xref: /petsc/include/petscdmplex.h (revision 27d0e99a0845f279d25f36eb29f4a4212ca97ece) 
1552f7358SJed Brown /*
2552f7358SJed Brown   DMPlex, for parallel unstructured distributed mesh problems.
3552f7358SJed Brown */
426bd1501SBarry Smith #if !defined(PETSCDMPLEX_H)
526bd1501SBarry Smith #define PETSCDMPLEX_H
6552f7358SJed Brown 
7224ef0b1SMatthew Knepley #include <petscsection.h>
8552f7358SJed Brown #include <petscdm.h>
986fe8405SMatthew G. Knepley #include <petscdmplextypes.h>
10a0845e3aSMatthew G. Knepley #include <petscdt.h>
11a0845e3aSMatthew G. Knepley #include <petscfe.h>
120bacfa0aSMatthew G. Knepley #include <petscfv.h>
13799f573fSMatthew G. Knepley #include <petscsftypes.h>
14c330f8ffSToby Isaac #include <petscdmfield.h>
15552f7358SJed Brown 
1677623264SMatthew G. Knepley PETSC_EXTERN PetscClassId PETSCPARTITIONER_CLASSID;
1777623264SMatthew G. Knepley 
1877623264SMatthew G. Knepley /*J
1977623264SMatthew G. Knepley   PetscPartitionerType - String with the name of a PETSc graph partitioner
2077623264SMatthew G. Knepley 
2177623264SMatthew G. Knepley   Level: beginner
2277623264SMatthew G. Knepley 
2377623264SMatthew G. Knepley .seealso: PetscPartitionerSetType(), PetscPartitioner
2477623264SMatthew G. Knepley J*/
2577623264SMatthew G. Knepley typedef const char *PetscPartitionerType;
2677623264SMatthew G. Knepley #define PETSCPARTITIONERCHACO    "chaco"
2777623264SMatthew G. Knepley #define PETSCPARTITIONERPARMETIS "parmetis"
28137cd93aSLisandro Dalcin #define PETSCPARTITIONERPTSCOTCH "ptscotch"
2977623264SMatthew G. Knepley #define PETSCPARTITIONERSHELL    "shell"
30555a9cf8SMatthew G. Knepley #define PETSCPARTITIONERSIMPLE   "simple"
316462276dSToby Isaac #define PETSCPARTITIONERGATHER   "gather"
32de68236aSVaclav Hapla #define PETSCPARTITIONERMATPARTITIONING "matpartitioning"
3377623264SMatthew G. Knepley 
3477623264SMatthew G. Knepley PETSC_EXTERN PetscFunctionList PetscPartitionerList;
3577623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerCreate(MPI_Comm, PetscPartitioner *);
3677623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerDestroy(PetscPartitioner *);
3777623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerSetType(PetscPartitioner, PetscPartitionerType);
3877623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerGetType(PetscPartitioner, PetscPartitionerType *);
3977623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerSetUp(PetscPartitioner);
4077623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerSetFromOptions(PetscPartitioner);
418aec7d55SBarry Smith PETSC_STATIC_INLINE PetscErrorCode PetscPartitionerViewFromOptions(PetscPartitioner A,PetscObject B,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,B,name);}
4277623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerView(PetscPartitioner, PetscViewer);
4377623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerRegister(const char [], PetscErrorCode (*)(PetscPartitioner));
4477623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerRegisterDestroy(void);
4577623264SMatthew G. Knepley 
46f8987ae8SMichael Lange PETSC_EXTERN PetscErrorCode PetscPartitionerPartition(PetscPartitioner, DM, PetscSection, IS *);
4777623264SMatthew G. Knepley 
485680f57bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerShellSetPartition(PetscPartitioner, PetscInt, const PetscInt[], const PetscInt[]);
49df8115dbSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerShellSetRandom(PetscPartitioner, PetscBool);
50df8115dbSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerShellGetRandom(PetscPartitioner, PetscBool *);
5177623264SMatthew G. Knepley 
52de68236aSVaclav Hapla PETSC_EXTERN PetscErrorCode PetscPartitionerMatPartitioningGetMatPartitioning(PetscPartitioner part, MatPartitioning *mp);
53de68236aSVaclav Hapla 
54552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreate(MPI_Comm, DM*);
5527c04023SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCohesiveSubmesh(DM, PetscBool, const char [], PetscInt, DM *);
560fde5641SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellList(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const double[], DM*);
57fba955ccSBarry Smith PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellListParallel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const PetscReal[], PetscSF *, DM *);
5806bbee04SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFromDAG(DM, PetscInt, const PetscInt [], const PetscInt [], const PetscInt [], const PetscInt [], const PetscScalar []);
598415267dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceCell(MPI_Comm, PetscInt, PetscBool, DM*);
60a9074c1eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetOptionsPrefix(DM, const char []);
61552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetChart(DM, PetscInt *, PetscInt *);
