xref: /petsc/config/PETSc/Configure.py (revision d21efd2e5d911db017a545648c4fa4838359bb2d)
1import config.base
2
3import os
4import sys
5import re
6import pickle
7
8class Configure(config.base.Configure):
9  def __init__(self, framework):
10    config.base.Configure.__init__(self, framework)
11    self.headerPrefix = 'PETSC'
12    self.substPrefix  = 'PETSC'
13    self.installed    = 0 # 1 indicates that Configure itself has already compiled and installed PETSc
14    self.found        = 1
15    return
16
17  def __str2__(self):
18    desc = ['  Using GNU make: ' + self.make.make]
19    if not self.installed:
20      desc.append('xxx=========================================================================xxx')
21      desc.append(' Configure stage complete. Now build PETSc libraries with:')
22      desc.append('   %s PETSC_DIR=%s PETSC_ARCH=%s all' % (self.make.make_user, self.petscdir.dir, self.arch.arch))
23      desc.append('xxx=========================================================================xxx')
24    else:
25      desc.append('xxx=========================================================================xxx')
26      desc.append(' Installation complete. You do not need to run make to compile or install the software')
27      desc.append('xxx=========================================================================xxx')
28    return '\n'.join(desc)+'\n'
29
30  def setupHelp(self, help):
31    import nargs
32    help.addArgument('PETSc',  '-prefix=<dir>',                              nargs.Arg(None, '', 'Specifiy location to install PETSc (eg. /usr/local)'))
33    help.addArgument('PETSc',  '-with-prefetch=<bool>',                      nargs.ArgBool(None, 1,'Enable checking for prefetch instructions'))
34    help.addArgument('Windows','-with-windows-graphics=<bool>',              nargs.ArgBool(None, 1,'Enable check for Windows Graphics'))
35    help.addArgument('PETSc', '-with-default-arch=<bool>',                   nargs.ArgBool(None, 1, 'Allow using the last configured arch without setting PETSC_ARCH'))
36    help.addArgument('PETSc','-with-single-library=<bool>',                  nargs.ArgBool(None, 1,'Put all PETSc code into the single -lpetsc library'))
37    help.addArgument('PETSc','-with-fortran-bindings=<bool>',                nargs.ArgBool(None, 1,'Build PETSc fortran bindings in the library and corresponding module files'))
38    help.addArgument('PETSc', '-with-ios=<bool>',                            nargs.ArgBool(None, 0, 'Build an iPhone/iPad version of PETSc library'))
39    help.addArgument('PETSc', '-with-display=<x11display>',                  nargs.Arg(None, '', 'Specifiy DISPLAY env variable for use with matlab test)'))
40    help.addArgument('PETSc', '-with-package-scripts=<pyscripts>',           nargs.ArgFileList(None,None,'Specify configure package scripts for user provided packages'))
41    return
42
43  def registerPythonFile(self,filename,directory):
44    ''' Add a python file to the framework and registers its headerprefix, ... externalpackagedir
45        directory is the directory where the file relative to the BuildSystem or config path in python notation with . '''
46    (utilityName, ext) = os.path.splitext(filename)
47    if not utilityName.startswith('.') and not utilityName.startswith('#') and ext == '.py' and not utilityName == '__init__':
48      if directory: directory = directory+'.'
49      utilityObj                             = self.framework.require(directory+utilityName, self)
50      utilityObj.headerPrefix                = self.headerPrefix
51      utilityObj.archProvider                = self.arch
52      utilityObj.languageProvider            = self.languages
53      utilityObj.installDirProvider          = self.installdir
54      utilityObj.externalPackagesDirProvider = self.externalpackagesdir
55      utilityObj.precisionProvider           = self.scalartypes
56      utilityObj.indexProvider               = self.indexTypes
57      setattr(self, utilityName.lower(), utilityObj)
58      return utilityObj
59    return None
60
61  def setupDependencies(self, framework):
62    config.base.Configure.setupDependencies(self, framework)
63    self.programs      = framework.require('config.programs',           self)
64    self.setCompilers  = framework.require('config.setCompilers',       self)
65    self.compilers     = framework.require('config.compilers',          self)
66    self.arch          = framework.require('PETSc.options.arch',        self.setCompilers)
67    self.petscdir      = framework.require('PETSc.options.petscdir',    self.arch)
68    self.installdir    = framework.require('PETSc.options.installDir',  self)
69    self.dataFilesPath = framework.require('PETSc.options.dataFilesPath',self)
70    self.scalartypes   = framework.require('PETSc.options.scalarTypes', self)
71    self.indexTypes    = framework.require('PETSc.options.indexTypes',  self)
72    self.languages     = framework.require('PETSc.options.languages',   self.setCompilers)
73    self.indexTypes    = framework.require('PETSc.options.indexTypes',  self.compilers)
74    self.types         = framework.require('config.types',              self)
75    self.headers       = framework.require('config.headers',            self)
76    self.functions     = framework.require('config.functions',          self)
77    self.libraries     = framework.require('config.libraries',          self)
78    self.atomics       = framework.require('config.atomics',            self)
79    self.make          = framework.require('config.packages.make',      self)
80    self.blasLapack    = framework.require('config.packages.BlasLapack',self)
81    self.mpi           = framework.require('config.packages.MPI',       self)
82    self.fortran       = framework.require('config.compilersFortran',   self)
83    self.externalpackagesdir = framework.require('PETSc.options.externalpackagesdir',self)
84
85    for utility in sorted(os.listdir(os.path.join('config','PETSc','options'))):
86      self.registerPythonFile(utility,'PETSc.options')
87
88    for utility in sorted(os.listdir(os.path.join('config','BuildSystem','config','utilities'))):
89      self.registerPythonFile(utility,'config.utilities')
90
91    for package in sorted(os.listdir(os.path.join('config', 'BuildSystem', 'config', 'packages'))):
92      obj = self.registerPythonFile(package,'config.packages')
93      if obj:
94        obj.archProvider                = self.framework.requireModule(obj.archProvider, obj)
95        obj.languageProvider            = self.framework.requireModule(obj.languageProvider, obj)
96        obj.installDirProvider          = self.framework.requireModule(obj.installDirProvider, obj)
97        obj.externalPackagesDirProvider = self.framework.requireModule(obj.externalPackagesDirProvider, obj)
98        obj.precisionProvider           = self.framework.requireModule(obj.precisionProvider, obj)
99        obj.indexProvider               = self.framework.requireModule(obj.indexProvider, obj)
100
101    # Force blaslapack and opencl to depend on scalarType so precision is set before BlasLapack is built
102    framework.require('PETSc.options.scalarTypes', self.f2cblaslapack)
103    framework.require('PETSc.options.scalarTypes', self.fblaslapack)
104    framework.require('PETSc.options.scalarTypes', self.blaslapack)
105    framework.require('PETSc.options.scalarTypes', self.opencl)
106
107    self.programs.headerPrefix     = self.headerPrefix
108    self.setCompilers.headerPrefix = self.headerPrefix
109    self.compilers.headerPrefix    = self.headerPrefix
110    self.fortran.headerPrefix      = self.headerPrefix
111    self.types.headerPrefix        = self.headerPrefix
