xref: /libCEED/examples/petsc/bps.c (revision 53a0f73b9e9b3ec22617891b299d2321a34a84fc)
1 // Copyright (c) 2017, Lawrence Livermore National Security, LLC. Produced at
2 // the Lawrence Livermore National Laboratory. LLNL-CODE-734707. All Rights
3 // reserved. See files LICENSE and NOTICE for details.
4 //
5 // This file is part of CEED, a collection of benchmarks, miniapps, software
6 // libraries and APIs for efficient high-order finite element and spectral
7 // element discretizations for exascale applications. For more information and
8 // source code availability see http://github.com/ceed.
9 //
10 // The CEED research is supported by the Exascale Computing Project 17-SC-20-SC,
11 // a collaborative effort of two U.S. Department of Energy organizations (Office
12 // of Science and the National Nuclear Security Administration) responsible for
13 // the planning and preparation of a capable exascale ecosystem, including
14 // software, applications, hardware, advanced system engineering and early
15 // testbed platforms, in support of the nation's exascale computing imperative.
16 
17 //                        libCEED + PETSc Example: CEED BPs
18 //
19 // This example demonstrates a simple usage of libCEED with PETSc to solve the
20 // CEED BP benchmark problems, see http://ceed.exascaleproject.org/bps.
21 //
22 // The code uses higher level communication protocols in DMPlex.
23 //
24 // Build with:
25 //
26 //     make bps [PETSC_DIR=</path/to/petsc>] [CEED_DIR=</path/to/libceed>]
27 //
28 // Sample runs:
29 //
30 //     ./bps -problem bp1 -degree 3
31 //     ./bps -problem bp2 -ceed /cpu/self -degree 3
32 //     ./bps -problem bp3 -ceed /gpu/occa -degree 3
33 //     ./bps -problem bp4 -ceed /cpu/occa -degree 3
34 //     ./bps -problem bp5 -ceed /omp/occa -degree 3
35 //     ./bps -problem bp6 -ceed /ocl/occa -degree 3
36 //
37 //TESTARGS -ceed {ceed_resource} -test -problem bp5 -degree 3
38 
39 /// @file
40 /// CEED BPs example using PETSc with DMPlex
41 /// See bpsraw.c for a "raw" implementation using a structured grid.
42 const char help[] = "Solve CEED BPs using PETSc with DMPlex\n";
43 
44 #include <stdbool.h>
45 #include <string.h>
46 #include <petscksp.h>
47 #include <petscdmplex.h>
48 #include <ceed.h>
49 #include "setup.h"
50 
51 // -----------------------------------------------------------------------------
52 // Utilities
53 // -----------------------------------------------------------------------------
54 
55 // Utility function, compute three factors of an integer
56 static void Split3(PetscInt size, PetscInt m[3], bool reverse) {
57   for (PetscInt d=0,sizeleft=size; d<3; d++) {
58     PetscInt try = (PetscInt)PetscCeilReal(PetscPowReal(sizeleft, 1./(3 - d)));
59     while (try * (sizeleft / try) != sizeleft) try++;
60     m[reverse ? 2-d : d] = try;
61     sizeleft /= try;
62   }
63 }
64 
65 static int Max3(const PetscInt a[3]) {
66   return PetscMax(a[0], PetscMax(a[1], a[2]));
67 }
68 
69 static int Min3(const PetscInt a[3]) {
70   return PetscMin(a[0], PetscMin(a[1], a[2]));
71 }
72 
73 // -----------------------------------------------------------------------------
74 // Parameter structure for running problems
75 // -----------------------------------------------------------------------------
76 typedef struct RunParams_ *RunParams;
77 struct RunParams_ {
78   MPI_Comm comm;
79   PetscBool test_mode, benchmark_mode, read_mesh, userlnodes, setmemtyperequest,
80             petschavecuda, write_solution;
81   char *filename, *ceedresource, *hostname;