62552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetChart(DM, PetscInt, PetscInt);
63552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeSize(DM, PetscInt, PetscInt *);
64552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetConeSize(DM, PetscInt, PetscInt);
65feb68dd6SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexAddConeSize(DM, PetscInt, PetscInt);
66552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]);
670ce7577fSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexGetConeTuple(DM, IS, PetscSection *, IS *);
68af9eab45SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexGetConeRecursive(DM, IS, PetscInt *, IS *[], PetscSection *[]);
69af9eab45SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexRestoreConeRecursive(DM, IS, PetscInt *, IS *[], PetscSection *[]);
70af9eab45SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexGetConeRecursiveVertices(DM, IS, IS *);
71552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetCone(DM, PetscInt, const PetscInt[]);
729f074e33SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertCone(DM, PetscInt, PetscInt, PetscInt);
7377c88f5bSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertConeOrientation(DM, PetscInt, PetscInt, PetscInt);
74552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]);
75552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetConeOrientation(DM, PetscInt, const PetscInt[]);
76552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSupportSize(DM, PetscInt, PetscInt *);
77552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSupportSize(DM, PetscInt, PetscInt);
78552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]);
79552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSupport(DM, PetscInt, const PetscInt[]);
80552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexInsertSupport(DM, PetscInt, PetscInt, PetscInt);
81552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeSection(DM, PetscSection *);
828cb4d582SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetSupportSection(DM, PetscSection *);
83552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCones(DM, PetscInt *[]);
84552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientations(DM, PetscInt *[]);
85552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetMaxSizes(DM, PetscInt *, PetscInt *);
86552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSymmetrize(DM);
87552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexStratify(DM);
884e3744c5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexEqual(DM,DM,PetscBool*);
89cb11e54dSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexReverseCell(DM, PetscInt);
90fa01033eSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexOrientCell(DM,PetscInt,PetscInt,const PetscInt[]);
91*27d0e99aSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCompareOrientations(DM, PetscInt, PetscInt, const PetscInt [], PetscInt *, PetscBool *);
92d27a0f52SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexOrient(DM);
9375d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInterpolate(DM, DM *);
944e3744c5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexUninterpolate(DM, DM *);
95e53487d3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInterpolatePointSF(DM, PetscSF);
96e101f074SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPreallocateOperator(DM, PetscInt, PetscInt[], PetscInt[], PetscInt[], PetscInt[], Mat, PetscBool);
97552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetPointLocal(DM,PetscInt,PetscInt*,PetscInt*);
98081a2d76SSatish Balay PETSC_EXTERN PetscErrorCode DMPlexPointLocalRead(DM,PetscInt,const PetscScalar*,void*);
99a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointLocalRef(DM,PetscInt,PetscScalar*,void*);
100a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetPointLocalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*);
101a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*);
102081a2d76SSatish Balay PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,void*);
103552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobal(DM,PetscInt,PetscInt*,PetscInt*);
104552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRead(DM,PetscInt,const PetscScalar*,const void*);
105a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRef(DM,PetscInt,PetscScalar*,void*);
106a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*);
107a89cf0ddSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*);
108081a2d76SSatish Balay PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*, void*);
109552f7358SJed Brown 
1108b51c812SSatish Balay PETSC_EXTERN PetscErrorCode DMPlexFilter(DM, DMLabel, PetscInt, DM *);
111552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCellNumbering(DM, IS *);
112552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetVertexNumbering(DM, IS *);
