xref: /libCEED/examples/petsc/bps.c (revision c36f77d8e7ef5091b0d8d119bf1c986a392b3972)
1 // Copyright (c) 2017, Lawrence Livermore National Security, LLC. Produced at
2 // the Lawrence Livermore National Laboratory. LLNL-CODE-734707. All Rights
3 // reserved. See files LICENSE and NOTICE for details.
4 //
5 // This file is part of CEED, a collection of benchmarks, miniapps, software
6 // libraries and APIs for efficient high-order finite element and spectral
7 // element discretizations for exascale applications. For more information and
8 // source code availability see http://github.com/ceed.
9 //
10 // The CEED research is supported by the Exascale Computing Project 17-SC-20-SC,
11 // a collaborative effort of two U.S. Department of Energy organizations (Office
12 // of Science and the National Nuclear Security Administration) responsible for
13 // the planning and preparation of a capable exascale ecosystem, including
14 // software, applications, hardware, advanced system engineering and early
15 // testbed platforms, in support of the nation's exascale computing imperative.
16 
17 //                        libCEED + PETSc Example: CEED BPs
18 //
19 // This example demonstrates a simple usage of libCEED with PETSc to solve the
20 // CEED BP benchmark problems, see http://ceed.exascaleproject.org/bps.
21 //
22 // The code uses higher level communication protocols in DMPlex.
23 //
24 // Build with:
25 //
26 //     make bps [PETSC_DIR=</path/to/petsc>] [CEED_DIR=</path/to/libceed>]
27 //
28 // Sample runs:
29 //
30 //     ./bps -problem bp1 -degree 3
31 //     ./bps -problem bp2 -ceed /cpu/self -degree 3
32 //     ./bps -problem bp3 -ceed /gpu/occa -degree 3
33 //     ./bps -problem bp4 -ceed /cpu/occa -degree 3
34 //     ./bps -problem bp5 -ceed /omp/occa -degree 3
35 //     ./bps -problem bp6 -ceed /ocl/occa -degree 3
36 //
37 //TESTARGS -ceed {ceed_resource} -test -problem bp5 -degree 3
38 
39 /// @file
40 /// CEED BPs example using PETSc with DMPlex
41 /// See bpsraw.c for a "raw" implementation using a structured grid.
42 const char help[] = "Solve CEED BPs using PETSc with DMPlex\n";
43 
44 #include <stdbool.h>
45 #include <string.h>
46 #include <petscksp.h>
47 #include <petscdmplex.h>
48 #include <ceed.h>
49 #include "setup.h"
50 
51 // -----------------------------------------------------------------------------
52 // Utilities
53 // -----------------------------------------------------------------------------
54 
55 // Utility function, compute three factors of an integer
56 static void Split3(PetscInt size, PetscInt m[3], bool reverse) {
57   for (PetscInt d=0,sizeleft=size; d<3; d++) {
58     PetscInt try = (PetscInt)PetscCeilReal(PetscPowReal(sizeleft, 1./(3 - d)));
59     while (try * (sizeleft / try) != sizeleft) try++;
60     m[reverse ? 2-d : d] = try;
61     sizeleft /= try;
62   }
63 }
64 
65 static int Max3(const PetscInt a[3]) {
66   return PetscMax(a[0], PetscMax(a[1], a[2]));
67 }
68 
69 static int Min3(const PetscInt a[3]) {
70   return PetscMin(a[0], PetscMin(a[1], a[2]));
71 }
72 
73 // -----------------------------------------------------------------------------
74 // Parameter structure for running problems
75 // -----------------------------------------------------------------------------
76 typedef struct RunParams_ *RunParams;
77 struct RunParams_ {
78   MPI_Comm comm;
79   PetscBool test_mode, benchmark_mode, read_mesh, userlnodes, setmemtyperequest,
80             petschavecuda, write_solution;
81   char *filename, *ceedresource, *hostname;
