghaffari                                  &ceed_data->elem_restr_qd_i); CHKERRQ(ierr);
24377841947SLeila Ghaffari   // -- Create E vectors
24477841947SLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->q_ceed, NULL);
24577841947SLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->q_dot_ceed,
24677841947SLeila Ghaffari                                   NULL);
24777841947SLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->g_ceed, NULL);
24877841947SLeila Ghaffari 
24977841947SLeila Ghaffari   // -----------------------------------------------------------------------------
25077841947SLeila Ghaffari   // CEED QFunctions
25177841947SLeila Ghaffari   // -----------------------------------------------------------------------------
25277841947SLeila Ghaffari   // -- Create QFunction for quadrature data
25377841947SLeila Ghaffari   CeedQFunctionCreateInterior(ceed, 1, problem->setup_vol, problem->setup_vol_loc,
25477841947SLeila Ghaffari                               &ceed_data->qf_setup_vol);
25577841947SLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_vol, "dx", num_comp_x*dim,
25677841947SLeila Ghaffari                         CEED_EVAL_GRAD);
25777841947SLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_vol, "weight", 1, CEED_EVAL_WEIGHT);
258a61c78d6SJeremy L Thompson   CeedQFunctionAddOutput(ceed_data->qf_setup_vol, "qdata", q_data_size_vol,
25977841947SLeila Ghaffari                          CEED_EVAL_NONE);
26077841947SLeila Ghaffari 
26177841947SLeila Ghaffari   // -- Create QFunction for ICs
26277841947SLeila Ghaffari   CeedQFunctionCreateInterior(ceed, 1, problem->ics, problem->ics_loc,
26377841947SLeila Ghaffari                               &ceed_data->qf_ics);
26477841947SLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_ics, "x", num_comp_x, CEED_EVAL_INTERP);
26577841947SLeila Ghaffari   CeedQFunctionAddOutput(ceed_data->qf_ics, "q0", num_comp_q, CEED_EVAL_NONE);
26677841947SLeila Ghaffari 
26777841947SLeila Ghaffari   // -- Create QFunction for RHS
26877841947SLeila Ghaffari   if (problem->apply_vol_rhs) {
26977841947SLeila Ghaffari     CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_rhs,
27077841947SLeila Ghaffari                                 problem->apply_vol_rhs_loc, &ceed_data->qf_rhs_vol);
27177841947SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "q", num_comp_q, CEED_EVAL_INTERP);
27277841947SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "dq", num_comp_q*dim,
27377841947SLeila Ghaffari                           CEED_EVAL_GRAD);
274a61c78d6SJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "qdata", q_data_size_vol,
27577841947SLeila Ghaffari                           CEED_EVAL_NONE);
27677841947SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "x", num_comp_x, CEED_EVAL_INTERP);
27777841947SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_rhs_vol, "v", num_comp_q,
27877841947SLeila Ghaffari                            CEED_EVAL_INTERP);
27977841947SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_rhs_vol, "dv", num_comp_q*dim,
28077841947SLeila Ghaffari                            CEED_EVAL_GRAD);
28177841947SLeila Ghaffari   }
28277841947SLeila Ghaffari 
28377841947SLeila Ghaffari   // -- Create QFunction for IFunction
28477841947SLeila Ghaffari   if (problem->apply_vol_ifunction) {
28577841947SLeila Ghaffari     CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_ifunction,
28677841947SLeila Ghaffari                                 problem->apply_vol_ifunction_loc, &ceed_data->qf_ifunction_vol);
28777841947SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "q", num_comp_q,
28877841947SLeila Ghaffari                           CEED_EVAL_INTERP);
28977841947SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "dq", num_comp_q*dim,
29077841947SLeila Ghaffari                           CEED_EVAL_GRAD);
291a61c78d6SJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "q dot", num_comp_q,
29277841947SLeila Ghaffari                           CEED_EVAL_INTERP);
293a61c78d6SJeremy L Thompson     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "qdata", q_data_size_vol,
29477841947SLeila Ghaffari                           CEED_EVAL_NONE);
29577841947SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "x", num_comp_x,
29677841947SLeila Ghaffari                           CEED_EVAL_INTERP);
