1 /* 2 DMPlex, for parallel unstructured distributed mesh problems. 3 */ 4 #if !defined(__PETSCDMPLEX_H) 5 #define __PETSCDMPLEX_H 6 7 #include <petscdm.h> 8 #include <petscdt.h> 9 #include <petscfe.h> 10 #include <petscfv.h> 11 #include <petscsftypes.h> 12 #include <petscdmfield.h> 13 14 PETSC_EXTERN PetscClassId PETSCPARTITIONER_CLASSID; 15 16 /*J 17 PetscPartitionerType - String with the name of a PETSc graph partitioner 18 19 Level: beginner 20 21 .seealso: PetscPartitionerSetType(), PetscPartitioner 22 J*/ 23 typedef const char *PetscPartitionerType; 24 #define PETSCPARTITIONERCHACO "chaco" 25 #define PETSCPARTITIONERPARMETIS "parmetis" 26 #define PETSCPARTITIONERPTSCOTCH "ptscotch" 27 #define PETSCPARTITIONERSHELL "shell" 28 #define PETSCPARTITIONERSIMPLE "simple" 29 #define PETSCPARTITIONERGATHER "gather" 30 #define PETSCPARTITIONERMATPARTITIONING "matpartitioning" 31 32 PETSC_EXTERN PetscFunctionList PetscPartitionerList; 33 PETSC_EXTERN PetscErrorCode PetscPartitionerCreate(MPI_Comm, PetscPartitioner *); 34 PETSC_EXTERN PetscErrorCode PetscPartitionerDestroy(PetscPartitioner *); 35 PETSC_EXTERN PetscErrorCode PetscPartitionerSetType(PetscPartitioner, PetscPartitionerType); 36 PETSC_EXTERN PetscErrorCode PetscPartitionerGetType(PetscPartitioner, PetscPartitionerType *); 37 PETSC_EXTERN PetscErrorCode PetscPartitionerSetUp(PetscPartitioner); 38 PETSC_EXTERN PetscErrorCode PetscPartitionerSetFromOptions(PetscPartitioner); 39 PETSC_STATIC_INLINE PetscErrorCode PetscPartitionerViewFromOptions(PetscPartitioner A,PetscObject B,const char name[]) {return PetscObjectViewFromOptions((PetscObject)A,B,name);} 40 PETSC_EXTERN PetscErrorCode PetscPartitionerView(PetscPartitioner, PetscViewer); 41 PETSC_EXTERN PetscErrorCode PetscPartitionerRegister(const char [], PetscErrorCode (*)(PetscPartitioner)); 42 PETSC_EXTERN PetscErrorCode PetscPartitionerRegisterDestroy(void); 43 44 PETSC_EXTERN PetscErrorCode PetscPartitionerPartition(PetscPartitioner, DM, PetscSection, IS *); 45 46 PETSC_EXTERN PetscErrorCode PetscPartitionerShellSetPartition(PetscPartitioner, PetscInt, const PetscInt[], const PetscInt[]); 47 PETSC_EXTERN PetscErrorCode PetscPartitionerShellSetRandom(PetscPartitioner, PetscBool); 48 PETSC_EXTERN PetscErrorCode PetscPartitionerShellGetRandom(PetscPartitioner, PetscBool *); 49 50 PETSC_EXTERN PetscErrorCode PetscPartitionerMatPartitioningGetMatPartitioning(PetscPartitioner part, MatPartitioning *mp); 51 52 PETSC_EXTERN PetscErrorCode DMPlexCreate(MPI_Comm, DM*); 53 PETSC_EXTERN PetscErrorCode DMPlexCreateCohesiveSubmesh(DM, PetscBool, const char [], PetscInt, DM *); 54 PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellList(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const double[], DM*); 55 PETSC_EXTERN PetscErrorCode DMPlexCreateFromCellListParallel(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const PetscReal[], PetscSF *, DM *); 56 PETSC_EXTERN PetscErrorCode DMPlexCreateFromDAG(DM, PetscInt, const PetscInt [], const PetscInt [], const PetscInt [], const PetscInt [], const PetscScalar []); 57 PETSC_EXTERN PetscErrorCode DMPlexCreateReferenceCell(MPI_Comm, PetscInt, PetscBool, DM*); 58 PETSC_EXTERN PetscErrorCode DMPlexSetOptionsPrefix(DM, const char []); 59 PETSC_EXTERN PetscErrorCode DMPlexGetChart(DM, PetscInt *, PetscInt *); 60 PETSC_EXTERN PetscErrorCode