xref: /petsc/include/petscdmplex.h (revision 2f0bd6dcb9a57d90d41f28dab0c7c03dccc1eb08) 
1552f7358SJed Brown /*
2552f7358SJed Brown   DMPlex, for parallel unstructured distributed mesh problems.
3552f7358SJed Brown */
4552f7358SJed Brown #if !defined(__PETSCDMPLEX_H)
5552f7358SJed Brown #define __PETSCDMPLEX_H
6552f7358SJed Brown 
7552f7358SJed Brown #include <petscdm.h>
8a0845e3aSMatthew G. Knepley #include <petscdt.h>
9a0845e3aSMatthew G. Knepley #include <petscfe.h>
100bacfa0aSMatthew G. Knepley #include <petscfv.h>
11799f573fSMatthew G. Knepley #include <petscsftypes.h>
12552f7358SJed Brown 
1377623264SMatthew G. Knepley PETSC_EXTERN PetscClassId PETSCPARTITIONER_CLASSID;
1477623264SMatthew G. Knepley 
1577623264SMatthew G. Knepley /*J
1677623264SMatthew G. Knepley   PetscPartitionerType - String with the name of a PETSc graph partitioner
1777623264SMatthew G. Knepley 
1877623264SMatthew G. Knepley   Level: beginner
1977623264SMatthew G. Knepley 
2077623264SMatthew G. Knepley .seealso: PetscPartitionerSetType(), PetscPartitioner
2177623264SMatthew G. Knepley J*/
2277623264SMatthew G. Knepley typedef const char *PetscPartitionerType;
2377623264SMatthew G. Knepley #define PETSCPARTITIONERCHACO    "chaco"
2477623264SMatthew G. Knepley #define PETSCPARTITIONERPARMETIS "parmetis"
2577623264SMatthew G. Knepley #define PETSCPARTITIONERSHELL    "shell"
26555a9cf8SMatthew G. Knepley #define PETSCPARTITIONERSIMPLE   "simple"
2777623264SMatthew G. Knepley 
2877623264SMatthew G. Knepley PETSC_EXTERN PetscFunctionList PetscPartitionerList;
2977623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerCreate(MPI_Comm, PetscPartitioner *);
3077623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerDestroy(PetscPartitioner *);
3177623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerSetType(PetscPartitioner, PetscPartitionerType);
3277623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerGetType(PetscPartitioner, PetscPartitionerType *);
3377623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerSetUp(PetscPartitioner);
3477623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerSetFromOptions(PetscPartitioner);
3577623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerViewFromOptions(PetscPartitioner, const char[], const char[]);
3677623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerView(PetscPartitioner, PetscViewer);
3777623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerRegister(const char [], PetscErrorCode (*)(PetscPartitioner));
3877623264SMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerRegisterDestroy(void);
3977623264SMatthew G. Knepley 
40f8987ae8SMichael Lange PETSC_EXTERN PetscErrorCode PetscPartitionerPartition(PetscPartitioner, DM, PetscSection, IS *);
4177623264SMatthew G. Knepley 
425680f57bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode PetscPartitionerShellSetPartition(PetscPartitioner, PetscInt, const PetscInt[], const PetscInt[]);
4377623264SMatthew G. Knepley 
44552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreate(MPI_Comm, DM*);
4527c04023SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCohesiveSubmesh(DM, PetscBool, const char [], PetscInt, DM *);
460fde5641SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellList(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const double[], DM*);
4706bbee04SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFromDAG(DM, PetscInt, const PetscInt [], const PetscInt [], const PetscInt [], const PetscInt [], const PetscScalar []);
488415267dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceCell(MPI_Comm, PetscInt, PetscBool, DM*);
49552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetChart(DM, PetscInt *, PetscInt *);
50552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetChart(DM, PetscInt, PetscInt);
51552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeSize(DM, PetscInt, PetscInt *);
52552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetConeSize(DM, PetscInt, PetscInt);
53feb68dd6SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexAddConeSize(DM, PetscInt, PetscInt);
54552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]);
55552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetCone(DM, PetscInt, const PetscInt[]);
569f074e33SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertCone(DM, PetscInt, PetscInt, PetscInt);
5777c88f5bSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertConeOrientation(DM, PetscInt, PetscInt, PetscInt);
58552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]);
59552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetConeOrientation(DM, PetscInt, const PetscInt[]);
60552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSupportSize(DM, PetscInt, PetscInt *);
61552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSupportSize(DM, PetscInt, PetscInt);
62552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]);
63552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSupport(DM, PetscInt, const PetscInt[]);