29777841947SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "v", num_comp_q,
29877841947SLeila Ghaffari                            CEED_EVAL_INTERP);
29977841947SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "dv", num_comp_q*dim,
30077841947SLeila Ghaffari                            CEED_EVAL_GRAD);
30177841947SLeila Ghaffari   }
30277841947SLeila Ghaffari 
30377841947SLeila Ghaffari   // ---------------------------------------------------------------------------
30477841947SLeila Ghaffari   // Element coordinates
30577841947SLeila Ghaffari   // ---------------------------------------------------------------------------
30677841947SLeila Ghaffari   // -- Create CEED vector
30777841947SLeila Ghaffari   CeedElemRestrictionCreateVector(ceed_data->elem_restr_x, &ceed_data->x_coord,
30877841947SLeila Ghaffari                                   NULL);
30977841947SLeila Ghaffari 
31077841947SLeila Ghaffari   // -- Copy PETSc vector in CEED vector
31177841947SLeila Ghaffari   Vec               X_loc;
31277841947SLeila Ghaffari   const PetscScalar *X_loc_array;
31377841947SLeila Ghaffari   ierr = DMGetCoordinatesLocal(dm, &X_loc); CHKERRQ(ierr);
3141864f1c2SLeila Ghaffari   ierr = VecScale(X_loc, problem->dm_scale); CHKERRQ(ierr);
31577841947SLeila Ghaffari   ierr = VecGetArrayRead(X_loc, &X_loc_array); CHKERRQ(ierr);
31677841947SLeila Ghaffari   CeedVectorSetArray(ceed_data->x_coord, CEED_MEM_HOST, CEED_COPY_VALUES,
31777841947SLeila Ghaffari                      (PetscScalar *)X_loc_array);
31877841947SLeila Ghaffari   ierr = VecRestoreArrayRead(X_loc, &X_loc_array); CHKERRQ(ierr);
31977841947SLeila Ghaffari 
32077841947SLeila Ghaffari   // -----------------------------------------------------------------------------
32177841947SLeila Ghaffari   // CEED vectors
32277841947SLeila Ghaffari   // -----------------------------------------------------------------------------
32377841947SLeila Ghaffari   // -- Create CEED vector for geometric data
32477841947SLeila Ghaffari   CeedInt  num_qpts_vol;
32577841947SLeila Ghaffari   PetscInt loc_num_elem_vol;
32677841947SLeila Ghaffari   CeedBasisGetNumQuadraturePoints(ceed_data->basis_q, &num_qpts_vol);
32777841947SLeila Ghaffari   CeedElemRestrictionGetNumElements(ceed_data->elem_restr_q, &loc_num_elem_vol);
32877841947SLeila Ghaffari   CeedVectorCreate(ceed, q_data_size_vol*loc_num_elem_vol*num_qpts_vol,
32977841947SLeila Ghaffari                    &ceed_data->q_data);
33077841947SLeila Ghaffari 
33177841947SLeila Ghaffari   // -----------------------------------------------------------------------------
33277841947SLeila Ghaffari   // CEED Operators
33377841947SLeila Ghaffari   // -----------------------------------------------------------------------------
33477841947SLeila Ghaffari   // -- Create CEED operator for quadrature data
33577841947SLeila Ghaffari   CeedOperatorCreate(ceed, ceed_data->qf_setup_vol, NULL, NULL,
33677841947SLeila Ghaffari                      &ceed_data->op_setup_vol);
33777841947SLeila Ghaffari   CeedOperatorSetField(ceed_data->op_setup_vol, "dx", ceed_data->elem_restr_x,
33877841947SLeila Ghaffari                        ceed_data->basis_x, CEED_VECTOR_ACTIVE);
33977841947SLeila Ghaffari   CeedOperatorSetField(ceed_data->op_setup_vol, "weight",
340e6225c47SLeila Ghaffari                        CEED_ELEMRESTRICTION_NONE, ceed_data->basis_x, CEED_VECTOR_NONE);
341a61c78d6SJeremy L Thompson   CeedOperatorSetField(ceed_data->op_setup_vol, "qdata",
342e6225c47SLeila Ghaffari                        ceed_data->elem_restr_qd_i, CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
34377841947SLeila Ghaffari 
34477841947SLeila Ghaffari   // -- Create CEED operator for ICs
34577841947SLeila Ghaffari   CeedOperatorCreate(ceed, ceed_data->qf_ics, NULL, NULL, &ceed_data->op_ics);
34677841947SLeila Ghaffari   CeedOperatorSetField(ceed_data->op_ics, "x", ceed_data->elem_restr_x,
34777841947SLeila Ghaffari                        ceed_data->basis_xc, CEED_VECTOR_ACTIVE);
34877841947SLeila Ghaffari   CeedOperatorSetField(ceed_data->op_ics, "q0", ceed_data->elem_restr_q,
34977841947SLeila Ghaffari                        CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
35077841947SLeila Ghaffari 
35177841947SLeila Ghaffari   // Create CEED operator for RHS
35277841947SLeila Ghaffari   if (ceed_data->qf_rhs_vol) {
35377841947SLeila Ghaffari     CeedOperator op;