112    self.headers.headerPrefix      = self.headerPrefix
113    self.functions.headerPrefix    = self.headerPrefix
114    self.libraries.headerPrefix    = self.headerPrefix
115
116    # Register user provided package scripts
117    if 'with-package-scripts' in self.framework.argDB:
118      for script in self.framework.argDB['with-package-scripts']:
119        if os.path.splitext(script)[1] != '.py':
120          raise RuntimeError('Only python scripts compatible with configure package script format should be specified! Invalid option -with-package-scripts='+script)
121        self.framework.logPrint('User is registering a new package script: '+script)
122        dname,fname = os.path.split(script)
123        if dname: sys.path.append(dname)
124        self.registerPythonFile(fname,'')
125
126    # test for a variety of basic headers and functions
127    headersC = map(lambda name: name+'.h',['setjmp','dos','fcntl','float','io','malloc','pwd','strings',
128                                            'unistd','sys/sysinfo','machine/endian','sys/param','sys/procfs','sys/resource',
129                                            'sys/systeminfo','sys/times','sys/utsname',
130                                            'sys/socket','sys/wait','netinet/in','netdb','direct','time','Ws2tcpip','sys/types',
131                                            'WindowsX','float','ieeefp','stdint','pthread','inttypes','immintrin','zmmintrin'])
132    functions = ['access','_access','clock','drand48','getcwd','_getcwd','getdomainname','gethostname',
133                 'getwd','memalign','popen','PXFGETARG','rand','getpagesize',
134                 'readlink','realpath','usleep','sleep','_sleep',
135                 'uname','snprintf','_snprintf','lseek','_lseek','time','fork','stricmp',
136                 'strcasecmp','bzero','dlopen','dlsym','dlclose','dlerror',
137                 '_set_output_format','_mkdir','socket','gethostbyname','_pipe','fpresetsticky','fpsetsticky']
138    libraries = [(['fpe'],'handle_sigfpes')]
139    librariessock = [(['socket','nsl'],'socket')]
140    self.headers.headers.extend(headersC)
141    self.functions.functions.extend(functions)
142    self.libraries.libraries.extend(libraries)
143    if not hasattr(self,'socket'):
144      self.libraries.libraries.extend(librariessock)
145    return
146
147  def DumpPkgconfig(self, petsc_pc):
148    ''' Create a pkg-config file '''
149    if not os.path.exists(os.path.join(self.petscdir.dir,self.arch.arch,'lib','pkgconfig')):
150      os.makedirs(os.path.join(self.petscdir.dir,self.arch.arch,'lib','pkgconfig'))
151    with open(os.path.join(self.petscdir.dir,self.arch.arch,'lib','pkgconfig',petsc_pc),'w') as fd:
152      cflags_inc = ['-I${includedir}']
153      if self.framework.argDB['prefix']:
154        fd.write('prefix='+self.installdir.dir+'\n')
155      else:
156        fd.write('prefix='+os.path.join(self.petscdir.dir, self.arch.arch)+'\n')
157        cflags_inc.append('-I' + os.path.join(self.petscdir.dir, 'include'))
158      fd.write('exec_prefix=${prefix}\n')
159      fd.write('includedir=${prefix}/include\n')
160      fd.write('libdir=${prefix}/lib\n')
161
162      with self.setCompilers.Language('C'):
163        fd.write('ccompiler='+self.setCompilers.getCompiler()+'\n')
164        fd.write('cflags_extra='+self.setCompilers.getCompilerFlags().strip()+'\n')
165        fd.write('cflags_dep='+self.compilers.dependenciesGenerationFlag.get('C','')+'\n')
166        fd.write('ldflag_rpath='+self.setCompilers.CSharedLinkerFlag+'\n')
167      if hasattr(self.compilers, 'CXX'):
168        with self.setCompilers.Language('C++'):
169          fd.write('cxxcompiler='+self.setCompilers.getCompiler()+'\n')
170          fd.write('cxxflags_extra='+self.setCompilers.getCompilerFlags().strip()+'\n')
171      if hasattr(self.compilers, 'FC'):
172        with self.setCompilers.Language('FC'):
173          fd.write('fcompiler='+self.setCompilers.getCompiler()+'\n')
174          fd.write('fflags_extra='+self.setCompilers.getCompilerFlags().strip()+'\n')
175      if hasattr(self.compilers, 'CUDAC'):
176        with self.setCompilers.Language('CUDA'):
177          fd.write('cudacompiler='+self.setCompilers.getCompiler()+'\n')
178          fd.write('cudaflags_extra='+self.setCompilers.getCompilerFlags().strip()+'\n')
179          p = self.framework.require('config.packages.cuda')
180          fd.write('cudalib='+self.libraries.toStringNoDupes(p.lib)+'\n')
181          fd.write('cudainclude='+self.headers.toStringNoDupes(p.include)+'\n')
182          if hasattr(self.setCompilers,'CUDA_CXX'):
183            fd.write('cuda_cxx='+self.setCompilers.CUDA_CXX+'\n')
184            fd.write('cuda_cxxflags='+self.setCompilers.CUDA_CXXFLAGS+'\n')
185
186      fd.write('\n')
187      fd.write('Name: PETSc\n')
188      fd.write('Description: Library to solve ODEs and algebraic equations\n')
189      fd.write('Version: %s\n' % self.petscdir.version)
190      fd.write('Cflags: ' + ' '.join([self.setCompilers.CPPFLAGS] + cflags_inc) + '\n')
191      fd.write('Libs: '+self.libraries.toStringNoDupes(['-L${libdir}', self.petsclib], with_rpath=False)+'\n')
192      # Remove RPATH flags from library list.  User can add them using
193      # pkg-config --variable=ldflag_rpath and pkg-config --libs-only-L
194      fd.write('Libs.private: '+self.libraries.toStringNoDupes([f for f in self.packagelibs+self.complibs if not f.startswith(self.setCompilers.CSharedLinkerFlag)], with_rpath=False)+'\n')
195    return
196
197  def DumpModule(self):
198    ''' Create a module file '''
199    if not os.path.exists(os.path.join(self.petscdir.dir,self.arch.arch,'lib','petsc','conf','modules')):
200      os.makedirs(os.path.join(self.petscdir.dir,self.arch.arch,'lib','petsc','conf','modules'))
201    if not os.path.exists(os.path.join(self.petscdir.dir,self.arch.arch,'lib','petsc','conf','modules','petsc')):
202      os.makedirs(os.path.join(self.petscdir.dir,self.arch.arch,'lib','petsc','conf','modules','petsc'))
203    if self.framework.argDB['prefix']:
204      installdir  = self.installdir.dir
205      installarch = ''
206      installpath = os.path.join(installdir,'bin')
207    else:
208      installdir  = self.petscdir.dir
209      installarch = self.arch.arch
210      installpath = os.path.join(installdir,installarch,'bin')+':'+os.path.join(installdir,'bin')
211    fd = open(os.path.join(self.petscdir.dir,self.arch.arch,'lib','petsc','conf','modules','petsc',self.petscdir.version),'w')
212    fd.write('''\
213#%%Module
214
215proc ModulesHelp { } {
216    puts stderr "This module sets the path and environment variables for petsc-%s"
217    puts stderr "     see https://petsc.org/ for more information      "
218    puts stderr ""
219}
220module-whatis "PETSc - Portable, Extensible Toolkit for Scientific Computation"
221
222set petsc_dir   "%s"
223set petsc_arch  "%s"
224
225setenv PETSC_ARCH "$petsc_arch"
226setenv PETSC_DIR "$petsc_dir"
227prepend-path PATH "%s"
228''' % (self.petscdir.version, installdir, installarch, installpath))
229    fd.close()
230    return
231
232  def Dump(self):
233    ''' Actually put the values into the configuration files '''
234    # eventually everything between -- should be gone
235    if self.mpi.usingMPIUni:
236      #
237      # Remove any MPI/MPICH include files that may have been put here by previous runs of ./configure
238      self.executeShellCommand('rm -rf  '+os.path.join(self.petscdir.dir,self.arch.arch,'include','mpi*')+' '+os.path.join(self.petscdir.dir,self.arch.arch,'include','opa*'), log = self.log)
239
240    self.logPrintDivider()
241    # Test for compiler-specific macros that need to be defined.
