1 /* 2 Objects to manage the interactions between the mesh data structures and the algebraic objects 3 */ 4 #if !defined(__PETSCDM_H) 5 #define __PETSCDM_H 6 #include "petscmat.h" 7 8 PETSC_EXTERN PetscErrorCode DMInitializePackage(const char[]); 9 /*S 10 DM - Abstract PETSc object that manages an abstract grid object 11 12 Level: intermediate 13 14 Concepts: grids, grid refinement 15 16 Notes: The DMDACreate() based object and the DMCompositeCreate() based object are examples of DMs 17 18 Though the DM objects require the petscsnes.h include files the DM library is 19 NOT dependent on the SNES or KSP library. In fact, the KSP and SNES libraries depend on 20 DM. (This is not great design, but not trivial to fix). 21 22 .seealso: DMCompositeCreate(), DMDACreate() 23 S*/ 24 typedef struct _p_DM* DM; 25 26 PETSC_EXTERN PetscClassId DM_CLASSID; 27 28 /*J 29 DMType - String with the name of a PETSc DM or the creation function 30 with an optional dynamic library name, for example 31 http://www.mcs.anl.gov/petsc/lib.a:myveccreate() 32 33 Level: beginner 34 35 .seealso: DMSetType(), DM 36 J*/ 37 #define DMType char* 38 #define DMDA "da" 39 #define DMADDA "adda" 40 #define DMCOMPOSITE "composite" 41 #define DMSLICED "sliced" 42 #define DMSHELL "shell" 43 #define DMMESH "mesh" 44 #define DMCOMPLEX "complex" 45 #define DMCARTESIAN "cartesian" 46 #define DMIGA "iga" 47 #define DMREDUNDANT "redundant" 48 #define DMAKKT "akkt" 49 50 PETSC_EXTERN PetscFList DMList; 51 PETSC_EXTERN PetscBool DMRegisterAllCalled; 52 PETSC_EXTERN PetscErrorCode DMCreate(MPI_Comm,DM*); 53 PETSC_EXTERN PetscErrorCode DMSetType(DM, const DMType); 54 PETSC_EXTERN PetscErrorCode DMGetType(DM, const DMType *); 55 PETSC_EXTERN PetscErrorCode DMRegister(const char[],const char[],const char[],PetscErrorCode (*)(DM)); 56 PETSC_EXTERN PetscErrorCode DMRegisterAll(const char []); 57 PETSC_EXTERN PetscErrorCode DMRegisterDestroy(void); 58 59 60 /*MC 61 DMRegisterDynamic - Adds a new DM component implementation 62 63 Synopsis: 64 PetscErrorCode DMRegisterDynamic(const char *name,const char *path,const char *func_name, PetscErrorCode (*create_func)(DM)) 65 66 Not Collective 67 68 Input Parameters: 69 + name - The name of a new user-defined creation routine 70 . path - The path (either absolute or relative) of the library containing this routine 71 . func_name - The name of routine to create method context 72 - create_func - The creation routine itself 73 74 Notes: 75 DMRegisterDynamic() may be called multiple times to add several user-defined DMs 76 77 If dynamic libraries are used, then the fourth input argument (routine_create) is ignored. 