113ef48cebcSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreatePointNumbering(DM, IS *);
11408a22f4bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateRankField(DM, Vec *);
11518e14f0cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateLabelField(DM, DMLabel, Vec *);
116552f7358SJed Brown 
11775d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepth(DM, PetscInt *);
1183ded2ed9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepthLabel(DM, DMLabel *);
11975d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepthStratum(DM, PetscInt, PetscInt *, PetscInt *);
12075d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetHeightStratum(DM, PetscInt, PetscInt *, PetscInt *);
12175d3a19aSMatthew G. Knepley 
12275d3a19aSMatthew G. Knepley /* Topological Operations */
123552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
124552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetFullMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
125552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
126552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
127552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetFullJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
128552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
129552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]);
130552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]);
131552f7358SJed Brown 
13275d3a19aSMatthew G. Knepley /* Mesh Generation */
133552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGenerate(DM, const char [], PetscBool , DM *);
1343a074057SBarry Smith PETSC_EXTERN PetscErrorCode DMPlexGenerateRegister(const char[],PetscErrorCode (*)(DM,PetscBool,DM*),PetscErrorCode (*)(DM,double*,DM*),PetscInt);
1353a074057SBarry Smith PETSC_EXTERN PetscErrorCode DMPlexGenerateRegisterAll(void);
1363a074057SBarry Smith PETSC_EXTERN PetscErrorCode DMPlexGenerateRegisterDestroy(void);
137930319cbSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCopyCoordinates(DM, DM);
1381df5d5c5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateDoublet(MPI_Comm, PetscInt, PetscBool, PetscBool, PetscBool, PetscReal, DM *);
13926492d91SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSquareBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []);
140552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateCubeBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []);
141768d5fceSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool, DM *);
14265a81367SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSphereMesh(MPI_Comm, PetscInt, PetscBool, DM *);
143dbc1dc17SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateHexCylinderMesh(MPI_Comm, PetscInt, DMBoundaryType, DM *);
14424119c2aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateWedgeCylinderMesh(MPI_Comm, PetscInt, PetscBool, DM *);
14500dabe28SStefano Zampini PETSC_EXTERN PetscErrorCode DMPlexCreateWedgeBoxMesh(MPI_Comm, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool, PetscBool, DM *);
14600dabe28SStefano Zampini PETSC_EXTERN PetscErrorCode DMPlexExtrude(DM, PetscInt, PetscReal, PetscBool, PetscBool, DM *);
147552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateConeSection(DM, PetscSection *);
148459e96c1SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInvertCell(PetscInt, PetscInt, int []);
149068a5610SStefano Zampini 
150ca8062c8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckSymmetry(DM);
15125c50c26SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCheckSkeleton(DM, PetscInt);
15225c50c26SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCheckFaces(DM, PetscInt);
153bb6a34a8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckGeometry(DM);
15403da9461SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCheckPointSF(DM);
155f84a5eb8SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCheckConesConformOnInterfaces(DM);
15643fa8764SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckCellShape(DM, PetscBool, PetscReal);
15775d3a19aSMatthew G. Knepley 
158d9deefdfSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTriangleSetOptions(DM, const char *);
159776fd405SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTetgenSetOptions(DM, const char *);
160d9deefdfSMatthew G. Knepley 
161d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFromFile(MPI_Comm, const char[], PetscBool, DM *);
162d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateExodus(MPI_Comm, PetscInt, PetscBool, DM *);
163d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateExodusFromFile(MPI_Comm, const char [], PetscBool, DM *);
164d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCGNS(MPI_Comm, PetscInt, PetscBool, DM *);
165d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCGNSFromFile(MPI_Comm, const char[], PetscBool, DM *);
