1 // Copyright (c) 2017-2022, Lawrence Livermore National Security, LLC and other CEED contributors. 2 // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 3 // 4 // SPDX-License-Identifier: BSD-2-Clause 5 // 6 // This file is part of CEED: http://github.com/ceed 7 8 /// @file 9 /// Setup libCEED for Navier-Stokes example using PETSc 10 11 #include "../navierstokes.h" 12 13 // Utility function - essential BC dofs are encoded in closure indices as -(i+1). 14 PetscInt Involute(PetscInt i) { 15 return i >= 0 ? i : -(i+1); 16 } 17 18 // Utility function to create local CEED restriction 19 PetscErrorCode CreateRestrictionFromPlex(Ceed ceed, DM dm, CeedInt height, 20 DMLabel domain_label, CeedInt value, CeedElemRestriction *elem_restr) { 21 PetscInt num_elem, elem_size, num_dof, num_comp, *elem_restr_offsets; 22 PetscErrorCode ierr; 23 24 PetscFunctionBeginUser; 25 ierr = DMPlexGetLocalOffsets(dm, domain_label, value, height, 0, &num_elem, 26 &elem_size, &num_comp, &num_dof, &elem_restr_offsets); 27 CHKERRQ(ierr); 28 29 CeedElemRestrictionCreate(ceed, num_elem, elem_size, num_comp, 30 1, num_dof, CEED_MEM_HOST, CEED_COPY_VALUES, 31 elem_restr_offsets, elem_restr); 32 ierr = PetscFree(elem_restr_offsets); CHKERRQ(ierr); 33 34 PetscFunctionReturn(0); 35 } 36 37 // Utility function to get Ceed Restriction for each domain 38 PetscErrorCode GetRestrictionForDomain(Ceed ceed, DM dm, CeedInt height, 39 DMLabel domain_label, PetscInt value, 40 CeedInt Q, CeedInt q_data_size, 41 CeedElemRestriction *elem_restr_q, 42 CeedElemRestriction *elem_restr_x, 43 CeedElemRestriction *elem_restr_qd_i) { 44 DM dm_coord; 45 CeedInt dim, loc_num_elem; 46 CeedInt Q_dim; 47 CeedElemRestriction elem_restr_tmp; 48 PetscErrorCode ierr; 49 PetscFunctionBeginUser; 50 51 ierr = DMGetDimension(dm, &dim); CHKERRQ(ierr); 52 dim -= height; 53 Q_dim = CeedIntPow(Q, dim); 54 ierr = CreateRestrictionFromPlex(ceed, dm, height, domain_label, value, 55 &elem_restr_tmp); 56 CHKERRQ(ierr); 57 if (elem_restr_q) *elem_restr_q = elem_restr_tmp; 58 if (elem_restr_x) { 59 ierr = DMGetCoordinateDM(dm, &dm_coord); CHKERRQ(ierr); 60 ierr = DMPlexSetClosurePermutationTensor(dm_coord, PETSC_DETERMINE, NULL); 61 CHKERRQ(ierr); 62 ierr = CreateRestrictionFromPlex(ceed, dm_coord, height, domain_label, value, 63 elem_restr_x); 64 CHKERRQ(ierr); 65 } 66 if (elem_restr_qd_i) { 67 CeedElemRestrictionGetNumElements(elem_restr_tmp, &loc_num_elem); 68 CeedElemRestrictionCreateStrided(ceed, loc_num_elem, Q_dim, 69 q_data_size, q_data_size*loc_num_elem*Q_dim, 70 CEED_STRIDES_BACKEND, elem_restr_qd_i); 71 } 72 if (!elem_restr_q) CeedElemRestrictionDestroy(&elem_restr_tmp); 73 PetscFunctionReturn(0); 74 } 75 76 // Utility function to create CEED Composite Operator for the entire domain 77 PetscErrorCode CreateOperatorForDomain(Ceed ceed, DM dm, SimpleBC bc, 78 CeedData ceed_data, Physics phys, 79 CeedOperator op_apply_vol, 80 CeedOperator op_apply_ijacobian_vol, 81 CeedInt height, 82 CeedInt P_sur, CeedInt Q_sur, 83 CeedInt q_data_size_sur, CeedInt jac_data_size_sur, 84 CeedOperator *op_apply, CeedOperator *op_apply_ijacobian) { 85 //CeedInt dim; 86 DMLabel domain_label; 87 PetscErrorCode ierr; 88 PetscFunctionBeginUser; 89 90 // Create Composite Operaters 91 CeedCompositeOperatorCreate(ceed, op_apply); 92 if (op_apply_ijacobian) 93 CeedCompositeOperatorCreate(ceed, op_apply_ijacobian); 94 95 // --Apply Sub-Operator for the volume 96 CeedCompositeOperatorAddSub(*op_apply, op_apply_vol); 97 if (op_apply_ijacobian) 98 CeedCompositeOperatorAddSub(*op_apply_ijacobian, op_apply_ijacobian_vol); 99 100 // -- Create Sub-Operator for in/outflow BCs 101 if (phys->has_neumann || 1) { 102 // --- Setup 103 ierr = DMGetLabel(dm, "Face Sets", &domain_label); CHKERRQ(ierr); 104 //ierr = DMGetDimension(dm, &dim); CHKERRQ(ierr); 105 106 // --- Get number of quadrature points for the boundaries 107 CeedInt num_qpts_sur; 108 CeedBasisGetNumQuadraturePoints(ceed_data->basis_q_sur, &num_qpts_sur); 109 110 // --- Create Sub-Operator for inflow boundaries 111 for (CeedInt i=0; i < bc->num_inflow; i++) { 112 CeedVector q_data_sur; 113 CeedOperator op_setup_sur, op_apply_inflow, 114 op_apply_inflow_jacobian = NULL; 115 CeedElemRestriction elem_restr_x_sur, elem_restr_q_sur, elem_restr_qd_i_sur; 116 117 // ---- CEED Restriction 118 ierr = GetRestrictionForDomain(ceed, dm, height, domain_label, bc->inflows[i], 119 Q_sur, q_data_size_sur, &elem_restr_q_sur, &elem_restr_x_sur, 120 &elem_restr_qd_i_sur); 121 CHKERRQ(ierr); 122 123 // ---- CEED Vector 124 PetscInt loc_num_elem_sur; 125 CeedElemRestrictionGetNumElements(elem_restr_q_sur, &loc_num_elem_sur); 126 CeedVectorCreate(ceed, q_data_size_sur*loc_num_elem_sur*num_qpts_sur, 127 &q_data_sur); 128 129 // ---- CEED Operator 130 // ----- CEED Operator for Setup (geometric factors) 131 CeedOperatorCreate(ceed, ceed_data->qf_setup_sur, NULL, NULL, &op_setup_sur); 132 CeedOperatorSetField(op_setup_sur, "dx", elem_restr_x_sur, 133 ceed_data->basis_x_sur, CEED_VECTOR_ACTIVE); 134 CeedOperatorSetField(op_setup_sur, "weight", CEED_ELEMRESTRICTION_NONE, 135 ceed_data->basis_x_sur, CEED_VECTOR_NONE); 136 CeedOperatorSetField(op_setup_sur, "surface qdata", elem_restr_qd_i_sur, 137 CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE); 138 139 // ----- CEED Operator for Physics 140 CeedOperatorCreate(ceed, ceed_data->qf_apply_inflow, NULL, NULL, 141 &op_apply_inflow); 142 CeedOperatorSetField(op_apply_inflow, "q", elem_restr_q_sur, 143 ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE); 144 CeedOperatorSetField(op_apply_inflow, "surface qdata", elem_restr_qd_i_sur, 145 CEED_BASIS_COLLOCATED, q_data_sur); 146 CeedOperatorSetField(op_apply_inflow, "x", elem_restr_x_sur, 147 ceed_data->basis_x_sur, ceed_data->x_coord); 148 CeedOperatorSetField(op_apply_inflow, "v", elem_restr_q_sur, 149 ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE); 150 151 if (ceed_data->qf_apply_inflow_jacobian) { 152 CeedOperatorCreate(ceed, ceed_data->qf_apply_inflow_jacobian, NULL, NULL, 153 &op_apply_inflow_jacobian); 154 CeedOperatorSetField(op_apply_inflow_jacobian, "dq", elem_restr_q_sur, 155 ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE); 156 CeedOperatorSetField(op_apply_inflow_jacobian, "surface qdata", 157 elem_restr_qd_i_sur, 158 CEED_BASIS_COLLOCATED, q_data_sur); 159 CeedOperatorSetField(op_apply_inflow_jacobian, "x", elem_restr_x_sur, 160 ceed_data->basis_x_sur, ceed_data->x_coord); 161 CeedOperatorSetField(op_apply_inflow_jacobian, "v", elem_restr_q_sur, 162 ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE); 163 } 164 165 // ----- Apply CEED operator for Setup 166 CeedOperatorApply(op_setup_sur, ceed_data->x_coord, q_data_sur, 167 CEED_REQUEST_IMMEDIATE); 168 169 // ----- Apply Sub-Operator for Physics 170 CeedCompositeOperatorAddSub(*op_apply, op_apply_inflow); 171 if (op_apply_ijacobian) 172 CeedCompositeOperatorAddSub(*op_apply_ijacobian, op_apply_inflow_jacobian); 173 174 // ----- Cleanup 175 CeedVectorDestroy(&q_data_sur); 176 CeedElemRestrictionDestroy(&elem_restr_q_sur); 177 CeedElemRestrictionDestroy(&elem_restr_x_sur); 178 CeedElemRestrictionDestroy(&elem_restr_qd_i_sur); 179 CeedOperatorDestroy(&op_setup_sur); 180 CeedOperatorDestroy(&op_apply_inflow); 181 CeedOperatorDestroy(&op_apply_inflow_jacobian); 182 } 183 184 // --- Create Sub-Operator for outflow boundaries 185 for (CeedInt i=0; i < bc->num_outflow; i++) { 186 CeedVector q_data_sur, jac_data_sur; 187 CeedOperator op_setup_sur, op_apply_outflow, 188 op_apply_outflow_jacobian = NULL; 189 