35477841947SLeila Ghaffari     CeedOperatorCreate(ceed, ceed_data->qf_rhs_vol, NULL, NULL, &op);
35577841947SLeila Ghaffari     CeedOperatorSetField(op, "q", ceed_data->elem_restr_q, ceed_data->basis_q,
35677841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
35777841947SLeila Ghaffari     CeedOperatorSetField(op, "dq", ceed_data->elem_restr_q, ceed_data->basis_q,
35877841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
359a61c78d6SJeremy L Thompson     CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i,
360e6225c47SLeila Ghaffari                          CEED_BASIS_COLLOCATED, ceed_data->q_data);
36177841947SLeila Ghaffari     CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x,
36277841947SLeila Ghaffari                          ceed_data->x_coord);
36377841947SLeila Ghaffari     CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q,
36477841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
36577841947SLeila Ghaffari     CeedOperatorSetField(op, "dv", ceed_data->elem_restr_q, ceed_data->basis_q,
36677841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
36777841947SLeila Ghaffari     user->op_rhs_vol = op;
36877841947SLeila Ghaffari   }
36977841947SLeila Ghaffari 
37077841947SLeila Ghaffari   // -- CEED operator for IFunction
37177841947SLeila Ghaffari   if (ceed_data->qf_ifunction_vol) {
37277841947SLeila Ghaffari     CeedOperator op;
37377841947SLeila Ghaffari     CeedOperatorCreate(ceed, ceed_data->qf_ifunction_vol, NULL, NULL, &op);
37477841947SLeila Ghaffari     CeedOperatorSetField(op, "q", ceed_data->elem_restr_q, ceed_data->basis_q,
37577841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
37677841947SLeila Ghaffari     CeedOperatorSetField(op, "dq", ceed_data->elem_restr_q, ceed_data->basis_q,
37777841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
378a61c78d6SJeremy L Thompson     CeedOperatorSetField(op, "q dot", ceed_data->elem_restr_q, ceed_data->basis_q,
37977841947SLeila Ghaffari                          user->q_dot_ceed);
380a61c78d6SJeremy L Thompson     CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i,
381e6225c47SLeila Ghaffari                          CEED_BASIS_COLLOCATED, ceed_data->q_data);
38277841947SLeila Ghaffari     CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x,
38377841947SLeila Ghaffari                          ceed_data->x_coord);
38477841947SLeila Ghaffari     CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q,
38577841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
38677841947SLeila Ghaffari     CeedOperatorSetField(op, "dv", ceed_data->elem_restr_q, ceed_data->basis_q,
38777841947SLeila Ghaffari                          CEED_VECTOR_ACTIVE);
38877841947SLeila Ghaffari     user->op_ifunction_vol = op;
38977841947SLeila Ghaffari   }
39077841947SLeila Ghaffari 
39177841947SLeila Ghaffari   // *****************************************************************************
39277841947SLeila Ghaffari   // Set up CEED objects for the exterior domain (surface)
39377841947SLeila Ghaffari   // *****************************************************************************
39477841947SLeila Ghaffari   CeedInt height  = 1,
39577841947SLeila Ghaffari           dim_sur = dim - height,
39677841947SLeila Ghaffari           P_sur   = app_ctx->degree + 1,
39777841947SLeila Ghaffari           Q_sur   = P_sur + app_ctx->q_extra;
39877841947SLeila Ghaffari   const CeedInt q_data_size_sur = problem->q_data_size_sur;
39977841947SLeila Ghaffari 
40077841947SLeila Ghaffari   // -----------------------------------------------------------------------------
40177841947SLeila Ghaffari   // CEED Bases
40277841947SLeila Ghaffari   // -----------------------------------------------------------------------------
40377841947SLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim_sur, num_comp_q, P_sur, Q_sur,
40477841947SLeila Ghaffari                                   CEED_GAUSS, &ceed_data->basis_q_sur);
40577841947SLeila Ghaffari   CeedBasisCreateTensorH1Lagrange(ceed, dim_sur, num_comp_x, 2, Q_sur, CEED_GAUSS,
40677841947SLeila Ghaffari                                   &ceed_data->basis_x_sur);
40777841947SLeila Ghaffari 
40877841947SLeila Ghaffari   // -----------------------------------------------------------------------------
40977841947SLeila Ghaffari   // CEED QFunctions
41077841947SLeila Ghaffari   // -----------------------------------------------------------------------------