82   PetscInt localnodes, degree, qextra, dim, ncompu, *melem;
83   PetscMPIInt rankspernode;
84   bpType bpchoice;
85   CeedMemType memtyperequested;
86   PetscLogStage solvestage;
87 };
88 
89 // -----------------------------------------------------------------------------
90 // Main body of program, called in a loop for performance benchmarking purposes
91 // -----------------------------------------------------------------------------
92 
93 static PetscErrorCode Run(RunParams rp) {
94   PetscInt ierr;
95   double my_rt_start, my_rt, rt_min, rt_max;
96   PetscInt xlsize, lsize, gsize;
97   PetscScalar *r;
98   Vec X, Xloc, rhs, rhsloc;
99   Mat matO;
100   KSP ksp;
101   DM  dm;
102   UserO userO;
103   Ceed ceed;
104   CeedData ceeddata;
105   CeedQFunction qferror;
106   CeedOperator operror;
107   CeedVector rhsceed, target;
108 
109   PetscFunctionBeginUser;
110   // Setup DM
111   if (rp->read_mesh) {
112     ierr = DMPlexCreateFromFile(PETSC_COMM_WORLD, rp->filename, PETSC_TRUE, &dm);
113     CHKERRQ(ierr);
114   } else {
115     if (rp->userlnodes) {
116       // Find a nicely composite number of elements no less than global nodes
117       PetscMPIInt size;
118       ierr = MPI_Comm_size(rp->comm, &size); CHKERRQ(ierr);
119       for (PetscInt gelem =
120              PetscMax(1, size * rp->localnodes / PetscPowInt(rp->degree, rp->dim));
121            ;
122            gelem++) {
123         Split3(gelem, rp->melem, true);
124         if (Max3(rp->melem) / Min3(rp->melem) <= 2) break;
125       }
126     }
127     ierr = DMPlexCreateBoxMesh(PETSC_COMM_WORLD, rp->dim, PETSC_FALSE, rp->melem,
128                                NULL, NULL, NULL, PETSC_TRUE, &dm); CHKERRQ(ierr);
129   }
130 
131   {
132     DM dmDist = NULL;
133     PetscPartitioner part;
134 
135     ierr = DMPlexGetPartitioner(dm, &part); CHKERRQ(ierr);
136     ierr = PetscPartitionerSetFromOptions(part); CHKERRQ(ierr);
137     ierr = DMPlexDistribute(dm, 0, NULL, &dmDist); CHKERRQ(ierr);
138     if (dmDist) {
139       ierr = DMDestroy(&dm); CHKERRQ(ierr);
140       dm  = dmDist;
141     }
142   }
143 
144   // Set up libCEED
145   CeedInit(rp->ceedresource, &ceed);
146   CeedMemType memtypebackend;
147   CeedGetPreferredMemType(ceed, &memtypebackend);
148 
149   // Check memtype compatibility
150   if (!rp->setmemtyperequest)
151     rp->memtyperequested = memtypebackend;
152   else if (!rp->petschavecuda && rp->memtyperequested == CEED_MEM_DEVICE)
153     SETERRQ1(PETSC_COMM_WORLD, PETSC_ERR_SUP_SYS,
154              "PETSc was not built with CUDA. "
155              "Requested MemType CEED_MEM_DEVICE is not supported.", NULL);
156 
157   // Create DM
158   ierr = SetupDMByDegree(dm, rp->degree, rp->ncompu, rp->bpchoice);
159   CHKERRQ(ierr);
160 
161   // Create vectors
162   if (rp->memtyperequested == CEED_MEM_DEVICE) {
163     ierr = DMSetVecType(dm, VECCUDA); CHKERRQ(ierr);
164   }
165   ierr = DMCreateGlobalVector(dm, &X); CHKERRQ(ierr);
166   ierr = VecGetLocalSize(X, &lsize); CHKERRQ(ierr);
167   ierr = VecGetSize(X, &gsize); CHKERRQ(ierr);
168   ierr = DMCreateLocalVector(dm, &Xloc); CHKERRQ(ierr);
169   ierr = VecGetSize(Xloc, &xlsize); CHKERRQ(ierr);
170   ierr = VecDuplicate(X, &rhs); CHKERRQ(ierr);
171 
172   // Operator
173   ierr = PetscMalloc1(1, &userO); CHKERRQ(ierr);
174   ierr = MatCreateShell(rp->comm, lsize, lsize, gsize, gsize,
175                         userO, &matO); CHKERRQ(ierr);
176   ierr = MatShellSetOperation(matO, MATOP_MULT,
177                               (void(*)(void))MatMult_Ceed); CHKERRQ(ierr);
