1*9ba83ac0SJeremy L Thompson // Copyright (c) 2017-2026, Lawrence Livermore National Security, LLC and other CEED contributors. 23d8e8822SJeremy L Thompson // All Rights Reserved. See the top-level LICENSE and NOTICE files for details. 3ed264d09SValeria Barra // 43d8e8822SJeremy L Thompson // SPDX-License-Identifier: BSD-2-Clause 53d8e8822SJeremy L Thompson // 6ea61e9acSJeremy L Thompson // This file is part of CEED: http://github.com/ceed 7ed264d09SValeria Barra 8ed264d09SValeria Barra /// @file 9ed264d09SValeria Barra /// libCEED QFunctions for diffusion operator example for a scalar field on the sphere using PETSc 10ed264d09SValeria Barra 11c0b5abf0SJeremy L Thompson #include <ceed/types.h> 12c0b5abf0SJeremy L Thompson #ifndef CEED_RUNNING_JIT_PASS 13ed264d09SValeria Barra #include <math.h> 14c0b5abf0SJeremy L Thompson #endif 15ed264d09SValeria Barra 16e83e87a5Sjeremylt // ----------------------------------------------------------------------------- 17ea61e9acSJeremy L Thompson // This QFunction sets up the geometric factors required for integration and coordinate transformations when reference coordinates have a different 18ed264d09SValeria Barra // dimension than the one of physical coordinates 19ed264d09SValeria Barra // 20ed264d09SValeria Barra // Reference (parent) 2D coordinates: X \in [-1, 1]^2 21ed264d09SValeria Barra // 22ea61e9acSJeremy L Thompson // Global 3D physical coordinates given by the mesh: xx \in [-R, R]^3 with R radius of the sphere 23ed264d09SValeria Barra // 24ea61e9acSJeremy L Thompson // Local 3D physical coordinates on the 2D manifold: x \in [-l, l]^3 with l half edge of the cube inscribed in the sphere 25ed264d09SValeria Barra // 26ed264d09SValeria Barra // Change of coordinates matrix computed by the library: 27ed264d09SValeria Barra // (physical 3D coords relative to reference 2D coords) 28ed264d09SValeria Barra // dxx_j/dX_i (indicial notation) [3 * 2] 29ed264d09SValeria Barra // 30ed264d09SValeria Barra // Change of coordinates x (on the 2D manifold) relative to xx (phyisical 3D): 31ed264d09SValeria Barra // dx_i/dxx_j (indicial notation) [3 * 3] 32ed264d09SValeria Barra // 33ed264d09SValeria Barra // Change of coordinates x (on the 2D manifold) relative to X (reference 2D): 34ed264d09SValeria Barra // (by chain rule) 35ed264d09SValeria Barra // dx_i/dX_j [3 * 2] = dx_i/dxx_k [3 * 3] * dxx_k/dX_j [3 * 2] 36ed264d09SValeria Barra // 379b072555Sjeremylt // mod_J is given by the magnitude of the cross product of the columns of dx_i/dX_j 38ed264d09SValeria Barra // 399b072555Sjeremylt // The quadrature data is stored in the array q_data. 40ed264d09SValeria Barra // 41ea61e9acSJeremy L Thompson // We require the determinant of the Jacobian to properly compute integrals of the form: int( u v ) 42ed264d09SValeria Barra // 439b072555Sjeremylt // q_data[0]: mod_J * w 44ed264d09SValeria Barra // 45ea61e9acSJeremy L Thompson // We use the Moore–Penrose (left) pseudoinverse of dx_i/dX_j, to compute dX_i/dx_j (and its transpose), needed to properly compute integrals of the 46ea61e9acSJeremy L Thompson // form: int( gradv gradu ) 47ed264d09SValeria Barra // 48ed264d09SValeria Barra // dX_i/dx_j [2 * 3] = (dx_i/dX_j)+ = (dxdX^T dxdX)^(-1) dxdX 49ed264d09SValeria Barra // 50ac4340cfSJed Brown // and the product simplifies to yield the contravariant metric tensor 51ac4340cfSJed Brown // 52ac4340cfSJed Brown // g^{ij} = dX_i/dx_k dX_j/dx_k = (dxdX^T dxdX)^{-1} 53ac4340cfSJed Brown // 5408fade8cSvaleriabarra // Stored: g^{ij} (in Voigt convention) in 5508fade8cSvaleriabarra // 569b072555Sjeremylt // q_data[1:3]: [dXdxdXdxT00 dXdxdXdxT01] 5708fade8cSvaleriabarra // [dXdxdXdxT01 dXdxdXdxT11] 58ed264d09SValeria Barra // ----------------------------------------------------------------------------- 592b730f8bSJeremy L Thompson CEED_QFUNCTION(SetupDiffGeo)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) { 60ed264d09SValeria Barra const CeedScalar *X = in[0], *J = in[1], *w = in[2]; 619b072555Sjeremylt CeedScalar *q_data = out[0]; 62ed264d09SValeria Barra 63ed264d09SValeria Barra // Quadrature Point Loop 642b730f8bSJeremy L Thompson CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) { 65ed264d09SValeria Barra // Read global Cartesian coordinates 662b730f8bSJeremy L Thompson const CeedScalar xx[3] = {X[i + 0 * Q], X[i + 1 * Q], X[i + 2 * Q]}; 67ed264d09SValeria Barra 68ed264d09SValeria Barra // Read dxxdX Jacobian entries, stored as 69ed264d09SValeria Barra // 0 3 70ed264d09SValeria Barra // 1 4 71ed264d09SValeria Barra // 2 5 722b730f8bSJeremy L Thompson const CeedScalar dxxdX[3][2] = { 732b730f8bSJeremy L Thompson {J[i + Q * 0], J[i + Q * 3]}, 742b730f8bSJeremy L Thompson {J[i + Q * 1], J[i + Q * 4]}, 752b730f8bSJeremy L Thompson {J[i + Q * 2], J[i + Q * 5]} 76ed264d09SValeria Barra }; 77ed264d09SValeria Barra 78ed264d09SValeria Barra // Setup 79ed264d09SValeria Barra // x = xx (xx^T xx)^{-1/2} 80ed264d09SValeria Barra // dx/dxx = I (xx^T xx)^{-1/2} - xx xx^T (xx^T xx)^{-3/2} 819b072555Sjeremylt const CeedScalar mod_xx_sq = xx[0] * xx[0] + xx[1] * xx[1] + xx[2] * xx[2]; 829b072555Sjeremylt CeedScalar xx_sq[3][3]; 832b730f8bSJeremy L Thompson for (int j = 0; j < 3; j++) { 842b730f8bSJeremy L Thompson for (int k = 0; k < 3; k++) xx_sq[j][k] = xx[j] * xx[k] / (sqrt(mod_xx_sq) * mod_xx_sq); 852b730f8bSJeremy L Thompson } 86ed264d09SValeria Barra 872b730f8bSJeremy L Thompson const CeedScalar dxdxx[3][3] = { 882b730f8bSJeremy L Thompson {1. / sqrt(mod_xx_sq) - xx_sq[0][0], -xx_sq[0][1], -xx_sq[0][2] }, 892b730f8bSJeremy L Thompson {-xx_sq[1][0], 1. / sqrt(mod_xx_sq) - xx_sq[1][1], -xx_sq[1][2] }, 902b730f8bSJeremy L Thompson {-xx_sq[2][0], -xx_sq[2][1], 1. / sqrt(mod_xx_sq) - xx_sq[2][2]} 91ed264d09SValeria Barra }; 92ed264d09SValeria Barra 93ed264d09SValeria Barra CeedScalar dxdX[3][2]; 942b730f8bSJeremy L Thompson for (int j = 0; j < 3; j++) { 95ed264d09SValeria Barra for (int k = 0; k < 2; k++) { 96ed264d09SValeria Barra dxdX[j][k] = 0; 972b730f8bSJeremy L Thompson for (int l = 0; l < 3; l++) dxdX[j][k] += dxdxx[j][l] * dxxdX[l][k]; 982b730f8bSJeremy L Thompson } 99ed264d09SValeria Barra } 100ed264d09SValeria Barra 101ed264d09SValeria Barra // J is given by the cross product of the columns of dxdX 1022b730f8bSJeremy L Thompson const CeedScalar