1 #if !defined(__PETSCMOAB_H) 2 #define __PETSCMOAB_H 3 4 #include <petscvec.h> /*I "petscvec.h" I*/ 5 #include <petscmat.h> /*I "petscmat.h" I*/ 6 #include <petscdm.h> /*I "petscdm.h" I*/ 7 #include <petscdt.h> /*I "petscdt.h" I*/ 8 9 #include <string> 10 #include <moab/Core.hpp> /*I "moab/Core.hpp" I*/ 11 #ifdef MOAB_HAVE_MPI 12 #include <moab/ParallelComm.hpp> /*I "moab/ParallelComm.hpp" I*/ 13 #endif 14 15 /* The MBERR macro is used to save typing. It checks a MOAB error code 16 * (rval) and calls SETERRQ if not MB_SUCCESS. A message (msg) can 17 * also be passed in. */ 18 #define MBERR(msg,rval) do{if(rval != moab::MB_SUCCESS) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s",(PetscErrorCode)rval,msg);} while(0) 19 #define MBERRNM(rval) do{if(rval != moab::MB_SUCCESS) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i)",rval);} while(0) 20 #define MBERRV(mbif,rval) do{if(rval != moab::MB_SUCCESS) { std::string emsg; mbif->get_last_error(emsg); SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s",(PetscErrorCode)rval,emsg.c_str());} } while(0) 21 #define MBERRVM(mbif,msg,rval) do{if(rval != moab::MB_SUCCESS) { std::string emsg; mbif->get_last_error(emsg); SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_LIB,"MOAB ERROR (%i): %s :: %s",(PetscErrorCode)rval,msg,emsg.c_str());} } while(0) 22 23 24 /* define enums for options to read and write MOAB files in parallel */ 25 typedef enum {READ_PART, READ_DELETE, BCAST_DELETE} MoabReadMode; 26 static const char *const MoabReadModes[] = {"READ_PART", "READ_DELETE", "BCAST_DELETE", "MoabReadMode", "", 0}; 27 typedef enum {WRITE_PART, FORMAT} MoabWriteMode; 28 static const char *const MoabWriteModes[] = {"WRITE_PART", "FORMAT", "MoabWriteMode", "", 0}; 29 30 PETSC_EXTERN PetscErrorCode DMMoabCreate(MPI_Comm comm, DM *moab); 31 PETSC_EXTERN PetscErrorCode DMMoabCreateMoab(MPI_Comm comm, moab::Interface *mbiface, moab::Tag *ltog_tag, moab::Range *range, DM *moab); 32 PETSC_EXTERN PetscErrorCode DMMoabOutput(DM, const char*, const char*); 33 34 PETSC_EXTERN PetscErrorCode DMMoabSetInterface(DM, moab::Interface *); 35 PETSC_EXTERN PetscErrorCode DMMoabGetInterface(DM, moab::Interface **); 36 #ifdef MOAB_HAVE_MPI 37 PETSC_EXTERN PetscErrorCode DMMoabGetParallelComm(DM, moab::ParallelComm**); 38 #endif 39 40 PETSC_EXTERN PetscErrorCode DMMoabSetLocalVertices(DM, moab::Range *); 41 PETSC_EXTERN PetscErrorCode DMMoabGetAllVertices(DM, moab::Range *local); 42 PETSC_EXTERN PetscErrorCode DMMoabGetLocalVertices(DM, const moab::Range**, const moab::Range**); 43 PETSC_EXTERN PetscErrorCode DMMoabSetLocalElements(DM, moab::Range*); 44 PETSC_EXTERN PetscErrorCode DMMoabGetLocalElements(DM, const moab::Range**); 45 PETSC_EXTERN PetscErrorCode DMMoabSetLocalToGlobalTag(DM, moab::Tag); 46 PETSC_EXTERN PetscErrorCode DMMoabGetLocalToGlobalTag(DM, moab::Tag*); 47 PETSC_EXTERN PetscErrorCode DMMoabSetBlockSize(DM, PetscInt bs); 48 PETSC_EXTERN PetscErrorCode DMMoabGetBlockSize(DM, PetscInt *bs); 49 PETSC_EXTERN PetscErrorCode DMMoabSetBlockFills(DM, const PetscInt*, const PetscInt*); 50 PETSC_EXTERN PetscErrorCode DMMoabGetHierarchyLevel(DM, PetscInt *); 51 52 PETSC_EXTERN PetscErrorCode DMMoabGetDimension(DM dm, PetscInt *dim); 53 PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryEntities(DM dm, moab::Range*, moab::Range*, moab::Range*); 54 PETSC_EXTERN PetscErrorCode DMMoabGetMaterialBlock(DM dm, const moab::EntityHandle, PetscInt*); 55 56 PETSC_EXTERN PetscErrorCode DMMoabGetSize(DM dm, PetscInt*, PetscInt*); 57 PETSC_EXTERN PetscErrorCode DMMoabGetLocalSize(DM dm, PetscInt*, PetscInt*, PetscInt*, PetscInt*); 58 PETSC_EXTERN PetscErrorCode DMMoabGetOffset(DM dm, PetscInt*); 59 60 PETSC_EXTERN PetscErrorCode DMMoabVecGetArrayRead(DM, Vec, void*); 61 PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArrayRead(DM, Vec, void*); 62 PETSC_EXTERN PetscErrorCode DMMoabVecGetArray(DM, Vec, void*); 63 PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArray(DM, Vec, void*); 64 65 PETSC_EXTERN PetscErrorCode DMMoabCreateVector(DM dm, moab::Tag tag, const moab::Range *range, PetscBool serial, PetscBool destroy_tag, Vec *X); 66 PETSC_EXTERN PetscErrorCode DMMoabGetVecTag(Vec vec, moab::Tag *tag); 67 PETSC_EXTERN PetscErrorCode