178   ierr = MatShellSetOperation(matO, MATOP_GET_DIAGONAL,
179                               (void(*)(void))MatGetDiag); CHKERRQ(ierr);
180   if (rp->memtyperequested == CEED_MEM_DEVICE) {
181     ierr = MatShellSetVecType(matO, VECCUDA); CHKERRQ(ierr);
182   }
183 
184   // Print summary
185   if (!rp->test_mode) {
186     PetscInt P = rp->degree + 1, Q = P + rp->qextra;
187 
188     const char *usedresource;
189     CeedGetResource(ceed, &usedresource);
190 
191     VecType vectype;
192     ierr = VecGetType(X, &vectype); CHKERRQ(ierr);
193 
194     PetscInt cStart, cEnd;
195     ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd); CHKERRQ(ierr);
196     PetscMPIInt comm_size;
197     ierr = MPI_Comm_size(rp->comm, &comm_size); CHKERRQ(ierr);
198     ierr = PetscPrintf(rp->comm,
199                        "\n-- CEED Benchmark Problem %d -- libCEED + PETSc --\n"
200                        "  MPI:\n"
201                        "    Hostname                           : %s\n"
202                        "    Total ranks                        : %d\n"
203                        "    Ranks per compute node             : %d\n"
204                        "  PETSc:\n"
205                        "    PETSc Vec Type                     : %s\n"
206                        "  libCEED:\n"
207                        "    libCEED Backend                    : %s\n"
208                        "    libCEED Backend MemType            : %s\n"
209                        "    libCEED User Requested MemType     : %s\n"
210                        "  Mesh:\n"
211                        "    Number of 1D Basis Nodes (P)       : %d\n"
212                        "    Number of 1D Quadrature Points (Q) : %d\n"
213                        "    Global nodes                       : %D\n"
214                        "    Local Elements                     : %D\n"
215                        "    Owned nodes                        : %D\n"
216                        "    DoF per node                       : %D\n",
217                        rp->bpchoice+1,
218                        rp->hostname,
219                        comm_size, rp->rankspernode,
220                        vectype, usedresource,
221                        CeedMemTypes[memtypebackend],
222                        (rp->setmemtyperequest) ?
223                        CeedMemTypes[rp->memtyperequested] : "none",
224                        P, Q, gsize/rp->ncompu, cEnd - cStart, lsize/rp->ncompu,
225                        rp->ncompu);
226     CHKERRQ(ierr);
227   }
228 
229   // Create RHS vector
230   ierr = VecDuplicate(Xloc, &rhsloc); CHKERRQ(ierr);
231   ierr = VecZeroEntries(rhsloc); CHKERRQ(ierr);
232   if (rp->memtyperequested == CEED_MEM_HOST) {
233     ierr = VecGetArray(rhsloc, &r); CHKERRQ(ierr);
234   } else {
235     ierr = VecCUDAGetArray(rhsloc, &r); CHKERRQ(ierr);
236   }
237   CeedVectorCreate(ceed, xlsize, &rhsceed);
238   CeedVectorSetArray(rhsceed, rp->memtyperequested, CEED_USE_POINTER, r);
239 
240   ierr = PetscMalloc1(1, &ceeddata); CHKERRQ(ierr);
241   ierr = SetupLibceedByDegree(dm, ceed, rp->degree, rp->dim, rp->qextra,
242                               rp->ncompu, gsize, xlsize, rp->bpchoice, ceeddata,
243                               true, rhsceed, &target); CHKERRQ(ierr);
244 
245   // Gather RHS
246   CeedVectorSyncArray(rhsceed, rp->memtyperequested);
247   if (rp->memtyperequested == CEED_MEM_HOST) {
248     ierr = VecRestoreArray(rhsloc, &r); CHKERRQ(ierr);
249   } else {
250     ierr = VecCUDARestoreArray(rhsloc, &r); CHKERRQ(ierr);
