xref: /petsc/include/petscdmplex.h (revision 0aef6b921090d1d322dbdd3396301fb73bb78da2) 
1552f7358SJed Brown /*
2552f7358SJed Brown   DMPlex, for parallel unstructured distributed mesh problems.
3552f7358SJed Brown */
4552f7358SJed Brown #if !defined(__PETSCDMPLEX_H)
5552f7358SJed Brown #define __PETSCDMPLEX_H
6552f7358SJed Brown 
7552f7358SJed Brown #include <petscdm.h>
8a0845e3aSMatthew G. Knepley #include <petscdt.h>
9a0845e3aSMatthew G. Knepley #include <petscfe.h>
100bacfa0aSMatthew G. Knepley #include <petscfv.h>
11799f573fSMatthew G. Knepley #include <petscsftypes.h>
12552f7358SJed Brown 
1377623264SMatthew G. Knepley PETSC_EXTERN PetscClassId PETSCPARTITIONER_CLASSID;
1477623264SMatthew G. Knepley 
1577623264SMatthew G. Knepley /*J
1677623264SMatthew G. Knepley   PetscPartitionerType - String with the name of a PETSc graph partitioner
1777623264SMatthew G. Knepley 
1877623264SMatthew G. Knepley   Level: beginner
1977623264SMatthew G. Knepley 
2077623264SMatthew G. Knepley .seealso: PetscPartitionerSetType(), PetscPartitioner
2177623264SMatthew G. Knepley J*/
2277623264SMatthew G. Knepley typedef const char *PetscPartitionerType;
2377623264SMatthew G. Knepley #define PETSCPARTITIONERCHACO    "chaco"
2477623264SMatthew G. Knepley #define PETSCPARTITIONERPARMETIS "parmetis"
2577623264SMatthew G. Knepley #define PETSCPARTITIONERSHELL    "shell"
26555a9cf8SMatthew G. Knepley #define PETSCPARTITIONERSIMPLE   "simple"
2777623264SMatthew G. Knepley 
2877623264SMatthew G. Knepley PETSC_EXTERN PetscFunctionList PetscPartitionerList;
2977623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerCreate(MPI_Comm, PetscPartitioner *);
3077623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerDestroy(PetscPartitioner *);
3177623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerSetType(PetscPartitioner, PetscPartitionerType);
3277623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerGetType(PetscPartitioner, PetscPartitionerType *);
3377623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerSetUp(PetscPartitioner);
3477623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerSetFromOptions(PetscPartitioner);
358aec7d55SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscPartitionerViewFromOptions(PetscPartitioner A,PetscObject B,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,B,name);}
3677623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerView(PetscPartitioner, PetscViewer);
3777623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerRegister(const char [], PetscErrorCode (*)(PetscPartitioner));
3877623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerRegisterDestroy(void);
3977623264SMatthew G. Knepley 
40f8987ae8SMichael Lange PETSC_EXTERN PetscErrorCode PetscPartitionerPartition(PetscPartitioner, DM, PetscSection, IS *);
4177623264SMatthew G. Knepley 
425680f57bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerShellSetPartition(PetscPartitioner, PetscInt, const PetscInt[], const PetscInt[]);
4377623264SMatthew G. Knepley 
44552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreate(MPI_Comm, DM*);
4527c04023SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCohesiveSubmesh(DM, PetscBool, const char [], PetscInt, DM *);
460fde5641SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellList(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const double[], DM*);
4706bbee04SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFromDAG(DM, PetscInt, const PetscInt [], const PetscInt [], const PetscInt [], const PetscInt [], const PetscScalar []);
488415267dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceCell(MPI_Comm, PetscInt, PetscBool, DM*);
49552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetChart(DM, PetscInt *, PetscInt *);
50552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetChart(DM, PetscInt, PetscInt);
51552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeSize(DM, PetscInt, PetscInt *);
52552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetConeSize(DM, PetscInt, PetscInt);
53feb68dd6SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexAddConeSize(DM, PetscInt, PetscInt);
54552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]);
55552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetCone(DM, PetscInt, const PetscInt[]);
569f074e33SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertCone(DM, PetscInt, PetscInt, PetscInt);
5777c88f5bSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertConeOrientation(DM, PetscInt, PetscInt, PetscInt);
58552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]);
59552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetConeOrientation(DM, PetscInt, const PetscInt[]);
60552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSupportSize(DM, PetscInt, PetscInt *);
61552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSupportSize(DM, PetscInt, PetscInt);
62552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]);
63552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSupport(DM, PetscInt, const PetscInt[]);
64552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexInsertSupport(DM, PetscInt, PetscInt, PetscInt);
65552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeSection(DM, PetscSection *);