242    if self.setCompilers.isCrayVector('CC', self.log):
243      self.addDefine('HAVE_CRAY_VECTOR','1')
244
245    if self.functions.haveFunction('gethostbyname') and self.functions.haveFunction('socket') and self.headers.haveHeader('netinet/in.h'):
246      self.addDefine('USE_SOCKET_VIEWER','1')
247      if self.checkCompile('#include <sys/socket.h>','setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0)'):
248        self.addDefine('HAVE_SO_REUSEADDR','1')
249
250    self.logPrintDivider()
251    self.setCompilers.pushLanguage('C')
252    compiler = self.setCompilers.getCompiler()
253    if [s for s in ['mpicc','mpiicc'] if os.path.basename(compiler).find(s)>=0]:
254      try:
255        output   = self.executeShellCommand(compiler + ' -show', log = self.log)[0]
256        compiler = output.split(' ')[0]
257        self.addDefine('MPICC_SHOW','"'+output.strip().replace('\n','\\\\n').replace('"','')+'"')
258      except:
259        self.addDefine('MPICC_SHOW','"Unavailable"')
260    else:
261      self.addDefine('MPICC_SHOW','"Unavailable"')
262    self.setCompilers.popLanguage()
263#-----------------------------------------------------------------------------------------------------
264
265    # Sometimes we need C compiler, even if built with C++
266    self.setCompilers.pushLanguage('C')
267    self.addMakeMacro('CC_FLAGS',self.setCompilers.getCompilerFlags())
268    self.setCompilers.popLanguage()
269
270    # And sometimes we need a C++ compiler even when PETSc is built with C
271    if hasattr(self.compilers, 'CXX'):
272      self.setCompilers.pushLanguage('Cxx')
273      self.addDefine('HAVE_CXX','1')
274      self.addMakeMacro('CXXPP_FLAGS',self.setCompilers.CXXPPFLAGS)
275      self.addMakeMacro('CXX_FLAGS',self.setCompilers.getCompilerFlags())
276      cxx_linker = self.setCompilers.getLinker()
277      self.addMakeMacro('CXX_LINKER',cxx_linker)
278      self.addMakeMacro('CXX_LINKER_FLAGS',self.setCompilers.getLinkerFlags())
279      self.setCompilers.popLanguage()
280
281    # C preprocessor values
282    self.addMakeMacro('CPP_FLAGS',self.setCompilers.CPPFLAGS)
283
284    # compiler values
285    self.setCompilers.pushLanguage(self.languages.clanguage)
286    self.addMakeMacro('PCC',self.setCompilers.getCompiler())
287    self.addMakeMacro('PCC_FLAGS',self.setCompilers.getCompilerFlags())
288    self.setCompilers.popLanguage()
289    # .o or .obj
290    self.addMakeMacro('CC_SUFFIX','o')
291
292    # executable linker values
293    self.setCompilers.pushLanguage(self.languages.clanguage)
294    pcc_linker = self.setCompilers.getLinker()
295    self.addMakeMacro('PCC_LINKER',pcc_linker)
296    self.addMakeMacro('PCC_LINKER_FLAGS',self.setCompilers.getLinkerFlags())
297    self.setCompilers.popLanguage()
298    # '' for Unix, .exe for Windows
299    self.addMakeMacro('CC_LINKER_SUFFIX','')
300
301    if hasattr(self.compilers, 'FC'):
302      if self.framework.argDB['with-fortran-bindings']:
303        if not self.fortran.fortranIsF90:
304          raise RuntimeError('Error! Fortran compiler "'+self.compilers.FC+'" does not support F90! PETSc fortran bindings require a F90 compiler')
305        self.addDefine('HAVE_FORTRAN','1')
306      self.setCompilers.pushLanguage('FC')
307      # need FPPFLAGS in config/setCompilers
308      self.addMakeMacro('FPP_FLAGS',self.setCompilers.FPPFLAGS)
309
310      # compiler values
311      self.addMakeMacro('FC_FLAGS',self.setCompilers.getCompilerFlags())
312      self.setCompilers.popLanguage()
313      # .o or .obj
314      self.addMakeMacro('FC_SUFFIX','o')
315
316      # executable linker values
317      self.setCompilers.pushLanguage('FC')
318      self.addMakeMacro('FC_LINKER',self.setCompilers.getLinker())
319      self.addMakeMacro('FC_LINKER_FLAGS',self.setCompilers.getLinkerFlags())
320      # apple requires this shared library linker flag on SOME versions of the os
321      if self.setCompilers.getLinkerFlags().find('-Wl,-commons,use_dylibs') > -1:
322        self.addMakeMacro('DARWIN_COMMONS_USE_DYLIBS',' -Wl,-commons,use_dylibs ')
323      self.setCompilers.popLanguage()
324
325      # F90 Modules
326      if self.setCompilers.fortranModuleIncludeFlag:
327        self.addMakeMacro('FC_MODULE_FLAG', self.setCompilers.fortranModuleIncludeFlag)
328      else: # for non-f90 compilers like g77
329        self.addMakeMacro('FC_MODULE_FLAG', '-I')
330      if self.setCompilers.fortranModuleIncludeFlag:
331        self.addMakeMacro('FC_MODULE_OUTPUT_FLAG', self.setCompilers.fortranModuleOutputFlag)
332    else:
333      self.addMakeMacro('FC','')
334
335    if hasattr(self.compilers, 'CUDAC'):
336      self.setCompilers.pushLanguage('CUDA')
337      self.addMakeMacro('CUDAC_FLAGS',self.setCompilers.getCompilerFlags())
338      self.addMakeMacro('CUDAPP_FLAGS',self.setCompilers.CUDAPPFLAGS)
339      self.setCompilers.popLanguage()
340
341    if hasattr(self.compilers, 'HIPC'):
342      self.setCompilers.pushLanguage('HIP')
343      self.addMakeMacro('HIPC_FLAGS',self.setCompilers.getCompilerFlags())
344      self.addMakeMacro('HIPPP_FLAGS',self.setCompilers.HIPPPFLAGS)
345      self.setCompilers.popLanguage()
346
347    if hasattr(self.compilers, 'SYCLC'):
348      self.setCompilers.pushLanguage('SYCL')
349      self.addMakeMacro('SYCLC_FLAGS',self.setCompilers.getCompilerFlags())
350      self.addMakeMacro('SYCLPP_FLAGS',self.setCompilers.SYCLPPFLAGS)
351      self.setCompilers.popLanguage()
352
353    # shared library linker values
354    self.setCompilers.pushLanguage(self.languages.clanguage)
355    # need to fix BuildSystem to collect these separately
356    self.addMakeMacro('SL_LINKER',self.setCompilers.getLinker())
357    self.addMakeMacro('SL_LINKER_FLAGS','${PCC_LINKER_FLAGS}')
358    self.setCompilers.popLanguage()
359    # One of 'a', 'so', 'lib', 'dll', 'dylib' (perhaps others also?) depending on the library generator and architecture
360    # Note: . is not included in this macro, consistent with AR_LIB_SUFFIX
361    if self.setCompilers.sharedLibraryExt == self.setCompilers.AR_LIB_SUFFIX:
362      self.addMakeMacro('SL_LINKER_SUFFIX', '')
363      self.addDefine('SLSUFFIX','""')
364    else:
365      self.addMakeMacro('SL_LINKER_SUFFIX', self.setCompilers.sharedLibraryExt)
366      self.addDefine('SLSUFFIX','"'+self.setCompilers.sharedLibraryExt+'"')
367
368    self.addMakeMacro('SL_LINKER_LIBS','${PETSC_EXTERNAL_LIB_BASIC}')
369
