1 #pragma once 2 3 #include <petscvec.h> /*I "petscvec.h" I*/ 4 #include <petscmat.h> /*I "petscmat.h" I*/ 5 #include <petscdm.h> /*I "petscdm.h" I*/ 6 #include <petscdt.h> /*I "petscdt.h" I*/ 7 8 #include <string> 9 #include <moab/Core.hpp> /*I "moab/Core.hpp" I*/ 10 #ifdef MOAB_HAVE_MPI 11 #include <moab/ParallelComm.hpp> /*I "moab/ParallelComm.hpp" I*/ 12 #endif 13 14 /* The MBERR macro is used to save typing. It checks a MOAB error code 15 * (rval) and calls SETERRQ if not MB_SUCCESS. A message (msg) can 16 * also be passed in. */ 17 #define MBERR(msg, rval) PetscCheck(rval == moab::MB_SUCCESS, PETSC_COMM_SELF, PETSC_ERR_LIB, "MOAB ERROR (%i): %s", (PetscErrorCode)rval, msg) 18 #define MBERRNM(rval) PetscCheck(rval == moab::MB_SUCCESS, PETSC_COMM_SELF, PETSC_ERR_LIB, "MOAB ERROR (%i)", rval) 19 #define MBERRV(mbif, rval) \ 20 do { \ 21 if (rval != moab::MB_SUCCESS) { \ 22 std::string emsg; \ 23 mbif->get_last_error(emsg); \ 24 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "MOAB ERROR (%i): %s", (PetscErrorCode)rval, emsg.c_str()); \ 25 } \ 26 } while (0) 27 #define MBERRVM(mbif, msg, rval) \ 28 do { \ 29 if (rval != moab::MB_SUCCESS) { \ 30 std::string emsg; \ 31 mbif->get_last_error(emsg); \ 32 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_LIB, "MOAB ERROR (%i): %s :: %s", (PetscErrorCode)rval, msg, emsg.c_str()); \ 33 } \ 34 } while (0) 35 36 /* define enums for options to read and write MOAB files in parallel */ 37 typedef enum { 38 READ_PART, 39 READ_DELETE, 40 BCAST_DELETE 41 } MoabReadMode; 42 static const char *const MoabReadModes[] = {"READ_PART", "READ_DELETE", "BCAST_DELETE", "MoabReadMode", "", 0}; 43 typedef enum { 44 WRITE_PART, 45 FORMAT 46 } MoabWriteMode; 47 static const char *const MoabWriteModes[] = {"WRITE_PART", "FORMAT", "MoabWriteMode", "", 0}; 48 49 PETSC_EXTERN PetscErrorCode DMMoabCreate(MPI_Comm comm, DM *moab); 50 PETSC_EXTERN PetscErrorCode DMMoabCreateMoab(MPI_Comm comm, moab::Interface *mbiface, moab::Tag *ltog_tag, moab::Range *range, DM *moab); 51 PETSC_EXTERN PetscErrorCode DMMoabOutput(DM, const char *, const char *); 52 53 PETSC_EXTERN PetscErrorCode DMMoabSetInterface(DM, moab::Interface *); 54 PETSC_EXTERN PetscErrorCode DMMoabGetInterface(DM, moab::Interface **); 55 #ifdef MOAB_HAVE_MPI 56 PETSC_EXTERN PetscErrorCode DMMoabGetParallelComm(DM, moab::ParallelComm **); 57 #endif 58 59 PETSC_EXTERN PetscErrorCode DMMoabSetLocalVertices(DM, moab::Range *); 60 PETSC_EXTERN PetscErrorCode DMMoabGetAllVertices(DM, moab::Range *local); 61 PETSC_EXTERN PetscErrorCode DMMoabGetLocalVertices(DM, const moab::Range **, const moab::Range **); 62 PETSC_EXTERN PetscErrorCode DMMoabSetLocalElements(DM, moab::Range *); 63 PETSC_EXTERN PetscErrorCode DMMoabGetLocalElements(DM, const moab::Range **); 64 PETSC_EXTERN PetscErrorCode DMMoabSetLocalToGlobalTag(DM, moab::Tag); 