251   }
252   ierr = VecZeroEntries(rhs); CHKERRQ(ierr);
253   ierr = DMLocalToGlobalBegin(dm, rhsloc, ADD_VALUES, rhs); CHKERRQ(ierr);
254   ierr = DMLocalToGlobalEnd(dm, rhsloc, ADD_VALUES, rhs); CHKERRQ(ierr);
255   CeedVectorDestroy(&rhsceed);
256 
257   // Create the error Q-function
258   CeedQFunctionCreateInterior(ceed, 1, bpOptions[rp->bpchoice].error,
259                               bpOptions[rp->bpchoice].errorfname, &qferror);
260   CeedQFunctionAddInput(qferror, "u", rp->ncompu, CEED_EVAL_INTERP);
261   CeedQFunctionAddInput(qferror, "true_soln", rp->ncompu, CEED_EVAL_NONE);
262   CeedQFunctionAddOutput(qferror, "error", rp->ncompu, CEED_EVAL_NONE);
263 
264   // Create the error operator
265   CeedOperatorCreate(ceed, qferror, CEED_QFUNCTION_NONE, CEED_QFUNCTION_NONE,
266                      &operror);
267   CeedOperatorSetField(operror, "u", ceeddata->Erestrictu,
268                        ceeddata->basisu, CEED_VECTOR_ACTIVE);
269   CeedOperatorSetField(operror, "true_soln", ceeddata->Erestrictui,
270                        CEED_BASIS_COLLOCATED, target);
271   CeedOperatorSetField(operror, "error", ceeddata->Erestrictui,
272                        CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
273 
274   // Set up Mat
275   userO->comm = rp->comm;
276   userO->dm = dm;
277   userO->Xloc = Xloc;
278   ierr = VecDuplicate(Xloc, &userO->Yloc); CHKERRQ(ierr);
279   userO->xceed = ceeddata->xceed;
280   userO->yceed = ceeddata->yceed;
281   userO->op = ceeddata->opapply;
282   userO->ceed = ceed;
283   userO->memtype = rp->memtyperequested;
284   if (rp->memtyperequested == CEED_MEM_HOST) {
285     userO->VecGetArray = VecGetArray;
286     userO->VecGetArrayRead = VecGetArrayRead;
287     userO->VecRestoreArray = VecRestoreArray;
288     userO->VecRestoreArrayRead = VecRestoreArrayRead;
289   } else {
290     userO->VecGetArray = VecCUDAGetArray;
291     userO->VecGetArrayRead = VecCUDAGetArrayRead;
292     userO->VecRestoreArray = VecCUDARestoreArray;
293     userO->VecRestoreArrayRead = VecCUDARestoreArrayRead;
294   }
295 
296   ierr = KSPCreate(rp->comm, &ksp); CHKERRQ(ierr);
297   {
298     PC pc;
299     ierr = KSPGetPC(ksp, &pc); CHKERRQ(ierr);
300     if (rp->bpchoice == CEED_BP1 || rp->bpchoice == CEED_BP2) {
301       ierr = PCSetType(pc, PCJACOBI); CHKERRQ(ierr);
302       ierr = PCJacobiSetType(pc, PC_JACOBI_ROWSUM); CHKERRQ(ierr);
303     } else {
304       ierr = PCSetType(pc, PCNONE); CHKERRQ(ierr);
305     }
306     ierr = KSPSetType(ksp, KSPCG); CHKERRQ(ierr);
307     ierr = KSPSetNormType(ksp, KSP_NORM_NATURAL); CHKERRQ(ierr);
308     ierr = KSPSetTolerances(ksp, 1e-10, PETSC_DEFAULT, PETSC_DEFAULT,
309                             PETSC_DEFAULT); CHKERRQ(ierr);
310   }
311   ierr = KSPSetOperators(ksp, matO, matO); CHKERRQ(ierr);
312 
313   // First run, if benchmarking
314   if (rp->benchmark_mode) {
315     ierr = KSPSetTolerances(ksp, 1e-10, PETSC_DEFAULT, PETSC_DEFAULT, 1);
316     CHKERRQ(ierr);
317     my_rt_start = MPI_Wtime();
318     ierr = KSPSolve(ksp, rhs, X); CHKERRQ(ierr);
319     my_rt = MPI_Wtime() - my_rt_start;
320     ierr = MPI_Allreduce(MPI_IN_PLACE, &my_rt, 1, MPI_DOUBLE, MPI_MIN, rp->comm);
321     CHKERRQ(ierr);
322     // Set maxits based on first iteration timing
323     if (my_rt > 0.02) {
324       ierr = KSPSetTolerances(ksp, 1e-10, PETSC_DEFAULT, PETSC_DEFAULT, 5);
325       CHKERRQ(ierr);
326     } else {
327       ierr = KSPSetTolerances(ksp, 1e-10, PETSC_DEFAULT, PETSC_DEFAULT, 20);