CeedElemRestriction elem_restr_x_sur, elem_restr_q_sur, elem_restr_qd_i_sur, 190 elem_restr_jd_i_sur; 191 192 // ---- CEED Restriction 193 ierr = GetRestrictionForDomain(ceed, dm, height, domain_label, bc->outflows[i], 194 Q_sur, q_data_size_sur, &elem_restr_q_sur, &elem_restr_x_sur, 195 &elem_restr_qd_i_sur); 196 CHKERRQ(ierr); 197 ierr = GetRestrictionForDomain(ceed, dm, height, domain_label, bc->outflows[i], 198 Q_sur, jac_data_size_sur, NULL, NULL, 199 &elem_restr_jd_i_sur); 200 CHKERRQ(ierr); 201 202 // ---- CEED Vector 203 PetscInt loc_num_elem_sur; 204 CeedElemRestrictionGetNumElements(elem_restr_q_sur, &loc_num_elem_sur); 205 CeedVectorCreate(ceed, q_data_size_sur*loc_num_elem_sur*num_qpts_sur, 206 &q_data_sur); 207 208 CeedElemRestrictionCreateVector(elem_restr_jd_i_sur, &jac_data_sur, NULL); 209 210 // ---- CEED Operator 211 // ----- CEED Operator for Setup (geometric factors) 212 CeedOperatorCreate(ceed, ceed_data->qf_setup_sur, NULL, NULL, &op_setup_sur); 213 CeedOperatorSetField(op_setup_sur, "dx", elem_restr_x_sur, 214 ceed_data->basis_x_sur, CEED_VECTOR_ACTIVE); 215 CeedOperatorSetField(op_setup_sur, "weight", CEED_ELEMRESTRICTION_NONE, 216 ceed_data->basis_x_sur, CEED_VECTOR_NONE); 217 CeedOperatorSetField(op_setup_sur, "surface qdata", elem_restr_qd_i_sur, 218 CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE); 219 220 // ----- CEED Operator for Physics 221 CeedOperatorCreate(ceed, ceed_data->qf_apply_outflow, NULL, NULL, 222 &op_apply_outflow); 223 CeedOperatorSetField(op_apply_outflow, "q", elem_restr_q_sur, 224 ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE); 225 CeedOperatorSetField(op_apply_outflow, "surface qdata", elem_restr_qd_i_sur, 226 CEED_BASIS_COLLOCATED, q_data_sur); 227 CeedOperatorSetField(op_apply_outflow, "x", elem_restr_x_sur, 228 ceed_data->basis_x_sur, ceed_data->x_coord); 229 CeedOperatorSetField(op_apply_outflow, "v", elem_restr_q_sur, 230 ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE); 231 CeedOperatorSetField(op_apply_outflow, "surface jacobian data", 232 elem_restr_jd_i_sur, 233 CEED_BASIS_COLLOCATED, jac_data_sur); 234 235 if (ceed_data->qf_apply_outflow_jacobian) { 236 CeedOperatorCreate(ceed, ceed_data->qf_apply_outflow_jacobian, NULL, NULL, 237 &op_apply_outflow_jacobian); 238 CeedOperatorSetField(op_apply_outflow_jacobian, "dq", elem_restr_q_sur, 239 ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE); 240 CeedOperatorSetField(op_apply_outflow_jacobian, "surface qdata", 241 elem_restr_qd_i_sur, 242 CEED_BASIS_COLLOCATED, q_data_sur); 243 CeedOperatorSetField(op_apply_outflow_jacobian, "surface jacobian data", 244 elem_restr_jd_i_sur, 245 CEED_BASIS_COLLOCATED, jac_data_sur); 246 CeedOperatorSetField(op_apply_outflow_jacobian, "v", elem_restr_q_sur, 247 ceed_data->basis_q_sur, CEED_VECTOR_ACTIVE); 248 } 249 250 // ----- Apply CEED operator for Setup 251 CeedOperatorApply(op_setup_sur, ceed_data->x_coord, q_data_sur, 252 CEED_REQUEST_IMMEDIATE); 253 254 // ----- Apply Sub-Operator for Physics 255 CeedCompositeOperatorAddSub(*op_apply, op_apply_outflow); 256 if (op_apply_ijacobian) 257 CeedCompositeOperatorAddSub(*op_apply_ijacobian, op_apply_outflow_jacobian); 258 259 // ----- Cleanup 260 CeedVectorDestroy(&q_data_sur); 261 CeedVectorDestroy(&jac_data_sur); 262 CeedElemRestrictionDestroy(&elem_restr_q_sur); 263 CeedElemRestrictionDestroy(&elem_restr_x_sur); 264 CeedElemRestrictionDestroy(&elem_restr_qd_i_sur); 265 CeedElemRestrictionDestroy(&elem_restr_jd_i_sur); 266 CeedOperatorDestroy(&op_setup_sur); 267 CeedOperatorDestroy(&op_apply_outflow); 268 CeedOperatorDestroy(&op_apply_outflow_jacobian); 269 } 270 } 271 272 // ----- Get Context Labels for Operator 273 CeedOperatorContextGetFieldLabel(*op_apply, "solution time", 274 &phys->solution_time_label); 