82   PetscInt localnodes, degree, qextra, dim, ncompu, *melem;
83   PetscInt ksp_max_it_clip[2];
84   PetscMPIInt rankspernode;
85   bpType bpchoice;
86   CeedMemType memtyperequested;
87   PetscLogStage solvestage;
88 };
89 
90 // -----------------------------------------------------------------------------
91 // Main body of program, called in a loop for performance benchmarking purposes
92 // -----------------------------------------------------------------------------
93 
94 static PetscErrorCode Run(RunParams rp) {
95   PetscInt ierr;
96   double my_rt_start, my_rt, rt_min, rt_max;
97   PetscInt xlsize, lsize, gsize;
98   PetscScalar *r;
99   Vec X, Xloc, rhs, rhsloc;
100   Mat matO;
101   KSP ksp;
102   DM  dm;
103   UserO userO;
104   Ceed ceed;
105   CeedData ceeddata;
106   CeedQFunction qferror;
107   CeedOperator operror;
108   CeedVector rhsceed, target;
109 
110   PetscFunctionBeginUser;
111   // Setup DM
112   if (rp->read_mesh) {
113     ierr = DMPlexCreateFromFile(PETSC_COMM_WORLD, rp->filename, PETSC_TRUE, &dm);
114     CHKERRQ(ierr);
115   } else {
116     if (rp->userlnodes) {
117       // Find a nicely composite number of elements no less than global nodes
118       PetscMPIInt size;
119       ierr = MPI_Comm_size(rp->comm, &size); CHKERRQ(ierr);
120       for (PetscInt gelem =
121              PetscMax(1, size * rp->localnodes / PetscPowInt(rp->degree, rp->dim));
122            ;
123            gelem++) {
124         Split3(gelem, rp->melem, true);
125         if (Max3(rp->melem) / Min3(rp->melem) <= 2) break;
126       }
127     }
128     ierr = DMPlexCreateBoxMesh(PETSC_COMM_WORLD, rp->dim, PETSC_FALSE, rp->melem,
129                                NULL, NULL, NULL, PETSC_TRUE, &dm); CHKERRQ(ierr);
130   }
131 
132   {
133     DM dmDist = NULL;
134     PetscPartitioner part;
135 
136     ierr = DMPlexGetPartitioner(dm, &part); CHKERRQ(ierr);
137     ierr = PetscPartitionerSetFromOptions(part); CHKERRQ(ierr);
138     ierr = DMPlexDistribute(dm, 0, NULL, &dmDist); CHKERRQ(ierr);
139     if (dmDist) {
140       ierr = DMDestroy(&dm); CHKERRQ(ierr);
141       dm  = dmDist;
142     }
143   }
144 
145   // Set up libCEED
146   CeedInit(rp->ceedresource, &ceed);
147   CeedMemType memtypebackend;
148   CeedGetPreferredMemType(ceed, &memtypebackend);
149 
150   // Check memtype compatibility
151   if (!rp->setmemtyperequest)
152     rp->memtyperequested = memtypebackend;
153   else if (!rp->petschavecuda && rp->memtyperequested == CEED_MEM_DEVICE)
154     SETERRQ1(PETSC_COMM_WORLD, PETSC_ERR_SUP_SYS,
155              "PETSc was not built with CUDA. "
156              "Requested MemType CEED_MEM_DEVICE is not supported.", NULL);
157 
158   // Create DM
159   ierr = SetupDMByDegree(dm, rp->degree, rp->ncompu, rp->bpchoice);
160   CHKERRQ(ierr);
161 
162   // Create vectors
163   if (rp->memtyperequested == CEED_MEM_DEVICE) {
164     ierr = DMSetVecType(dm, VECCUDA); CHKERRQ(ierr);
165   }
166   ierr = DMCreateGlobalVector(dm, &X); CHKERRQ(ierr);
167   ierr = VecGetLocalSize(X, &lsize); CHKERRQ(ierr);
168   ierr = VecGetSize(X, &gsize); CHKERRQ(ierr);
169   ierr = DMCreateLocalVector(dm, &Xloc); CHKERRQ(ierr);
170   ierr = VecGetSize(Xloc, &xlsize); CHKERRQ(ierr);
171   ierr = VecDuplicate(X, &rhs); CHKERRQ(ierr);
172 
173   // Operator
174   ierr = PetscMalloc1(1, &userO); CHKERRQ(ierr);
175   ierr = MatCreateShell(rp->comm, lsize, lsize, gsize, gsize,
176                         userO, &matO); CHKERRQ(ierr);
177   ierr = MatShellSetOperation(matO, MATOP_MULT,