64552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexInsertSupport(DM, PetscInt, PetscInt, PetscInt);
65552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeSection(DM, PetscSection *);
668cb4d582SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetSupportSection(DM, PetscSection *);
67552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCones(DM, PetscInt *[]);
68552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientations(DM, PetscInt *[]);
69552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetMaxSizes(DM, PetscInt *, PetscInt *);
70552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSymmetrize(DM);
71552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexStratify(DM);
724e3744c5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexEqual(DM,DM,PetscBool*);
73cb11e54dSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexReverseCell(DM, PetscInt);
74d27a0f52SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexOrient(DM);
7575d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInterpolate(DM, DM *);
764e3744c5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexUninterpolate(DM, DM *);
7775d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLoad(PetscViewer, DM);
78cb1e1211SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexPreallocateOperator(DM, PetscInt, PetscSection, PetscSection, PetscInt[], PetscInt[], PetscInt[], PetscInt[], Mat, PetscBool);
79552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetPointLocal(DM,PetscInt,PetscInt*,PetscInt*);
80552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexPointLocalRef(DM,PetscInt,PetscScalar*,void*);
814824f456SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*);
82552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexPointLocalRead(DM,PetscInt,const PetscScalar*,const void*);
831ce3176fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,const void*);
84552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobal(DM,PetscInt,PetscInt*,PetscInt*);
85552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRef(DM,PetscInt,PetscScalar*,void*);
8633879625SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*);
87552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRead(DM,PetscInt,const PetscScalar*,const void*);
8833879625SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,const void*);
89552f7358SJed Brown 
90552f7358SJed Brown /*S
91552f7358SJed Brown   DMLabel - Object which encapsulates a subset of the mesh from this DM
92552f7358SJed Brown 
93552f7358SJed Brown   Level: developer
94552f7358SJed Brown 
95552f7358SJed Brown   Concepts: grids, grid refinement
96552f7358SJed Brown 
97552f7358SJed Brown .seealso:  DM, DMPlexCreate(), DMPlexCreateLabel()
98552f7358SJed Brown S*/
99552f7358SJed Brown typedef struct _n_DMLabel *DMLabel;
100552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelCreate(const char [], DMLabel *);
101552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelView(DMLabel, PetscViewer);
102552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelDestroy(DMLabel *);
103f807ecf7SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMLabelDuplicate(DMLabel, DMLabel *);
10485de2ee3SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMLabelGetName(DMLabel, const char **);
105552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelGetValue(DMLabel, PetscInt, PetscInt *);
106552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelSetValue(DMLabel, PetscInt, PetscInt);
107552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelClearValue(DMLabel, PetscInt, PetscInt);
108552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelGetNumValues(DMLabel, PetscInt *);
109a9e27379SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMLabelGetStratumBounds(DMLabel, PetscInt, PetscInt *, PetscInt *);
110552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelGetValueIS(DMLabel, IS *);
1110225b034SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMLabelStratumHasPoint(DMLabel, PetscInt, PetscInt, PetscBool *);
112552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelGetStratumSize(DMLabel, PetscInt, PetscInt *);
113552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelGetStratumIS(DMLabel, PetscInt, IS *);
114552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMLabelClearStratum(DMLabel, PetscInt);
11591d07b70SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMLabelCreateIndex(DMLabel, PetscInt, PetscInt);
11691d07b70SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMLabelDestroyIndex(DMLabel);
11746b85170SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMLabelHasValue(DMLabel, PetscInt, PetscBool *);
11891d07b70SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMLabelHasPoint(DMLabel, PetscInt, PetscBool *);
119ae932cb5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMLabelFilter(DMLabel, PetscInt, PetscInt);
120f186335cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMLabelPermute(DMLabel, IS, DMLabel *);
1212eb1fa14SMichael Lange PETSC_EXTERN PetscErrorCode DMLabelDistribute(DMLabel, PetscSF, DMLabel *);
122552f7358SJed Brown 
