xref: /petsc/doc/miscellaneous/applications_publications.md (revision 49c2f9045d3a91e7be182f7f53e05380f8af9fad)
1*9b92b1d3SBarry Smith# Applications and Publications
2*9b92b1d3SBarry Smith
3*9b92b1d3SBarry SmithPETSc has been used for modeling in all of these areas: Acoustics, Aerodynamics, Air
4*9b92b1d3SBarry SmithPollution, Arterial Flow, Bone Fractures, Brain Surgery, Cancer Surgery, Cancer Treatment,
5*9b92b1d3SBarry SmithCarbon Sequestration, Cardiology, Cells, CFD, Combustion, Concrete, Corrosion, Data
6*9b92b1d3SBarry SmithMining, Dentistry, Earth Quakes, Economics, Esophagus, Fission, Fusion, Glaciers, Ground
7*9b92b1d3SBarry SmithWater Flow, Linguistics, Mantel Convection, Magnetic Films, Material Science, Medical
8*9b92b1d3SBarry SmithImaging, Ocean Dynamics, Oil Recover, PageRank, Polymer Injection Molding, Polymeric
9*9b92b1d3SBarry SmithMembranes, Quantum computing, Seismology, Semiconductors, Rockets, Relativity, Surface
10*9b92b1d3SBarry SmithWater Flow.
11*9b92b1d3SBarry Smith
12*9b92b1d3SBarry Smith## Images
13*9b92b1d3SBarry Smith
14*9b92b1d3SBarry SmithThese are images and movies from application simulations developed by PETSc users.
15*9b92b1d3SBarry Smith
16*9b92b1d3SBarry Smith- [COOLFluiD Simulation Environment](https://github.com/andrealani/COOLFluiD/wiki/Gallery-of-applications)
17*9b92b1d3SBarry Smith
18*9b92b1d3SBarry Smith- [Defmod - Parallel multiphysics finite element code for modeling crustal deformation
19*9b92b1d3SBarry Smith  during the earthquake/rifting cycle](https://bitbucket.org/stali/defmod/wiki/Gallery)
20*9b92b1d3SBarry Smith
21*9b92b1d3SBarry Smith- Pilhwa Lee, University of Michigan, Ann Arbor
22*9b92b1d3SBarry Smith
23*9b92b1d3SBarry Smith  - [Cardiopulmonary circulation simulation for the studying etiology of pulmonary
24*9b92b1d3SBarry Smith    arterial hypertension](http://www.cims.nyu.edu/~leep/UMich/Cardiopulmonary_circulation.html)
25*9b92b1d3SBarry Smith  - [Concentration dependent contraction of cardiomyocyte](http://www.cims.nyu.edu/~leep/UMich/Cardiac_differentiation.html)
26*9b92b1d3SBarry Smith  - [Micro-organism swimming in two-phase micro-environment](http://www.cims.nyu.edu/~leep/UMich/Cancer_metastasis.html)
27*9b92b1d3SBarry Smith
28*9b92b1d3SBarry Smith- [Louis Moresi, Movie from a recent Nature paper using Underworld](http://youtu.be/cVulRP2tUGM)
29*9b92b1d3SBarry Smith
30*9b92b1d3SBarry Smith- [MOOSE Full-core reactor simulation](https://www.youtube.com/watch?v=4xTfQxpGAI4)
31*9b92b1d3SBarry Smith
32*9b92b1d3SBarry Smith- [Richard Katz, Journal of Petrology, 2008. doi 10.1016/j.jcp.2008.06.039](http://www.earth.ox.ac.uk/~richardk/res/magmaRidge/RidgeModelsKatz.mov)
33*9b92b1d3SBarry Smith
34*9b92b1d3SBarry SmithTwo simulations of plate tectonic spreading at a mid-ocean ridge, driving mantle upwelling
35*9b92b1d3SBarry Smithand melting. Axes are labelled with depth and distance in kilometres. Colours show the
36*9b92b1d3SBarry Smithvolume fraction of magma present; solid streamlines show the mantle flow; dashed contours
37*9b92b1d3SBarry Smithare lines of constant temperature (the upper surface is cold, the deep mantle is hot);
38*9b92b1d3SBarry Smithtracer particles mark the motion of the magma, where it is present. The upper panel has a
39*9b92b1d3SBarry Smithplate speed of 1 cm/year; the bottom has 5 cm/year. Mid-ocean ridges host 80% of Earth’s
40*9b92b1d3SBarry Smithvolcanism. These simulation are PETSc-based numerical solutions of conservation of mass,
41*9b92b1d3SBarry Smithmomentum, and energy for two phases (mantle rock; magma) and two thermochemical
42*9b92b1d3SBarry Smithcomponents.