178                               (void(*)(void))MatMult_Ceed); CHKERRQ(ierr);
179   ierr = MatShellSetOperation(matO, MATOP_GET_DIAGONAL,
180                               (void(*)(void))MatGetDiag); CHKERRQ(ierr);
181   if (rp->memtyperequested == CEED_MEM_DEVICE) {
182     ierr = MatShellSetVecType(matO, VECCUDA); CHKERRQ(ierr);
183   }
184 
185   // Print summary
186   if (!rp->test_mode) {
187     PetscInt P = rp->degree + 1, Q = P + rp->qextra;
188 
189     const char *usedresource;
190     CeedGetResource(ceed, &usedresource);
191 
192     VecType vectype;
193     ierr = VecGetType(X, &vectype); CHKERRQ(ierr);
194 
195     PetscInt cStart, cEnd;
196     ierr = DMPlexGetHeightStratum(dm, 0, &cStart, &cEnd); CHKERRQ(ierr);
197     PetscMPIInt comm_size;
198     ierr = MPI_Comm_size(rp->comm, &comm_size); CHKERRQ(ierr);
199     ierr = PetscPrintf(rp->comm,
200                        "\n-- CEED Benchmark Problem %d -- libCEED + PETSc --\n"
201                        "  MPI:\n"
202                        "    Hostname                           : %s\n"
203                        "    Total ranks                        : %d\n"
204                        "    Ranks per compute node             : %d\n"
205                        "  PETSc:\n"
206                        "    PETSc Vec Type                     : %s\n"
207                        "  libCEED:\n"
208                        "    libCEED Backend                    : %s\n"
209                        "    libCEED Backend MemType            : %s\n"
210                        "    libCEED User Requested MemType     : %s\n"
211                        "  Mesh:\n"
212                        "    Number of 1D Basis Nodes (P)       : %d\n"
213                        "    Number of 1D Quadrature Points (Q) : %d\n"
214                        "    Global nodes                       : %D\n"
215                        "    Local Elements                     : %D\n"
216                        "    Owned nodes                        : %D\n"
217                        "    DoF per node                       : %D\n",
218                        rp->bpchoice+1,
219                        rp->hostname,
220                        comm_size, rp->rankspernode,
221                        vectype, usedresource,
222                        CeedMemTypes[memtypebackend],
223                        (rp->setmemtyperequest) ?
224                        CeedMemTypes[rp->memtyperequested] : "none",
225                        P, Q, gsize/rp->ncompu, cEnd - cStart, lsize/rp->ncompu,
226                        rp->ncompu);
227     CHKERRQ(ierr);
228   }
229 
230   // Create RHS vector
231   ierr = VecDuplicate(Xloc, &rhsloc); CHKERRQ(ierr);
232   ierr = VecZeroEntries(rhsloc); CHKERRQ(ierr);
233   if (rp->memtyperequested == CEED_MEM_HOST) {
234     ierr = VecGetArray(rhsloc, &r); CHKERRQ(ierr);
235   } else {
236     ierr = VecCUDAGetArray(rhsloc, &r); CHKERRQ(ierr);
237   }
238   CeedVectorCreate(ceed, xlsize, &rhsceed);
239   CeedVectorSetArray(rhsceed, rp->memtyperequested, CEED_USE_POINTER, r);
240 
241   ierr = PetscMalloc1(1, &ceeddata); CHKERRQ(ierr);
242   ierr = SetupLibceedByDegree(dm, ceed, rp->degree, rp->dim, rp->qextra,
243                               rp->ncompu, gsize, xlsize, rp->bpchoice, ceeddata,
244                               true, rhsceed, &target); CHKERRQ(ierr);
245 
246   // Gather RHS
247   CeedVectorSyncArray(rhsceed, rp->memtyperequested);
248   if (rp->memtyperequested == CEED_MEM_HOST) {
249     ierr = VecRestoreArray(rhsloc, &r); CHKERRQ(ierr);