328       CHKERRQ(ierr);
329     }
330   }
331   ierr = KSPSetFromOptions(ksp); CHKERRQ(ierr);
332 
333   // Timed solve
334   ierr = VecZeroEntries(X); CHKERRQ(ierr);
335   ierr = PetscBarrier((PetscObject)ksp); CHKERRQ(ierr);
336 
337   // -- Performance logging
338   ierr = PetscLogStagePush(rp->solvestage); CHKERRQ(ierr);
339 
340   // -- Solve
341   my_rt_start = MPI_Wtime();
342   ierr = KSPSolve(ksp, rhs, X); CHKERRQ(ierr);
343   my_rt = MPI_Wtime() - my_rt_start;
344 
345   // -- Performance logging
346   ierr = PetscLogStagePop();
347 
348   // Output results
349   {
350     KSPType ksptype;
351     KSPConvergedReason reason;
352     PetscReal rnorm;
353     PetscInt its;
354     ierr = KSPGetType(ksp, &ksptype); CHKERRQ(ierr);
355     ierr = KSPGetConvergedReason(ksp, &reason); CHKERRQ(ierr);
356     ierr = KSPGetIterationNumber(ksp, &its); CHKERRQ(ierr);
357     ierr = KSPGetResidualNorm(ksp, &rnorm); CHKERRQ(ierr);
358     if (!rp->test_mode || reason < 0 || rnorm > 1e-8) {
359       ierr = PetscPrintf(rp->comm,
360                          "  KSP:\n"
361                          "    KSP Type                           : %s\n"
362                          "    KSP Convergence                    : %s\n"
363                          "    Total KSP Iterations               : %D\n"
364                          "    Final rnorm                        : %e\n",
365                          ksptype, KSPConvergedReasons[reason], its,
366                          (double)rnorm); CHKERRQ(ierr);
367     }
368     if (!rp->test_mode) {
369       ierr = PetscPrintf(rp->comm,"  Performance:\n"); CHKERRQ(ierr);
370     }
371     {
372       PetscReal maxerror;
373       ierr = ComputeErrorMax(userO, operror, X, target, &maxerror);
374       CHKERRQ(ierr);
375       PetscReal tol = 5e-2;
376       if (!rp->test_mode || maxerror > tol) {
377         ierr = MPI_Allreduce(&my_rt, &rt_min, 1, MPI_DOUBLE, MPI_MIN, rp->comm);
378         CHKERRQ(ierr);
379         ierr = MPI_Allreduce(&my_rt, &rt_max, 1, MPI_DOUBLE, MPI_MAX, rp->comm);
380         CHKERRQ(ierr);
381         ierr = PetscPrintf(rp->comm,
382                            "    Pointwise Error (max)              : %e\n"
383                            "    CG Solve Time                      : %g (%g) sec\n",
384                            (double)maxerror, rt_max, rt_min); CHKERRQ(ierr);
385       }
386     }
387     if (rp->benchmark_mode && (!rp->test_mode)) {
388       ierr = PetscPrintf(rp->comm,
389                          "    DoFs/Sec in CG                     : %g (%g) million\n",
390                          1e-6*gsize*its/rt_max,
391                          1e-6*gsize*its/rt_min); CHKERRQ(ierr);
392     }
393   }
394 
395   if (rp->write_solution) {
396     PetscViewer vtkviewersoln;
397 
398     ierr = PetscViewerCreate(rp->comm, &vtkviewersoln); CHKERRQ(ierr);
399     ierr = PetscViewerSetType(vtkviewersoln, PETSCVIEWERVTK); CHKERRQ(ierr);
400     ierr = PetscViewerFileSetName(vtkviewersoln, "solution.vtk"); CHKERRQ(ierr);
401     ierr = VecView(X, vtkviewersoln); CHKERRQ(ierr);
402     ierr = PetscViewerDestroy(&vtkviewersoln); CHKERRQ(ierr);
403   }
404 
405   // Cleanup
406   ierr = VecDestroy(&X); CHKERRQ(ierr);
407   ierr = VecDestroy(&Xloc); CHKERRQ(ierr);
408   ierr = VecDestroy(&userO->Yloc); CHKERRQ(ierr);
409   ierr = MatDestroy(&matO); CHKERRQ(ierr);
410   ierr = PetscFree(userO); CHKERRQ(ierr);
411   ierr = CeedDataDestroy(0, ceeddata); CHKERRQ(ierr);
412   ierr = DMDestroy(&dm); CHKERRQ(ierr);
413 
414   ierr = VecDestroy(&rhs); CHKERRQ(ierr);