166d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateGmsh(MPI_Comm, PetscViewer, PetscBool, DM *);
167d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateGmshFromFile(MPI_Comm, const char [], PetscBool, DM *);
168d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFluent(MPI_Comm, PetscViewer, PetscBool, DM *);
169d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFluentFromFile(MPI_Comm, const char [], PetscBool, DM *);
170d6218766SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateMedFromFile(MPI_Comm, const char [], PetscBool, DM *);
171f2801cd6SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreatePLYFromFile(MPI_Comm, const char [], PetscBool, DM *);
172d6218766SMatthew G. Knepley 
17375d3a19aSMatthew G. Knepley /* Mesh Partitioning and Distribution */
174552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateNeighborCSR(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **);
1755680f57bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetPartitioner(DM, PetscPartitioner *);
17671bb2955SLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexSetPartitioner(DM, PetscPartitioner);
177ac17c9edSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreatePartition(DM, const char[], PetscInt, PetscBool, PetscSection *, IS *, PetscSection *, IS *);
1783fa7752dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionerGraph(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **, IS *);
179552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionClosure(DM, PetscSection, IS, PetscSection *, IS *);
1801fd9873aSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelInvert(DM, DMLabel, PetscSF, DMLabel);
1815abbe4feSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelClosure(DM, DMLabel);
18224d039d7SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelAdjacency(DM, DMLabel);
183be200f8dSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelPropagate(DM, DMLabel);
184aa3148a8SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelCreateSF(DM, DMLabel, PetscSF *);
18598ba2d7fSLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexSetPartitionBalance(DM, PetscBool);
18698ba2d7fSLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexGetPartitionBalance(DM, PetscBool *);
18780cf41d5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistribute(DM, PetscInt, PetscSF*, DM*);
188b9f40539SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexDistributeOverlap(DM, PetscInt, PetscSF *, DM *);
189cb54e036SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexGetOverlap(DM, PetscInt *);
190552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexDistributeField(DM,PetscSF,PetscSection,Vec,PetscSection,Vec);
191b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistributeFieldIS(DM, PetscSF, PetscSection, IS, PetscSection, IS *);
192552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexDistributeData(DM,PetscSF,PetscSection,MPI_Datatype,void*,PetscSection,void**);
1938b879b41SFlorian Wechsung PETSC_EXTERN PetscErrorCode DMPlexRebalanceSharedPoints(DM, PetscInt, PetscBool, PetscBool, PetscBool*);
19445800214SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexMigrate(DM, PetscSF, DM);
195a13df41bSStefano Zampini PETSC_EXTERN PetscErrorCode DMPlexGetGatherDM(DM, PetscSF*, DM*);
196a13df41bSStefano Zampini PETSC_EXTERN PetscErrorCode DMPlexGetRedundantDM(DM, PetscSF*, DM*);
1973c1f0c11SLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUser(DM, PetscErrorCode (*)(DM,PetscInt,PetscInt*,PetscInt[],void*),void*);
1983c1f0c11SLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUser(DM, PetscErrorCode (**)(DM,PetscInt,PetscInt*,PetscInt[],void*),void**);
19970034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseCone(DM,PetscBool);
20070034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseCone(DM,PetscBool*);
20170034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseClosure(DM,PetscBool);
20270034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseClosure(DM,PetscBool*);
203a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM,PetscBool);
204a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM,PetscBool*);
20570034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetAdjacency(DM, PetscInt, PetscInt *, PetscInt *[]);
206f94b4a02SBlaise Bourdin PETSC_EXTERN PetscErrorCode DMPlexSetMigrationSF(DM, PetscSF);
207f94b4a02SBlaise Bourdin PETSC_EXTERN PetscErrorCode DMPlexGetMigrationSF(DM, PetscSF *);
20875d3a19aSMatthew G. Knepley 
209c99f2573SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetOrdering(DM, MatOrderingType, DMLabel, IS *);
210f5cedc29SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPermute(DM, IS, DM *);
211f5cedc29SMatthew G. Knepley 
212b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateProcessSF(DM, PetscSF, IS *, PetscSF *);
213b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM, PetscSF, PetscSection, IS, PetscSection, IS, IS *, PetscSF *);