J[3] = {dxdX[1][0] * dxdX[2][1] - dxdX[2][0] * dxdX[1][1], dxdX[2][0] * dxdX[0][1] - dxdX[0][0] * dxdX[2][1], 1032b730f8bSJeremy L Thompson dxdX[0][0] * dxdX[1][1] - dxdX[1][0] * dxdX[0][1]}; 104ed264d09SValeria Barra 105ed264d09SValeria Barra // Use the magnitude of J as our detJ (volume scaling factor) 1069b072555Sjeremylt const CeedScalar mod_J = sqrt(J[0] * J[0] + J[1] * J[1] + J[2] * J[2]); 107ed264d09SValeria Barra 1089b072555Sjeremylt // Interp-to-Interp q_data 1099b072555Sjeremylt q_data[i + Q * 0] = mod_J * w[i]; 110ed264d09SValeria Barra 11108fade8cSvaleriabarra // dxdX_k,j * dxdX_j,k 112ed264d09SValeria Barra CeedScalar dxdXTdxdX[2][2]; 1132b730f8bSJeremy L Thompson for (int j = 0; j < 2; j++) { 114ed264d09SValeria Barra for (int k = 0; k < 2; k++) { 115ed264d09SValeria Barra dxdXTdxdX[j][k] = 0; 1162b730f8bSJeremy L Thompson for (int l = 0; l < 3; l++) dxdXTdxdX[j][k] += dxdX[l][j] * dxdX[l][k]; 1172b730f8bSJeremy L Thompson } 118ed264d09SValeria Barra } 119ed264d09SValeria Barra 1202b730f8bSJeremy L Thompson const CeedScalar detdxdXTdxdX = dxdXTdxdX[0][0] * dxdXTdxdX[1][1] - dxdXTdxdX[1][0] * dxdXTdxdX[0][1]; 121ed264d09SValeria Barra 12208fade8cSvaleriabarra // Compute inverse of dxdXTdxdX, which is the 2x2 contravariant metric tensor g^{ij} 1239b072555Sjeremylt CeedScalar dxdXTdxdX_inv[2][2]; 1249b072555Sjeremylt dxdXTdxdX_inv[0][0] = dxdXTdxdX[1][1] / detdxdXTdxdX; 1259b072555Sjeremylt dxdXTdxdX_inv[0][1] = -dxdXTdxdX[0][1] / detdxdXTdxdX; 1269b072555Sjeremylt dxdXTdxdX_inv[1][0] = -dxdXTdxdX[1][0] / detdxdXTdxdX; 1279b072555Sjeremylt dxdXTdxdX_inv[1][1] = dxdXTdxdX[0][0] / detdxdXTdxdX; 128ed264d09SValeria Barra 129ed264d09SValeria Barra // Stored in Voigt convention 1309b072555Sjeremylt q_data[i + Q * 1] = dxdXTdxdX_inv[0][0]; 1319b072555Sjeremylt q_data[i + Q * 2] = dxdXTdxdX_inv[1][1]; 1329b072555Sjeremylt q_data[i + Q * 3] = dxdXTdxdX_inv[0][1]; 133ed264d09SValeria Barra } // End of Quadrature Point Loop 134ed264d09SValeria Barra 135ed264d09SValeria Barra // Return 136ed264d09SValeria Barra return 0; 137ed264d09SValeria Barra } 138ed264d09SValeria Barra 139e83e87a5Sjeremylt // ----------------------------------------------------------------------------- 140ed264d09SValeria Barra // This QFunction sets up the rhs and true solution for the problem 141ed264d09SValeria Barra // ----------------------------------------------------------------------------- 1422b730f8bSJeremy L Thompson CEED_QFUNCTION(SetupDiffRhs)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) { 143ed264d09SValeria Barra // Inputs 1449b072555Sjeremylt const CeedScalar *X = in[0], *q_data = in[1]; 145ed264d09SValeria Barra // Outputs 146ed264d09SValeria Barra CeedScalar *true_soln = out[0], *rhs = out[1]; 147ed264d09SValeria Barra 148ed264d09SValeria Barra // Context 149ed264d09SValeria Barra const CeedScalar *context = (const CeedScalar *)ctx; 150ed264d09SValeria Barra const CeedScalar R = context[0]; 151ed264d09SValeria Barra 152ed264d09SValeria Barra // Quadrature Point Loop 1532b730f8bSJeremy L Thompson CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) { 154ed264d09SValeria Barra // Read global Cartesian coordinates 155ed264d09SValeria Barra