78 79 Sample usage: 80 .vb 81 DMRegisterDynamic("my_da","/home/username/my_lib/lib/libO/solaris/libmy.a", "MyDMCreate", MyDMCreate); 82 .ve 83 84 Then, your DM type can be chosen with the procedural interface via 85 .vb 86 DMCreate(MPI_Comm, DM *); 87 DMSetType(DM,"my_da_name"); 88 .ve 89 or at runtime via the option 90 .vb 91 -da_type my_da_name 92 .ve 93 94 Notes: $PETSC_ARCH occuring in pathname will be replaced with appropriate values. 95 If your function is not being put into a shared library then use DMRegister() instead 96 97 Level: advanced 98 99 .keywords: DM, register 100 .seealso: DMRegisterAll(), DMRegisterDestroy(), DMRegister() 101 M*/ 102 #if defined(PETSC_USE_DYNAMIC_LIBRARIES) 103 #define DMRegisterDynamic(a,b,c,d) DMRegister(a,b,c,0) 104 #else 105 #define DMRegisterDynamic(a,b,c,d) DMRegister(a,b,c,d) 106 #endif 107 108 PETSC_EXTERN PetscErrorCode DMView(DM,PetscViewer); 109 PETSC_EXTERN PetscErrorCode DMLoad(DM,PetscViewer); 110 PETSC_EXTERN PetscErrorCode DMDestroy(DM*); 111 PETSC_EXTERN PetscErrorCode DMCreateGlobalVector(DM,Vec*); 112 PETSC_EXTERN PetscErrorCode DMCreateLocalVector(DM,Vec*); 113 PETSC_EXTERN PetscErrorCode DMGetLocalVector(DM,Vec *); 114 PETSC_EXTERN PetscErrorCode DMRestoreLocalVector(DM,Vec *); 115 PETSC_EXTERN PetscErrorCode DMGetGlobalVector(DM,Vec *); 116 PETSC_EXTERN PetscErrorCode DMRestoreGlobalVector(DM,Vec *); 117 PETSC_EXTERN PetscErrorCode DMClearGlobalVectors(DM); 118 PETSC_EXTERN PetscErrorCode DMGetNamedGlobalVector(DM,const char*,Vec*); 119 PETSC_EXTERN PetscErrorCode DMRestoreNamedGlobalVector(DM,const char*,Vec*); 120 PETSC_EXTERN PetscErrorCode DMGetLocalToGlobalMapping(DM,ISLocalToGlobalMapping*); 121 PETSC_EXTERN PetscErrorCode DMGetLocalToGlobalMappingBlock(DM,ISLocalToGlobalMapping*); 122 PETSC_EXTERN PetscErrorCode DMCreateFieldIS(DM,PetscInt*,char***,IS**); 123 PETSC_EXTERN PetscErrorCode DMGetBlockSize(DM,PetscInt*); 124 PETSC_EXTERN PetscErrorCode DMCreateColoring(DM,ISColoringType,const MatType,ISColoring*); 125 PETSC_EXTERN PetscErrorCode DMCreateMatrix(DM,const MatType,Mat*); 126 PETSC_EXTERN PetscErrorCode DMSetMatrixPreallocateOnly(DM,PetscBool); 127 PETSC_EXTERN PetscErrorCode DMCreateInterpolation(DM,DM,Mat*,Vec*); 128 PETSC_EXTERN PetscErrorCode DMCreateInjection(DM,DM,VecScatter*); 129 PETSC_EXTERN PetscErrorCode DMGetWorkArray(DM,PetscInt,PetscScalar**); 130 PETSC_EXTERN PetscErrorCode DMRefine(DM,MPI_Comm,DM*); 131 PETSC_EXTERN PetscErrorCode DMCoarsen(DM,MPI_Comm,DM*); 132 PETSC_EXTERN PetscErrorCode DMRefineHierarchy(DM,PetscInt,DM[]); 133 PETSC_EXTERN PetscErrorCode DMCoarsenHierarchy(DM,PetscInt,DM[]); 134 PETSC_EXTERN PetscErrorCode DMCoarsenHookAdd(DM,PetscErrorCode (*)(DM,DM,void*),PetscErrorCode (*)(DM,Mat,Vec,Mat,DM,void*),void*); 135 PETSC_EXTERN PetscErrorCode