214b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistributeOwnership(DM, PetscSection, IS *, PetscSection, IS *);
215dccdeccaSVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapLabel(DM, PetscInt, PetscSection, IS, PetscSection, IS, DMLabel *);
21646f9b1c3SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapMigrationSF(DM, PetscSF, PetscSF *);
21745800214SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexStratifyMigrationSF(DM, PetscSF, PetscSF *);
218b0a623aaSMatthew G. Knepley 
21975d3a19aSMatthew G. Knepley /* Submesh Support */
220158acfadSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSubmesh(DM, DMLabel, PetscInt, PetscBool, DM*);
2217db7e0a7SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateHybridMesh(DM, DMLabel, DMLabel, DMLabel *, DMLabel *, DM *, DM *);
222552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSubpointMap(DM, DMLabel*);
223552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSubpointMap(DM, DMLabel);
224552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateSubpointIS(DM, IS *);
225559a1558SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetSubpoint(DM, PetscInt, PetscInt *);
22644171101SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetAuxiliaryPoint(DM, DM, PetscInt, PetscInt *);
227552f7358SJed Brown 
2282be2b188SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelComplete(DM, DMLabel);
2290f66a230SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelCohesiveComplete(DM, DMLabel, DMLabel, PetscBool, DM);
2306cf0e42fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelAddCells(DM, DMLabel);
231f402d5e4SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexLabelClearCells(DM, DMLabel);
232552f7358SJed Brown 
23375d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRefinementLimit(DM, PetscReal *);
23475d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRefinementLimit(DM, PetscReal);
23575d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRefinementUniform(DM, PetscBool *);
23675d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRefinementUniform(DM, PetscBool);
2371e4cba6aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRefinementFunction(DM, PetscErrorCode (**)(const PetscReal [], PetscReal *));
2381e4cba6aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRefinementFunction(DM, PetscErrorCode (*)(const PetscReal [], PetscReal *));
2392389894bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCoarsePointIS(DM, IS *);
2400aef6b92SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRegularRefinement(DM, PetscBool *);
2410aef6b92SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRegularRefinement(DM, PetscBool);
242e5337592SStefano Zampini PETSC_EXTERN PetscErrorCode DMPlexRefineSimplexToTensor(DM, DM*);
243552f7358SJed Brown 
24418ad9376SMatthew G. Knepley /* Support for cell-vertex meshes */
24518ad9376SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetNumFaceVertices(DM, PetscInt, PetscInt, PetscInt *);
246f5d69827SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetOrientedFace(DM, PetscInt, PetscInt, const PetscInt [], PetscInt, PetscInt [], PetscInt [], PetscInt [], PetscBool *);
24718ad9376SMatthew G. Knepley 
2480f0bf202SMatthew G. Knepley /* Geometry Support */
2490f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetMinRadius(DM, PetscReal *);
2500f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetMinRadius(DM, PetscReal);
251741bfc07SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeProjection2Dto1D(PetscScalar[], PetscReal[]);
252741bfc07SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto1D(PetscScalar[], PetscReal[]);
253741bfc07SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto2D(PetscInt, PetscScalar[], PetscReal[]);
2540f0bf202SMatthew G. Knepley 
255c4eade1cSMatthew G. Knepley /* Point Location */
256c4eade1cSMatthew G. Knepley typedef struct _PetscGridHash *PetscGridHash;
257c4eade1cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGridHashCreate(MPI_Comm, PetscInt, const PetscScalar[], PetscGridHash *);
258c4eade1cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGridHashEnlarge(PetscGridHash, const PetscScalar []);
259c4eade1cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGridHashSetGrid(PetscGridHash, const PetscInt [], const PetscReal []);
2601c6dfc3eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGridHashGetEnclosingBox(PetscGridHash, PetscInt, const PetscScalar [], PetscInt [], PetscInt []);
261c4eade1cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscGridHashDestroy(PetscGridHash *);
2623985bb02SVaclav Hapla PETSC_EXTERN PetscErrorCode DMPlexFindVertices(DM, PetscInt, const PetscReal [], PetscReal, PetscInt []);
263c4eade1cSMatthew G. Knepley 
264834e62ceSMatthew G. Knepley /* FVM Support */