415   ierr = VecDestroy(&rhsloc); CHKERRQ(ierr);
416   ierr = KSPDestroy(&ksp); CHKERRQ(ierr);
417   CeedVectorDestroy(&target);
418   CeedQFunctionDestroy(&qferror);
419   CeedOperatorDestroy(&operror);
420   CeedDestroy(&ceed);
421   PetscFunctionReturn(0);
422 }
423 
424 int main(int argc, char **argv) {
425   PetscInt ierr, commsize;
426   RunParams rp;
427   MPI_Comm comm;
428   PetscLogStage solvestage;
429   char filename[PETSC_MAX_PATH_LEN];
430   char ceedresource[PETSC_MAX_PATH_LEN] = "/cpu/self";
431   char hostname[PETSC_MAX_PATH_LEN];
432 
433   PetscInt qextra, dim = 3, melem[3] = {3, 3, 3}, ncompu = 1;
434   PetscInt num_degrees = 30, degree[30] = {}, num_localnodes = 2, localnodes[2] = {};
435   PetscMPIInt rankspernode;
436   PetscBool test_mode, benchmark_mode, read_mesh, write_solution,
437             userlnodes = PETSC_FALSE, degree_set;
438   CeedMemType memtyperequested;
439   bpType bpchoice;
440 
441   // Check PETSc CUDA support
442   PetscBool petschavecuda, setmemtyperequest = PETSC_FALSE;
443   // *INDENT-OFF*
444   #ifdef PETSC_HAVE_CUDA
445   petschavecuda = PETSC_TRUE;
446   #else
447   petschavecuda = PETSC_FALSE;
448   #endif
449   // *INDENT-ON*
450 
451   // Initialize PETSc
452   ierr = PetscInitialize(&argc, &argv, NULL, help);
453   if (ierr) return ierr;
454   comm = PETSC_COMM_WORLD;
455   ierr = MPI_Comm_size(comm, &commsize);
456   if (ierr != MPI_SUCCESS) return ierr;
457   #if defined(PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY)
458   {
459     MPI_Comm splitcomm;
460     ierr = MPI_Comm_split_type(comm, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL,
461                                &splitcomm);
462     CHKERRQ(ierr);
463     ierr = MPI_Comm_size(splitcomm, &rankspernode); CHKERRQ(ierr);
464     ierr = MPI_Comm_free(&splitcomm); CHKERRQ(ierr);
465   }
466   #else
467   rankspernode = -1; // Unknown
468   #endif
469 
470   // Read command line options
471   ierr = PetscOptionsBegin(comm, NULL, "CEED BPs in PETSc", NULL);
472   CHKERRQ(ierr);
473   bpchoice = CEED_BP1;
474   ierr = PetscOptionsEnum("-problem", "CEED benchmark problem to solve", NULL,
475                           bpTypes, (PetscEnum)bpchoice, (PetscEnum *)&bpchoice,
476                           NULL); CHKERRQ(ierr);
477   ncompu = bpOptions[bpchoice].ncompu;
478   test_mode = PETSC_FALSE;
479   ierr = PetscOptionsBool("-test",
480                           "Testing mode (do not print unless error is large)",
481                           NULL, test_mode, &test_mode, NULL); CHKERRQ(ierr);
482   benchmark_mode = PETSC_FALSE;
483   ierr = PetscOptionsBool("-benchmark",
484                           "Benchmarking mode (prints benchmark statistics)",
485                           NULL, benchmark_mode, &benchmark_mode, NULL);
486   CHKERRQ(ierr);
487   write_solution = PETSC_FALSE;
488   ierr = PetscOptionsBool("-write_solution", "Write solution for visualization",
489                           NULL, write_solution, &write_solution, NULL);
490   CHKERRQ(ierr);
491   degree[0] = test_mode ? 3 : 2;
492   ierr = PetscOptionsIntArray("-degree",
493                               "Polynomial degree of tensor product basis", NULL,
494                               degree, &num_degrees, &degree_set); CHKERRQ(ierr);
495   if (!degree_set)
496     num_degrees = 1;
497   qextra = bpOptions[bpchoice].qextra;
498   ierr = PetscOptionsInt("-qextra", "Number of extra quadrature points", NULL,
499                          qextra, &qextra, NULL); CHKERRQ(ierr);