123552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateLabel(DM, const char []);
124552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetLabelValue(DM, const char[], PetscInt, PetscInt *);
125552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetLabelValue(DM, const char[], PetscInt, PetscInt);
126552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexClearLabelValue(DM, const char[], PetscInt, PetscInt);
127552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetLabelSize(DM, const char[], PetscInt *);
128552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetLabelIdIS(DM, const char[], IS *);
129552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetStratumSize(DM, const char [], PetscInt, PetscInt *);
130552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetStratumIS(DM, const char [], PetscInt, IS *);
131552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexClearLabelStratum(DM, const char[], PetscInt);
132a85475f2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetLabelOutput(DM, const char[], PetscBool *);
133a85475f2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetLabelOutput(DM, const char[], PetscBool);
134552f7358SJed Brown PETSC_EXTERN PetscErrorCode PetscSectionCreateGlobalSectionLabel(PetscSection, PetscSF, PetscBool, DMLabel, PetscInt, PetscSection *);
135552f7358SJed Brown 
136552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetNumLabels(DM, PetscInt *);
137552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetLabelName(DM, PetscInt, const char **);
138552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexHasLabel(DM, const char [], PetscBool *);
139552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetLabel(DM, const char *, DMLabel *);
140a85475f2SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetLabelByNum(DM, PetscInt, DMLabel *);
141552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexAddLabel(DM, DMLabel);
142552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRemoveLabel(DM, const char [], DMLabel *);
143552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetCellNumbering(DM, IS *);
144552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetVertexNumbering(DM, IS *);
145ef48cebcSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreatePointNumbering(DM, IS *);
146552f7358SJed Brown 
14775d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepth(DM, PetscInt *);
1483ded2ed9SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepthLabel(DM, DMLabel *);
14975d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetDepthStratum(DM, PetscInt, PetscInt *, PetscInt *);
15075d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetHeightStratum(DM, PetscInt, PetscInt *, PetscInt *);
15175d3a19aSMatthew G. Knepley 
15275d3a19aSMatthew G. Knepley /* Topological Operations */
153552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
154552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetFullMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
155552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
156552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
157552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetFullJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
158552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **);
159552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]);
160552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexRestoreTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]);
161552f7358SJed Brown 
16275d3a19aSMatthew G. Knepley /* Mesh Generation */
163552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGenerate(DM, const char [], PetscBool , DM *);
164930319cbSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCopyCoordinates(DM, DM);
1655c386225SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCopyLabels(DM, DM);
1661df5d5c5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateDoublet(MPI_Comm, PetscInt, PetscBool, PetscBool, PetscBool, PetscReal, DM *);
16726492d91SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSquareBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []);
168552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateCubeBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []);
1691a77d578SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSquareMesh(DM, const PetscReal [], const PetscReal [], const PetscInt [], DMBoundaryType, DMBoundaryType);
170552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, DM *);
171bff4a2f0SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateHexBoxMesh(MPI_Comm, PetscInt, const PetscInt[], DMBoundaryType, DMBoundaryType, DMBoundaryType, DM *);
172552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateConeSection(DM, PetscSection *);
173459e96c1SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInvertCell(PetscInt, PetscInt, int []);
174d49fcaecSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLocalizeCoordinates(DM);
175ca8062c8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckSymmetry(DM);