43*9b92b1d3SBarry Smith
44*9b92b1d3SBarry Smith- [Fokker-Planck kinetic calculation of the parallel current in the W7-X fusion experiment
45*9b92b1d3SBarry Smith  in Greifswald, Germany. Contributed by Matt
46*9b92b1d3SBarry Smith  Landreman.](https://github.com/landreman/sfincs/blob/master/doc/SFINCS_calculation_of_parallel_current_in_W7X_2040x1260.jpg)
47*9b92b1d3SBarry Smith
48*9b92b1d3SBarry Smith- [HiFi modeling framework, Vyacheslav Lukin](https://hifi-framework.webnode.com/hifi-framework/)
49*9b92b1d3SBarry Smith
50*9b92b1d3SBarry Smith  - [High resolution image](https://www.nersc.gov/assets/ScienceAtNERSC/SlavaFull.png)
51*9b92b1d3SBarry Smith  - [Turbulence analysis of an experimental flux-rope plasma](https://iopscience.iop.org/0741-3335/56/6/064003/media/PPCF490028_movie1.mp4)
52*9b92b1d3SBarry Smith  - [SSX Plasma Wind Tunnel -- Counter-helicity Merging](https://www.dropbox.com/s/v2g8vzns7na685v/merging_field.mpeg?dl=0)
53*9b92b1d3SBarry Smith  - [Movie 1](https://www.dropbox.com/s/nc4vwnxw3lt01mi/full_movie.mpeg?dl=0) and
54*9b92b1d3SBarry Smith    [Movie 2](https://www.dropbox.com/s/nn06fa8hsiqmqmw/zoom_movie.mpeg?dl=0) from
55*9b92b1d3SBarry Smith    [Self-organization during spherical torus formation by flux rope merging in the Mega
56*9b92b1d3SBarry Smith    Ampere Spherical Tokamak](https://www.mcs.anl.gov/article/10.1088/0741-3335/56/6/064009)
57*9b92b1d3SBarry Smith
58*9b92b1d3SBarry Smith- [CFDShip-Iowa simulations by Pablo Carrica](https://www.youtube.com/user/pcarrica)
59*9b92b1d3SBarry Smith
60*9b92b1d3SBarry Smith- [Simulation of Greenland present-day ice surface speed; it is a result of a PISM
61*9b92b1d3SBarry Smith  simulation done by Andy Aschwanden at the University of Alaska Fairbanks](https://www.dropbox.com/s/3m8rphl81y70r3g/greenland-speed-pism.pdf?dl=0)
62*9b92b1d3SBarry Smith
63*9b92b1d3SBarry Smith- [Design Optimization of Aircraft Wings](https://www.youtube.com/user/MDOLaboratory)
64*9b92b1d3SBarry Smith  discussed at <http://mdolab.engin.umich.edu>
65*9b92b1d3SBarry Smith
66*9b92b1d3SBarry Smith- [Fast deformation](https://web.cels.anl.gov/projects/petsc/download/images/FoldingAndErosion_FastDeformation.mov) and
67*9b92b1d3SBarry Smith  [slower deformation](https://web.cels.anl.gov/projects/petsc/download/images/FoldingAndErosion_SlowerDeformationSteeperInitialSlope.mov)
68*9b92b1d3SBarry Smith  from the code LaMEM developed by Boris Kaus, Johannes Gutenberg University of Mainz,
69*9b92b1d3SBarry Smith  Mainz, Germany.
70*9b92b1d3SBarry Smith
71*9b92b1d3SBarry SmithThe movies show the effects of erosion and tectonic motion on the deflection and folding
72*9b92b1d3SBarry Smithof rock units in the upper few kilometers of the Earth. In one case we have a slower
73*9b92b1d3SBarry Smithdeformation rate and a steeper initial slope whereas on the other case tectonic
74*9b92b1d3SBarry Smithdeformation is an order of magnitude faster. The resulting folding patterns have some
75*9b92b1d3SBarry Smithresemblance with natural folding patterns observed in the Zagros Mountains. From the paper
76*9b92b1d3SBarry SmithCollignon, M., Kaus, B., May, D.A., Fernandez, N., 2014. Influences of surface processes
77*9b92b1d3SBarry Smithon fold growth during 3-D detachment folding. Geochem Geophy Geosy
78*9b92b1d3SBarry Smithdoi:10.1002/2014GC005450
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