250   } else {
251     ierr = VecCUDARestoreArray(rhsloc, &r); CHKERRQ(ierr);
252   }
253   ierr = VecZeroEntries(rhs); CHKERRQ(ierr);
254   ierr = DMLocalToGlobalBegin(dm, rhsloc, ADD_VALUES, rhs); CHKERRQ(ierr);
255   ierr = DMLocalToGlobalEnd(dm, rhsloc, ADD_VALUES, rhs); CHKERRQ(ierr);
256   CeedVectorDestroy(&rhsceed);
257 
258   // Create the error Q-function
259   CeedQFunctionCreateInterior(ceed, 1, bpOptions[rp->bpchoice].error,
260                               bpOptions[rp->bpchoice].errorfname, &qferror);
261   CeedQFunctionAddInput(qferror, "u", rp->ncompu, CEED_EVAL_INTERP);
262   CeedQFunctionAddInput(qferror, "true_soln", rp->ncompu, CEED_EVAL_NONE);
263   CeedQFunctionAddOutput(qferror, "error", rp->ncompu, CEED_EVAL_NONE);
264 
265   // Create the error operator
266   CeedOperatorCreate(ceed, qferror, CEED_QFUNCTION_NONE, CEED_QFUNCTION_NONE,
267                      &operror);
268   CeedOperatorSetField(operror, "u", ceeddata->Erestrictu,
269                        ceeddata->basisu, CEED_VECTOR_ACTIVE);
270   CeedOperatorSetField(operror, "true_soln", ceeddata->Erestrictui,
271                        CEED_BASIS_COLLOCATED, target);
272   CeedOperatorSetField(operror, "error", ceeddata->Erestrictui,
273                        CEED_BASIS_COLLOCATED, CEED_VECTOR_ACTIVE);
274 
275   // Set up Mat
276   userO->comm = rp->comm;
277   userO->dm = dm;
278   userO->Xloc = Xloc;
279   ierr = VecDuplicate(Xloc, &userO->Yloc); CHKERRQ(ierr);
280   userO->xceed = ceeddata->xceed;
281   userO->yceed = ceeddata->yceed;
282   userO->op = ceeddata->opapply;
283   userO->ceed = ceed;
284   userO->memtype = rp->memtyperequested;
285   if (rp->memtyperequested == CEED_MEM_HOST) {
286     userO->VecGetArray = VecGetArray;
287     userO->VecGetArrayRead = VecGetArrayRead;
288     userO->VecRestoreArray = VecRestoreArray;
289     userO->VecRestoreArrayRead = VecRestoreArrayRead;
290   } else {
291     userO->VecGetArray = VecCUDAGetArray;
292     userO->VecGetArrayRead = VecCUDAGetArrayRead;
293     userO->VecRestoreArray = VecCUDARestoreArray;
294     userO->VecRestoreArrayRead = VecCUDARestoreArrayRead;
295   }
296 
297   ierr = KSPCreate(rp->comm, &ksp); CHKERRQ(ierr);
298   {
299     PC pc;
300     ierr = KSPGetPC(ksp, &pc); CHKERRQ(ierr);
301     if (rp->bpchoice == CEED_BP1 || rp->bpchoice == CEED_BP2) {
302       ierr = PCSetType(pc, PCJACOBI); CHKERRQ(ierr);
303       ierr = PCJacobiSetType(pc, PC_JACOBI_ROWSUM); CHKERRQ(ierr);
304     } else {
305       ierr = PCSetType(pc, PCNONE); CHKERRQ(ierr);
306     }
307     ierr = KSPSetType(ksp, KSPCG); CHKERRQ(ierr);
308     ierr = KSPSetNormType(ksp, KSP_NORM_NATURAL); CHKERRQ(ierr);
309     ierr = KSPSetTolerances(ksp, 1e-10, PETSC_DEFAULT, PETSC_DEFAULT,
310                             PETSC_DEFAULT); CHKERRQ(ierr);
311   }
312   ierr = KSPSetOperators(ksp, matO, matO); CHKERRQ(ierr);
313 
314   // First run, if benchmarking
315   if (rp->benchmark_mode) {
316     ierr = KSPSetTolerances(ksp, 1e-10, PETSC_DEFAULT, PETSC_DEFAULT, 1);
317     CHKERRQ(ierr);
318     my_rt_start = MPI_Wtime();
319     ierr = KSPSolve(ksp, rhs, X); CHKERRQ(ierr);
320     my_rt = MPI_Wtime() - my_rt_start;
321     ierr = MPI_Allreduce(MPI_IN_PLACE, &my_rt, 1, MPI_DOUBLE, MPI_MIN, rp->comm);
322     CHKERRQ(ierr);
323     // Set maxits based on first iteration timing
324     if (my_rt > 0.02) {
325       ierr = KSPSetTolerances(ksp, 1e-10, PETSC_DEFAULT, PETSC_DEFAULT, rp->ksp_max_it_clip[0]);
326       CHKERRQ(ierr);
327     } else {