65 PETSC_EXTERN PetscErrorCode DMMoabGetLocalToGlobalTag(DM, moab::Tag *); 66 PETSC_EXTERN PetscErrorCode DMMoabSetBlockSize(DM, PetscInt bs); 67 PETSC_EXTERN PetscErrorCode DMMoabGetBlockSize(DM, PetscInt *bs); 68 PETSC_EXTERN PetscErrorCode DMMoabSetBlockFills(DM, const PetscInt *, const PetscInt *); 69 PETSC_EXTERN PetscErrorCode DMMoabGetHierarchyLevel(DM, PetscInt *); 70 71 PETSC_EXTERN PetscErrorCode DMMoabGetDimension(DM dm, PetscInt *dim); 72 PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryEntities(DM dm, moab::Range *, moab::Range *, moab::Range *); 73 PETSC_EXTERN PetscErrorCode DMMoabGetMaterialBlock(DM dm, const moab::EntityHandle, PetscInt *); 74 75 PETSC_EXTERN PetscErrorCode DMMoabGetSize(DM dm, PetscInt *, PetscInt *); 76 PETSC_EXTERN PetscErrorCode DMMoabGetLocalSize(DM dm, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 77 PETSC_EXTERN PetscErrorCode DMMoabGetOffset(DM dm, PetscInt *); 78 79 PETSC_EXTERN PetscErrorCode DMMoabVecGetArrayRead(DM, Vec, void *); 80 PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArrayRead(DM, Vec, void *); 81 PETSC_EXTERN PetscErrorCode DMMoabVecGetArray(DM, Vec, void *); 82 PETSC_EXTERN PetscErrorCode DMMoabVecRestoreArray(DM, Vec, void *); 83 84 PETSC_EXTERN PetscErrorCode DMMoabCreateVector(DM dm, moab::Tag tag, const moab::Range *range, PetscBool serial, PetscBool destroy_tag, Vec *X); 85 PETSC_EXTERN PetscErrorCode DMMoabGetVecTag(Vec vec, moab::Tag *tag); 86 PETSC_EXTERN PetscErrorCode DMMoabGetVecRange(Vec vec, moab::Range *range); 87 88 PETSC_EXTERN PetscErrorCode DMMoabSetFieldVector(DM, PetscInt, Vec); 89 PETSC_EXTERN PetscErrorCode DMMoabSetGlobalFieldVector(DM, Vec); 90 91 PETSC_EXTERN PetscErrorCode DMMoabCreateVertices(DM, const PetscReal *coords, PetscInt nverts, moab::Range *); 92 PETSC_EXTERN PetscErrorCode DMMoabCreateElement(DM, const moab::EntityType type, const moab::EntityHandle *conn, PetscInt nverts, moab::EntityHandle *elem); 93 PETSC_EXTERN PetscErrorCode DMMoabCreateSubmesh(DM dm, DM *newdm); 94 PETSC_EXTERN PetscErrorCode DMMoabRenumberMeshEntities(DM dm); 95 96 PETSC_EXTERN PetscErrorCode DMMoabGetFieldName(DM dm, PetscInt field, const char **fieldName); 97 PETSC_EXTERN PetscErrorCode DMMoabSetFieldName(DM dm, PetscInt field, const char *fieldName); 98 PETSC_EXTERN PetscErrorCode DMMoabSetFieldNames(DM dm, PetscInt nfields, const char *fields[]); 99 PETSC_EXTERN PetscErrorCode DMMoabGetFieldDof(DM dm, moab::EntityHandle point, PetscInt field, PetscInt *dof); 100 PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofs(DM dm, PetscInt npoints, const moab::EntityHandle *points, PetscInt field, PetscInt *dof); 101 PETSC_EXTERN PetscErrorCode DMMoabGetFieldDofsLocal(DM dm, PetscInt npoints, const moab::EntityHandle *points, PetscInt field, PetscInt *dof); 102 PETSC_EXTERN PetscErrorCode DMMoabGetDofs(DM