41177841947SLeila Ghaffari   // -- Create QFunction for quadrature data
41277841947SLeila Ghaffari   CeedQFunctionCreateInterior(ceed, 1, problem->setup_sur, problem->setup_sur_loc,
41377841947SLeila Ghaffari                               &ceed_data->qf_setup_sur);
41477841947SLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_sur, "dx", num_comp_x*dim_sur,
41577841947SLeila Ghaffari                         CEED_EVAL_GRAD);
41677841947SLeila Ghaffari   CeedQFunctionAddInput(ceed_data->qf_setup_sur, "weight", 1, CEED_EVAL_WEIGHT);
417a61c78d6SJeremy L Thompson   CeedQFunctionAddOutput(ceed_data->qf_setup_sur, "surface qdata",
4182fe7aee7SLeila Ghaffari                          q_data_size_sur, CEED_EVAL_NONE);
41977841947SLeila Ghaffari 
4202fe7aee7SLeila Ghaffari   // -- Creat QFunction for inflow boundaries
4212fe7aee7SLeila Ghaffari   if (problem->apply_inflow) {
4222fe7aee7SLeila Ghaffari     CeedQFunctionCreateInterior(ceed, 1, problem->apply_inflow,
4232fe7aee7SLeila Ghaffari                                 problem->apply_inflow_loc, &ceed_data->qf_apply_inflow);
4242fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "q", num_comp_q,
42577841947SLeila Ghaffari                           CEED_EVAL_INTERP);
4262fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "surface qdata",
4272fe7aee7SLeila Ghaffari                           q_data_size_sur, CEED_EVAL_NONE);
4282fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "x", num_comp_x,
42977841947SLeila Ghaffari                           CEED_EVAL_INTERP);
4302fe7aee7SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_apply_inflow, "v", num_comp_q,
4312fe7aee7SLeila Ghaffari                            CEED_EVAL_INTERP);
4322fe7aee7SLeila Ghaffari   }
4332fe7aee7SLeila Ghaffari 
4342fe7aee7SLeila Ghaffari   // -- Creat QFunction for outflow boundaries
4352fe7aee7SLeila Ghaffari   if (problem->apply_outflow) {
4362fe7aee7SLeila Ghaffari     CeedQFunctionCreateInterior(ceed, 1, problem->apply_outflow,
4372fe7aee7SLeila Ghaffari                                 problem->apply_outflow_loc, &ceed_data->qf_apply_outflow);
4382fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "q", num_comp_q,
4392fe7aee7SLeila Ghaffari                           CEED_EVAL_INTERP);
4402fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "surface qdata",
4412fe7aee7SLeila Ghaffari                           q_data_size_sur, CEED_EVAL_NONE);
4422fe7aee7SLeila Ghaffari     CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "x", num_comp_x,
4432fe7aee7SLeila Ghaffari                           CEED_EVAL_INTERP);
4442fe7aee7SLeila Ghaffari     CeedQFunctionAddOutput(ceed_data->qf_apply_outflow, "v", num_comp_q,
44577841947SLeila Ghaffari                            CEED_EVAL_INTERP);
44677841947SLeila Ghaffari   }
44777841947SLeila Ghaffari 
44877841947SLeila Ghaffari   // *****************************************************************************
44977841947SLeila Ghaffari   // CEED Operator Apply
45077841947SLeila Ghaffari   // *****************************************************************************
45177841947SLeila Ghaffari   // -- Apply CEED Operator for the geometric data
45277841947SLeila Ghaffari   CeedOperatorApply(ceed_data->op_setup_vol, ceed_data->x_coord,
45377841947SLeila Ghaffari                     ceed_data->q_data, CEED_REQUEST_IMMEDIATE);
45477841947SLeila Ghaffari 
45577841947SLeila Ghaffari   // -- Create and apply CEED Composite Operator for the entire domain
45677841947SLeila Ghaffari   if (!user->phys->implicit) { // RHS
45777841947SLeila Ghaffari     ierr = CreateOperatorForDomain(ceed, dm, bc, ceed_data, user->phys,
45877841947SLeila Ghaffari                                    user->op_rhs_vol, height, P_sur, Q_sur,
45977841947SLeila Ghaffari                                    q_data_size_sur, &user->op_rhs); CHKERRQ(ierr);
46077841947SLeila Ghaffari   } else { // IFunction
46177841947SLeila Ghaffari     ierr = CreateOperatorForDomain(ceed, dm, bc, ceed_data, user->phys,
46277841947SLeila Ghaffari                                    user->op_ifunction_vol, height, P_sur, Q_sur,
46377841947SLeila Ghaffari                                    q_data_size_sur, &user->op_ifunction); CHKERRQ(ierr);
46477841947SLeila Ghaffari   }
46577841947SLeila Ghaffari 
46677841947SLeila Ghaffari   PetscFunctionReturn(0);
46777841947SLeila Ghaffari }
468