275 CeedOperatorContextGetFieldLabel(*op_apply, "timestep size", 276 &phys->timestep_size_label); 277 278 PetscFunctionReturn(0); 279 } 280 281 PetscErrorCode SetupLibceed(Ceed ceed, CeedData ceed_data, DM dm, User user, 282 AppCtx app_ctx, ProblemData *problem, SimpleBC bc) { 283 PetscErrorCode ierr; 284 PetscFunctionBeginUser; 285 286 // ***************************************************************************** 287 // Set up CEED objects for the interior domain (volume) 288 // ***************************************************************************** 289 const PetscInt num_comp_q = 5; 290 const CeedInt dim = problem->dim, 291 num_comp_x = problem->dim, 292 q_data_size_vol = problem->q_data_size_vol, 293 jac_data_size_vol = num_comp_q + 6 + 3, 294 P = app_ctx->degree + 1, 295 Q = P + app_ctx->q_extra; 296 CeedElemRestriction elem_restr_jd_i; 297 CeedVector jac_data; 298 299 // ----------------------------------------------------------------------------- 300 // CEED Bases 301 // ----------------------------------------------------------------------------- 302 CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_q, P, Q, CEED_GAUSS, 303 &ceed_data->basis_q); 304 CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_x, 2, Q, CEED_GAUSS, 305 &ceed_data->basis_x); 306 CeedBasisCreateTensorH1Lagrange(ceed, dim, num_comp_x, 2, P, 307 CEED_GAUSS_LOBATTO, &ceed_data->basis_xc); 308 309 // ----------------------------------------------------------------------------- 310 // CEED Restrictions 311 // ----------------------------------------------------------------------------- 312 // -- Create restriction 313 ierr = GetRestrictionForDomain(ceed, dm, 0, 0, 0, Q, q_data_size_vol, 314 &ceed_data->elem_restr_q, &ceed_data->elem_restr_x, 315 &ceed_data->elem_restr_qd_i); CHKERRQ(ierr); 316 317 ierr = GetRestrictionForDomain(ceed, dm, 0, 0, 0, Q, jac_data_size_vol, 318 NULL, NULL, 319 &elem_restr_jd_i); CHKERRQ(ierr); 320 // -- Create E vectors 321 CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->q_ceed, NULL); 322 CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->q_dot_ceed, 323 NULL); 324 CeedElemRestrictionCreateVector(ceed_data->elem_restr_q, &user->g_ceed, NULL); 325 326 // ----------------------------------------------------------------------------- 327 // CEED QFunctions 328 // ----------------------------------------------------------------------------- 329 // -- Create QFunction for quadrature data 330 CeedQFunctionCreateInterior(ceed, 1, problem->setup_vol.qfunction, 331 problem->setup_vol.qfunction_loc, 332 &ceed_data->qf_setup_vol); 333 if (problem->setup_vol.qfunction_context) { 334 CeedQFunctionSetContext(ceed_data->qf_setup_vol, 335 problem->setup_vol.qfunction_context); 336 CeedQFunctionContextDestroy(&problem->setup_vol.qfunction_context); 337 } 338 CeedQFunctionAddInput(ceed_data->qf_setup_vol, "dx", num_comp_x*dim, 339 CEED_EVAL_GRAD); 340 CeedQFunctionAddInput(ceed_data->qf_setup_vol, "weight", 1, CEED_EVAL_WEIGHT); 341 CeedQFunctionAddOutput(ceed_data->qf_setup_vol, "qdata", q_data_size_vol, 342 CEED_EVAL_NONE); 343 344 // -- Create QFunction for ICs 345 CeedQFunctionCreateInterior(ceed, 1, problem->ics.qfunction, 346 problem->ics.qfunction_loc, 347 &ceed_data->qf_ics); 348 CeedQFunctionSetContext(ceed_data->qf_ics, problem->ics.qfunction_context); 349 CeedQFunctionContextDestroy(&problem->ics.qfunction_context); 350 CeedQFunctionAddInput(ceed_data->qf_ics, "x", num_comp_x, CEED_EVAL_INTERP); 351 CeedQFunctionAddOutput(ceed_data->qf_ics, "q0", num_comp_q, CEED_EVAL_NONE); 352 353 // -- Create QFunction for RHS 354 if (problem->apply_vol_rhs.qfunction) { 355 CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_rhs.qfunction, 356 problem->apply_vol_rhs.qfunction_loc, &ceed_data->qf_rhs_vol); 