dm, PetscInt npoints, const moab::EntityHandle *points, PetscInt *dof); 103 PETSC_EXTERN PetscErrorCode DMMoabGetDofsLocal(DM dm, PetscInt npoints, const moab::EntityHandle *points, PetscInt *dof); 104 PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlocked(DM dm, PetscInt npoints, const moab::EntityHandle *points, PetscInt *dof); 105 PETSC_EXTERN PetscErrorCode DMMoabGetDofsBlockedLocal(DM dm, PetscInt npoints, const moab::EntityHandle *points, PetscInt *dof); 106 107 PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlocked(DM dm, PetscInt **dof); 108 PETSC_EXTERN PetscErrorCode DMMoabGetVertexDofsBlockedLocal(DM dm, PetscInt **dof); 109 110 /* discretization and assembly specific DMMoab interface functions */ 111 PETSC_EXTERN PetscErrorCode DMMoabGetElementConnectivity(DM dm, moab::EntityHandle ehandle, PetscInt *nconn, const moab::EntityHandle **conn); 112 PETSC_EXTERN PetscErrorCode DMMoabGetVertexConnectivity(DM dm, moab::EntityHandle ehandle, PetscInt *nconn, moab::EntityHandle **conn); 113 PETSC_EXTERN PetscErrorCode DMMoabRestoreVertexConnectivity(DM dm, moab::EntityHandle ehandle, PetscInt *nconn, moab::EntityHandle **conn); 114 PETSC_EXTERN PetscErrorCode DMMoabGetVertexCoordinates(DM dm, PetscInt nconn, const moab::EntityHandle *conn, PetscReal *vpos); 115 PETSC_EXTERN PetscErrorCode DMMoabIsEntityOnBoundary(DM dm, const moab::EntityHandle ent, PetscBool *ent_on_boundary); 116 PETSC_EXTERN PetscErrorCode DMMoabCheckBoundaryVertices(DM dm, PetscInt nconn, const moab::EntityHandle *cnt, PetscBool *isbdvtx); 117 PETSC_EXTERN PetscErrorCode DMMoabGetBoundaryMarkers(DM dm, const moab::Range **bdvtx, const moab::Range **bdelems, const moab::Range **bdfaces); 118 119 /* TODO: Replace nverts/coords with just moab::EntityHandle -- can also eliminate dim */ 120 /* TODO: Replace quad/npts with PetscDT */ 121 PETSC_EXTERN PetscErrorCode DMMoabFEMCreateQuadratureDefault(const PetscInt dim, const PetscInt nverts, PetscQuadrature *quadrature); 122 PETSC_EXTERN PetscErrorCode DMMoabFEMComputeBasis(const PetscInt dim, const PetscInt nverts, const PetscReal *coordinates, const PetscQuadrature quadrature, PetscReal *phypts, PetscReal *jxw, PetscReal *phi, PetscReal **dphi); 123 PETSC_EXTERN PetscErrorCode DMMoabPToRMapping(const PetscInt dim, const PetscInt nverts, const PetscReal *coordinates, const PetscReal *xphy, PetscReal *natparam, PetscReal *phi); 124 125 /* DM utility creation interface */ 126 PETSC_EXTERN PetscErrorCode DMMoabCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, const PetscReal *, PetscInt, PetscInt, DM *); 127 PETSC_EXTERN PetscErrorCode DMMoabLoadFromFile(MPI_Comm, PetscInt, PetscInt, const char *, const char *, DM *); 128 129 /* Uniform refinement hierarchy interface */ 130 PETSC_EXTERN PetscErrorCode DMMoabGenerateHierarchy(DM dm, PetscInt nlevels, PetscInt *ldegrees); 131