668cb4d582SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetSupportSection(DM, PetscSection *);
67552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCones(DM, PetscInt *[]);
68552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientations(DM, PetscInt *[]);
69552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetMaxSizes(DM, PetscInt *, PetscInt *);
70552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSymmetrize(DM);
71552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexStratify(DM);
724e3744c5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexEqual(DM,DM,PetscBool*);
73cb11e54dSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexReverseCell(DM, PetscInt);
74d27a0f52SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexOrient(DM);
7575d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInterpolate(DM, DM *);
764e3744c5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexUninterpolate(DM, DM *);
7775d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLoad(PetscViewer, DM);
78e101f074SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPreallocateOperator(DM, PetscInt, PetscInt[], PetscInt[], PetscInt[], PetscInt[], Mat, PetscBool);
79552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetPointLocal(DM,PetscInt,PetscInt*,PetscInt*);
80552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexPointLocalRead(DM,PetscInt,const PetscScalar*,const void*);
81a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointLocalRef(DM,PetscInt,PetscScalar*,void*);
82a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetPointLocalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*);
83a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*);
841ce3176fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,const void*);
85552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobal(DM,PetscInt,PetscInt*,PetscInt*);
86552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRead(DM,PetscInt,const PetscScalar*,const void*);
87a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRef(DM,PetscInt,PetscScalar*,void*);
88a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*);
89a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*);
9033879625SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,const void*);
91552f7358SJed Brown 
92552f7358SJed Brown /*S
93552f7358SJed Brown   DMLabel - Object which encapsulates a subset of the mesh from this DM
94552f7358SJed Brown 
95552f7358SJed Brown   Level: developer
96552f7358SJed Brown 
97552f7358SJed Brown   Concepts: grids, grid refinement
98552f7358SJed Brown 
99552f7358SJed Brown .seealso:  DM, DMPlexCreate(), DMPlexCreateLabel()
100552f7358SJed Brown S*/
101552f7358SJed Brown typedef struct _n_DMLabel *DMLabel;
102552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelCreate(const char [], DMLabel *);
103552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelView(DMLabel, PetscViewer);
104552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelDestroy(DMLabel *);
105f807ecf7SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMLabelDuplicate(DMLabel, DMLabel *);
10685de2ee3SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMLabelGetName(DMLabel, const char **);
107552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelGetValue(DMLabel, PetscInt, PetscInt *);
108552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelSetValue(DMLabel, PetscInt, PetscInt);
109552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelClearValue(DMLabel, PetscInt, PetscInt);
110c52d6403SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMLabelInsertIS(DMLabel, IS, PetscInt);
111552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelGetNumValues(DMLabel, PetscInt *);
112a9e27379SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMLabelGetStratumBounds(DMLabel, PetscInt, PetscInt *, PetscInt *);
113552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelGetValueIS(DMLabel, IS *);
1140225b034SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMLabelStratumHasPoint(DMLabel, PetscInt, PetscInt, PetscBool *);
115552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelGetStratumSize(DMLabel, PetscInt, PetscInt *);
116552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelGetStratumIS(DMLabel, PetscInt, IS *);
117552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelClearStratum(DMLabel, PetscInt);
11891d07b70SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMLabelCreateIndex(DMLabel, PetscInt, PetscInt);
11991d07b70SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMLabelDestroyIndex(DMLabel);
12046b85170SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMLabelHasValue(DMLabel, PetscInt, PetscBool *);
12191d07b70SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMLabelHasPoint(DMLabel, PetscInt, PetscBool *);
122ae932cb5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMLabelFilter(DMLabel, PetscInt, PetscInt);
123f186335cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMLabelPermute(DMLabel, IS, DMLabel *);
1242eb1fa14SMichael Lange PETSC_EXTERN PetscErrorCode DMLabelDistribute(DMLabel, PetscSF, DMLabel *);
125552f7358SJed Brown 