357 CeedQFunctionSetContext(ceed_data->qf_rhs_vol, 358 problem->apply_vol_rhs.qfunction_context); 359 CeedQFunctionContextDestroy(&problem->apply_vol_rhs.qfunction_context); 360 CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "q", num_comp_q, CEED_EVAL_INTERP); 361 CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "Grad_q", num_comp_q*dim, 362 CEED_EVAL_GRAD); 363 CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "qdata", q_data_size_vol, 364 CEED_EVAL_NONE); 365 CeedQFunctionAddInput(ceed_data->qf_rhs_vol, "x", num_comp_x, CEED_EVAL_INTERP); 366 CeedQFunctionAddOutput(ceed_data->qf_rhs_vol, "v", num_comp_q, 367 CEED_EVAL_INTERP); 368 CeedQFunctionAddOutput(ceed_data->qf_rhs_vol, "Grad_v", num_comp_q*dim, 369 CEED_EVAL_GRAD); 370 } 371 372 // -- Create QFunction for IFunction 373 if (problem->apply_vol_ifunction.qfunction) { 374 CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_ifunction.qfunction, 375 problem->apply_vol_ifunction.qfunction_loc, &ceed_data->qf_ifunction_vol); 376 CeedQFunctionSetContext(ceed_data->qf_ifunction_vol, 377 problem->apply_vol_ifunction.qfunction_context); 378 CeedQFunctionContextDestroy(&problem->apply_vol_ifunction.qfunction_context); 379 CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "q", num_comp_q, 380 CEED_EVAL_INTERP); 381 CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "Grad_q", num_comp_q*dim, 382 CEED_EVAL_GRAD); 383 CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "q dot", num_comp_q, 384 CEED_EVAL_INTERP); 385 CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "qdata", q_data_size_vol, 386 CEED_EVAL_NONE); 387 CeedQFunctionAddInput(ceed_data->qf_ifunction_vol, "x", num_comp_x, 388 CEED_EVAL_INTERP); 389 CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "v", num_comp_q, 390 CEED_EVAL_INTERP); 391 CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "Grad_v", num_comp_q*dim, 392 CEED_EVAL_GRAD); 393 CeedQFunctionAddOutput(ceed_data->qf_ifunction_vol, "jac_data", 394 jac_data_size_vol, CEED_EVAL_NONE); 395 } 396 397 CeedQFunction qf_ijacobian_vol = NULL; 398 if (problem->apply_vol_ijacobian.qfunction) { 399 CeedQFunctionCreateInterior(ceed, 1, problem->apply_vol_ijacobian.qfunction, 400 problem->apply_vol_ijacobian.qfunction_loc, &qf_ijacobian_vol); 401 CeedQFunctionSetContext(qf_ijacobian_vol, 402 problem->apply_vol_ijacobian.qfunction_context); 403 CeedQFunctionContextDestroy(&problem->apply_vol_ijacobian.qfunction_context); 404 CeedQFunctionAddInput(qf_ijacobian_vol, "dq", num_comp_q, 405 CEED_EVAL_INTERP); 406 CeedQFunctionAddInput(qf_ijacobian_vol, "Grad_dq", num_comp_q*dim, 407 CEED_EVAL_GRAD); 408 CeedQFunctionAddInput(qf_ijacobian_vol, "qdata", q_data_size_vol, 409 CEED_EVAL_NONE); 410 CeedQFunctionAddInput(qf_ijacobian_vol, "x", num_comp_x, 411 CEED_EVAL_INTERP); 412 CeedQFunctionAddInput(qf_ijacobian_vol, "jac_data", 413 jac_data_size_vol, CEED_EVAL_NONE); 414 CeedQFunctionAddOutput(qf_ijacobian_vol, "v", num_comp_q, 415 CEED_EVAL_INTERP); 416 CeedQFunctionAddOutput(qf_ijacobian_vol, "Grad_v", num_comp_q*dim, 417 CEED_EVAL_GRAD); 418 } 419 420 // --------------------------------------------------------------------------- 421 // Element coordinates 422 // --------------------------------------------------------------------------- 423 // -- Create CEED vector 424 CeedElemRestrictionCreateVector(ceed_data->elem_restr_x, &ceed_data->x_coord, 425 NULL); 426 427 // -- Copy PETSc vector in CEED vector 428 Vec X_loc; 429 const PetscScalar *X_loc_array; 430 ierr = DMGetCoordinatesLocal(dm, &X_loc); CHKERRQ(ierr); 431 ierr = VecScale(X_loc, problem->dm_scale); CHKERRQ(ierr); 432 ierr = VecGetArrayRead(X_loc, &X_loc_array); CHKERRQ(ierr); 433 CeedVectorSetArray(ceed_data->x_coord, CEED_MEM_HOST, CEED_COPY_VALUES, 