DMPlexSetChart(DM, PetscInt, PetscInt); 61 PETSC_EXTERN PetscErrorCode DMPlexGetConeSize(DM, PetscInt, PetscInt *); 62 PETSC_EXTERN PetscErrorCode DMPlexSetConeSize(DM, PetscInt, PetscInt); 63 PETSC_EXTERN PetscErrorCode DMPlexAddConeSize(DM, PetscInt, PetscInt); 64 PETSC_EXTERN PetscErrorCode DMPlexGetCone(DM, PetscInt, const PetscInt *[]); 65 PETSC_EXTERN PetscErrorCode DMPlexSetCone(DM, PetscInt, const PetscInt[]); 66 PETSC_EXTERN PetscErrorCode DMPlexInsertCone(DM, PetscInt, PetscInt, PetscInt); 67 PETSC_EXTERN PetscErrorCode DMPlexInsertConeOrientation(DM, PetscInt, PetscInt, PetscInt); 68 PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientation(DM, PetscInt, const PetscInt *[]); 69 PETSC_EXTERN PetscErrorCode DMPlexSetConeOrientation(DM, PetscInt, const PetscInt[]); 70 PETSC_EXTERN PetscErrorCode DMPlexGetSupportSize(DM, PetscInt, PetscInt *); 71 PETSC_EXTERN PetscErrorCode DMPlexSetSupportSize(DM, PetscInt, PetscInt); 72 PETSC_EXTERN PetscErrorCode DMPlexGetSupport(DM, PetscInt, const PetscInt *[]); 73 PETSC_EXTERN PetscErrorCode DMPlexSetSupport(DM, PetscInt, const PetscInt[]); 74 PETSC_EXTERN PetscErrorCode DMPlexInsertSupport(DM, PetscInt, PetscInt, PetscInt); 75 PETSC_EXTERN PetscErrorCode DMPlexGetConeSection(DM, PetscSection *); 76 PETSC_EXTERN PetscErrorCode DMPlexGetSupportSection(DM, PetscSection *); 77 PETSC_EXTERN PetscErrorCode DMPlexGetCones(DM, PetscInt *[]); 78 PETSC_EXTERN PetscErrorCode DMPlexGetConeOrientations(DM, PetscInt *[]); 79 PETSC_EXTERN PetscErrorCode DMPlexGetMaxSizes(DM, PetscInt *, PetscInt *); 80 PETSC_EXTERN PetscErrorCode DMPlexSymmetrize(DM); 81 PETSC_EXTERN PetscErrorCode DMPlexStratify(DM); 82 PETSC_EXTERN PetscErrorCode DMPlexEqual(DM,DM,PetscBool*); 83 PETSC_EXTERN PetscErrorCode DMPlexReverseCell(DM, PetscInt); 84 PETSC_EXTERN PetscErrorCode DMPlexOrient(DM); 85 PETSC_EXTERN PetscErrorCode DMPlexInterpolate(DM, DM *); 86 PETSC_EXTERN PetscErrorCode DMPlexUninterpolate(DM, DM *); 87 PETSC_EXTERN PetscErrorCode DMPlexPreallocateOperator(DM, PetscInt, PetscInt[], PetscInt[], PetscInt[], PetscInt[], Mat, PetscBool); 88 PETSC_EXTERN PetscErrorCode DMPlexGetPointLocal(DM,PetscInt,PetscInt*,PetscInt*); 89 PETSC_EXTERN PetscErrorCode DMPlexPointLocalRead(DM,PetscInt,const PetscScalar*,void*); 90 PETSC_EXTERN PetscErrorCode DMPlexPointLocalRef(DM,PetscInt,PetscScalar*,void*); 91 PETSC_EXTERN PetscErrorCode DMPlexGetPointLocalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*); 92 PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*); 93 PETSC_EXTERN PetscErrorCode DMPlexPointLocalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*,void*); 94 PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobal(DM,PetscInt,PetscInt*,PetscInt*); 95 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRead(DM,PetscInt,const PetscScalar*,const void*); 96 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalRef(DM,PetscInt,PetscScalar*,void*); 97 PETSC_EXTERN PetscErrorCode DMPlexGetPointGlobalField(DM,PetscInt,PetscInt,PetscInt*,PetscInt*); 98 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRef(DM,PetscInt,PetscInt,PetscScalar*,void*); 99 PETSC_EXTERN PetscErrorCode DMPlexPointGlobalFieldRead(DM,PetscInt,PetscInt,const PetscScalar*, void*); 100 101 PETSC_EXTERN PetscErrorCode DMPlexFilter(DM, DMLabel, PetscInt, DM *); 102 PETSC_EXTERN PetscErrorCode DMPlexGetCellNumbering(DM, IS *); 103 PETSC_EXTERN PetscErrorCode DMPlexGetVertexNumbering(DM, IS *); 104 PETSC_EXTERN PetscErrorCode DMPlexCreatePointNumbering(DM, IS *); 105 PETSC_EXTERN PetscErrorCode DMPlexCreateRankField(DM, Vec *); 106 107 PETSC_EXTERN PetscErrorCode DMPlexGetDepth(DM, PetscInt *); 108 PETSC_EXTERN PetscErrorCode DMPlexGetDepthLabel(DM, DMLabel *); 109 PETSC_EXTERN PetscErrorCode DMPlexGetDepthStratum(DM, PetscInt, PetscInt *, PetscInt *); 110 PETSC_EXTERN PetscErrorCode DMPlexGetHeightStratum(DM, PetscInt, PetscInt *, PetscInt *); 111 112 /* Topological Operations */ 113 PETSC_EXTERN PetscErrorCode DMPlexGetMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 114 PETSC_EXTERN PetscErrorCode DMPlexGetFullMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 115 PETSC_EXTERN PetscErrorCode DMPlexRestoreMeet(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 116 PETSC_EXTERN PetscErrorCode DMPlexGetJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 117 PETSC_EXTERN PetscErrorCode DMPlexGetFullJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 118 PETSC_EXTERN PetscErrorCode DMPlexRestoreJoin(DM, PetscInt, const PetscInt [], PetscInt *, const PetscInt **); 119 PETSC_EXTERN PetscErrorCode DMPlexGetTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]); 120 PETSC_EXTERN PetscErrorCode DMPlexRestoreTransitiveClosure(DM, PetscInt, PetscBool, PetscInt *, PetscInt *[]); 121 122 /* Mesh Generation */ 123 PETSC_EXTERN PetscErrorCode DMPlexGenerate(DM, const char [], PetscBool , DM *); 124 PETSC_EXTERN PetscErrorCode DMPlexGenerateRegister(const char[],PetscErrorCode (*)(DM,PetscBool,DM*),PetscErrorCode (*)(DM,double*,DM*),PetscInt); 125 PETSC_EXTERN PetscErrorCode DMPlexGenerateRegisterAll(void); 126 PETSC_EXTERN PetscErrorCode DMPlexGenerateRegisterDestroy(void); 127 PETSC_EXTERN PetscErrorCode DMPlexCopyCoordinates(DM, DM); 128 PETSC_EXTERN PetscErrorCode DMPlexCreateDoublet(MPI_Comm, PetscInt, PetscBool, PetscBool, PetscBool, PetscReal, DM *); 129 PETSC_EXTERN PetscErrorCode DMPlexCreateSquareBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []); 130 PETSC_EXTERN PetscErrorCode DMPlexCreateCubeBoundary(DM, const PetscReal [], const PetscReal [], const PetscInt []); 131 PETSC_EXTERN PetscErrorCode DMPlexCreateBoxMesh(MPI_Comm, PetscInt, PetscBool, const PetscInt[], const PetscReal[], const PetscReal[], const DMBoundaryType[], PetscBool, DM *); 132 PETSC_EXTERN PetscErrorCode DMPlexCreateSphereMesh(MPI_Comm, PetscInt, PetscBool, DM *); 133 PETSC_EXTERN PetscErrorCode DMPlexCreateHexCylinderMesh(MPI_Comm, PetscInt, DMBoundaryType, DM *); 134 PETSC_EXTERN PetscErrorCode DMPlexCreateWedgeCylinderMesh(MPI_Comm, PetscInt, PetscBool, DM *); 135 PETSC_EXTERN PetscErrorCode DMPlexCreateConeSection(DM, PetscSection *); 136 PETSC_EXTERN PetscErrorCode DMPlexInvertCell(PetscInt, PetscInt, int []); 137 PETSC_EXTERN PetscErrorCode DMPlexCheckSymmetry(DM); 138 PETSC_EXTERN PetscErrorCode DMPlexCheckSkeleton(DM, PetscBool, PetscInt); 139 PETSC_EXTERN PetscErrorCode DMPlexCheckFaces(DM, PetscBool, PetscInt); 140 141 PETSC_EXTERN PetscErrorCode DMPlexTriangleSetOptions(DM, const char *); 142 PETSC_EXTERN PetscErrorCode DMPlexTetgenSetOptions(DM, const char *); 143 144 PETSC_EXTERN PetscErrorCode DMPlexCreateFromFile(MPI_Comm, const char[], PetscBool, DM *); 145 PETSC_EXTERN PetscErrorCode