CeedScalar x = X[i + Q * 0], y = X[i + Q * 1], z = X[i + Q * 2]; 156ed264d09SValeria Barra // Normalize quadrature point coordinates to sphere 157ed264d09SValeria Barra CeedScalar rad = sqrt(x * x + y * y + z * z); 158ed264d09SValeria Barra x *= R / rad; 159ed264d09SValeria Barra y *= R / rad; 160ed264d09SValeria Barra z *= R / rad; 161ed264d09SValeria Barra // Compute latitude and longitude 162ed264d09SValeria Barra const CeedScalar theta = asin(z / R); // latitude 163ed264d09SValeria Barra const CeedScalar lambda = atan2(y, x); // longitude 164ed264d09SValeria Barra 165ed264d09SValeria Barra true_soln[i + Q * 0] = sin(lambda) * cos(theta); 166ed264d09SValeria Barra 1679b072555Sjeremylt rhs[i + Q * 0] = q_data[i + Q * 0] * 2 * sin(lambda) * cos(theta) / (R * R); 168ed264d09SValeria Barra } // End of Quadrature Point Loop 169ed264d09SValeria Barra 170ed264d09SValeria Barra return 0; 171ed264d09SValeria Barra } 172ed264d09SValeria Barra 173e83e87a5Sjeremylt // ----------------------------------------------------------------------------- 174ed264d09SValeria Barra // This QFunction applies the diffusion operator for a scalar field. 175ed264d09SValeria Barra // 176ed264d09SValeria Barra // Inputs: 177ed264d09SValeria Barra // ug - Input vector gradient at quadrature points 1789b072555Sjeremylt // q_data - Geometric factors 179ed264d09SValeria Barra // 180ed264d09SValeria Barra // Output: 181ed264d09SValeria Barra // vg - Output vector (test functions) gradient at quadrature points 182ed264d09SValeria Barra // ----------------------------------------------------------------------------- 1832b730f8bSJeremy L Thompson CEED_QFUNCTION(Diff)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) { 184ed264d09SValeria Barra // Inputs 1859b072555Sjeremylt const CeedScalar *ug = in[0], *q_data = in[1]; 186ed264d09SValeria Barra // Outputs 187ed264d09SValeria Barra CeedScalar *vg = out[0]; 188ed264d09SValeria Barra 189ed264d09SValeria Barra // Quadrature Point Loop 1902b730f8bSJeremy L Thompson CeedPragmaSIMD for (CeedInt i = 0; i < Q; i++) { 191ed264d09SValeria Barra // Read spatial derivatives of u 1922b730f8bSJeremy L Thompson const CeedScalar du[2] = {ug[i + Q * 0], ug[i + Q * 1]}; 1939b072555Sjeremylt // Read q_data 1949b072555Sjeremylt const CeedScalar w_det_J = q_data[i + Q * 0]; 1959b072555Sjeremylt // -- Grad-to-Grad q_data 196ed264d09SValeria Barra // ---- dXdx_j,k * dXdx_k,j 1972b730f8bSJeremy L Thompson const CeedScalar dXdxdXdx_T[2][2] = { 1982b730f8bSJeremy L Thompson {q_data[i + Q * 1], q_data[i + Q * 3]}, 1992b730f8bSJeremy L Thompson {q_data[i + Q * 3], q_data[i + Q * 2]} 200ed264d09SValeria Barra }; 201ed264d09SValeria Barra 2022b730f8bSJeremy L Thompson for (int j = 0; j < 2; j++) { // j = direction of vg 2032b730f8bSJeremy L Thompson vg[i + j * Q] = w_det_J * (du[0] * dXdxdXdx_T[0][j] + du[1] * dXdxdXdx_T[1][j]); 2042b730f8bSJeremy L Thompson } 205ed264d09SValeria Barra } // End of Quadrature Point Loop 206ed264d09SValeria Barra 207ed264d09SValeria Barra return 0; 208ed264d09SValeria Barra } 209ed264d09SValeria Barra // ----------------------------------------------------------------------------- 210