370#-----------------------------------------------------------------------------------------------------
371
372    # CONLY or CPP. We should change the PETSc makefiles to do this better
373    if self.languages.clanguage == 'C': lang = 'CONLY'
374    else: lang = 'CXXONLY'
375    self.addMakeMacro('PETSC_LANGUAGE',lang)
376
377    # real or complex
378    self.addMakeMacro('PETSC_SCALAR',self.scalartypes.scalartype)
379    # double or float
380    self.addMakeMacro('PETSC_PRECISION',self.scalartypes.precision)
381
382    if self.framework.argDB['with-batch']:
383      self.addMakeMacro('PETSC_WITH_BATCH','1')
384
385#-----------------------------------------------------------------------------------------------------
386    # print include and lib for makefiles
387    self.logPrintDivider()
388    self.framework.packages.reverse()
389    petscincludes = [os.path.join(self.petscdir.dir,'include'),os.path.join(self.petscdir.dir,self.arch.arch,'include')]
390    petscincludes_install = [os.path.join(self.installdir.dir, 'include')] if self.framework.argDB['prefix'] else petscincludes
391    includes = []
392    self.packagelibs = []
393    for i in self.framework.packages:
394      if not i.required:
395        if i.devicePackage:
396          self.addDefine('HAVE_DEVICE',1)
397        self.addDefine('HAVE_'+i.PACKAGE.replace('-','_'), 1)  # ONLY list package if it is used directly by PETSc (and not only by another package)
398      if not isinstance(i.lib, list):
399        i.lib = [i.lib]
400      if i.linkedbypetsc: self.packagelibs.extend(i.lib)
401      self.addMakeMacro(i.PACKAGE.replace('-','_')+'_LIB', self.libraries.toStringNoDupes(i.lib))
402      if hasattr(i,'include'):
403        if not isinstance(i.include,list):
404          i.include = [i.include]
405        includes.extend(i.include)
406        self.addMakeMacro(i.PACKAGE.replace('-','_')+'_INCLUDE',self.headers.toStringNoDupes(i.include))
407    if self.framework.argDB['with-single-library']:
408      self.petsclib = '-lpetsc'
409    else:
410      self.petsclib = '-lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetscsys'
411    self.complibs = self.compilers.flibs+self.compilers.cxxlibs+self.compilers.LIBS.split()
412    self.PETSC_WITH_EXTERNAL_LIB = self.libraries.toStringNoDupes(['-L${PETSC_DIR}/${PETSC_ARCH}/lib', self.petsclib]+self.packagelibs+self.complibs)
413    self.PETSC_EXTERNAL_LIB_BASIC = self.libraries.toStringNoDupes(self.packagelibs+self.complibs)
414
415    self.addMakeMacro('PETSC_EXTERNAL_LIB_BASIC',self.PETSC_EXTERNAL_LIB_BASIC)
416    allincludes = petscincludes + includes
417    allincludes_install = petscincludes_install + includes
418    self.PETSC_CC_INCLUDES = self.headers.toStringNoDupes(allincludes)
419    self.PETSC_CC_INCLUDES_INSTALL = self.headers.toStringNoDupes(allincludes_install)
420    self.addMakeMacro('PETSC_CC_INCLUDES',self.PETSC_CC_INCLUDES)
421    self.addMakeMacro('PETSC_CC_INCLUDES_INSTALL', self.PETSC_CC_INCLUDES_INSTALL)
422    if hasattr(self.compilers, 'FC'):
423      def modinc(includes):
424        return includes if self.fortran.fortranIsF90 else []
425      self.addMakeMacro('PETSC_FC_INCLUDES',self.headers.toStringNoDupes(allincludes,modinc(allincludes)))
426      self.addMakeMacro('PETSC_FC_INCLUDES_INSTALL',self.headers.toStringNoDupes(allincludes_install,modinc(allincludes_install)))
427
428    self.addDefine('LIB_DIR','"'+os.path.join(self.installdir.dir,'lib')+'"')
429
430    if self.framework.argDB['with-single-library']:
431      # overrides the values set in conf/variables
432      self.addMakeMacro('LIBNAME','${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}')
433      self.addMakeMacro('SHLIBS','libpetsc')
434      self.addMakeMacro('PETSC_LIB_BASIC','-lpetsc')
435      self.addMakeMacro('PETSC_KSP_LIB_BASIC','-lpetsc')
436      self.addMakeMacro('PETSC_TS_LIB_BASIC','-lpetsc')
437      self.addMakeMacro('PETSC_TAO_LIB_BASIC','-lpetsc')
438      self.addMakeMacro('PETSC_WITH_EXTERNAL_LIB',self.PETSC_WITH_EXTERNAL_LIB)
439      self.addDefine('USE_SINGLE_LIBRARY', '1')
440      if self.sharedlibraries.useShared:
441        self.addMakeMacro('PETSC_SYS_LIB','${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}')
442        self.addMakeMacro('PETSC_VEC_LIB','${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}')
443        self.addMakeMacro('PETSC_MAT_LIB','${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}')
444        self.addMakeMacro('PETSC_DM_LIB','${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}')
445        self.addMakeMacro('PETSC_KSP_LIB','${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}')
446        self.addMakeMacro('PETSC_SNES_LIB','${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}')
447        self.addMakeMacro('PETSC_TS_LIB','${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}')
448        self.addMakeMacro('PETSC_TAO_LIB','${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}')
449        self.addMakeMacro('PETSC_CHARACTERISTIC_LIB','${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}')
450        self.addMakeMacro('PETSC_LIB','${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}')
451        self.addMakeMacro('PETSC_CONTRIB','${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}')
452      else:
453        self.addMakeMacro('PETSC_SYS_LIB','${PETSC_WITH_EXTERNAL_LIB}')
454        self.addMakeMacro('PETSC_VEC_LIB','${PETSC_WITH_EXTERNAL_LIB}')
455        self.addMakeMacro('PETSC_MAT_LIB','${PETSC_WITH_EXTERNAL_LIB}')
456        self.addMakeMacro('PETSC_DM_LIB','${PETSC_WITH_EXTERNAL_LIB}')
457        self.addMakeMacro('PETSC_KSP_LIB','${PETSC_WITH_EXTERNAL_LIB}')
458        self.addMakeMacro('PETSC_SNES_LIB','${PETSC_WITH_EXTERNAL_LIB}')
459        self.addMakeMacro('PETSC_TS_LIB','${PETSC_WITH_EXTERNAL_LIB}')
460        self.addMakeMacro('PETSC_TAO_LIB','${PETSC_WITH_EXTERNAL_LIB}')
461        self.addMakeMacro('PETSC_CHARACTERISTIC_LIB','${PETSC_WITH_EXTERNAL_LIB}')
462        self.addMakeMacro('PETSC_LIB','${PETSC_WITH_EXTERNAL_LIB}')
463        self.addMakeMacro('PETSC_CONTRIB','${PETSC_WITH_EXTERNAL_LIB}')
464
465    if not os.path.exists(os.path.join(self.petscdir.dir,self.arch.arch,'lib')):
466      os.makedirs(os.path.join(self.petscdir.dir,self.arch.arch,'lib'))
467
468# add a makefile endtry for display
469    if self.framework.argDB['with-display']:
470      self.addMakeMacro('DISPLAY',self.framework.argDB['with-display'])