DMMoabGetVecRange(Vec vec, moab::Range *range); 68 69 PETSC_EXTERN PetscErrorCode DMMoabSetFieldVector(DM, PetscInt, Vec); 70 PETSC_EXTERN PetscErrorCode DMMoabSetGlobalFieldVector(DM, Vec); 71 72 PETSC_EXTERN PetscErrorCode DMMoabCreateVertices(DM, const PetscReal* coords, PetscInt nverts, moab::Range*); 73 PETSC_EXTERN PetscErrorCode DMMoabCreateElement(DM, const moab::EntityType type, const moab::EntityHandle* conn, PetscInt nverts, moab::EntityHandle* elem); 74 PETSC_EXTERN PetscErrorCode DMMoabCreateSubmesh(DM dm, DM *newdm); 75 PETSC_EXTERN PetscErrorCode DMMoabRenumberMeshEntities(DM dm); 76 77 PETSC_EXTERN PetscErrorCode DMMoabGetFieldName(DM dm, PetscInt field, const char **fieldName); 78 PETSC_EXTERN PetscErrorCode DMMoabSetFieldName(DM dm, PetscInt field, const char *fieldName); 79 PETSC_EXTERN PetscErrorCode DMMoabSetFieldNames(DM dm, PetscInt nfields, const char* fields[]); 80 PETSC_EXTERN PetscErrorCode DMMoabGetFieldDof(DM dm, moab::EntityHandle point, PetscInt field, PetscInt* dof); 81 PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofs(DM dm, PetscInt npoints, const moab::EntityHandle* points, PetscInt field, PetscInt* dof); 82 PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofsLocal(DM dm, PetscInt npoints, const moab::EntityHandle* points, PetscInt field, PetscInt* dof); 83 PETSC_EXTERN PetscErrorCode DMMoabGetDofs(DM dm, PetscInt npoints, const moab::EntityHandle* points, PetscInt* dof); 84 PETSC_EXTERN PetscErrorCode DMMoabGetDofsLocal(DM dm, PetscInt npoints, const moab::EntityHandle* points, PetscInt* dof); 85 PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlocked(DM dm, PetscInt npoints, const moab::EntityHandle* points, PetscInt* dof); 86 PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlockedLocal(DM dm, PetscInt npoints, const moab::EntityHandle* points, PetscInt* dof); 87 88 PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlocked(DM dm, PetscInt** dof); 89 PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlockedLocal(DM dm, PetscInt** dof); 90 91 /* discretization and assembly specific DMMoab interface functions */ 92 PETSC_EXTERN PetscErrorCode DMMoabGetElementConnectivity(DM dm, moab::EntityHandle ehandle, PetscInt* nconn, const moab::EntityHandle **conn); 93 PETSC_EXTERN PetscErrorCode DMMoabGetVertexConnectivity(DM dm, moab::EntityHandle ehandle, PetscInt* nconn, moab::EntityHandle **conn); 94 PETSC_EXTERN PetscErrorCode DMMoabRestoreVertexConnectivity(DM dm, moab::EntityHandle ehandle, PetscInt* nconn, moab::EntityHandle **conn); 95 PETSC_EXTERN PetscErrorCode DMMoabGetVertexCoordinates(DM dm, PetscInt nconn, const moab::EntityHandle *conn, PetscReal *vpos); 96 PETSC_EXTERN PetscErrorCode DMMoabIsEntityOnBoundary(DM dm, const moab::EntityHandle ent, PetscBool* ent_on_boundary); 97 PETSC_EXTERN PetscErrorCode DMMoabCheckBoundaryVertices(DM dm, PetscInt nconn, const moab::EntityHandle *cnt, PetscBool* isbdvtx); 98 PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryMarkers(DM dm, const moab::Range **bdvtx, const moab::Range** bdelems, const moab::Range** bdfaces); 99 100 /* TODO: Replace nverts/coords with just moab::EntityHandle -- can also eliminate dim */ 101 /* TODO: Replace quad/npts with PetscDT */ 102 PETSC_EXTERN PetscErrorCode DMMoabFEMCreateQuadratureDefault ( const PetscInt dim, const PetscInt nverts, PetscQuadrature *quadrature ); 103 PETSC_EXTERN PetscErrorCode DMMoabFEMComputeBasis ( const PetscInt dim, const PetscInt nverts, const PetscReal *coordinates, const PetscQuadrature quadrature, PetscReal *phypts, PetscReal *jxw, PetscReal *phi, PetscReal **dphi); 104 PETSC_EXTERN PetscErrorCode DMMoabPToRMapping ( const PetscInt dim, const PetscInt nverts, const PetscReal *coordinates, const PetscReal* xphy, PetscReal* natparam, PetscReal* phi); 105 106 /* DM utility creation interface */ 107 PETSC_EXTERN PetscErrorCode DMMoabCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, const PetscReal*, PetscInt, PetscInt, DM*); 108 PETSC_EXTERN PetscErrorCode DMMoabLoadFromFile(MPI_Comm, PetscInt, PetscInt, const char*, const char*, DM*); 109 110 /* Uniform refinement hierarchy interface */ 111 PETSC_EXTERN PetscErrorCode DMMoabGenerateHierarchy(DM dm, PetscInt nlevels, PetscInt *ldegrees); 112 113 #endif 114