17658723a97SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckSkeleton(DM, PetscBool, PetscInt);
1779bf0dad6SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCheckFaces(DM, PetscBool, PetscInt);
17875d3a19aSMatthew G. Knepley 
179d9deefdfSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTriangleSetOptions(DM, const char *);
180776fd405SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTetgenSetOptions(DM, const char *);
181d9deefdfSMatthew G. Knepley 
18275d3a19aSMatthew G. Knepley /* Mesh Partitioning and Distribution */
183552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateNeighborCSR(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **);
1845680f57bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetPartitioner(DM, PetscPartitioner *);
18571bb2955SLawrence Mitchell PETSC_EXTERN PetscErrorCode DMPlexSetPartitioner(DM, PetscPartitioner);
186ac17c9edSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreatePartition(DM, const char[], PetscInt, PetscBool, PetscSection *, IS *, PetscSection *, IS *);
18745800214SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionerGraph(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **);
188552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionClosure(DM, PetscSection, IS, PetscSection *, IS *);
1891fd9873aSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelInvert(DM, DMLabel, PetscSF, DMLabel);
1905abbe4feSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelClosure(DM, DMLabel);
19124d039d7SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelAdjacency(DM, DMLabel);
192aa3148a8SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelCreateSF(DM, DMLabel, PetscSF *);
19380cf41d5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistribute(DM, PetscInt, PetscSF*, DM*);
194b9f40539SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexDistributeOverlap(DM, PetscInt, PetscSF *, DM *);
195552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexDistributeField(DM,PetscSF,PetscSection,Vec,PetscSection,Vec);
196b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistributeFieldIS(DM, PetscSF, PetscSection, IS, PetscSection, IS *);
197552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexDistributeData(DM,PetscSF,PetscSection,MPI_Datatype,void*,PetscSection,void**);
19845800214SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexMigrate(DM, PetscSF, DM);
19970034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseCone(DM,PetscBool);
20070034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseCone(DM,PetscBool*);
20170034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseClosure(DM,PetscBool);
20270034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseClosure(DM,PetscBool*);
203a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM,PetscBool);
204a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM,PetscBool*);
20570034214SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetAdjacency(DM, PetscInt, PetscInt *, PetscInt *[]);
20675d3a19aSMatthew G. Knepley 
207f5cedc29SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetOrdering(DM, MatOrderingType, IS *);
208f5cedc29SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexPermute(DM, IS, DM *);
209f5cedc29SMatthew G. Knepley 
210b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateProcessSF(DM, PetscSF, IS *, PetscSF *);
211b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM, PetscSF, PetscSection, IS, PetscSection, IS, IS *, PetscSF *);
212b0a623aaSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexDistributeOwnership(DM, PetscSection, IS *, PetscSection, IS *);
213a9f1d5b2SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateOverlap(DM, PetscInt, PetscSection, IS, PetscSection, IS, DMLabel *);
21446f9b1c3SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapMigrationSF(DM, PetscSF, PetscSF *);
21545800214SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexStratifyMigrationSF(DM, PetscSF, PetscSF *);
216b0a623aaSMatthew G. Knepley 
21775d3a19aSMatthew G. Knepley /* Submesh Support */
2183cf72582SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSubmesh(DM, DMLabel, PetscInt, DM*);
2193cf72582SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateHybridMesh(DM, DMLabel, DMLabel *, DM *);
220552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetSubpointMap(DM, DMLabel*);
221552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetSubpointMap(DM, DMLabel);
222552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateSubpointIS(DM, IS *);
223552f7358SJed Brown 
22409f723d9SJed Brown PETSC_EXTERN PetscErrorCode DMPlexMarkBoundaryFaces(DM, DMLabel);
2252be2b188SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelComplete(DM, DMLabel);
2260f66a230SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelCohesiveComplete(DM, DMLabel, DMLabel, PetscBool, DM);
2276cf0e42fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexLabelAddCells(DM, DMLabel);
228552f7358SJed Brown 
22975d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRefinementLimit(DM, PetscReal *);