328       ierr = KSPSetTolerances(ksp, 1e-10, PETSC_DEFAULT, PETSC_DEFAULT, rp->ksp_max_it_clip[1]);
329       CHKERRQ(ierr);
330     }
331   }
332   ierr = KSPSetFromOptions(ksp); CHKERRQ(ierr);
333 
334   // Timed solve
335   ierr = VecZeroEntries(X); CHKERRQ(ierr);
336   ierr = PetscBarrier((PetscObject)ksp); CHKERRQ(ierr);
337 
338   // -- Performance logging
339   ierr = PetscLogStagePush(rp->solvestage); CHKERRQ(ierr);
340 
341   // -- Solve
342   my_rt_start = MPI_Wtime();
343   ierr = KSPSolve(ksp, rhs, X); CHKERRQ(ierr);
344   my_rt = MPI_Wtime() - my_rt_start;
345 
346   // -- Performance logging
347   ierr = PetscLogStagePop();
348 
349   // Output results
350   {
351     KSPType ksptype;
352     KSPConvergedReason reason;
353     PetscReal rnorm;
354     PetscInt its;
355     ierr = KSPGetType(ksp, &ksptype); CHKERRQ(ierr);
356     ierr = KSPGetConvergedReason(ksp, &reason); CHKERRQ(ierr);
357     ierr = KSPGetIterationNumber(ksp, &its); CHKERRQ(ierr);
358     ierr = KSPGetResidualNorm(ksp, &rnorm); CHKERRQ(ierr);
359     if (!rp->test_mode || reason < 0 || rnorm > 1e-8) {
360       ierr = PetscPrintf(rp->comm,
361                          "  KSP:\n"
362                          "    KSP Type                           : %s\n"
363                          "    KSP Convergence                    : %s\n"
364                          "    Total KSP Iterations               : %D\n"
365                          "    Final rnorm                        : %e\n",
366                          ksptype, KSPConvergedReasons[reason], its,
367                          (double)rnorm); CHKERRQ(ierr);
368     }
369     if (!rp->test_mode) {
370       ierr = PetscPrintf(rp->comm,"  Performance:\n"); CHKERRQ(ierr);
371     }
372     {
373       PetscReal maxerror;
374       ierr = ComputeErrorMax(userO, operror, X, target, &maxerror);
375       CHKERRQ(ierr);
376       PetscReal tol = 5e-2;
377       if (!rp->test_mode || maxerror > tol) {
378         ierr = MPI_Allreduce(&my_rt, &rt_min, 1, MPI_DOUBLE, MPI_MIN, rp->comm);
379         CHKERRQ(ierr);
380         ierr = MPI_Allreduce(&my_rt, &rt_max, 1, MPI_DOUBLE, MPI_MAX, rp->comm);
381         CHKERRQ(ierr);
382         ierr = PetscPrintf(rp->comm,
383                            "    Pointwise Error (max)              : %e\n"
384                            "    CG Solve Time                      : %g (%g) sec\n",
385                            (double)maxerror, rt_max, rt_min); CHKERRQ(ierr);
386       }
387     }
388     if (rp->benchmark_mode && (!rp->test_mode)) {
389       ierr = PetscPrintf(rp->comm,
390                          "    DoFs/Sec in CG                     : %g (%g) million\n",
391                          1e-6*gsize*its/rt_max,
392                          1e-6*gsize*its/rt_min); CHKERRQ(ierr);
393     }
394   }
395 
396   if (rp->write_solution) {
397     PetscViewer vtkviewersoln;
398 
399     ierr = PetscViewerCreate(rp->comm, &vtkviewersoln); CHKERRQ(ierr);
400     ierr = PetscViewerSetType(vtkviewersoln, PETSCVIEWERVTK); CHKERRQ(ierr);
401     ierr = PetscViewerFileSetName(vtkviewersoln, "solution.vtk"); CHKERRQ(ierr);
402     ierr = VecView(X, vtkviewersoln); CHKERRQ(ierr);
403     ierr = PetscViewerDestroy(&vtkviewersoln); CHKERRQ(ierr);
404   }
405 
406   // Cleanup
407   ierr = VecDestroy(&X); CHKERRQ(ierr);
408   ierr = VecDestroy(&Xloc); CHKERRQ(ierr);
409   ierr = VecDestroy(&userO->Yloc); CHKERRQ(ierr);
410   ierr = MatDestroy(&matO); CHKERRQ(ierr);
411   ierr = PetscFree(userO); CHKERRQ(ierr);