DMPlexCreateExodus(MPI_Comm, PetscInt, PetscBool, DM *); 146 PETSC_EXTERN PetscErrorCode DMPlexCreateExodusFromFile(MPI_Comm, const char [], PetscBool, DM *); 147 PETSC_EXTERN PetscErrorCode DMPlexCreateCGNS(MPI_Comm, PetscInt, PetscBool, DM *); 148 PETSC_EXTERN PetscErrorCode DMPlexCreateCGNSFromFile(MPI_Comm, const char[], PetscBool, DM *); 149 PETSC_EXTERN PetscErrorCode DMPlexCreateGmsh(MPI_Comm, PetscViewer, PetscBool, DM *); 150 PETSC_EXTERN PetscErrorCode DMPlexCreateGmshFromFile(MPI_Comm, const char [], PetscBool, DM *); 151 PETSC_EXTERN PetscErrorCode DMPlexCreateFluent(MPI_Comm, PetscViewer, PetscBool, DM *); 152 PETSC_EXTERN PetscErrorCode DMPlexCreateFluentFromFile(MPI_Comm, const char [], PetscBool, DM *); 153 PETSC_EXTERN PetscErrorCode DMPlexCreateMedFromFile(MPI_Comm, const char [], PetscBool, DM *); 154 PETSC_EXTERN PetscErrorCode DMPlexCreatePLYFromFile(MPI_Comm, const char [], PetscBool, DM *); 155 156 /* Mesh Partitioning and Distribution */ 157 PETSC_EXTERN PetscErrorCode DMPlexCreateNeighborCSR(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **); 158 PETSC_EXTERN PetscErrorCode DMPlexGetPartitioner(DM, PetscPartitioner *); 159 PETSC_EXTERN PetscErrorCode DMPlexSetPartitioner(DM, PetscPartitioner); 160 PETSC_EXTERN PetscErrorCode DMPlexCreatePartition(DM, const char[], PetscInt, PetscBool, PetscSection *, IS *, PetscSection *, IS *); 161 PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionerGraph(DM, PetscInt, PetscInt *, PetscInt **, PetscInt **, IS *); 162 PETSC_EXTERN PetscErrorCode DMPlexCreatePartitionClosure(DM, PetscSection, IS, PetscSection *, IS *); 163 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelInvert(DM, DMLabel, PetscSF, DMLabel); 164 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelClosure(DM, DMLabel); 165 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelAdjacency(DM, DMLabel); 166 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelPropagate(DM, DMLabel); 167 PETSC_EXTERN PetscErrorCode DMPlexPartitionLabelCreateSF(DM, DMLabel, PetscSF *); 168 PETSC_EXTERN PetscErrorCode DMPlexDistribute(DM, PetscInt, PetscSF*, DM*); 169 PETSC_EXTERN PetscErrorCode DMPlexDistributeOverlap(DM, PetscInt, PetscSF *, DM *); 170 PETSC_EXTERN PetscErrorCode DMPlexDistributeField(DM,PetscSF,PetscSection,Vec,PetscSection,Vec); 171 PETSC_EXTERN PetscErrorCode DMPlexDistributeFieldIS(DM, PetscSF, PetscSection, IS, PetscSection, IS *); 172 PETSC_EXTERN PetscErrorCode DMPlexDistributeData(DM,PetscSF,PetscSection,MPI_Datatype,void*,PetscSection,void**); 173 PETSC_EXTERN PetscErrorCode DMPlexMigrate(DM, PetscSF, DM); 174 PETSC_EXTERN PetscErrorCode DMPlexGetRedundantDM(DM, DM*); 175 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUser(DM, PetscErrorCode (*)(DM,PetscInt,PetscInt*,PetscInt[],void*),void*); 176 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUser(DM, PetscErrorCode (**)(DM,PetscInt,PetscInt*,PetscInt[],void*),void**); 177 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseCone(DM,PetscBool); 178 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseCone(DM,PetscBool*); 179 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseClosure(DM,PetscBool); 180 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseClosure(DM,PetscBool*); 181 PETSC_EXTERN PetscErrorCode DMPlexSetAdjacencyUseAnchors(DM,PetscBool); 182 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacencyUseAnchors(DM,PetscBool*); 