434 (PetscScalar *)X_loc_array); 435 ierr = VecRestoreArrayRead(X_loc, &X_loc_array); CHKERRQ(ierr); 436 437 // ----------------------------------------------------------------------------- 438 // CEED vectors 439 // ----------------------------------------------------------------------------- 440 // -- Create CEED vector for geometric data 441 CeedInt num_qpts_vol; 442 PetscInt loc_num_elem_vol; 443 CeedBasisGetNumQuadraturePoints(ceed_data->basis_q, &num_qpts_vol); 444 CeedElemRestrictionGetNumElements(ceed_data->elem_restr_q, &loc_num_elem_vol); 445 CeedVectorCreate(ceed, q_data_size_vol*loc_num_elem_vol*num_qpts_vol, 446 &ceed_data->q_data); 447 448 CeedElemRestrictionCreateVector(elem_restr_jd_i, &jac_data, NULL); 449 // ----------------------------------------------------------------------------- 450 // CEED Operators 451 // ----------------------------------------------------------------------------- 452 // -- Create CEED operator for quadrature data 453 CeedOperatorCreate(ceed, ceed_data->qf_setup_vol, NULL, NULL, 454 &ceed_data->op_setup_vol); 455 CeedOperatorSetField(ceed_data->op_setup_vol, "dx", ceed_data->elem_restr_x, 456 ceed_data->basis_x, CEED_VECTOR_ACTIVE); 457 CeedOperatorSetField(ceed_data->op_setup_vol, "weight", 458 CEED_ELEMRESTRICTION_NONE, ceed_data->basis_x, CEED_VECTOR_NONE); 459 CeedOperatorSetField(ceed_data->op_setup_vol, "qdata", 460 ceed_data->elem_restr_qd_i, CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE); 461 462 // -- Create CEED operator for ICs 463 CeedOperatorCreate(ceed, ceed_data->qf_ics, NULL, NULL, &ceed_data->op_ics); 464 CeedOperatorSetField(ceed_data->op_ics, "x", ceed_data->elem_restr_x, 465 ceed_data->basis_xc, CEED_VECTOR_ACTIVE); 466 CeedOperatorSetField(ceed_data->op_ics, "q0", ceed_data->elem_restr_q, 467 CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE); 468 CeedOperatorContextGetFieldLabel(ceed_data->op_ics, "evaluation time", 469 &user->phys->ics_time_label); 470 471 // Create CEED operator for RHS 472 if (ceed_data->qf_rhs_vol) { 473 CeedOperator op; 474 CeedOperatorCreate(ceed, ceed_data->qf_rhs_vol, NULL, NULL, &op); 475 CeedOperatorSetField(op, "q", ceed_data->elem_restr_q, ceed_data->basis_q, 476 CEED_VECTOR_ACTIVE); 477 CeedOperatorSetField(op, "Grad_q", ceed_data->elem_restr_q, ceed_data->basis_q, 478 CEED_VECTOR_ACTIVE); 479 CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i, 480 CEED_BASIS_COLLOCATED, ceed_data->q_data); 481 CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x, 482 ceed_data->x_coord); 483 CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q, 484 CEED_VECTOR_ACTIVE); 485 CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q, 486 CEED_VECTOR_ACTIVE); 487 user->op_rhs_vol = op; 488 } 489 490 // -- CEED operator for IFunction 491 if (ceed_data->qf_ifunction_vol) { 492 CeedOperator op; 493 CeedOperatorCreate(ceed, ceed_data->qf_ifunction_vol, NULL, NULL, &op); 494 CeedOperatorSetField(op, "q", ceed_data->elem_restr_q, ceed_data->basis_q, 495 CEED_VECTOR_ACTIVE); 496 CeedOperatorSetField(op, "Grad_q", ceed_data->elem_restr_q, ceed_data->basis_q, 497 CEED_VECTOR_ACTIVE); 498 CeedOperatorSetField(op, "q dot", ceed_data->elem_restr_q, ceed_data->basis_q, 499 user->q_dot_ceed); 500 CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i, 501 CEED_BASIS_COLLOCATED, ceed_data->q_data); 502 CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x, 503 ceed_data->x_coord); 504 CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q, 505 CEED_VECTOR_ACTIVE); 506 CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q, 507 CEED_VECTOR_ACTIVE); 508 CeedOperatorSetField(op, "jac_data", elem_restr_jd_i, 509 CEED_BASIS_COLLOCATED, jac_data); 510 511 user->op_ifunction_vol = op; 512 } 513 514 CeedOperator op_ijacobian_vol = NULL; 515 if (qf_ijacobian_vol) { 516 CeedOperator op; 517 CeedOperatorCreate(ceed, qf_ijacobian_vol, NULL, NULL, &op); 518 CeedOperatorSetField(op, "dq", ceed_data->elem_restr_q, ceed_data->basis_q, 519 CEED_VECTOR_ACTIVE); 520 CeedOperatorSetField(op, "Grad_dq", ceed_data->elem_restr_q, ceed_data->basis_q, 521 CEED_VECTOR_ACTIVE); 522 CeedOperatorSetField(op, "qdata", ceed_data->elem_restr_qd_i, 523 CEED_BASIS_COLLOCATED, ceed_data->q_data); 524 CeedOperatorSetField(op, "x", ceed_data->elem_restr_x, ceed_data->basis_x, 525 ceed_data->x_coord); 526 CeedOperatorSetField(op, "jac_data", elem_restr_jd_i, 527 CEED_BASIS_COLLOCATED, jac_data); 528 CeedOperatorSetField(op, "v", ceed_data->elem_restr_q, ceed_data->basis_q, 529 CEED_VECTOR_ACTIVE); 530 CeedOperatorSetField(op, "Grad_v", ceed_data->elem_restr_q, ceed_data->basis_q, 531 CEED_VECTOR_ACTIVE); 532 op_ijacobian_vol = op; 533 CeedQFunctionDestroy(&qf_ijacobian_vol); 534 } 535 536 // ***************************************************************************** 537 // Set up CEED objects for the exterior domain (surface) 538 // ***************************************************************************** 539 CeedInt height = 1, 540 dim_sur = dim - height, 541 P_sur = app_ctx->degree + 1, 542 Q_sur = P_sur + app_ctx->q_extra; 543 const CeedInt q_data_size_sur = problem->q_data_size_sur, 544 jac_data_size_sur = problem->jac_data_size_sur; 545 546 // ----------------------------------------------------------------------------- 547 // CEED Bases 548 // ----------------------------------------------------------------------------- 549 CeedBasisCreateTensorH1Lagrange(ceed, dim_sur, num_comp_q, P_sur, Q_sur, 550 CEED_GAUSS, &ceed_data->basis_q_sur); 551 CeedBasisCreateTensorH1Lagrange(ceed, dim_sur, num_comp_x, 2, Q_sur, CEED_GAUSS, 552 &ceed_data->basis_x_sur); 553 554 // ----------------------------------------------------------------------------- 555 // CEED QFunctions 556 // ----------------------------------------------------------------------------- 557 // -- Create QFunction for quadrature data 558 CeedQFunctionCreateInterior(ceed, 1, problem->setup_sur.qfunction, 559 problem->setup_sur.qfunction_loc, 560 &ceed_data->qf_setup_sur); 561 if (problem->setup_sur.qfunction_context) { 562 CeedQFunctionSetContext(ceed_data->qf_setup_sur, 563 problem->setup_sur.qfunction_context); 564 CeedQFunctionContextDestroy(&problem->setup_sur.qfunction_context); 565 } 566 CeedQFunctionAddInput(ceed_data->qf_setup_sur, "dx", num_comp_x*dim_sur, 567 CEED_EVAL_GRAD); 568 CeedQFunctionAddInput(ceed_data->qf_setup_sur, "weight", 1, CEED_EVAL_WEIGHT); 569 CeedQFunctionAddOutput(ceed_data->qf_setup_sur, "surface qdata", 570 q_data_size_sur, CEED_EVAL_NONE); 571 572 // -- Creat QFunction for inflow boundaries 573 if (problem->apply_inflow.qfunction) { 574 CeedQFunctionCreateInterior(ceed, 1, problem->apply_inflow.qfunction, 575 problem->apply_inflow.qfunction_loc, &ceed_data->qf_apply_inflow); 576 CeedQFunctionSetContext(ceed_data->qf_apply_inflow, 577 problem->apply_inflow.qfunction_context); 578 CeedQFunctionContextDestroy(&problem->apply_inflow.qfunction_context); 579 CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "q", num_comp_q, 580 CEED_EVAL_INTERP); 581 CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "surface qdata", 582 q_data_size_sur, CEED_EVAL_NONE); 583 CeedQFunctionAddInput(ceed_data->qf_apply_inflow, "x", num_comp_x, 584 CEED_EVAL_INTERP); 585 CeedQFunctionAddOutput(ceed_data->qf_apply_inflow, "v", num_comp_q, 586 CEED_EVAL_INTERP); 587 } 588 if (problem->apply_inflow_jacobian.qfunction) { 589 CeedQFunctionCreateInterior(ceed, 1, problem->apply_inflow_jacobian.qfunction, 590 problem->apply_inflow_jacobian.qfunction_loc, 591 &ceed_data->qf_apply_inflow_jacobian); 