265cc08537eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFVM(DM, PetscInt, PetscReal *, PetscReal [], PetscReal []);
2660f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFVM(DM, Vec *, Vec *);
267856ac710SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGradientFVM(DM, PetscFV, Vec, Vec, DM *);
268b27d5b9eSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetDataFVM(DM, PetscFV, Vec *, Vec *, DM *);
269834e62ceSMatthew G. Knepley 
270552f7358SJed Brown /* FEM Support */
271cf0b7c11SKarl Rupp PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFEM(DM, Vec *);
272bdd6f66aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValues(DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec);
2731c531cf8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM, PetscReal, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt[],
274b278463cSMatthew G. Knepley                                                                 PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *, Vec );
2751c531cf8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM, PetscReal, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [],
276b278463cSMatthew G. Knepley                                                                      void (*)(PetscInt, PetscInt, PetscInt,
277b278463cSMatthew G. Knepley                                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
278b278463cSMatthew G. Knepley                                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
279191494d9SMatthew G. Knepley                                                                               PetscReal, const PetscReal[], PetscInt, const PetscScalar[],
280b278463cSMatthew G. Knepley                                                                               PetscScalar[]),
281b278463cSMatthew G. Knepley                                                                      void *, Vec);
2821c531cf8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM, PetscReal, Vec, Vec, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [],
283b278463cSMatthew G. Knepley                                                               PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *, Vec);
284e752be1aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMarkBoundaryFaces(DM, PetscInt, DMLabel);
285d7ddef95SMatthew G. Knepley 
286baef929fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSection(DM, DMLabel [], const PetscInt [], const PetscInt [], PetscInt, const PetscInt [], const IS [], const IS [], IS, PetscSection *);
287be36d101SStefano Zampini PETSC_EXTERN PetscErrorCode DMPlexGetSubdomainSection(DM, PetscSection*);
28875d3a19aSMatthew G. Knepley 
2898e0841e0SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryAffineFEM(DM, PetscInt, PetscReal *, PetscReal *, PetscReal *, PetscReal *);
290dfccc68fSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFEM(DM, PetscInt, PetscQuadrature, PetscReal *, PetscReal *, PetscReal *, PetscReal *);
291d6143a4eSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCoordinatesToReference(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]);
2929d150b73SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexReferenceToCoordinates(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]);
293d6143a4eSToby Isaac 
2947c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexVecGetClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]);
2957c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexVecRestoreClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]);
296552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexVecSetClosure(DM, PetscSection, Vec, PetscInt, const PetscScalar[], InsertMode);
2977c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexMatSetClosure(DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
2986ecaa68aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscInt *, PetscInt **, PetscInt *);
29946bdb399SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexRestoreClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscInt *, PetscInt **,PetscInt *);
3000405ed22SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
3017c927364SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, PetscInt, PetscInt[], PetscInt[]);
302ee72d991SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateClosureIndex(DM, PetscSection);
303bc1eb3faSJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetClosurePermutationTensor(DM, PetscInt, PetscSection);
304552f7358SJed Brown 
305552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexConstructGhostCells(DM, const char [], PetscInt *, DM *);
3067db7e0a7SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexConstructCohesiveCells(DM, DMLabel, DMLabel, DM *);
307552f7358SJed Brown 
308770b213bSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexGetHybridBounds(DM, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