183 PETSC_EXTERN PetscErrorCode DMPlexGetAdjacency(DM, PetscInt, PetscInt *, PetscInt *[]); 184 PETSC_EXTERN PetscErrorCode DMPlexSetMigrationSF(DM, PetscSF); 185 PETSC_EXTERN PetscErrorCode DMPlexGetMigrationSF(DM, PetscSF *); 186 187 PETSC_EXTERN PetscErrorCode DMPlexGetOrdering(DM, MatOrderingType, DMLabel, IS *); 188 PETSC_EXTERN PetscErrorCode DMPlexPermute(DM, IS, DM *); 189 190 PETSC_EXTERN PetscErrorCode DMPlexCreateProcessSF(DM, PetscSF, IS *, PetscSF *); 191 PETSC_EXTERN PetscErrorCode DMPlexCreateTwoSidedProcessSF(DM, PetscSF, PetscSection, IS, PetscSection, IS, IS *, PetscSF *); 192 PETSC_EXTERN PetscErrorCode DMPlexDistributeOwnership(DM, PetscSection, IS *, PetscSection, IS *); 193 PETSC_EXTERN PetscErrorCode DMPlexCreateOverlap(DM, PetscInt, PetscSection, IS, PetscSection, IS, DMLabel *); 194 PETSC_EXTERN PetscErrorCode DMPlexCreateOverlapMigrationSF(DM, PetscSF, PetscSF *); 195 PETSC_EXTERN PetscErrorCode DMPlexStratifyMigrationSF(DM, PetscSF, PetscSF *); 196 197 /* Submesh Support */ 198 PETSC_EXTERN PetscErrorCode DMPlexCreateSubmesh(DM, DMLabel, PetscInt, DM*); 199 PETSC_EXTERN PetscErrorCode DMPlexCreateHybridMesh(DM, DMLabel, DMLabel *, DM *); 200 PETSC_EXTERN PetscErrorCode DMPlexGetSubpointMap(DM, DMLabel*); 201 PETSC_EXTERN PetscErrorCode DMPlexSetSubpointMap(DM, DMLabel); 202 PETSC_EXTERN PetscErrorCode DMPlexCreateSubpointIS(DM, IS *); 203 PETSC_EXTERN PetscErrorCode DMPlexGetSubpoint(DM, PetscInt, PetscInt *); 204 205 PETSC_EXTERN PetscErrorCode DMPlexLabelComplete(DM, DMLabel); 206 PETSC_EXTERN PetscErrorCode DMPlexLabelCohesiveComplete(DM, DMLabel, DMLabel, PetscBool, DM); 207 PETSC_EXTERN PetscErrorCode DMPlexLabelAddCells(DM, DMLabel); 208 PETSC_EXTERN PetscErrorCode DMPlexLabelClearCells(DM, DMLabel); 209 210 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementLimit(DM, PetscReal *); 211 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementLimit(DM, PetscReal); 212 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementUniform(DM, PetscBool *); 213 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementUniform(DM, PetscBool); 214 PETSC_EXTERN PetscErrorCode DMPlexGetRefinementFunction(DM, PetscErrorCode (**)(const PetscReal [], PetscReal *)); 215 PETSC_EXTERN PetscErrorCode DMPlexSetRefinementFunction(DM, PetscErrorCode (*)(const PetscReal [], PetscReal *)); 216 PETSC_EXTERN PetscErrorCode DMPlexCreateCoarsePointIS(DM, IS *); 217 PETSC_EXTERN PetscErrorCode DMPlexGetRegularRefinement(DM, PetscBool *); 218 PETSC_EXTERN PetscErrorCode DMPlexSetRegularRefinement(DM, PetscBool); 219 PETSC_EXTERN PetscErrorCode DMPlexRefineSimplexToTensor(DM, DM*); 220 221 /* Support for cell-vertex meshes */ 222 PETSC_EXTERN PetscErrorCode DMPlexGetNumFaceVertices(DM, PetscInt, PetscInt, PetscInt *); 223 PETSC_EXTERN PetscErrorCode DMPlexGetOrientedFace(DM, PetscInt, PetscInt, const PetscInt [], PetscInt, PetscInt [], PetscInt [], PetscInt [], PetscBool *); 224 225 /* Geometry Support */ 226 PETSC_EXTERN PetscErrorCode DMPlexGetMinRadius(DM, PetscReal *); 227 PETSC_EXTERN PetscErrorCode DMPlexSetMinRadius(DM, PetscReal); 228 PETSC_EXTERN PetscErrorCode DMPlexComputeProjection2Dto1D(PetscScalar[], PetscReal[]); 229 PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto1D(PetscScalar[], PetscReal[]); 230 PETSC_EXTERN PetscErrorCode