412   ierr = CeedDataDestroy(0, ceeddata); CHKERRQ(ierr);
413   ierr = DMDestroy(&dm); CHKERRQ(ierr);
414 
415   ierr = VecDestroy(&rhs); CHKERRQ(ierr);
416   ierr = VecDestroy(&rhsloc); CHKERRQ(ierr);
417   ierr = KSPDestroy(&ksp); CHKERRQ(ierr);
418   CeedVectorDestroy(&target);
419   CeedQFunctionDestroy(&qferror);
420   CeedOperatorDestroy(&operror);
421   CeedDestroy(&ceed);
422   PetscFunctionReturn(0);
423 }
424 
425 int main(int argc, char **argv) {
426   PetscInt ierr, commsize;
427   RunParams rp;
428   MPI_Comm comm;
429   char filename[PETSC_MAX_PATH_LEN];
430   char ceedresource[PETSC_MAX_PATH_LEN] = "/cpu/self";
431   char hostname[PETSC_MAX_PATH_LEN];
432 
433   PetscInt dim = 3, melem[3] = {3, 3, 3};
434   PetscInt num_degrees = 30, degree[30] = {}, num_localnodes = 2, localnodes[2] = {};
435   PetscMPIInt rankspernode;
436   PetscBool degree_set;
437   bpType bpchoice;
438 
439   // Check PETSc CUDA support
440   PetscBool petschavecuda;
441   // *INDENT-OFF*
442   #ifdef PETSC_HAVE_CUDA
443   petschavecuda = PETSC_TRUE;
444   #else
445   petschavecuda = PETSC_FALSE;
446   #endif
447   // *INDENT-ON*
448 
449   // Initialize PETSc
450   ierr = PetscInitialize(&argc, &argv, NULL, help);
451   if (ierr) return ierr;
452   comm = PETSC_COMM_WORLD;
453   ierr = MPI_Comm_size(comm, &commsize);
454   if (ierr != MPI_SUCCESS) return ierr;
455   #if defined(PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY)
456   {
457     MPI_Comm splitcomm;
458     ierr = MPI_Comm_split_type(comm, MPI_COMM_TYPE_SHARED, 0, MPI_INFO_NULL,
459                                &splitcomm);
460     CHKERRQ(ierr);
461     ierr = MPI_Comm_size(splitcomm, &rankspernode); CHKERRQ(ierr);
462     ierr = MPI_Comm_free(&splitcomm); CHKERRQ(ierr);
463   }
464   #else
465   rankspernode = -1; // Unknown
466   #endif
467 
468   // Setup all parameters needed in Run()
469   ierr = PetscMalloc1(1, &rp); CHKERRQ(ierr);
470   rp->comm = comm;
471 
472   // Read command line options
473   ierr = PetscOptionsBegin(comm, NULL, "CEED BPs in PETSc", NULL);
474   CHKERRQ(ierr);
475   bpchoice = CEED_BP1;
476   ierr = PetscOptionsEnum("-problem", "CEED benchmark problem to solve", NULL,
477                           bpTypes, (PetscEnum)bpchoice, (PetscEnum *)&bpchoice,
478                           NULL); CHKERRQ(ierr);
479   rp->ncompu = bpOptions[bpchoice].ncompu;
480   rp->test_mode = PETSC_FALSE;
481   ierr = PetscOptionsBool("-test",
482                           "Testing mode (do not print unless error is large)",
483                           NULL, rp->test_mode, &rp->test_mode, NULL); CHKERRQ(ierr);
484   rp->benchmark_mode = PETSC_FALSE;
485   ierr = PetscOptionsBool("-benchmark",
486                           "Benchmarking mode (prints benchmark statistics)",
487                           NULL, rp->benchmark_mode, &rp->benchmark_mode, NULL);
488   CHKERRQ(ierr);
489   rp->write_solution = PETSC_FALSE;
490   ierr = PetscOptionsBool("-write_solution", "Write solution for visualization",
491                           NULL, rp->write_solution, &rp->write_solution, NULL);
492   CHKERRQ(ierr);
493   degree[0] = rp->test_mode ? 3 : 2;
494   ierr = PetscOptionsIntArray("-degree",
495                               "Polynomial degree of tensor product basis", NULL,
496                               degree, &num_degrees, &degree_set); CHKERRQ(ierr);
497   if (!degree_set)
498     num_degrees = 1;
499   rp->qextra = bpOptions[bpchoice].qextra;
500   ierr = PetscOptionsInt("-qextra", "Number of extra quadrature points", NULL,