126552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateLabel(DM, const char []);
127552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetLabelValue(DM, const char[], PetscInt, PetscInt *);
128552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetLabelValue(DM, const char[], PetscInt, PetscInt);
129552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexClearLabelValue(DM, const char[], PetscInt, PetscInt);
130552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetLabelSize(DM, const char[], PetscInt *);
131552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetLabelIdIS(DM, const char[], IS *);
132552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetStratumSize(DM, const char [], PetscInt, PetscInt *);
133552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetStratumIS(DM, const char [], PetscInt, IS *);
134552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexClearLabelStratum(DM, const char[], PetscInt);
135a85475f2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetLabelOutput(DM, const char[], PetscBool *);
136a85475f2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetLabelOutput(DM, const char[], PetscBool);
137552f7358SJed Brown PETSC_EXTERN PetscErrorCode PetscSectionCreateGlobalSectionLabel(PetscSection, PetscSF, PetscBool, DMLabel, PetscInt, PetscSection *);
138552f7358SJed Brown 
139552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetNumLabels(DM, PetscInt *);
140552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetLabelName(DM, PetscInt, const char **);
141552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexHasLabel(DM, const char [], PetscBool *);
142552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetLabel(DM, const char *, DMLabel *);
143a85475f2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetLabelByNum(DM, PetscInt, DMLabel *);
144552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexAddLabel(DM, DMLabel);
145552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRemoveLabel(DM, const char [], DMLabel *);
146552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCellNumbering(DM, IS *);
147552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetVertexNumbering(DM, IS *);
148ef48cebcSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreatePointNumbering(DM, IS *);
149552f7358SJed Brown 
15075d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepth(DM, PetscInt *);
1513ded2ed9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepthLabel(DM, DMLabel *);
15275d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepthStratum(DM, PetscInt, PetscInt *, PetscInt *);
15375d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetHeightStratum(DM, PetscInt, PetscInt *, PetscInt *);
15475d3a19aSMatthew G. Knepley 
15575d3a19aSMatthew G. Knepley /* Topological Operations */
156552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
157552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetFullMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
158552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
159552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
160552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetFullJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
161552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
162552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]);
163552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]);
164552f7358SJed Brown 
16575d3a19aSMatthew G. Knepley /* Mesh Generation */
166552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGenerate(DM, const char [], PetscBool , DM *);
167930319cbSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCopyCoordinates(DM, DM);
1685c386225SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCopyLabels(DM, DM);
1691df5d5c5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateDoublet(MPI_Comm, PetscInt, PetscBool, PetscBool, PetscBool, PetscReal, DM *);
17026492d91SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSquareBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []);
171552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateCubeBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []);
1721a77d578SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSquareMesh(DM, const PetscReal [], const PetscReal [], const PetscInt [], DMBoundaryType, DMBoundaryType);
173552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, DM *);
174bff4a2f0SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateHexBoxMesh(MPI_Comm, PetscInt, const PetscInt[], DMBoundaryType, DMBoundaryType, DMBoundaryType, DM *);
175552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateConeSection(DM, PetscSection *);
176459e96c1SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInvertCell(PetscInt, PetscInt, int []);
177f05c90a3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLocalizeCoordinate(DM, const PetscScalar[], PetscScalar[]);
178d49fcaecSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLocalizeCoordinates(DM);
179ca8062c8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckSymmetry(DM);
18058723a97SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckSkeleton(DM, PetscBool, PetscInt);