23075d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRefinementLimit(DM, PetscReal);
23175d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetRefinementUniform(DM, PetscBool *);
23275d3a19aSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetRefinementUniform(DM, PetscBool);
2333913d7c8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetCoarseDM(DM, DM *);
2343913d7c8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetCoarseDM(DM, DM);
2352389894bSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCoarsePointIS(DM, IS *);
236552f7358SJed Brown 
23718ad9376SMatthew G. Knepley /* Support for cell-vertex meshes */
23818ad9376SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetNumFaceVertices(DM, PetscInt, PetscInt, PetscInt *);
239f5d69827SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetOrientedFace(DM, PetscInt, PetscInt, const PetscInt [], PetscInt, PetscInt [], PetscInt [], PetscInt [], PetscBool *);
24018ad9376SMatthew G. Knepley 
2410f0bf202SMatthew G. Knepley /* Geometry Support */
2420f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetMinRadius(DM, PetscReal *);
2430f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSetMinRadius(DM, PetscReal);
2440f0bf202SMatthew G. Knepley 
245834e62ceSMatthew G. Knepley /* FVM Support */
246cc08537eSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFVM(DM, PetscInt, PetscReal *, PetscReal [], PetscReal []);
2470f0bf202SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFVM(DM, Vec *, Vec *);
248856ac710SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGradientFVM(DM, PetscFV, Vec, Vec, DM *);
249834e62ceSMatthew G. Knepley 
250552f7358SJed Brown /* FEM Support */
251d7ddef95SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValues(DM, Vec, PetscReal, Vec, Vec, Vec);
252d7ddef95SMatthew G. Knepley 
253f8f126e8SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateSection(DM, PetscInt, PetscInt,const PetscInt [],const PetscInt [], PetscInt,const PetscInt [],const IS [], IS, PetscSection *);
25475d3a19aSMatthew G. Knepley 
2558e0841e0SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryAffineFEM(DM, PetscInt, PetscReal *, PetscReal *, PetscReal *, PetscReal *);
2568e0841e0SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFEM(DM, PetscInt, PetscFE, PetscReal *, PetscReal *, PetscReal *, PetscReal *);
257c0d900a5SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFEM(DM, Vec *);
2587c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexVecGetClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]);
2597c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexVecRestoreClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]);
260552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexVecSetClosure(DM, PetscSection, Vec, PetscInt, const PetscScalar[], InsertMode);
2617c1f9639SMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexMatSetClosure(DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
2620405ed22SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode);
2637c927364SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, PetscInt, PetscInt[], PetscInt[]);
264ee72d991SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateClosureIndex(DM, PetscSection);
265552f7358SJed Brown 
266ca522641SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateFromFile(MPI_Comm, const char[], PetscBool, DM *);
267552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexCreateExodus(MPI_Comm, PetscInt, PetscBool, DM *);
26833751fbdSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateExodusFromFile(MPI_Comm, const char [], PetscBool, DM *);
2695bb3eff3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateCGNS(MPI_Comm, PetscInt, PetscBool, DM *);
27044cd5272SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateCGNSFromFile(MPI_Comm, const char[], PetscBool, DM *);
271331830f3SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCreateGmsh(MPI_Comm, PetscViewer, PetscBool, DM *);
2727d282ae0SMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateGmshFromFile(MPI_Comm, const char [], PetscBool, DM *);
273*2f0bd6dcSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateFluent(MPI_Comm, PetscViewer, PetscBool, DM *);
274*2f0bd6dcSMichael Lange PETSC_EXTERN PetscErrorCode DMPlexCreateFluentFromFile(MPI_Comm, const char [], PetscBool, DM *);
275552f7358SJed Brown 
276552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexConstructGhostCells(DM, const char [], PetscInt *, DM *);
277a89082eeSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexConstructCohesiveCells(DM, DMLabel, DM *);
278552f7358SJed Brown 
279770b213bSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexGetHybridBounds(DM, PetscInt *, PetscInt *, PetscInt *, PetscInt *);
280770b213bSMatthew G Knepley PETSC_EXTERN PetscErrorCode DMPlexSetHybridBounds(DM, PetscInt, PetscInt, PetscInt, PetscInt);
281552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetVTKCellHeight(DM, PetscInt *);
282552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetVTKCellHeight(DM, PetscInt);