471
472    # add a makefile entry for configure options
473    self.addMakeMacro('CONFIGURE_OPTIONS', self.framework.getOptionsString(['configModules', 'optionsModule']).replace('\"','\\"'))
474    return
475
476  def dumpConfigInfo(self):
477    import time
478    fd = open(os.path.join(self.arch.arch,'include','petscconfiginfo.h'),'w')
479    fd.write('static const char *petscconfigureoptions = "'+self.framework.getOptionsString(['configModules', 'optionsModule']).replace('\"','\\"').replace('\\ ','\\\\ ')+'";\n')
480    fd.close()
481    return
482
483  def dumpMachineInfo(self):
484    import platform
485    import datetime
486    import time
487    import script
488    def escape(s):
489      return s.replace('"',r'\"').replace(r'\ ',r'\\ ') # novermin
490    fd = open(os.path.join(self.arch.arch,'include','petscmachineinfo.h'),'w')
491    fd.write('static const char *petscmachineinfo = \"\\n\"\n')
492    fd.write('\"-----------------------------------------\\n\"\n')
493    buildhost = platform.node()
494    if os.environ.get('SOURCE_DATE_EPOCH'):
495      buildhost = "reproducible"
496    buildtime = datetime.datetime.utcfromtimestamp(int(os.environ.get('SOURCE_DATE_EPOCH', time.time())))
497    fd.write('\"Libraries compiled on %s on %s \\n\"\n' % (buildtime, buildhost))
498    fd.write('\"Machine characteristics: %s\\n\"\n' % (platform.platform()))
499    fd.write('\"Using PETSc directory: %s\\n\"\n' % (escape(self.installdir.petscDir)))
500    fd.write('\"Using PETSc arch: %s\\n\"\n' % (escape(self.installdir.petscArch)))
501    fd.write('\"-----------------------------------------\\n\";\n')
502    fd.write('static const char *petsccompilerinfo = \"\\n\"\n')
503    self.setCompilers.pushLanguage(self.languages.clanguage)
504    fd.write('\"Using C compiler: %s %s \\n\"\n' % (escape(self.setCompilers.getCompiler()), escape(self.setCompilers.getCompilerFlags())))
505    self.setCompilers.popLanguage()
506    if hasattr(self.compilers, 'FC'):
507      self.setCompilers.pushLanguage('FC')
508      fd.write('\"Using Fortran compiler: %s %s  %s\\n\"\n' % (escape(self.setCompilers.getCompiler()), escape(self.setCompilers.getCompilerFlags()), escape(self.setCompilers.CPPFLAGS)))
509      self.setCompilers.popLanguage()
510    fd.write('\"-----------------------------------------\\n\";\n')
511    fd.write('static const char *petsccompilerflagsinfo = \"\\n\"\n')
512    fd.write('\"Using include paths: %s\\n\"\n' % (escape(self.PETSC_CC_INCLUDES_INSTALL.replace('${PETSC_DIR}', self.installdir.petscDir))))
513    fd.write('\"-----------------------------------------\\n\";\n')
514    fd.write('static const char *petsclinkerinfo = \"\\n\"\n')
515    self.setCompilers.pushLanguage(self.languages.clanguage)
516    fd.write('\"Using C linker: %s\\n\"\n' % (escape(self.setCompilers.getLinker())))
517    self.setCompilers.popLanguage()
518    if hasattr(self.compilers, 'FC'):
519      self.setCompilers.pushLanguage('FC')
520      fd.write('\"Using Fortran linker: %s\\n\"\n' % (escape(self.setCompilers.getLinker())))
521      self.setCompilers.popLanguage()
522    fd.write('\"Using libraries: %s%s -L%s %s %s\\n\"\n' % (escape(self.setCompilers.CSharedLinkerFlag), escape(os.path.join(self.installdir.petscDir, self.installdir.petscArch, 'lib')), escape(os.path.join(self.installdir.petscDir, self.installdir.petscArch, 'lib')), escape(self.petsclib), escape(self.PETSC_EXTERNAL_LIB_BASIC)))
523    fd.write('\"-----------------------------------------\\n\";\n')
524    fd.close()
525    return
526
527  def configurePrefetch(self):
528    '''Sees if there are any prefetch functions supported'''
529    if config.setCompilers.Configure.isSolaris(self.log) or self.framework.argDB['with-ios'] or not self.framework.argDB['with-prefetch']:
530      self.addDefine('Prefetch(a,b,c)', ' ')
531      return
532    self.pushLanguage(self.languages.clanguage)
533    if self.checkLink('#include <xmmintrin.h>', 'void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA);\n'):
534      # The Intel Intrinsics manual [1] specifies the prototype
535      #
536      #   void _mm_prefetch(char const *a, int sel);
537      #
538      # but other vendors seem to insist on using subtly different
539      # prototypes, including void* for the pointer, and an enum for
540      # sel.  These are both reasonable changes, but negatively impact
541      # portability.
542      #
543      # [1] https://software.intel.com/file/6373
544      self.addDefine('HAVE_XMMINTRIN_H', 1)
545      self.addDefine('Prefetch(a,b,c)', '_mm_prefetch((const char*)(a),(c))')
546      self.addDefine('PREFETCH_HINT_NTA', '_MM_HINT_NTA')
547      self.addDefine('PREFETCH_HINT_T0',  '_MM_HINT_T0')
548      self.addDefine('PREFETCH_HINT_T1',  '_MM_HINT_T1')
549      self.addDefine('PREFETCH_HINT_T2',  '_MM_HINT_T2')
550    elif self.checkLink('#include <xmmintrin.h>', 'void *v = 0;_mm_prefetch(v,_MM_HINT_NTA);\n'):
551      self.addDefine('HAVE_XMMINTRIN_H', 1)
552      self.addDefine('Prefetch(a,b,c)', '_mm_prefetch((const void*)(a),(c))')
553      self.addDefine('PREFETCH_HINT_NTA', '_MM_HINT_NTA')
554      self.addDefine('PREFETCH_HINT_T0',  '_MM_HINT_T0')
555      self.addDefine('PREFETCH_HINT_T1',  '_MM_HINT_T1')
556      self.addDefine('PREFETCH_HINT_T2',  '_MM_HINT_T2')
557    elif self.checkLink('', 'void *v = 0;__builtin_prefetch(v,0,0);\n'):
558      # From GCC docs: void __builtin_prefetch(const void *addr,int rw,int locality)
559      #
560      #   The value of rw is a compile-time constant one or zero; one
561      #   means that the prefetch is preparing for a write to the memory
562      #   address and zero, the default, means that the prefetch is
563      #   preparing for a read. The value locality must be a compile-time
564      #   constant integer between zero and three. A value of zero means
565      #   that the data has no temporal locality, so it need not be left
566      #   in the cache after the access. A value of three means that the
567      #   data has a high degree of temporal locality and should be left
568      #   in all levels of cache possible. Values of one and two mean,
569      #   respectively, a low or moderate degree of temporal locality.
570      #
571      # Here we adopt Intel's x86/x86-64 naming scheme for the locality
572      # hints.  Using macros for these values in necessary since some
573      # compilers require an enum.