DMRefineHookAdd(DM,PetscErrorCode (*)(DM,DM,void*),PetscErrorCode (*)(DM,Mat,DM,void*),void*); 136 PETSC_EXTERN PetscErrorCode DMRestrict(DM,Mat,Vec,Mat,DM); 137 PETSC_EXTERN PetscErrorCode DMInterpolate(DM,Mat,DM); 138 PETSC_EXTERN PetscErrorCode DMSetFromOptions(DM); 139 PETSC_EXTERN PetscErrorCode DMSetUp(DM); 140 PETSC_EXTERN PetscErrorCode DMCreateInterpolationScale(DM,DM,Mat,Vec*); 141 PETSC_EXTERN PetscErrorCode DMCreateAggregates(DM,DM,Mat*); 142 PETSC_EXTERN PetscErrorCode DMGlobalToLocalBegin(DM,Vec,InsertMode,Vec); 143 PETSC_EXTERN PetscErrorCode DMGlobalToLocalEnd(DM,Vec,InsertMode,Vec); 144 PETSC_EXTERN PetscErrorCode DMLocalToGlobalBegin(DM,Vec,InsertMode,Vec); 145 PETSC_EXTERN PetscErrorCode DMLocalToGlobalEnd(DM,Vec,InsertMode,Vec); 146 PETSC_EXTERN PetscErrorCode DMConvert(DM,const DMType,DM*); 147 148 PETSC_EXTERN PetscErrorCode DMSetOptionsPrefix(DM,const char []); 149 PETSC_EXTERN PetscErrorCode DMSetVecType(DM,const VecType); 150 PETSC_EXTERN PetscErrorCode DMSetMatType(DM,const MatType); 151 PETSC_EXTERN PetscErrorCode DMSetApplicationContext(DM,void*); 152 PETSC_EXTERN PetscErrorCode DMSetApplicationContextDestroy(DM,PetscErrorCode (*)(void**)); 153 PETSC_EXTERN PetscErrorCode DMGetApplicationContext(DM,void*); 154 PETSC_EXTERN PetscErrorCode DMSetInitialGuess(DM,PetscErrorCode (*)(DM,Vec)); 155 PETSC_EXTERN PetscErrorCode DMSetFunction(DM,PetscErrorCode (*)(DM,Vec,Vec)); 156 PETSC_EXTERN PetscErrorCode DMSetJacobian(DM,PetscErrorCode (*)(DM,Vec,Mat,Mat,MatStructure *)); 157 PETSC_EXTERN PetscErrorCode DMSetVariableBounds(DM,PetscErrorCode (*)(DM,Vec,Vec)); 158 PETSC_EXTERN PetscErrorCode DMHasInitialGuess(DM,PetscBool *); 159 PETSC_EXTERN PetscErrorCode DMHasFunction(DM,PetscBool *); 160 PETSC_EXTERN PetscErrorCode DMHasJacobian(DM,PetscBool *); 161 PETSC_EXTERN PetscErrorCode DMHasVariableBounds(DM,PetscBool *); 162 PETSC_EXTERN PetscErrorCode DMHasColoring(DM,PetscBool *); 163 PETSC_EXTERN PetscErrorCode DMComputeInitialGuess(DM,Vec); 164 PETSC_EXTERN PetscErrorCode DMComputeFunction(DM,Vec,Vec); 165 PETSC_EXTERN PetscErrorCode DMComputeJacobian(DM,Vec,Mat,Mat,MatStructure *); 166 PETSC_EXTERN PetscErrorCode DMComputeJacobianDefault(DM,Vec,Mat,Mat,MatStructure *); 167 PETSC_EXTERN PetscErrorCode DMComputeVariableBounds(DM,Vec,Vec); 168 169 PETSC_EXTERN PetscErrorCode DMCreateSubDM(DM, PetscInt, PetscInt[], IS *, DM *); 170 PETSC_EXTERN PetscErrorCode DMCreateFieldDecompositionDM(DM,const char*,DM*); 171 PETSC_EXTERN PetscErrorCode DMCreateFieldDecomposition(DM,PetscInt*,char***,IS**,DM**); 172 PETSC_EXTERN PetscErrorCode DMCreateDomainDecompositionDM(DM,const char*,DM*); 173 PETSC_EXTERN PetscErrorCode DMCreateDomainDecomposition(DM,PetscInt*,char***,IS**,IS**,DM**); 