309770b213bSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexSetHybridBounds(DM, PetscInt, PetscInt, PetscInt, PetscInt);
310552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetVTKCellHeight(DM, PetscInt *);
311552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetVTKCellHeight(DM, PetscInt);
312552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexVTKWriteAll(PetscObject, PetscViewer);
313552f7358SJed Brown 
3142f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetCellFields(DM, IS, Vec, Vec, Vec, PetscScalar **, PetscScalar **, PetscScalar **);
3152f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexRestoreCellFields(DM, IS, Vec, Vec, Vec, PetscScalar **, PetscScalar **, PetscScalar **);
3162f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetFaceFields(DM, PetscInt, PetscInt, Vec, Vec, Vec, Vec, Vec, PetscInt *, PetscScalar **, PetscScalar **);
3172f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexRestoreFaceFields(DM, PetscInt, PetscInt, Vec, Vec, Vec, Vec, Vec, PetscInt *, PetscScalar **, PetscScalar **);
3182f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetFaceGeometry(DM, PetscInt, PetscInt, Vec, Vec, PetscInt *, PetscFVFaceGeom **, PetscReal **);
3192f856554SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexRestoreFaceGeometry(DM, PetscInt, PetscInt, Vec, Vec, PetscInt *, PetscFVFaceGeom **, PetscReal **);
3202f856554SMatthew G. Knepley 
321552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetScale(DM, PetscUnit, PetscReal *);
322552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetScale(DM, PetscUnit, PetscReal);
323552f7358SJed Brown 
324552f7358SJed Brown typedef struct {
325552f7358SJed Brown   DM    dm;
32628d58a37SPierre Jolivet   Vec   u; /* The base vector for the Jacobian action J(u) x */
327552f7358SJed Brown   Mat   J; /* Preconditioner for testing */
328552f7358SJed Brown   void *user;
329552f7358SJed Brown } JacActionCtx;
330552f7358SJed Brown 
3313351dd3dSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesFEM(DM, Vec);
332b29cfa1cSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetMaxProjectionHeight(DM, PetscInt);
333b29cfa1cSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetMaxProjectionHeight(DM, PetscInt*);
334e29c0834SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexProjectFieldLocal(DM, Vec,
335e29c0834SMatthew G. Knepley                                                     void (**)(PetscInt, PetscInt, PetscInt,
336e29c0834SMatthew G. Knepley                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
337e29c0834SMatthew G. Knepley                                                               const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
338e29c0834SMatthew G. Knepley                                                               PetscReal, const PetscReal [], PetscScalar []), InsertMode, Vec);
339574a98acSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffLocal(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal *);
3400163fd50SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2FieldDiff(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal[]);
3410163fd50SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffVec(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, Vec);
342338f77d5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM, Vec, Vec, void *);
343b8feb594SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeIntegralFEM(DM, Vec, PetscScalar *, void *);
3449b6f715bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeBdIntegral(DM, Vec, DMLabel, PetscInt, const PetscInt[],
3459b6f715bSMatthew G. Knepley                                                     void (*)(PetscInt, PetscInt, PetscInt,
3469b6f715bSMatthew G. Knepley                                                              const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
3479b6f715bSMatthew G. Knepley                                                              const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[],
3489b6f715bSMatthew G. Knepley                                                              PetscReal, const PetscReal[], const PetscReal[], PetscInt, const PetscScalar[], PetscScalar[]),
3499b6f715bSMatthew G. Knepley                                                     PetscScalar *, void *);
35068132eb9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorNested(DM, DM, Mat, void *);
35168132eb9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorGeneral(DM, DM, Mat, void *);
3521555c271SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGradientClementInterpolant(DM, Vec, Vec);
3537c927364SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorFEM(DM, DM, VecScatter *, void *);
3542cb13a97SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixNested(DM, DM, Mat, void *);