574      self.addDefine('Prefetch(a,b,c)', '__builtin_prefetch((a),(b),(c))')
575      self.addDefine('PREFETCH_HINT_NTA', '0')
576      self.addDefine('PREFETCH_HINT_T0',  '3')
577      self.addDefine('PREFETCH_HINT_T1',  '2')
578      self.addDefine('PREFETCH_HINT_T2',  '1')
579    else:
580      self.addDefine('Prefetch(a,b,c)', ' ')
581    self.popLanguage()
582
583  def delGenFiles(self):
584    '''Delete generated files'''
585    delfile = os.path.join(self.arch.arch,'lib','petsc','conf','files')
586    try:
587      os.unlink(delfile)
588    except: pass
589
590  def configureAtoll(self):
591    '''Checks if atoll exists'''
592    if self.checkLink('#define _POSIX_C_SOURCE 200112L\n#include <stdlib.h>','long v = atoll("25")') or self.checkLink ('#include <stdlib.h>','long v = atoll("25")'):
593       self.addDefine('HAVE_ATOLL', '1')
594
595  def configureUnused(self):
596    '''Sees if __attribute((unused)) is supported'''
597    if self.framework.argDB['with-ios']:
598      self.addDefine('UNUSED', ' ')
599      return
600    self.pushLanguage(self.languages.clanguage)
601    if self.checkLink('__attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;}', 'int i = 0;\nint j = myfunc(&i);\ntypedef void* atype;\n__attribute((unused))  atype a;\n'):
602      self.addDefine('UNUSED', '__attribute((unused))')
603    else:
604      self.addDefine('UNUSED', ' ')
605    self.popLanguage()
606
607  def configureIsatty(self):
608    '''Check if the Unix C function isatty() works correctly
609       Actually just assumes it does not work correctly on batch systems'''
610    if not self.framework.argDB['with-batch']:
611      self.addDefine('USE_ISATTY',1)
612
613  def configureDeprecated(self):
614    '''Check if __attribute((deprecated)) is supported'''
615    self.pushLanguage(self.languages.clanguage)
616    ## Recent versions of gcc and clang support __attribute((deprecated("string argument"))), which is very useful, but
617    ## Intel has conspired to make a supremely environment-sensitive compiler.  The Intel compiler looks at the gcc
618    ## executable in the environment to determine the language compatibility that it should attempt to emulate.  Some
619    ## important Cray installations have built PETSc using the Intel compiler, but with a newer gcc module loaded (e.g.,
620    ## 4.7).  Thus at PETSc configure time, the Intel compiler decides to support the string argument, but the gcc
621    ## found in the default user environment is older and does not support the argument.  If GCC and Intel were cool
622    ## like Clang and supported __has_attribute, we could avoid configure tests entirely, but they don't.  And that is
623    ## why we can't have nice things.
624    #
625    # if self.checkCompile("""__attribute((deprecated("Why you shouldn't use myfunc"))) static int myfunc(void) { return 1;}""", ''):
626    #   self.addDefine('DEPRECATED_FUNCTION(why)', '__attribute((deprecated(why)))')
627    #   self.addDefine('DEPRECATED_TYPEDEF(why)', '__attribute((deprecated(why)))')
628    if self.checkCompile("""__attribute((deprecated)) static int myfunc(void) { return 1;}""", ''):
629      self.addDefine('DEPRECATED_FUNCTION(why)', '__attribute((deprecated))')
630      self.addDefine('DEPRECATED_TYPEDEF(why)', '__attribute((deprecated))')
631    else:
632      self.addDefine('DEPRECATED_FUNCTION(why)', ' ')
633      self.addDefine('DEPRECATED_TYPEDEF(why)', ' ')
634    if self.checkCompile("""enum E {oldval __attribute((deprecated)), newval };""", ''):
635      self.addDefine('DEPRECATED_ENUM(why)', '__attribute((deprecated))')
636    else:
637      self.addDefine('DEPRECATED_ENUM(why)', ' ')
638    # I was unable to make a CPP macro that takes the old and new values as separate arguments and builds the message needed by _Pragma
639    # hence the deprecation message is handled as it is
640    if self.checkCompile('#define TEST _Pragma("GCC warning \"Testing _Pragma\"") value'):
641      self.addDefine('DEPRECATED_MACRO(why)', '_Pragma(why)')
642    else:
643      self.addDefine('DEPRECATED_MACRO(why)', ' ')
644    self.popLanguage()
645
646  def configureAlign(self):
647    '''Check if __attribute(aligned) is supported'''
648    code = '''\
649struct mystruct {int myint;} __attribute((aligned(16)));
650char assert_aligned[(sizeof(struct mystruct)==16)*2-1];
651'''
652    self.pushLanguage(self.languages.clanguage)
653    if self.checkCompile(code):
654      self.addDefine('ATTRIBUTEALIGNED(size)', '__attribute((aligned(size)))')
655      self.addDefine('HAVE_ATTRIBUTEALIGNED', 1)
656    else:
657      self.framework.logPrint('Incorrect attribute(aligned)')
658      self.addDefine('ATTRIBUTEALIGNED(size)', ' ')
659    self.popLanguage()
660    return
661
662  def configureExpect(self):
663    '''Sees if the __builtin_expect directive is supported'''
664    self.pushLanguage(self.languages.clanguage)
665    if self.checkLink('', 'if (__builtin_expect(0,1)) return 1;'):
666      self.addDefine('HAVE_BUILTIN_EXPECT', 1)
667    self.popLanguage()
668
669  def configureFunctionName(self):
670    '''Sees if the compiler supports __func__ or a variant.'''
671    def getFunctionName(lang):
672      name = '"unknown"'
673      self.pushLanguage(lang)
674      for fname in ['__func__','__FUNCTION__','__extension__ __func__']:
675        code = "if ("+fname+"[0] != 'm') return 1;"
676        if self.checkCompile('',code) and self.checkLink('',code):
677          name = fname
678          break
679      self.popLanguage()
680      return name
681    langs = []
682
683    self.addDefine('FUNCTION_NAME_C', getFunctionName('C'))
684    if hasattr(self.compilers, 'CXX'):
685      self.addDefine('FUNCTION_NAME_CXX', getFunctionName('Cxx'))
686
687  def configureIntptrt(self):
688    '''Determine what to use for uintptr_t'''
689    def staticAssertSizeMatchesVoidStar(inc,typename):
690      # The declaration is an error if either array size is negative.
691      # It should be okay to use an int that is too large, but it would be very unlikely for this to be the case
692      return self.checkCompile(inc, ('#define STATIC_ASSERT(cond) char negative_length_if_false[2*(!!(cond))-1]\n'
693                                     + 'STATIC_ASSERT(sizeof(void*) == sizeof(%s));'%typename))
694    self.pushLanguage(self.languages.clanguage)
695    if self.checkCompile('#include <stdint.h>', 'int x; uintptr_t i = (uintptr_t)&x;'):
696      self.addDefine('UINTPTR_T', 'uintptr_t')
697    elif staticAssertSizeMatchesVoidStar('','unsigned long long'):
698      self.addDefine('UINTPTR_T', 'unsigned long long')
699    elif staticAssertSizeMatchesVoidStar('#include <stdlib.h>','size_t') or staticAssertSizeMatchesVoidStar('#include <string.h>', 'size_t'):
700      self.addDefine('UINTPTR_T', 'size_t')
701    elif staticAssertSizeMatchesVoidStar('','unsigned long'):
702      self.addDefine('UINTPTR_T', 'unsigned long')
703    elif staticAssertSizeMatchesVoidStar('','unsigned'):
704      self.addDefine('UINTPTR_T', 'unsigned')
705    else:
706      raise RuntimeError('Could not find any unsigned integer type matching void*')
707    self.popLanguage()
708
709  def configureRTLDDefault(self):
710    if self.checkCompile('#include <dlfcn.h>\n void *ptr =  RTLD_DEFAULT;'):
711      self.addDefine('RTLD_DEFAULT','1')