DMPlexComputeProjection3Dto2D(PetscInt, PetscScalar[], PetscReal[]); 231 232 /* Point Location */ 233 typedef struct _PetscGridHash *PetscGridHash; 234 PETSC_EXTERN PetscErrorCode PetscGridHashCreate(MPI_Comm, PetscInt, const PetscScalar[], PetscGridHash *); 235 PETSC_EXTERN PetscErrorCode PetscGridHashEnlarge(PetscGridHash, const PetscScalar []); 236 PETSC_EXTERN PetscErrorCode PetscGridHashSetGrid(PetscGridHash, const PetscInt [], const PetscReal []); 237 PETSC_EXTERN PetscErrorCode PetscGridHashGetEnclosingBox(PetscGridHash, PetscInt, const PetscScalar [], PetscInt [], PetscInt []); 238 PETSC_EXTERN PetscErrorCode PetscGridHashDestroy(PetscGridHash *); 239 240 /* FVM Support */ 241 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFVM(DM, PetscInt, PetscReal *, PetscReal [], PetscReal []); 242 PETSC_EXTERN PetscErrorCode DMPlexComputeGeometryFVM(DM, Vec *, Vec *); 243 PETSC_EXTERN PetscErrorCode DMPlexComputeGradientFVM(DM, PetscFV, Vec, Vec, DM *); 244 PETSC_EXTERN PetscErrorCode DMPlexGetDataFVM(DM, PetscFV, Vec *, Vec *, DM *); 245 246 /* FEM Support */ 247 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValues(DM, PetscBool, Vec, PetscReal, Vec, Vec, Vec); 248 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssential(DM, PetscReal, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt[], 249 PetscErrorCode (*)(PetscInt, PetscReal, const PetscReal[], PetscInt, PetscScalar *, void *), void *, Vec ); 250 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesEssentialField(DM, PetscReal, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [], 251 void (*)(PetscInt, PetscInt, PetscInt, 252 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 253 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 254 PetscReal, const PetscReal[], PetscInt, const PetscScalar[], 255 PetscScalar[]), 256 void *, Vec); 257 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesRiemann(DM, PetscReal, Vec, Vec, Vec, PetscInt, PetscInt, const PetscInt[], DMLabel, PetscInt, const PetscInt [], 258 PetscErrorCode (*)(PetscReal,const PetscReal*,const PetscReal*,const PetscScalar*,PetscScalar*,void*), void *, Vec); 259 PETSC_EXTERN PetscErrorCode DMPlexMarkBoundaryFaces(DM, PetscInt, DMLabel); 260 261 PETSC_EXTERN PetscErrorCode DMPlexCreateSection(DM, PetscInt, PetscInt, const PetscInt [], const PetscInt [], PetscInt, const PetscInt [], const IS [], const IS [], IS, PetscSection *); 262 PETSC_EXTERN PetscErrorCode DMPlexGetSubdomainSection(DM, PetscSection*); 263 264 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryAffineFEM(DM, PetscInt, PetscReal *, PetscReal *, PetscReal *, PetscReal *); 265 PETSC_EXTERN PetscErrorCode DMPlexComputeCellGeometryFEM(DM, PetscInt, PetscQuadrature, PetscReal *, PetscReal *, PetscReal *, PetscReal *); 266 PETSC_EXTERN PetscErrorCode DMPlexCoordinatesToReference(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]); 267 PETSC_EXTERN PetscErrorCode DMPlexReferenceToCoordinates(DM, PetscInt, PetscInt, const PetscReal [], PetscReal[]); 268 269 PETSC_EXTERN PetscErrorCode DMPlexVecGetClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]); 270 PETSC_EXTERN PetscErrorCode DMPlexVecRestoreClosure(DM, PetscSection, Vec, PetscInt, PetscInt *, PetscScalar *[]); 271 PETSC_EXTERN PetscErrorCode DMPlexVecSetClosure(DM, PetscSection, Vec, PetscInt, const PetscScalar[], InsertMode); 272 PETSC_EXTERN