1819bf0dad6SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckFaces(DM, PetscBool, PetscInt);
18275d3a19aSMatthew G. Knepley 
183d9deefdfSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTriangleSetOptions(DM, const char *);
184776fd405SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTetgenSetOptions(DM, const char *);
185d9deefdfSMatthew G. Knepley 
18675d3a19aSMatthew G. Knepley /* Mesh Partitioning and Distribution */
187552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateNeighborCSR(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **);
1885680f57bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetPartitioner(DM, PetscPartitioner *);
18971bb2955SLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexSetPartitioner(DM, PetscPartitioner);
190ac17c9edSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreatePartition(DM, const char[], PetscInt, PetscBool, PetscSection *, IS *, PetscSection *, IS *);
19145800214SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionerGraph(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **);
192552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionClosure(DM, PetscSection, IS, PetscSection *, IS *);
1931fd9873aSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelInvert(DM, DMLabel, PetscSF, DMLabel);
1945abbe4feSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelClosure(DM, DMLabel);
19524d039d7SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelAdjacency(DM, DMLabel);
196aa3148a8SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelCreateSF(DM, DMLabel, PetscSF *);
19780cf41d5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistribute(DM, PetscInt, PetscSF*, DM*);
198b9f40539SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexDistributeOverlap(DM, PetscInt, PetscSF *, DM *);
199552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexDistributeField(DM,PetscSF,PetscSection,Vec,PetscSection,Vec);
200b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistributeFieldIS(DM, PetscSF, PetscSection, IS, PetscSection, IS *);
201552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexDistributeData(DM,PetscSF,PetscSection,MPI_Datatype,void*,PetscSection,void**);
20245800214SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexMigrate(DM, PetscSF, DM);
20370034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseCone(DM,PetscBool);
20470034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseCone(DM,PetscBool*);
20570034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseClosure(DM,PetscBool);
20670034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseClosure(DM,PetscBool*);
207a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM,PetscBool);
208a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM,PetscBool*);
20970034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetAdjacency(DM, PetscInt, PetscInt *, PetscInt *[]);
21075d3a19aSMatthew G. Knepley 
211f5cedc29SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetOrdering(DM, MatOrderingType, IS *);
212f5cedc29SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPermute(DM, IS, DM *);
213f5cedc29SMatthew G. Knepley 
214b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateProcessSF(DM, PetscSF, IS *, PetscSF *);
215b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM, PetscSF, PetscSection, IS, PetscSection, IS, IS *, PetscSF *);
216b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistributeOwnership(DM, PetscSection, IS *, PetscSection, IS *);
217a9f1d5b2SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateOverlap(DM, PetscInt, PetscSection, IS, PetscSection, IS, DMLabel *);
21846f9b1c3SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapMigrationSF(DM, PetscSF, PetscSF *);
21945800214SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexStratifyMigrationSF(DM, PetscSF, PetscSF *);
220b0a623aaSMatthew G. Knepley 
22175d3a19aSMatthew G. Knepley /* Submesh Support */
2223cf72582SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSubmesh(DM, DMLabel, PetscInt, DM*);
2233cf72582SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateHybridMesh(DM, DMLabel, DMLabel *, DM *);
224552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSubpointMap(DM, DMLabel*);
225552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSubpointMap(DM, DMLabel);
226552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateSubpointIS(DM, IS *);
227552f7358SJed Brown 
22809f723d9SJed Brown PETSC_EXTERN PetscErrorCode DMPlexMarkBoundaryFaces(DM, DMLabel);
2292be2b188SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelComplete(DM, DMLabel);
2300f66a230SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelCohesiveComplete(DM, DMLabel, DMLabel, PetscBool, DM);
2316cf0e42fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelAddCells(DM, DMLabel);
232552f7358SJed Brown 
23375d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRefinementLimit(DM, PetscReal *);
23475d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRefinementLimit(DM, PetscReal);
23575d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRefinementUniform(DM, PetscBool *);
23675d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRefinementUniform(DM, PetscBool);
2373913d7c8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetCoarseDM(DM, DM *);