712    return
713
714  def configureSolaris(self):
715    '''Solaris specific stuff'''
716    if os.path.isdir(os.path.join('/usr','ucblib')):
717      try:
718        flag = getattr(self.setCompilers, self.language[-1]+'SharedLinkerFlag')
719      except AttributeError:
720        flag = None
721      if flag is None:
722        self.compilers.LIBS += ' -L/usr/ucblib'
723      else:
724        self.compilers.LIBS += ' '+flag+'/usr/ucblib'
725    return
726
727  def configureDarwin(self):
728    '''Log brew configuration for Apple systems'''
729    try:
730      self.executeShellCommand(['brew', 'config'], log = self.log)
731      self.executeShellCommand(['brew', 'info', 'gcc'], log = self.log)
732    except:
733      pass
734    return
735
736  def configureLinux(self):
737    '''Linux specific stuff'''
738    # TODO: Test for this by mallocing an odd number of floats and checking the address
739    self.addDefine('HAVE_DOUBLE_ALIGN_MALLOC', 1)
740    return
741
742  def configureWin32(self):
743    '''Win32 non-cygwin specific stuff'''
744    kernel32=0
745    if self.libraries.add('Kernel32.lib','GetComputerName',prototype='#include <windows.h>', call='GetComputerName(NULL,NULL);'):
746      self.addDefine('HAVE_WINDOWS_H',1)
747      self.addDefine('HAVE_GETCOMPUTERNAME',1)
748      kernel32=1
749    elif self.libraries.add('kernel32','GetComputerName',prototype='#include <windows.h>', call='GetComputerName(NULL,NULL);'):
750      self.addDefine('HAVE_WINDOWS_H',1)
751      self.addDefine('HAVE_GETCOMPUTERNAME',1)
752      kernel32=1
753    if kernel32:
754      if self.framework.argDB['with-windows-graphics']:
755        self.addDefine('USE_WINDOWS_GRAPHICS',1)
756      if self.checkLink('#include <windows.h>','LoadLibrary(0)'):
757        self.addDefine('HAVE_LOADLIBRARY',1)
758      if self.checkLink('#include <windows.h>','GetProcAddress(0,0)'):
759        self.addDefine('HAVE_GETPROCADDRESS',1)
760      if self.checkLink('#include <windows.h>','FreeLibrary(0)'):
761        self.addDefine('HAVE_FREELIBRARY',1)
762      if self.checkLink('#include <windows.h>','GetLastError()'):
763        self.addDefine('HAVE_GETLASTERROR',1)
764      if self.checkLink('#include <windows.h>','SetLastError(0)'):
765        self.addDefine('HAVE_SETLASTERROR',1)
766      if self.checkLink('#include <windows.h>\n','QueryPerformanceCounter(0);\n'):
767        self.addDefine('USE_MICROSOFT_TIME',1)
768    if self.libraries.add('Advapi32.lib','GetUserName',prototype='#include <windows.h>', call='GetUserName(NULL,NULL);'):
769      self.addDefine('HAVE_GET_USER_NAME',1)
770    elif self.libraries.add('advapi32','GetUserName',prototype='#include <windows.h>', call='GetUserName(NULL,NULL);'):
771      self.addDefine('HAVE_GET_USER_NAME',1)
772
773    if not self.libraries.add('User32.lib','GetDC',prototype='#include <windows.h>',call='GetDC(0);'):
774      self.libraries.add('user32','GetDC',prototype='#include <windows.h>',call='GetDC(0);')
775    if not self.libraries.add('Gdi32.lib','CreateCompatibleDC',prototype='#include <windows.h>',call='CreateCompatibleDC(0);'):
776      self.libraries.add('gdi32','CreateCompatibleDC',prototype='#include <windows.h>',call='CreateCompatibleDC(0);')
777
778    self.types.check('int32_t', 'int')
779    if not self.checkCompile('#include <sys/types.h>\n','uid_t u;\n'):
780      self.addTypedef('int', 'uid_t')
781      self.addTypedef('int', 'gid_t')
782    if not self.checkLink('#if defined(PETSC_HAVE_UNISTD_H)\n#include <unistd.h>\n#endif\n','int a=R_OK;\n'):
783      self.framework.addDefine('R_OK', '04')
784      self.framework.addDefine('W_OK', '02')
785      self.framework.addDefine('X_OK', '01')
786    if not self.checkLink('#include <sys/stat.h>\n','int a=0;\nif (S_ISDIR(a)){}\n'):
787      self.framework.addDefine('S_ISREG(a)', '(((a)&_S_IFMT) == _S_IFREG)')
788      self.framework.addDefine('S_ISDIR(a)', '(((a)&_S_IFMT) == _S_IFDIR)')
789    if self.checkCompile('#include <windows.h>\n','LARGE_INTEGER a;\nDWORD b=a.u.HighPart;\n'):
790      self.addDefine('HAVE_LARGE_INTEGER_U',1)
791
792    # Windows requires a Binary file creation flag when creating/opening binary files.  Is a better test in order?
793    if self.checkCompile('#include <windows.h>\n#include <fcntl.h>\n', 'int flags = O_BINARY;'):
794      self.addDefine('HAVE_O_BINARY',1)
795
796    if self.compilers.CC.find('win32fe') >= 0:
797      self.addDefine('HAVE_WINDOWS_COMPILERS',1)
798      self.addDefine('DIR_SEPARATOR','\'\\\\\'')
799      self.addDefine('REPLACE_DIR_SEPARATOR','\'/\'')
800      self.addDefine('CANNOT_START_DEBUGGER',1)
801      (petscdir,error,status) = self.executeShellCommand('cygpath -w '+self.installdir.petscDir, log = self.log)
802      self.addDefine('DIR','"'+petscdir.replace('\\','\\\\')+'"')
803      (petscdir,error,status) = self.executeShellCommand('cygpath -m '+self.installdir.petscDir, log = self.log)
804      self.addMakeMacro('wPETSC_DIR',petscdir)
805      if self.dataFilesPath.datafilespath:
806        (datafilespath,error,status) = self.executeShellCommand('cygpath -m '+self.dataFilesPath.datafilespath, log = self.log)
807        self.addMakeMacro('DATAFILESPATH',datafilespath)
808
809    else:
810      self.addDefine('REPLACE_DIR_SEPARATOR','\'\\\\\'')
811      self.addDefine('DIR_SEPARATOR','\'/\'')
812      self.addDefine('DIR','"'+self.installdir.petscDir+'"')
813      self.addMakeMacro('wPETSC_DIR',self.installdir.petscDir)
814      if self.dataFilesPath.datafilespath:
815        self.addMakeMacro('DATAFILESPATH',self.dataFilesPath.datafilespath)
816    self.addDefine('ARCH','"'+self.installdir.petscArch+'"')
817    return
818
819#-----------------------------------------------------------------------------------------------------
820  def configureCygwinBrokenPipe(self):
821    '''Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make
822    http://cygwin.com/ml/cygwin/2013-05/msg00340.html '''
823    if config.setCompilers.Configure.isCygwin(self.log):
824      import platform
825      import re
826      r=re.compile("([0-9]+).([0-9]+).([0-9]+)")
827      m=r.match(platform.release())
828      major=int(m.group(1))
829      minor=int(m.group(2))
830      subminor=int(m.group(3))
831      if ((major < 1) or (major == 1 and minor < 7) or (major == 1 and minor == 7 and subminor <= 18)):
832        self.addMakeMacro('PETSC_CYGWIN_BROKEN_PIPE','1')
833    return
834
835#-----------------------------------------------------------------------------------------------------
836  def configureDefaultArch(self):
837    conffile = os.path.join('lib','petsc','conf', 'petscvariables')
838    if self.framework.argDB['with-default-arch']:
839      fd = open(conffile, 'w')
840      fd.write('PETSC_ARCH='+self.arch.arch+'\n')
841      fd.write('PETSC_DIR='+self.petscdir.dir+'\n')
842      fd.write('include '+os.path.join('$(PETSC_DIR)','$(PETSC_ARCH)','lib','petsc','conf','petscvariables')+'\n')
843      fd.close()
844      self.framework.actions.addArgument('PETSc', 'Build', 'Set default architecture to '+self.arch.arch+' in '+conffile)
845    elif os.path.isfile(conffile):
846      try:
847        os.unlink(conffile)
848      except:
849        raise RuntimeError('Unable to remove file '+conffile+'. Did a different user create it?')