501                          rp->qextra, &rp->qextra, NULL); CHKERRQ(ierr);
502   ierr = PetscOptionsString("-ceed", "CEED resource specifier", NULL,
503                             ceedresource,
504                             ceedresource, sizeof(ceedresource), NULL); CHKERRQ(ierr);
505   ierr = PetscGetHostName(hostname, sizeof hostname); CHKERRQ(ierr);
506   ierr = PetscOptionsString("-hostname", "Hostname for output", NULL, hostname,
507                             hostname, sizeof(hostname), NULL); CHKERRQ(ierr);
508   rp->read_mesh = PETSC_FALSE;
509   ierr = PetscOptionsString("-mesh", "Read mesh from file", NULL, filename,
510                             filename, sizeof(filename), &rp->read_mesh);
511   CHKERRQ(ierr);
512   rp->filename = filename;
513   if (!rp->read_mesh) {
514     PetscInt tmp = dim;
515     ierr = PetscOptionsIntArray("-cells", "Number of cells per dimension", NULL,
516                                 melem, &tmp, NULL); CHKERRQ(ierr);
517   }
518   rp->memtyperequested = petschavecuda ? CEED_MEM_DEVICE : CEED_MEM_HOST;
519   ierr = PetscOptionsEnum("-memtype", "CEED MemType requested", NULL, memTypes,
520                           (PetscEnum)rp->memtyperequested,
521                           (PetscEnum *)&rp->memtyperequested, &rp->setmemtyperequest);
522   CHKERRQ(ierr);
523 
524   localnodes[0] = 1000;
525   ierr = PetscOptionsIntArray("-local_nodes",
526                               "Target number of locally owned nodes per "
527                               "process (single value or min,max)",
528                               NULL, localnodes, &num_localnodes, &rp->userlnodes);
529   CHKERRQ(ierr);
530   if (num_localnodes < 2)
531     localnodes[1] = 2 * localnodes[0];
532   {
533     PetscInt two = 2;
534     rp->ksp_max_it_clip[0] = 5;
535     rp->ksp_max_it_clip[1] = 20;
536     ierr = PetscOptionsIntArray("-ksp_max_it_clip",
537                                 "Min and max number of iterations to use during benchmarking",
538                                 NULL, rp->ksp_max_it_clip, &two, NULL); CHKERRQ(ierr);
539   }
540 
541   if (rp->benchmark_mode && !degree_set) {
542     PetscInt maxdegree = 8;
543     ierr = PetscOptionsInt("-max_degree", "Max degree to run in benchmark mode",
544                            NULL, maxdegree, &maxdegree, NULL);
545     CHKERRQ(ierr);
546     for (PetscInt i = 0; i < maxdegree; i++)
547       degree[i] = i + 1;
548     num_degrees = maxdegree;
549   }
550   {
551     PetscBool flg;
552     PetscInt p = rankspernode;
553     ierr = PetscOptionsInt("-p", "Number of MPI ranks per node", NULL,
554                            p, &p, &flg);
555     CHKERRQ(ierr);
556     if (flg) rankspernode = p;
557   }
558 
559   ierr = PetscOptionsEnd();
560   CHKERRQ(ierr);
561 
562   // Register PETSc logging stage
563   ierr = PetscLogStageRegister("Solve Stage", &rp->solvestage);
564   CHKERRQ(ierr);
565 
566   rp->petschavecuda = petschavecuda;
567   rp->ceedresource = ceedresource;
568   rp->hostname = hostname;
569   rp->dim = dim;
570   rp->melem = melem;
571   rp->bpchoice = bpchoice;
572   rp->rankspernode = rankspernode;
573 
574   for (PetscInt d = 0; d < num_degrees; d++) {
575     PetscInt deg = degree[d];
576     for (PetscInt n = localnodes[0]; n < localnodes[1]; n *= 2) {
577       rp->degree = deg;
578       rp->localnodes = n;
579       ierr = Run(rp); CHKERRQ(ierr);
580     }
581   }
582 
583   // Clear memory
584   ierr = PetscFree(rp); CHKERRQ(ierr);
585 
586   return PetscFinalize();
587 }
588