2383913d7c8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetCoarseDM(DM, DM);
2392389894bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCoarsePointIS(DM, IS *);
240*0aef6b92SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRegularRefinement(DM, PetscBool *);
241*0aef6b92SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRegularRefinement(DM, PetscBool);
242552f7358SJed Brown 
24318ad9376SMatthew G. Knepley /* Support for cell-vertex meshes */
24418ad9376SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetNumFaceVertices(DM, PetscInt, PetscInt, PetscInt *);
245f5d69827SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetOrientedFace(DM, PetscInt, PetscInt, const PetscInt [], PetscInt, PetscInt [], PetscInt [], PetscInt [], PetscBool *);
24618ad9376SMatthew G. Knepley 
2470f0bf202SMatthew G. Knepley /* Geometry Support */
2480f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetMinRadius(DM, PetscReal *);
2490f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetMinRadius(DM, PetscReal);
2500f0bf202SMatthew G. Knepley 
251834e62ceSMatthew G. Knepley /* FVM Support */
252cc08537eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFVM(DM, PetscInt, PetscReal *, PetscReal [], PetscReal []);
2530f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFVM(DM, Vec *, Vec *);
254856ac710SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGradientFVM(DM, PetscFV, Vec, Vec, DM *);
255834e62ceSMatthew G. Knepley 
256552f7358SJed Brown /* FEM Support */
257d7ddef95SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValues(DM, Vec, PetscReal, Vec, Vec, Vec);
258d7ddef95SMatthew G. Knepley 
259ab1d0545SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSection(DM, PetscInt, PetscInt, const PetscInt [], const PetscInt [], PetscInt, const PetscInt [], const IS [], const IS [], IS, PetscSection *);
26075d3a19aSMatthew G. Knepley 
2618e0841e0SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryAffineFEM(DM, PetscInt, PetscReal *, PetscReal *, PetscReal *, PetscReal *);
2628e0841e0SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFEM(DM, PetscInt, PetscFE, PetscReal *, PetscReal *, PetscReal *, PetscReal *);
263c0d900a5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFEM(DM, Vec *);
2647c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexVecGetClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]);
2657c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexVecRestoreClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]);
266552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexVecSetClosure(DM, PetscSection, Vec, PetscInt, const PetscScalar[], InsertMode);
2677c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexMatSetClosure(DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
2687773e69fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscInt *, PetscInt **);
2697773e69fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexRestoreClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscInt *, PetscInt **);
2700405ed22SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
2717c927364SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, PetscInt, PetscInt[], PetscInt[]);
272ee72d991SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateClosureIndex(DM, PetscSection);
273552f7358SJed Brown 
274ca522641SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFromFile(MPI_Comm, const char[], PetscBool, DM *);
275552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateExodus(MPI_Comm, PetscInt, PetscBool, DM *);
27633751fbdSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateExodusFromFile(MPI_Comm, const char [], PetscBool, DM *);
2775bb3eff3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCGNS(MPI_Comm, PetscInt, PetscBool, DM *);
27844cd5272SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateCGNSFromFile(MPI_Comm, const char[], PetscBool, DM *);
279331830f3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateGmsh(MPI_Comm, PetscViewer, PetscBool, DM *);
2807d282ae0SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateGmshFromFile(MPI_Comm, const char [], PetscBool, DM *);
2812f0bd6dcSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateFluent(MPI_Comm, PetscViewer, PetscBool, DM *);
2822f0bd6dcSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateFluentFromFile(MPI_Comm, const char [], PetscBool, DM *);
283552f7358SJed Brown 
284552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexConstructGhostCells(DM, const char [], PetscInt *, DM *);
285a89082eeSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexConstructCohesiveCells(DM, DMLabel, DM *);
286552f7358SJed Brown 
287770b213bSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexGetHybridBounds(DM, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
288770b213bSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexSetHybridBounds(DM, PetscInt, PetscInt, PetscInt, PetscInt);
289552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetVTKCellHeight(DM, PetscInt *);
290552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetVTKCellHeight(DM, PetscInt);
291552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexVTKWriteAll(PetscObject, PetscViewer);