174 175 PETSC_EXTERN PetscErrorCode DMGetRefineLevel(DM,PetscInt*); 176 PETSC_EXTERN PetscErrorCode DMGetCoarsenLevel(DM,PetscInt*); 177 PETSC_EXTERN PetscErrorCode DMFinalizePackage(void); 178 179 typedef struct NLF_DAAD* NLF; 180 181 #include "petscbag.h" 182 183 PETSC_EXTERN PetscErrorCode PetscViewerBinaryMatlabOpen(MPI_Comm, const char [], PetscViewer*); 184 PETSC_EXTERN PetscErrorCode PetscViewerBinaryMatlabDestroy(PetscViewer*); 185 PETSC_EXTERN PetscErrorCode PetscViewerBinaryMatlabOutputBag(PetscViewer, const char [], PetscBag); 186 PETSC_EXTERN PetscErrorCode PetscViewerBinaryMatlabOutputVec(PetscViewer, const char [], Vec); 187 PETSC_EXTERN PetscErrorCode PetscViewerBinaryMatlabOutputVecDA(PetscViewer, const char [], Vec, DM); 188 189 #define DM_FILE_CLASSID 1211221 190 191 /* FEM support */ 192 PETSC_EXTERN PetscErrorCode DMGetLocalFunction(DM, PetscErrorCode (**)(DM, Vec, Vec, void *)); 193 PETSC_EXTERN PetscErrorCode DMSetLocalFunction(DM, PetscErrorCode (*)(DM, Vec, Vec, void *)); 194 PETSC_EXTERN PetscErrorCode DMGetLocalJacobian(DM, PetscErrorCode (**)(DM, Vec, Mat, Mat, void *)); 195 PETSC_EXTERN PetscErrorCode DMSetLocalJacobian(DM, PetscErrorCode (*)(DM, Vec, Mat, Mat, void *)); 196 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*DMLocalFunction1)(DM, Vec, Vec, void*); 197 PETSC_EXTERN_TYPEDEF typedef PetscErrorCode (*DMLocalJacobian1)(DM, Vec, Mat, Mat, void*); 198 PETSC_EXTERN PetscErrorCode DMPrintCellVector(PetscInt, const char [], PetscInt, const PetscScalar []); 199 PETSC_EXTERN PetscErrorCode DMPrintCellMatrix(PetscInt, const char [], PetscInt, PetscInt, const PetscScalar []); 200 201 PETSC_EXTERN PetscErrorCode DMGetDefaultSection(DM, PetscSection *); 202 PETSC_EXTERN PetscErrorCode DMSetDefaultSection(DM, PetscSection); 203 PETSC_EXTERN PetscErrorCode DMGetDefaultGlobalSection(DM, PetscSection *); 204 PETSC_EXTERN PetscErrorCode DMGetDefaultSF(DM, PetscSF *); 205 PETSC_EXTERN PetscErrorCode DMSetDefaultSF(DM, PetscSF); 206 PETSC_EXTERN PetscErrorCode DMCreateDefaultSF(DM, PetscSection, PetscSection); 207 208 typedef struct { 209 PetscInt numQuadPoints; /* The number of quadrature points on an element */ 210 const PetscReal *quadPoints; /* The quadrature point coordinates */ 211 const PetscReal *quadWeights; /* The quadrature weights */ 212 PetscInt numBasisFuncs; /* The number of finite element basis functions on an element */ 213 PetscInt numComponents; /* The number of components for each basis function */ 214 const PetscReal *basis; /* The basis functions tabulated at the quadrature points */ 215 const PetscReal *basisDer; /* The basis function derivatives tabulated at the quadrature points */ 216 } PetscQuadrature; 217 #endif 218