PetscErrorCode DMPlexMatSetClosure(DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode); 273 PETSC_EXTERN PetscErrorCode DMPlexGetClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscInt *, PetscInt **, PetscInt *); 274 PETSC_EXTERN PetscErrorCode DMPlexRestoreClosureIndices(DM, PetscSection, PetscSection, PetscInt, PetscInt *, PetscInt **,PetscInt *); 275 PETSC_EXTERN PetscErrorCode DMPlexMatSetClosureRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, Mat, PetscInt, const PetscScalar[], InsertMode); 276 PETSC_EXTERN PetscErrorCode DMPlexMatGetClosureIndicesRefined(DM, PetscSection, PetscSection, DM, PetscSection, PetscSection, PetscInt, PetscInt[], PetscInt[]); 277 PETSC_EXTERN PetscErrorCode DMPlexCreateClosureIndex(DM, PetscSection); 278 PETSC_EXTERN PetscErrorCode DMPlexCreateSpectralClosurePermutation(DM, PetscInt, PetscSection); 279 280 PETSC_EXTERN PetscErrorCode DMPlexConstructGhostCells(DM, const char [], PetscInt *, DM *); 281 PETSC_EXTERN PetscErrorCode DMPlexConstructCohesiveCells(DM, DMLabel, DM *); 282 283 PETSC_EXTERN PetscErrorCode DMPlexGetHybridBounds(DM, PetscInt *, PetscInt *, PetscInt *, PetscInt *); 284 PETSC_EXTERN PetscErrorCode DMPlexSetHybridBounds(DM, PetscInt, PetscInt, PetscInt, PetscInt); 285 PETSC_EXTERN PetscErrorCode DMPlexGetVTKCellHeight(DM, PetscInt *); 286 PETSC_EXTERN PetscErrorCode DMPlexSetVTKCellHeight(DM, PetscInt); 287 PETSC_EXTERN PetscErrorCode DMPlexVTKWriteAll(PetscObject, PetscViewer); 288 289 PETSC_EXTERN PetscErrorCode DMPlexGetScale(DM, PetscUnit, PetscReal *); 290 PETSC_EXTERN PetscErrorCode DMPlexSetScale(DM, PetscUnit, PetscReal); 291 292 typedef struct { 293 DM dm; 294 Vec u; /* The base vector for the Jacbobian action J(u) x */ 295 Mat J; /* Preconditioner for testing */ 296 void *user; 297 } JacActionCtx; 298 299 PETSC_EXTERN PetscErrorCode DMPlexInsertBoundaryValuesFEM(DM, Vec); 300 PETSC_EXTERN PetscErrorCode DMPlexSetMaxProjectionHeight(DM, PetscInt); 301 PETSC_EXTERN PetscErrorCode DMPlexGetMaxProjectionHeight(DM, PetscInt*); 302 PETSC_EXTERN PetscErrorCode DMPlexProjectFieldLocal(DM, Vec, 303 void (**)(PetscInt, PetscInt, PetscInt, 304 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 305 const PetscInt[], const PetscInt[], const PetscScalar[], const PetscScalar[], const PetscScalar[], 306 PetscReal, const PetscReal [], PetscScalar []), InsertMode, Vec); 307 PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffLocal(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal *); 308 PETSC_EXTERN PetscErrorCode DMPlexComputeL2FieldDiff(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, PetscReal[]); 309 PETSC_EXTERN PetscErrorCode DMPlexComputeL2DiffVec(DM, PetscReal, PetscErrorCode (**)(PetscInt, PetscReal, const PetscReal [], PetscInt, PetscScalar *, void *), void **, Vec, Vec); 310 PETSC_EXTERN PetscErrorCode DMPlexComputeCellwiseIntegralFEM(DM, Vec, Vec, void *); 311 PETSC_EXTERN PetscErrorCode DMPlexComputeIntegralFEM(DM, Vec, PetscScalar *, void *); 312 PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorNested(DM, DM, Mat, void *); 313 PETSC_EXTERN PetscErrorCode DMPlexComputeInterpolatorGeneral(DM, DM, Mat, void *); 314 PETSC_EXTERN PetscErrorCode DMPlexComputeGradientClementInterpolant(DM, Vec, Vec); 315 PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorFEM(DM, DM, VecScatter *, void *); 316 PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixNested(DM, DM, Mat, void *); 317 PETSC_EXTERN PetscErrorCode DMPlexComputeMassMatrixGeneral(DM, DM, Mat, void *); 318 319 PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBody(DM, MatNullSpace *); 320 PETSC_EXTERN PetscErrorCode DMPlexCreateRigidBodies(DM, PetscInt, DMLabel, const PetscInt[], const PetscInt[], MatNullSpace *); 321 322 PETSC_EXTERN PetscErrorCode DMPlexSetSNESLocalFEM(DM,void *,void *,void *); 323 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeBoundaryFEM(DM, Vec, void *); 324 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeResidualFEM(DM, Vec, Vec, void *); 325 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianFEM(DM, Vec, Mat, Mat, void *); 326 PETSC_EXTERN PetscErrorCode DMPlexSNESComputeJacobianActionFEM(DM, Vec, Vec, Vec, void *); 327 328 PETSC_EXTERN PetscErrorCode DMPlexTSComputeBoundary(DM, PetscReal, Vec, Vec, void *); 329 PETSC_EXTERN PetscErrorCode DMPlexTSComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *); 330 PETSC_EXTERN PetscErrorCode DMPlexTSComputeIFunctionFEM(DM, PetscReal, Vec, Vec, Vec, void *); 331 PETSC_EXTERN PetscErrorCode DMPlexTSComputeIJacobianFEM(DM, PetscReal, Vec, Vec, PetscReal, Mat, Mat, void *); 332 333 PETSC_EXTERN PetscErrorCode DMPlexComputeRHSFunctionFVM(DM, PetscReal, Vec, Vec, void *); 334 PETSC_EXTERN PetscErrorCode DMPlexReconstructGradientsFVM(DM,Vec,Vec); 335 336 /* anchors */ 337 PETSC_EXTERN PetscErrorCode DMPlexGetAnchors(DM, PetscSection*, IS*); 338 PETSC_EXTERN PetscErrorCode DMPlexSetAnchors(DM, PetscSection, IS); 339 /* tree */ 340 PETSC_EXTERN PetscErrorCode DMPlexSetReferenceTree(DM, DM); 341 PETSC_EXTERN PetscErrorCode DMPlexGetReferenceTree(DM, DM*); 342 PETSC_EXTERN PetscErrorCode DMPlexReferenceTreeGetChildSymmetry(DM, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt, PetscInt *, PetscInt *); 343 PETSC_EXTERN PetscErrorCode DMPlexCreateDefaultReferenceTree(MPI_Comm, PetscInt, PetscBool, DM*); 344 PETSC_EXTERN PetscErrorCode DMPlexSetTree(DM, PetscSection, PetscInt [], PetscInt []); 345 PETSC_EXTERN PetscErrorCode DMPlexGetTree(DM, PetscSection *, PetscInt *[], PetscInt *[], PetscSection *, PetscInt *[]); 346 PETSC_EXTERN PetscErrorCode DMPlexGetTreeParent(DM, PetscInt, PetscInt *, PetscInt *); 347 PETSC_EXTERN PetscErrorCode DMPlexGetTreeChildren(DM, PetscInt, PetscInt *, const PetscInt *[]); 348 PETSC_EXTERN PetscErrorCode DMPlexTreeRefineCell(DM, PetscInt, DM *); 349 PETSC_EXTERN PetscErrorCode DMPlexComputeInjectorReferenceTree(DM, Mat *); 350 PETSC_EXTERN PetscErrorCode DMPlexTransferVecTree(DM,Vec,DM,Vec,PetscSF,PetscSF,PetscInt *,PetscInt *,PetscBool,PetscReal); 351 352 /* natural order */ 353 PETSC_EXTERN PetscErrorCode DMPlexCreateGlobalToNaturalSF(DM, PetscSection, PetscSF, PetscSF *); 354 PETSC_EXTERN PetscErrorCode DMPlexSetGlobalToNaturalSF(DM, PetscSF); 355 PETSC_EXTERN PetscErrorCode DMPlexGetGlobalToNaturalSF(DM, PetscSF *); 356 PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalBegin(DM, Vec, Vec); 357 PETSC_EXTERN PetscErrorCode DMPlexGlobalToNaturalEnd(DM, Vec, Vec); 358 PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalBegin(DM, Vec, Vec); 359 PETSC_EXTERN PetscErrorCode DMPlexNaturalToGlobalEnd(DM, Vec, Vec); 360 361 /* mesh adaptation */ 362 PETSC_EXTERN PetscErrorCode DMPlexAdapt(DM, Vec, const char [], DM *); 363 #endif 364