283552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexVTKWriteAll(PetscObject, PetscViewer);
284552f7358SJed Brown 
285552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexGetScale(DM, PetscUnit, PetscReal *);
286552f7358SJed Brown PETSC_EXTERN PetscErrorCode DMPlexSetScale(DM, PetscUnit, PetscReal);
287552f7358SJed Brown 
2886c73c22cSMatthew G. Knepley typedef struct _n_Boundary *DMBoundary;
28963d5297fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexAddBoundary(DM, PetscBool, const char[], const char[], PetscInt, void (*)(), PetscInt, const PetscInt *, void *);
2906c73c22cSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetNumBoundary(DM, PetscInt *);
29163d5297fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexGetBoundary(DM, PetscInt, PetscBool *, const char **, const char **, PetscInt *, void (**)(), PetscInt *, const PetscInt **, void **);
2920225b034SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexIsBoundaryPoint(DM, PetscInt, PetscBool *);
2938e136ac0SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexCopyBoundary(DM, DM);
2946c73c22cSMatthew G. Knepley 
295552f7358SJed Brown typedef struct {
296552f7358SJed Brown   DM    dm;
297552f7358SJed Brown   Vec   u; /* The base vector for the Jacbobian action J(u) x */
298552f7358SJed Brown   Mat   J; /* Preconditioner for testing */
299552f7358SJed Brown   void *user;
300552f7358SJed Brown } JacActionCtx;
301552f7358SJed Brown 
3023351dd3dSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesFEM(DM, Vec);
303b29cfa1cSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetMaxProjectionHeight(DM, PetscInt);
304b29cfa1cSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetMaxProjectionHeight(DM, PetscInt*);
3058040c1f3SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexProjectFunction(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, InsertMode, Vec);
3060f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexProjectFunctionLocal(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, InsertMode, Vec);
3071ee2f23fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexProjectFieldLocal(DM, Vec, void (**)(const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscScalar[], const PetscReal [], PetscScalar []), InsertMode, Vec);
3080f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2Diff(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, Vec, PetscReal *);
3090f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2GradientDiff(DM, void (**)(const PetscReal [], const PetscReal [], PetscScalar *, void *), void **, Vec, const PetscReal [], PetscReal *);
3100f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeL2FieldDiff(DM, void (**)(const PetscReal [], PetscScalar *, void *), void **, Vec, PetscReal[]);
3110f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeIntegralFEM(DM, Vec, PetscReal *, void *);
312bceba477SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorFEM(DM, DM, Mat, void *);
3137c927364SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorFEM(DM, DM, VecScatter *, void *);
3141c41a8caSMatthew G. Knepley 
3150f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSNESComputeResidualFEM(DM, Vec, Vec, void *);
3160f2d7e86SMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianFEM(DM, Vec, Mat, Mat,void *);
3170f2d7e86SMatthew G. Knepley 
318924a1b8fSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *);
319adbe6fbbSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexTSComputeIFunctionFEM(DM, PetscReal, Vec, Vec, Vec, void *);
320adbe6fbbSMatthew G. Knepley 
3211c41a8caSMatthew G. Knepley PETSC_EXTERN PetscErrorCode DMPlexComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *);
322a68b90caSToby Isaac 
323a17985deSToby Isaac /* anchors */
324a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetAnchors(DM, PetscSection*, IS*);
325a17985deSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetAnchors(DM, PetscSection, IS);
326d6a7ad0dSToby Isaac /* tree */
327d6a7ad0dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetReferenceTree(DM, DM);
328d6a7ad0dSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetReferenceTree(DM, DM*);
329dcbd3bf7SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexReferenceTreeGetChildSymmetry(DM, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *);
330da43764aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexCreateDefaultReferenceTree(MPI_Comm, PetscInt, PetscBool, DM*);
331b2f41788SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexSetTree(DM, PetscSection, PetscInt [], PetscInt []);
332b2f41788SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTree(DM, PetscSection *, PetscInt *[], PetscInt *[], PetscSection *, PetscInt *[]);
333d961a43aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTreeParent(DM, PetscInt, PetscInt *, PetscInt *);
334d961a43aSToby Isaac PETSC_EXTERN PetscErrorCode DMPlexGetTreeChildren(DM, PetscInt, PetscInt *, const PetscInt *[]);
3356f5f1567SToby Isaac PETSC_EXTERN PetscErrorCode DMPlexTreeRefineCell(DM, PetscInt, DM *);
336552f7358SJed Brown #endif
337