850    return
851
852#-----------------------------------------------------------------------------------------------------
853  def configureScript(self):
854    '''Output a script in the conf directory which will reproduce the configuration'''
855    import nargs
856    import sys
857    scriptName = os.path.join(self.arch.arch,'lib','petsc','conf', 'reconfigure-'+self.arch.arch+'.py')
858    args = dict([(nargs.Arg.parseArgument(arg)[0], arg) for arg in self.framework.clArgs])
859    if 'with-clean' in args:
860      del args['with-clean']
861    if 'force' in args:
862      del args['force']
863    if 'configModules' in args:
864      if nargs.Arg.parseArgument(args['configModules'])[1] == 'PETSc.Configure':
865        del args['configModules']
866    if 'optionsModule' in args:
867      if nargs.Arg.parseArgument(args['optionsModule'])[1] == 'config.compilerOptions':
868        del args['optionsModule']
869    if not 'PETSC_ARCH' in args:
870      args['PETSC_ARCH'] = 'PETSC_ARCH='+str(self.arch.arch)
871    f = open(scriptName, 'w')
872    f.write('#!'+sys.executable+'\n')
873    f.write('if __name__ == \'__main__\':\n')
874    f.write('  import sys\n')
875    f.write('  import os\n')
876    f.write('  sys.path.insert(0, os.path.abspath(\'config\'))\n')
877    f.write('  import configure\n')
878    # pretty print repr(args.values())
879    f.write('  configure_options = [\n')
880    for itm in sorted(args.values()):
881      f.write('    \''+str(itm)+'\',\n')
882    f.write('  ]\n')
883    f.write('  configure.petsc_configure(configure_options)\n')
884    f.close()
885    try:
886      os.chmod(scriptName, 0o775)
887    except OSError as e:
888      self.framework.logPrint('Unable to make reconfigure script executable:\n'+str(e))
889    self.framework.actions.addArgument('PETSc', 'File creation', 'Created '+scriptName+' for automatic reconfiguration')
890    return
891
892  def configureInstall(self):
893    '''Setup the directories for installation'''
894    if self.framework.argDB['prefix']:
895      self.addMakeRule('print_mesg_after_build','',
896       ['-@echo "========================================="',
897        '-@echo "Now to install the libraries do:"',
898        '-@echo "%s${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} install"' % self.installdir.installSudo,
899        '-@echo "========================================="'])
900    else:
901      self.addMakeRule('print_mesg_after_build','',
902       ['-@echo "========================================="',
903        '-@echo "Now to check if the libraries are working do:"',
904        '-@echo "${MAKE_USER} PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} check"',
905        '-@echo "========================================="'])
906      return
907
908  def configureGCOV(self):
909    if self.framework.argDB['with-gcov']:
910      self.addDefine('USE_GCOV','1')
911    return
912
913  def postProcessPackages(self):
914    postPackages=[]
915    for i in self.framework.packages:
916      if hasattr(i,'postProcess'): postPackages.append(i)
917    if postPackages:
918      # ctetgen needs petsc conf files. so attempt to create them early
919      self.framework.dumpConfFiles()
920      # tacky fix for dependency of Aluimia on Pflotran; requested via petsc-dev Matt provide a correct fix
921      for i in postPackages:
922        if i.name.upper() in ['PFLOTRAN']:
923          i.postProcess()
924          postPackages.remove(i)
925      for i in postPackages: i.postProcess()
926      for i in postPackages:
927        if i.installedpetsc:
928          self.installed = 1
929          break
930    return
931
932  def configure(self):
933    if 'package-prefix-hash' in self.argDB:
934      # turn off prefix if it was only used to for installing external packages.
935      self.framework.argDB['prefix'] = ''
936      self.dir = os.path.abspath(os.path.join(self.petscdir.dir, self.arch.arch))
937      self.installdir.dir = self.dir
938      self.installdir.petscDir = self.petscdir.dir
939      self.petscDir = self.petscdir.dir
940      self.petscArch = self.arch.arch
941      self.addMakeMacro('PREFIXDIR',self.dir)
942      self.confDir = os.path.abspath(os.path.join(self.petscdir.dir, self.arch.arch))
943
944    if not os.path.samefile(self.petscdir.dir, os.getcwd()):
945      raise RuntimeError('Wrong PETSC_DIR option specified: '+str(self.petscdir.dir) + '\n  Configure invoked in: '+os.path.realpath(os.getcwd()))
946    if self.framework.argDB['prefix'] and os.path.isdir(self.framework.argDB['prefix']) and os.path.samefile(self.framework.argDB['prefix'],self.petscdir.dir):
947      raise RuntimeError('Incorrect option --prefix='+self.framework.argDB['prefix']+' specified. It cannot be same as PETSC_DIR!')
948    if self.framework.argDB['prefix'] and self.framework.argDB['prefix'].find(' ') > -1:
949      raise RuntimeError('Your --prefix '+self.framework.argDB['prefix']+' has spaces in it; this is not allowed.\n Use a --prefix that does not have spaces in it')
950    if self.framework.argDB['prefix'] and os.path.isdir(self.framework.argDB['prefix']) and os.path.samefile(self.framework.argDB['prefix'],os.path.join(self.petscdir.dir,self.arch.arch)):
951      raise RuntimeError('Incorrect option --prefix='+self.framework.argDB['prefix']+' specified. It cannot be same as PETSC_DIR/PETSC_ARCH!')
952    self.framework.header          = os.path.join(self.arch.arch,'include','petscconf.h')
953    self.framework.cHeader         = os.path.join(self.arch.arch,'include','petscfix.h')
954    self.framework.poisonheader    = os.path.join(self.arch.arch,'include','petscconf_poison.h')
955    self.framework.pkgheader       = os.path.join(self.arch.arch,'include','petscpkg_version.h')
956    self.framework.makeMacroHeader = os.path.join(self.arch.arch,'lib','petsc','conf','petscvariables')
957    self.framework.makeRuleHeader  = os.path.join(self.arch.arch,'lib','petsc','conf','petscrules')
958    if self.libraries.math is None:
959      raise RuntimeError('PETSc requires a functional math library. Please send configure.log to petsc-maint@mcs.anl.gov.')
960    if self.languages.clanguage == 'Cxx' and not hasattr(self.compilers, 'CXX'):
961      raise RuntimeError('Cannot set C language to C++ without a functional C++ compiler.')
962    self.executeTest(self.configureRTLDDefault)
963    self.executeTest(self.configurePrefetch)
964    self.executeTest(self.configureUnused)
965    self.executeTest(self.configureDeprecated)
966    self.executeTest(self.configureIsatty)
967    self.executeTest(self.configureExpect)
968    self.executeTest(self.configureAlign)
969    self.executeTest(self.configureFunctionName)
970    self.executeTest(self.configureIntptrt)
971    self.executeTest(self.configureSolaris)
972    self.executeTest(self.configureLinux)
973    self.executeTest(self.configureDarwin)
974    self.executeTest(self.configureWin32)
975    self.executeTest(self.configureCygwinBrokenPipe)
976    self.executeTest(self.configureDefaultArch)
977    self.executeTest(self.configureScript)
978    self.executeTest(self.configureInstall)
979    self.executeTest(self.configureGCOV)
980    self.executeTest(self.configureAtoll)
981
982    self.Dump()
983    self.dumpConfigInfo()
984    self.dumpMachineInfo()
985    self.delGenFiles()
986    # need to save the current state of BuildSystem so that postProcess() packages can read it in and perhaps run make install
987    self.framework.storeSubstitutions(self.framework.argDB)
988    self.framework.argDB['configureCache'] = pickle.dumps(self.framework)
989    self.framework.argDB.save(force = True)
990    self.DumpPkgconfig('PETSc.pc')
991    self.DumpPkgconfig('petsc.pc')
992    self.DumpModule()
993    self.postProcessPackages()
994    self.framework.log.write('================================================================================\n')
995    self.logClear()
996    return
997