1 #pragma once 2 3 #include <petscvec.h> /*I "petscvec.h" I*/ 4 #include <petscmat.h> /*I "petscmat.h" I*/ 5 #include <petscdm.h> /*I "petscdm.h" I*/ 6 #include <petscdt.h> /*I "petscdt.h" I*/ 7 8 #include <string> 9 #include <moab/Core.hpp> /*I "moab/Core.hpp" I*/ 10 #ifdef MOAB_HAVE_MPI 11 #include <moab/ParallelComm.hpp> /*I "moab/ParallelComm.hpp" I*/ 12 #endif 13 14 /* The MBERR macro is used to save typing. It checks a MOAB error code 15 * (rval) and calls SETERRQ if not MB_SUCCESS. A message (msg) can 16 * also be passed in. */ 17 #define MBERR(msg, rval) PetscCheck(rval == moab::MB_SUCCESS, PETSC_COMM_SELF, PETSC_ERR_LIB, "MOAB ERROR (%i): %s", (PetscErrorCode)rval, msg) 18 #define MBERRNM(rval) PetscCheck(rval == moab::MB_SUCCESS, PETSC_COMM_SELF, PETSC_ERR_LIB, "MOAB ERROR (%i)", rval) 19 #define MBERRV(mbif, rval) \ 20 do { \ 21 if (rval != moab::MB_SUCCESS) { \ 22 std::string emsg; \ 23 mbif->get_last_error(emsg); \ 24 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "MOAB ERROR (%i): %s", (PetscErrorCode)rval, emsg.c_str()); \ 25 } \ 26 } while (0) 27 #define MBERRVM(mbif, msg, rval) \ 28 do { \ 29 if (rval != moab::MB_SUCCESS) { \ 30 std::string emsg; \ 31 mbif->get_last_error(emsg); \ 32 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "MOAB ERROR (%i): %s :: %s", (PetscErrorCode)rval, msg, emsg.c_str()); \ 33 } \ 34 } while (0) 35 36 /* define enums for options to read and write MOAB files in parallel */ 37 typedef enum { 38 READ_PART, 39 READ_DELETE, 40 BCAST_DELETE 41 } MoabReadMode; 42 static const char *const MoabReadModes[] = {"READ_PART", "READ_DELETE", "BCAST_DELETE", "MoabReadMode", "", 0}; 43 typedef enum { 44 WRITE_PART, 45 FORMAT 46 } MoabWriteMode; 47 static const char *const MoabWriteModes[] = {"WRITE_PART", "FORMAT", "MoabWriteMode", "", 0}; 48 49 PETSC_EXTERN PetscErrorCode DMMoabCreate(MPI_Comm, DM *); 50 PETSC_EXTERN PetscErrorCode DMMoabCreateMoab(MPI_Comm, moab::Interface *, moab::Tag *, moab::Range *, DM *); 51 PETSC_EXTERN PetscErrorCode DMMoabOutput(DM, const char *, const char *); 52 53 PETSC_EXTERN PetscErrorCode DMMoabSetInterface(DM, moab::Interface *); 54 PETSC_EXTERN PetscErrorCode DMMoabGetInterface(DM, moab::Interface **); 55 #ifdef MOAB_HAVE_MPI 56 PETSC_EXTERN PetscErrorCode DMMoabGetParallelComm(DM, moab::ParallelComm **); 57 #endif 58 59 PETSC_EXTERN PetscErrorCode DMMoabSetLocalVertices(DM, moab::Range *); 60 PETSC_EXTERN PetscErrorCode DMMoabGetAllVertices(DM, moab::Range *); 61 PETSC_EXTERN PetscErrorCode DMMoabGetLocalVertices(DM, const moab::Range **, const moab::Range **); 62 PETSC_EXTERN PetscErrorCode DMMoabSetLocalElements(DM, moab::Range *); 63 PETSC_EXTERN PetscErrorCode DMMoabGetLocalElements(DM, const moab::Range **); 64 PETSC_EXTERN PetscErrorCode DMMoabSetLocalToGlobalTag(DM, moab::Tag); 65 PETSC_EXTERN PetscErrorCode DMMoabGetLocalToGlobalTag(DM, moab::Tag *); 66 PETSC_EXTERN PetscErrorCode DMMoabSetBlockSize(DM, PetscInt); 67 PETSC_EXTERN PetscErrorCode DMMoabGetBlockSize(DM, PetscInt *); 68 PETSC_EXTERN PetscErrorCode DMMoabSetBlockFills(DM, const PetscInt *, const PetscInt *); 69 PETSC_EXTERN PetscErrorCode DMMoabGetHierarchyLevel(DM, PetscInt *); 70 71 PETSC_EXTERN PetscErrorCode DMMoabGetDimension(DM, PetscInt *); 72 PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryEntities(DM, moab::Range *, moab::Range *, moab::Range *); 73 PETSC_EXTERN PetscErrorCode DMMoabGetMaterialBlock(DM, const moab::EntityHandle, PetscInt *); 74 75 PETSC_EXTERN PetscErrorCode DMMoabGetSize(DM, PetscInt *, PetscInt *); 76 PETSC_EXTERN PetscErrorCode DMMoabGetLocalSize(DM, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 77 PETSC_EXTERN PetscErrorCode DMMoabGetOffset(DM, PetscInt *); 78 79 PETSC_EXTERN PetscErrorCode DMMoabVecGetArrayRead(DM, Vec, void *); 80 PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArrayRead(DM, Vec, void *); 81 PETSC_EXTERN PetscErrorCode DMMoabVecGetArray(DM, Vec, void *); 82 PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArray(DM, Vec, void *); 83 84 PETSC_EXTERN PetscErrorCode DMMoabCreateVector(DM, moab::Tag, const moab::Range *, PetscBool, PetscBool, Vec *); 85 PETSC_EXTERN PetscErrorCode DMMoabGetVecTag(Vec, moab::Tag *); 86 PETSC_EXTERN PetscErrorCode DMMoabGetVecRange(Vec, moab::Range *); 87 88 PETSC_EXTERN PetscErrorCode DMMoabSetFieldVector(DM, PetscInt, Vec); 89 PETSC_EXTERN PetscErrorCode DMMoabSetGlobalFieldVector(DM, Vec); 90 91 PETSC_EXTERN PetscErrorCode DMMoabCreateVertices(DM, const PetscReal *, PetscInt, moab::Range *); 92 PETSC_EXTERN PetscErrorCode DMMoabCreateElement(DM, const moab::EntityType, const moab::EntityHandle *, PetscInt, moab::EntityHandle *); 93 PETSC_EXTERN PetscErrorCode DMMoabCreateSubmesh(DM, DM *); 94 PETSC_EXTERN PetscErrorCode DMMoabRenumberMeshEntities(DM); 95 96 PETSC_EXTERN PetscErrorCode DMMoabGetFieldName(DM, PetscInt, const char **); 97 PETSC_EXTERN PetscErrorCode DMMoabSetFieldName(DM, PetscInt, const char *); 98 PETSC_EXTERN PetscErrorCode DMMoabSetFieldNames(DM, PetscInt, const char *[]); 99 PETSC_EXTERN PetscErrorCode DMMoabGetFieldDof(DM, moab::EntityHandle, PetscInt, PetscInt *); 100 PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofs(DM, PetscInt, const moab::EntityHandle *, PetscInt, PetscInt *); 101 PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofsLocal(DM, PetscInt, const moab::EntityHandle *, PetscInt, PetscInt *); 102 PETSC_EXTERN PetscErrorCode DMMoabGetDofs(DM, PetscInt, const moab::EntityHandle *, PetscInt *); 103 PETSC_EXTERN PetscErrorCode DMMoabGetDofsLocal(DM, PetscInt, const moab::EntityHandle *, PetscInt *); 104 PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlocked(DM, PetscInt, const moab::EntityHandle *, PetscInt *); 105 PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlockedLocal(DM, PetscInt, const moab::EntityHandle *, PetscInt *); 106 107 PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlocked(DM, PetscInt **); 108 PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlockedLocal(DM, PetscInt **); 109 110 /* discretization and assembly specific DMMoab interface functions */ 111 PETSC_EXTERN PetscErrorCode DMMoabGetElementConnectivity(DM, moab::EntityHandle, PetscInt *, const moab::EntityHandle **); 112 PETSC_EXTERN PetscErrorCode DMMoabGetVertexConnectivity(DM, moab::EntityHandle, PetscInt *, moab::EntityHandle **); 113 PETSC_EXTERN PetscErrorCode DMMoabRestoreVertexConnectivity(DM, moab::EntityHandle, PetscInt *, moab::EntityHandle **); 114 PETSC_EXTERN PetscErrorCode DMMoabGetVertexCoordinates(DM, PetscInt, const moab::EntityHandle *, PetscReal *); 115 PETSC_EXTERN PetscErrorCode DMMoabIsEntityOnBoundary(DM, const moab::EntityHandle, PetscBool *); 116 PETSC_EXTERN PetscErrorCode DMMoabCheckBoundaryVertices(DM, PetscInt, const moab::EntityHandle *, PetscBool *); 117 PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryMarkers(DM, const moab::Range **, const moab::Range **, const moab::Range **); 118 119 /* TODO: Replace nverts/coords with just moab::EntityHandle -- can also eliminate dim */ 120 /* TODO: Replace quad/npts with PetscDT */ 121 PETSC_EXTERN PetscErrorCode DMMoabFEMCreateQuadratureDefault(const PetscInt, const PetscInt, PetscQuadrature *); 122 PETSC_EXTERN PetscErrorCode DMMoabFEMComputeBasis(const PetscInt, const PetscInt, const PetscReal *, const PetscQuadrature, PetscReal *, PetscReal *, PetscReal *, PetscReal **); 123 PETSC_EXTERN PetscErrorCode DMMoabPToRMapping(const PetscInt, const PetscInt, const PetscReal *, const PetscReal *, PetscReal *, PetscReal *); 124 125 /* DM utility creation interface */ 126 PETSC_EXTERN PetscErrorCode DMMoabCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, const PetscReal *, PetscInt, PetscInt, DM *); 127 PETSC_EXTERN PetscErrorCode DMMoabLoadFromFile(MPI_Comm, PetscInt, PetscInt, const char *, const char *, DM *); 128 129 /* Uniform refinement hierarchy interface */ 130 PETSC_EXTERN PetscErrorCode DMMoabGenerateHierarchy(DM, PetscInt, PetscInt *); 131