3552cb13a97SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixGeneral(DM, DM, Mat, void *);
3561c41a8caSMatthew G. Knepley 
357026175e5SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBody(DM, MatNullSpace *);
358fd86e548SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBodies(DM, PetscInt, DMLabel, const PetscInt[], const PetscInt[], MatNullSpace *);
359026175e5SToby Isaac 
3609f520fc2SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetSNESLocalFEM(DM,void *,void *,void *);
361bdd6f66aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSNESComputeBoundaryFEM(DM, Vec, void *);
3620f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSNESComputeResidualFEM(DM, Vec, Vec, void *);
3630f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianFEM(DM, Vec, Mat, Mat, void *);
3647a73cf09SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeJacobianAction(DM, IS, PetscReal, PetscReal, Vec, Vec, Vec, Vec, void *);
365e3a53471SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeBdResidualSingle(DM, PetscReal, DMLabel, PetscInt, const PetscInt[], PetscInt, Vec, Vec, Vec);
3661624f205SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeBdJacobianSingle(DM, PetscReal, DMLabel, PetscInt, const PetscInt[], PetscInt, Vec, Vec, PetscReal, Mat, Mat);
3670f2d7e86SMatthew G. Knepley 
368ef68eab9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeBoundary(DM, PetscReal, Vec, Vec, void *);
369924a1b8fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *);
370adbe6fbbSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeIFunctionFEM(DM, PetscReal, Vec, Vec, Vec, void *);
371756a1f44SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeIJacobianFEM(DM, PetscReal, Vec, Vec, PetscReal, Mat, Mat, void *);
372adbe6fbbSMatthew G. Knepley 
3731c41a8caSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *);
3745d16530eSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexReconstructGradientsFVM(DM,Vec,Vec);
375a68b90caSToby Isaac 
376a17985deSToby Isaac /* anchors */
377a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetAnchors(DM, PetscSection*, IS*);
378a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetAnchors(DM, PetscSection, IS);
379d6a7ad0dSToby Isaac /* tree */
380d6a7ad0dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetReferenceTree(DM, DM);
381d6a7ad0dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetReferenceTree(DM, DM*);
382dcbd3bf7SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexReferenceTreeGetChildSymmetry(DM, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *);
383da43764aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCreateDefaultReferenceTree(MPI_Comm, PetscInt, PetscBool, DM*);
384b2f41788SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetTree(DM, PetscSection, PetscInt [], PetscInt []);
385b2f41788SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTree(DM, PetscSection *, PetscInt *[], PetscInt *[], PetscSection *, PetscInt *[]);
386d961a43aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTreeParent(DM, PetscInt, PetscInt *, PetscInt *);
387d961a43aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTreeChildren(DM, PetscInt, PetscInt *, const PetscInt *[]);
3886f5f1567SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexTreeRefineCell(DM, PetscInt, DM *);
3893b490a17SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorReferenceTree(DM, Mat *);
390bbcf1e96SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexTransferVecTree(DM,Vec,DM,Vec,PetscSF,PetscSF,PetscInt *,PetscInt *,PetscBool,PetscReal);
391fa534816SMatthew G. Knepley 
392fa534816SMatthew G. Knepley /* natural order */
393fa534816SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateGlobalToNaturalSF(DM, PetscSection, PetscSF, PetscSF *);
394f94b4a02SBlaise Bourdin PETSC_EXTERN PetscErrorCode DMPlexSetGlobalToNaturalSF(DM, PetscSF);
395f94b4a02SBlaise Bourdin PETSC_EXTERN PetscErrorCode DMPlexGetGlobalToNaturalSF(DM, PetscSF *);
396fa534816SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalBegin(DM, Vec, Vec);
397fa534816SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalEnd(DM, Vec, Vec);
398fa534816SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalBegin(DM, Vec, Vec);
399fa534816SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalEnd(DM, Vec, Vec);
4000bbe5d31Sbarral 
4010bbe5d31Sbarral /* mesh adaptation */
4020f7e110dSbarral PETSC_EXTERN PetscErrorCode DMPlexAdapt(DM, Vec, const char [], DM *);
403ca3d3a14SMatthew G. Knepley 
404ca3d3a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGlobalToLocalBasis(DM, Vec);
405ca3d3a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLocalToGlobalBasis(DM, Vec);
406ca3d3a14SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateBasisRotation(DM, PetscReal, PetscReal, PetscReal);
407552f7358SJed Brown #endif
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