292552f7358SJed Brown 
293552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetScale(DM, PetscUnit, PetscReal *);
294552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetScale(DM, PetscUnit, PetscReal);
295552f7358SJed Brown 
2966c73c22cSMatthew G. Knepley typedef struct _n_Boundary *DMBoundary;
2970e0f25f2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexAddBoundary(DM, PetscBool, const char[], const char[], PetscInt, PetscInt, const PetscInt *, void (*)(), PetscInt, const PetscInt *, void *);
2986c73c22cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetNumBoundary(DM, PetscInt *);
2990e0f25f2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetBoundary(DM, PetscInt, PetscBool *, const char **, const char **, PetscInt *, PetscInt *, const PetscInt **, void (**)(), PetscInt *, const PetscInt **, void **);
3000225b034SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexIsBoundaryPoint(DM, PetscInt, PetscBool *);
3018e136ac0SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCopyBoundary(DM, DM);
3026c73c22cSMatthew G. Knepley 
303552f7358SJed Brown typedef struct {
304552f7358SJed Brown   DM    dm;
305552f7358SJed Brown   Vec   u; /* The base vector for the Jacbobian action J(u) x */
306552f7358SJed Brown   Mat   J; /* Preconditioner for testing */
307552f7358SJed Brown   void *user;
308552f7358SJed Brown } JacActionCtx;
309552f7358SJed Brown 
3103351dd3dSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesFEM(DM, Vec);
311b29cfa1cSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetMaxProjectionHeight(DM, PetscInt);
312b29cfa1cSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetMaxProjectionHeight(DM, PetscInt*);
313ad917190SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexProjectFunction(DM, PetscErrorCode (**)(PetscInt, const PetscReal [], PetscInt, PetscScalar *, void *), void **, InsertMode, Vec);
314ad917190SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexProjectFunctionLocal(DM, PetscErrorCode (**)(PetscInt, const PetscReal [], PetscInt, PetscScalar *, void *), void **, InsertMode, Vec);
3151ee2f23fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexProjectFieldLocal(DM, Vec, void (**)(const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscReal [], PetscScalar []), InsertMode, Vec);
316ad917190SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2Diff(DM, PetscErrorCode (**)(PetscInt, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal *);
317ad917190SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2GradientDiff(DM, PetscErrorCode (**)(PetscInt, const PetscReal [], const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, const PetscReal [], PetscReal *);
318ad917190SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2FieldDiff(DM, PetscErrorCode (**)(PetscInt, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal[]);
3190f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeIntegralFEM(DM, Vec, PetscReal *, void *);
320bceba477SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorFEM(DM, DM, Mat, void *);
3217c927364SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorFEM(DM, DM, VecScatter *, void *);
3221c41a8caSMatthew G. Knepley 
323026175e5SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBody(DM, MatNullSpace *);
324026175e5SToby Isaac 
3250f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSNESComputeResidualFEM(DM, Vec, Vec, void *);
3260f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianFEM(DM, Vec, Mat, Mat,void *);
3270f2d7e86SMatthew G. Knepley 
328924a1b8fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *);
329adbe6fbbSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeIFunctionFEM(DM, PetscReal, Vec, Vec, Vec, void *);
330adbe6fbbSMatthew G. Knepley 
3311c41a8caSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *);
332a68b90caSToby Isaac 
333a17985deSToby Isaac /* anchors */
334a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetAnchors(DM, PetscSection*, IS*);
335a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetAnchors(DM, PetscSection, IS);
336d6a7ad0dSToby Isaac /* tree */
337d6a7ad0dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetReferenceTree(DM, DM);
338d6a7ad0dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetReferenceTree(DM, DM*);
339dcbd3bf7SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexReferenceTreeGetChildSymmetry(DM, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *);
340da43764aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCreateDefaultReferenceTree(MPI_Comm, PetscInt, PetscBool, DM*);
341b2f41788SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetTree(DM, PetscSection, PetscInt [], PetscInt []);
342b2f41788SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTree(DM, PetscSection *, PetscInt *[], PetscInt *[], PetscSection *, PetscInt *[]);
343d961a43aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTreeParent(DM, PetscInt, PetscInt *, PetscInt *);
344d961a43aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTreeChildren(DM, PetscInt, PetscInt *, const PetscInt *[]);
3456f5f1567SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexTreeRefineCell(DM, PetscInt, DM *);
346552f7358SJed Brown #endif
347