592 CeedQFunctionSetContext(ceed_data->qf_apply_inflow_jacobian, 593 problem->apply_inflow_jacobian.qfunction_context); 594 CeedQFunctionContextDestroy(&problem->apply_inflow_jacobian.qfunction_context); 595 CeedQFunctionAddInput(ceed_data->qf_apply_inflow_jacobian, "dq", num_comp_q, 596 CEED_EVAL_INTERP); 597 CeedQFunctionAddInput(ceed_data->qf_apply_inflow_jacobian, "surface qdata", 598 q_data_size_sur, CEED_EVAL_NONE); 599 CeedQFunctionAddInput(ceed_data->qf_apply_inflow_jacobian, "x", num_comp_x, 600 CEED_EVAL_INTERP); 601 CeedQFunctionAddOutput(ceed_data->qf_apply_inflow_jacobian, "v", num_comp_q, 602 CEED_EVAL_INTERP); 603 } 604 605 // -- Creat QFunction for outflow boundaries 606 if (problem->apply_outflow.qfunction) { 607 CeedQFunctionCreateInterior(ceed, 1, problem->apply_outflow.qfunction, 608 problem->apply_outflow.qfunction_loc, &ceed_data->qf_apply_outflow); 609 CeedQFunctionSetContext(ceed_data->qf_apply_outflow, 610 problem->apply_outflow.qfunction_context); 611 CeedQFunctionContextDestroy(&problem->apply_outflow.qfunction_context); 612 CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "q", num_comp_q, 613 CEED_EVAL_INTERP); 614 CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "surface qdata", 615 q_data_size_sur, CEED_EVAL_NONE); 616 CeedQFunctionAddInput(ceed_data->qf_apply_outflow, "x", num_comp_x, 617 CEED_EVAL_INTERP); 618 CeedQFunctionAddOutput(ceed_data->qf_apply_outflow, "v", num_comp_q, 619 CEED_EVAL_INTERP); 620 CeedQFunctionAddOutput(ceed_data->qf_apply_outflow, "surface jacobian data", 621 jac_data_size_sur, 622 CEED_EVAL_NONE); 623 } 624 if (problem->apply_outflow_jacobian.qfunction) { 625 CeedQFunctionCreateInterior(ceed, 1, problem->apply_outflow_jacobian.qfunction, 626 problem->apply_outflow_jacobian.qfunction_loc, 627 &ceed_data->qf_apply_outflow_jacobian); 628 CeedQFunctionSetContext(ceed_data->qf_apply_outflow_jacobian, 629 problem->apply_outflow_jacobian.qfunction_context); 630 CeedQFunctionContextDestroy(&problem->apply_outflow_jacobian.qfunction_context); 631 CeedQFunctionAddInput(ceed_data->qf_apply_outflow_jacobian, "dq", num_comp_q, 632 CEED_EVAL_INTERP); 633 CeedQFunctionAddInput(ceed_data->qf_apply_outflow_jacobian, "surface qdata", 634 q_data_size_sur, CEED_EVAL_NONE); 635 CeedQFunctionAddInput(ceed_data->qf_apply_outflow_jacobian, 636 "surface jacobian data", 637 jac_data_size_sur, CEED_EVAL_NONE); 638 CeedQFunctionAddOutput(ceed_data->qf_apply_outflow_jacobian, "v", num_comp_q, 639 CEED_EVAL_INTERP); 640 } 641 642 // ***************************************************************************** 643 // CEED Operator Apply 644 // ***************************************************************************** 645 // -- Apply CEED Operator for the geometric data 646 CeedOperatorApply(ceed_data->op_setup_vol, ceed_data->x_coord, 647 ceed_data->q_data, CEED_REQUEST_IMMEDIATE); 648 649 // -- Create and apply CEED Composite Operator for the entire domain 650 if (!user->phys->implicit) { // RHS 651 ierr = CreateOperatorForDomain(ceed, dm, bc, ceed_data, user->phys, 652 user->op_rhs_vol, NULL, height, P_sur, Q_sur, 653 q_data_size_sur, 0, 654 &user->op_rhs, NULL); CHKERRQ(ierr); 655 } else { // IFunction 656 ierr = CreateOperatorForDomain(ceed, dm, bc, ceed_data, user->phys, 657 user->op_ifunction_vol, op_ijacobian_vol, 658 height, P_sur, Q_sur, 659 q_data_size_sur, jac_data_size_sur, 660 &user->op_ifunction, 661 op_ijacobian_vol ? &user->op_ijacobian : NULL); CHKERRQ(ierr); 662 if (user->op_ijacobian) { 663 CeedOperatorContextGetFieldLabel(user->op_ijacobian, "ijacobian time shift", 664 &user->phys->ijacobian_time_shift_label); 665 } 666 667 } 668 CeedElemRestrictionDestroy(&elem_restr_jd_i); 669 CeedVectorDestroy(&jac_data); 670 PetscFunctionReturn(0); 671 } 672