500   ierr = PetscOptionsString("-ceed", "CEED resource specifier", NULL,
501                             ceedresource,
502                             ceedresource, sizeof(ceedresource), NULL); CHKERRQ(ierr);
503   ierr = PetscGetHostName(hostname, sizeof hostname); CHKERRQ(ierr);
504   ierr = PetscOptionsString("-hostname", "Hostname for output", NULL, hostname,
505                             hostname, sizeof(hostname), NULL); CHKERRQ(ierr);
506   read_mesh = PETSC_FALSE;
507   ierr = PetscOptionsString("-mesh", "Read mesh from file", NULL, filename,
508                             filename, sizeof(filename), &read_mesh);
509   CHKERRQ(ierr);
510   if (!read_mesh) {
511     PetscInt tmp = dim;
512     ierr = PetscOptionsIntArray("-cells", "Number of cells per dimension", NULL,
513                                 melem, &tmp, NULL); CHKERRQ(ierr);
514   }
515   memtyperequested = petschavecuda ? CEED_MEM_DEVICE : CEED_MEM_HOST;
516   ierr = PetscOptionsEnum("-memtype", "CEED MemType requested", NULL, memTypes,
517                           (PetscEnum)memtyperequested,
518                           (PetscEnum *)&memtyperequested, &setmemtyperequest);
519   CHKERRQ(ierr);
520   localnodes[0] = 1000;
521   ierr = PetscOptionsIntArray("-local_nodes",
522                               "Target number of locally owned nodes per "
523                               "process (single value or min,max)",
524                               NULL, localnodes, &num_localnodes, &userlnodes);
525   CHKERRQ(ierr);
526   if (num_localnodes < 2)
527     localnodes[1] = 2 * localnodes[0];
528   if (benchmark_mode && !degree_set) {
529     PetscInt maxdegree = 8;
530     ierr = PetscOptionsInt("-max_degree", "Max degree to run in benchmark mode",
531                            NULL, maxdegree, &maxdegree, NULL);
532     CHKERRQ(ierr);
533     for (PetscInt i = 0; i < maxdegree; i++)
534       degree[i] = i + 1;
535     num_degrees = maxdegree;
536   }
537   {
538     PetscBool flg;
539     PetscInt p = rankspernode;
540     ierr = PetscOptionsInt("-p", "Number of MPI ranks per node", NULL,
541                            p, &p, &flg);
542     CHKERRQ(ierr);
543     if (flg) rankspernode = p;
544   }
545 
546   ierr = PetscOptionsEnd();
547   CHKERRQ(ierr);
548 
549   // Register PETSc logging stage
550   ierr = PetscLogStageRegister("Solve Stage", &solvestage);
551   CHKERRQ(ierr);
552 
553   // Setup all parameters needed in Run()
554   ierr = PetscMalloc1(1, &rp);
555   CHKERRQ(ierr);
556   rp->comm = comm;
557   rp->test_mode = test_mode;
558   rp->benchmark_mode = benchmark_mode;
559   rp->read_mesh = read_mesh;
560   rp->userlnodes = userlnodes;
561   rp->setmemtyperequest = setmemtyperequest;
562   rp->petschavecuda = petschavecuda;
563   rp->write_solution = write_solution;
564   rp->filename = filename;
565   rp->ceedresource = ceedresource;
566   rp->hostname = hostname;
567   rp->qextra = qextra;
568   rp->dim = dim;
569   rp->ncompu = ncompu;
570   rp->melem = melem;
571   rp->bpchoice = bpchoice;
572   rp->memtyperequested = memtyperequested;
573   rp->solvestage = solvestage;
574   rp->rankspernode = rankspernode;
575 
576   for (PetscInt d = 0; d < num_degrees; d++) {
577     PetscInt deg = degree[d];
578     for (PetscInt n = localnodes[0]; n < localnodes[1]; n *= 2) {
579       rp->degree = deg;
580       rp->localnodes = n;
581       ierr = Run(rp); CHKERRQ(ierr);
582     }
583   }
584 
585   // Clear memory
586   ierr = PetscFree(rp); CHKERRQ(ierr);
587 
588   return PetscFinalize();
589 }
590